data_2GCV # _entry.id 2GCV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2GCV pdb_00002gcv 10.2210/pdb2gcv/pdb NDB UR0079 ? ? RCSB RCSB036964 ? ? WWPDB D_1000036964 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-26 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-20 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_conn_angle 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_conn_type 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.value' 6 4 'Structure model' '_struct_conn.conn_type_id' 7 4 'Structure model' '_struct_conn.id' 8 4 'Structure model' '_struct_conn.pdbx_dist_value' 9 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 11 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 23 4 'Structure model' '_struct_conn_type.id' 24 4 'Structure model' '_struct_ref_seq_dif.details' 25 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 26 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 27 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 2GCV _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.recvd_initial_deposition_date 2006-03-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2GCS . unspecified PDB 2H0S . unspecified PDB 2H0W . unspecified PDB 2H0X . unspecified PDB 2H0Z . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Klein, D.J.' 1 ;Ferre-D'Amare, A.R. ; 2 # _citation.id primary _citation.title 'Structural basis of glmS ribozyme activation by glucosamine-6-phosphate' _citation.journal_abbrev Science _citation.journal_volume 313 _citation.page_first 1752 _citation.page_last 1756 _citation.year 2006 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16990543 _citation.pdbx_database_id_DOI 10.1126/science.1129666 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Klein, D.J.' 1 ? primary ;Ferre-D'Amare, A.R. ; 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'glmS ribozyme product oligonucleotide' 8279.962 1 ? ? ? ? 2 polymer syn 'glmS ribozyme RNA' 40598.070 1 ? ? ? ? 3 non-polymer syn '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 195.237 2 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 5 water nat water 18.015 155 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GCGCCUGGACUUAAAGCCAUUGCACU GCGCCUGGACUUAAAGCCAUUGCACU A ? 2 polyribonucleotide no yes ;CCGGCUUUAAGUUGACGAGGGCAGGGUUUAUCGAGACAUCGGCGGGUGCCCUGCGGUCUUCCUGCGACCGUUAGAGGACU GGUAAAACCACAGGCGACUGUGGCAUAGAGCAGUCCGGGCAGGA(A23) ; ;CCGGCUUUAAGUUGACGAGGGCAGGGUUUAUCGAGACAUCGGCGGGUGCCCUGCGGUCUUCCUGCGACCGUUAGAGGACU GGUAAAACCACAGGCGACUGUGGCAUAGAGCAGUCCGGGCAGGAA ; B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' MES 4 'MAGNESIUM ION' MG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 C n 1 5 C n 1 6 U n 1 7 G n 1 8 G n 1 9 A n 1 10 C n 1 11 U n 1 12 U n 1 13 A n 1 14 A n 1 15 A n 1 16 G n 1 17 C n 1 18 C n 1 19 A n 1 20 U n 1 21 U n 1 22 G n 1 23 C n 1 24 A n 1 25 C n 1 26 U n 2 1 C n 2 2 C n 2 3 G n 2 4 G n 2 5 C n 2 6 U n 2 7 U n 2 8 U n 2 9 A n 2 10 A n 2 11 G n 2 12 U n 2 13 U n 2 14 G n 2 15 A n 2 16 C n 2 17 G n 2 18 A n 2 19 G n 2 20 G n 2 21 G n 2 22 C n 2 23 A n 2 24 G n 2 25 G n 2 26 G n 2 27 U n 2 28 U n 2 29 U n 2 30 A n 2 31 U n 2 32 C n 2 33 G n 2 34 A n 2 35 G n 2 36 A n 2 37 C n 2 38 A n 2 39 U n 2 40 C n 2 41 G n 2 42 G n 2 43 C n 2 44 G n 2 45 G n 2 46 G n 2 47 U n 2 48 G n 2 49 C n 2 50 C n 2 51 C n 2 52 U n 2 53 G n 2 54 C n 2 55 G n 2 56 G n 2 57 U n 2 58 C n 2 59 U n 2 60 U n 2 61 C n 2 62 C n 2 63 U n 2 64 G n 2 65 C n 2 66 G n 2 67 A n 2 68 C n 2 69 C n 2 70 G n 2 71 U n 2 72 U n 2 73 A n 2 74 G n 2 75 A n 2 76 G n 2 77 G n 2 78 A n 2 79 C n 2 80 U n 2 81 G n 2 82 G n 2 83 U n 2 84 A n 2 85 A n 2 86 A n 2 87 A n 2 88 C n 2 89 C n 2 90 A n 2 91 C n 2 92 A n 2 93 G n 2 94 G n 2 95 C n 2 96 G n 2 97 A n 2 98 C n 2 99 U n 2 100 G n 2 101 U n 2 102 G n 2 103 G n 2 104 C n 2 105 A n 2 106 U n 2 107 A n 2 108 G n 2 109 A n 2 110 G n 2 111 C n 2 112 A n 2 113 G n 2 114 U n 2 115 C n 2 116 C n 2 117 G n 2 118 G n 2 119 G n 2 120 C n 2 121 A n 2 122 G n 2 123 G n 2 124 A n 2 125 A23 n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'This sequence occurs naturally in the Thermoanaerobacter tengcongensis glmS ribozyme' 2 1 sample ? ? ? ? ? 'in vitro transcription of sequnce from Thermoanaerobacter tengcongensis' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A23 'RNA linking' n ;ADENOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C10 H13 N5 O9 P2' 409.186 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MES non-polymer . '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' ? 'C6 H13 N O4 S' 195.237 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 G 8 8 8 G G A . n A 1 9 A 9 9 9 A A A . n A 1 10 C 10 10 10 C C A . n A 1 11 U 11 11 11 U U A . n A 1 12 U 12 12 12 U U A . n A 1 13 A 13 13 13 A A A . n A 1 14 A 14 14 14 A A A . n A 1 15 A 15 15 15 A A A . n A 1 16 G 16 16 16 G G A . n A 1 17 C 17 17 17 C C A . n A 1 18 C 18 18 18 C C A . n A 1 19 A 19 19 19 A A A . n A 1 20 U 20 20 20 U U A . n A 1 21 U 21 21 ? ? ? A . n A 1 22 G 22 22 ? ? ? A . n A 1 23 C 23 23 ? ? ? A . n A 1 24 A 24 24 ? ? ? A . n A 1 25 C 25 25 ? ? ? A . n A 1 26 U 26 26 ? ? ? A . n B 2 1 C 1 21 ? ? ? B . n B 2 2 C 2 22 ? ? ? B . n B 2 3 G 3 23 23 G G B . n B 2 4 G 4 24 24 G G B . n B 2 5 C 5 25 25 C C B . n B 2 6 U 6 26 26 U U B . n B 2 7 U 7 27 27 U U B . n B 2 8 U 8 28 28 U U B . n B 2 9 A 9 29 29 A A B . n B 2 10 A 10 30 30 A A B . n B 2 11 G 11 31 31 G G B . n B 2 12 U 12 32 32 U U B . n B 2 13 U 13 33 33 U U B . n B 2 14 G 14 34 34 G G B . n B 2 15 A 15 35 35 A A B . n B 2 16 C 16 36 36 C C B . n B 2 17 G 17 37 37 G G B . n B 2 18 A 18 38 38 A A B . n B 2 19 G 19 39 39 G G B . n B 2 20 G 20 40 40 G G B . n B 2 21 G 21 41 41 G G B . n B 2 22 C 22 42 42 C C B . n B 2 23 A 23 43 43 A A B . n B 2 24 G 24 44 44 G G B . n B 2 25 G 25 45 45 G G B . n B 2 26 G 26 46 46 G G B . n B 2 27 U 27 47 47 U U B . n B 2 28 U 28 48 48 U U B . n B 2 29 U 29 49 49 U U B . n B 2 30 A 30 50 50 A A B . n B 2 31 U 31 51 51 U U B . n B 2 32 C 32 52 52 C C B . n B 2 33 G 33 53 53 G G B . n B 2 34 A 34 54 54 A A B . n B 2 35 G 35 55 55 G G B . n B 2 36 A 36 56 56 A A B . n B 2 37 C 37 57 57 C C B . n B 2 38 A 38 58 58 A A B . n B 2 39 U 39 59 59 U U B . n B 2 40 C 40 60 60 C C B . n B 2 41 G 41 61 61 G G B . n B 2 42 G 42 62 62 G G B . n B 2 43 C 43 63 63 C C B . n B 2 44 G 44 64 64 G G B . n B 2 45 G 45 65 65 G G B . n B 2 46 G 46 66 66 G G B . n B 2 47 U 47 67 67 U U B . n B 2 48 G 48 68 68 G G B . n B 2 49 C 49 69 69 C C B . n B 2 50 C 50 70 70 C C B . n B 2 51 C 51 71 71 C C B . n B 2 52 U 52 72 72 U U B . n B 2 53 G 53 73 73 G G B . n B 2 54 C 54 74 74 C C B . n B 2 55 G 55 75 75 G G B . n B 2 56 G 56 76 76 G G B . n B 2 57 U 57 77 77 U U B . n B 2 58 C 58 78 78 C C B . n B 2 59 U 59 79 79 U U B . n B 2 60 U 60 80 80 U U B . n B 2 61 C 61 81 81 C C B . n B 2 62 C 62 82 82 C C B . n B 2 63 U 63 83 83 U U B . n B 2 64 G 64 84 84 G G B . n B 2 65 C 65 85 85 C C B . n B 2 66 G 66 86 86 G G B . n B 2 67 A 67 87 87 A A B . n B 2 68 C 68 88 88 C C B . n B 2 69 C 69 89 89 C C B . n B 2 70 G 70 90 90 G G B . n B 2 71 U 71 91 91 U U B . n B 2 72 U 72 92 92 U U B . n B 2 73 A 73 93 93 A A B . n B 2 74 G 74 94 94 G G B . n B 2 75 A 75 95 95 A A B . n B 2 76 G 76 96 96 G G B . n B 2 77 G 77 97 97 G G B . n B 2 78 A 78 98 98 A A B . n B 2 79 C 79 99 99 C C B . n B 2 80 U 80 100 100 U U B . n B 2 81 G 81 101 101 G G B . n B 2 82 G 82 102 102 G G B . n B 2 83 U 83 103 103 U U B . n B 2 84 A 84 104 104 A A B . n B 2 85 A 85 105 105 A A B . n B 2 86 A 86 106 106 A A B . n B 2 87 A 87 107 107 A A B . n B 2 88 C 88 108 108 C C B . n B 2 89 C 89 109 109 C C B . n B 2 90 A 90 110 110 A A B . n B 2 91 C 91 111 111 C C B . n B 2 92 A 92 112 112 A A B . n B 2 93 G 93 113 113 G G B . n B 2 94 G 94 114 114 G G B . n B 2 95 C 95 115 115 C C B . n B 2 96 G 96 116 116 G G B . n B 2 97 A 97 117 117 A A B . n B 2 98 C 98 118 118 C C B . n B 2 99 U 99 119 119 U U B . n B 2 100 G 100 120 120 G G B . n B 2 101 U 101 121 121 U U B . n B 2 102 G 102 122 122 G G B . n B 2 103 G 103 123 123 G G B . n B 2 104 C 104 124 124 C C B . n B 2 105 A 105 125 125 A A B . n B 2 106 U 106 126 126 U U B . n B 2 107 A 107 127 127 A A B . n B 2 108 G 108 128 128 G G B . n B 2 109 A 109 129 129 A A B . n B 2 110 G 110 130 130 G G B . n B 2 111 C 111 131 131 C C B . n B 2 112 A 112 132 132 A A B . n B 2 113 G 113 133 133 G G B . n B 2 114 U 114 134 134 U U B . n B 2 115 C 115 135 135 C C B . n B 2 116 C 116 136 136 C C B . n B 2 117 G 117 137 137 G G B . n B 2 118 G 118 138 138 G G B . n B 2 119 G 119 139 139 G G B . n B 2 120 C 120 140 140 C C B . n B 2 121 A 121 141 141 A A B . n B 2 122 G 122 142 142 G G B . n B 2 123 G 123 143 143 G G B . n B 2 124 A 124 144 144 A A B . n B 2 125 A23 125 145 145 A23 A23 B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MES 1 501 501 MES MES A . D 4 MG 1 401 401 MG MG B . E 4 MG 1 402 402 MG MG B . F 4 MG 1 403 403 MG MG B . G 4 MG 1 404 404 MG MG B . H 3 MES 1 502 502 MES MES B . I 5 HOH 1 202 202 HOH HOH A . I 5 HOH 2 203 203 HOH HOH A . I 5 HOH 3 205 205 HOH HOH A . I 5 HOH 4 223 223 HOH HOH A . I 5 HOH 5 236 236 HOH HOH A . I 5 HOH 6 237 237 HOH HOH A . I 5 HOH 7 248 248 HOH HOH A . I 5 HOH 8 265 265 HOH HOH A . I 5 HOH 9 312 312 HOH HOH A . I 5 HOH 10 329 329 HOH HOH A . I 5 HOH 11 330 330 HOH HOH A . I 5 HOH 12 332 332 HOH HOH A . J 5 HOH 1 201 201 HOH HOH B . J 5 HOH 2 204 204 HOH HOH B . J 5 HOH 3 206 206 HOH HOH B . J 5 HOH 4 207 207 HOH HOH B . J 5 HOH 5 208 208 HOH HOH B . J 5 HOH 6 209 209 HOH HOH B . J 5 HOH 7 210 210 HOH HOH B . J 5 HOH 8 211 211 HOH HOH B . J 5 HOH 9 212 212 HOH HOH B . J 5 HOH 10 213 213 HOH HOH B . J 5 HOH 11 214 214 HOH HOH B . J 5 HOH 12 215 215 HOH HOH B . J 5 HOH 13 216 216 HOH HOH B . J 5 HOH 14 217 217 HOH HOH B . J 5 HOH 15 218 218 HOH HOH B . J 5 HOH 16 219 219 HOH HOH B . J 5 HOH 17 220 220 HOH HOH B . J 5 HOH 18 221 221 HOH HOH B . J 5 HOH 19 222 222 HOH HOH B . J 5 HOH 20 224 224 HOH HOH B . J 5 HOH 21 225 225 HOH HOH B . J 5 HOH 22 226 226 HOH HOH B . J 5 HOH 23 227 227 HOH HOH B . J 5 HOH 24 228 228 HOH HOH B . J 5 HOH 25 229 229 HOH HOH B . J 5 HOH 26 230 230 HOH HOH B . J 5 HOH 27 231 231 HOH HOH B . J 5 HOH 28 232 232 HOH HOH B . J 5 HOH 29 233 233 HOH HOH B . J 5 HOH 30 234 234 HOH HOH B . J 5 HOH 31 235 235 HOH HOH B . J 5 HOH 32 238 238 HOH HOH B . J 5 HOH 33 239 239 HOH HOH B . J 5 HOH 34 240 240 HOH HOH B . J 5 HOH 35 241 241 HOH HOH B . J 5 HOH 36 242 242 HOH HOH B . J 5 HOH 37 243 243 HOH HOH B . J 5 HOH 38 244 244 HOH HOH B . J 5 HOH 39 245 245 HOH HOH B . J 5 HOH 40 246 246 HOH HOH B . J 5 HOH 41 247 247 HOH HOH B . J 5 HOH 42 249 249 HOH HOH B . J 5 HOH 43 250 250 HOH HOH B . J 5 HOH 44 251 251 HOH HOH B . J 5 HOH 45 252 252 HOH HOH B . J 5 HOH 46 253 253 HOH HOH B . J 5 HOH 47 254 254 HOH HOH B . J 5 HOH 48 255 255 HOH HOH B . J 5 HOH 49 256 256 HOH HOH B . J 5 HOH 50 257 257 HOH HOH B . J 5 HOH 51 258 258 HOH HOH B . J 5 HOH 52 259 259 HOH HOH B . J 5 HOH 53 260 260 HOH HOH B . J 5 HOH 54 261 261 HOH HOH B . J 5 HOH 55 262 262 HOH HOH B . J 5 HOH 56 263 263 HOH HOH B . J 5 HOH 57 264 264 HOH HOH B . J 5 HOH 58 266 266 HOH HOH B . J 5 HOH 59 267 267 HOH HOH B . J 5 HOH 60 268 268 HOH HOH B . J 5 HOH 61 269 269 HOH HOH B . J 5 HOH 62 270 270 HOH HOH B . J 5 HOH 63 271 271 HOH HOH B . J 5 HOH 64 272 272 HOH HOH B . J 5 HOH 65 273 273 HOH HOH B . J 5 HOH 66 274 274 HOH HOH B . J 5 HOH 67 275 275 HOH HOH B . J 5 HOH 68 276 276 HOH HOH B . J 5 HOH 69 277 277 HOH HOH B . J 5 HOH 70 278 278 HOH HOH B . J 5 HOH 71 279 279 HOH HOH B . J 5 HOH 72 280 280 HOH HOH B . J 5 HOH 73 281 281 HOH HOH B . J 5 HOH 74 282 282 HOH HOH B . J 5 HOH 75 283 283 HOH HOH B . J 5 HOH 76 284 284 HOH HOH B . J 5 HOH 77 285 285 HOH HOH B . J 5 HOH 78 286 286 HOH HOH B . J 5 HOH 79 287 287 HOH HOH B . J 5 HOH 80 288 288 HOH HOH B . J 5 HOH 81 289 289 HOH HOH B . J 5 HOH 82 290 290 HOH HOH B . J 5 HOH 83 291 291 HOH HOH B . J 5 HOH 84 292 292 HOH HOH B . J 5 HOH 85 293 293 HOH HOH B . J 5 HOH 86 294 294 HOH HOH B . J 5 HOH 87 295 295 HOH HOH B . J 5 HOH 88 296 296 HOH HOH B . J 5 HOH 89 297 297 HOH HOH B . J 5 HOH 90 298 298 HOH HOH B . J 5 HOH 91 299 299 HOH HOH B . J 5 HOH 92 300 300 HOH HOH B . J 5 HOH 93 301 301 HOH HOH B . J 5 HOH 94 302 302 HOH HOH B . J 5 HOH 95 303 303 HOH HOH B . J 5 HOH 96 304 304 HOH HOH B . J 5 HOH 97 305 305 HOH HOH B . J 5 HOH 98 306 306 HOH HOH B . J 5 HOH 99 307 307 HOH HOH B . J 5 HOH 100 308 308 HOH HOH B . J 5 HOH 101 309 309 HOH HOH B . J 5 HOH 102 310 310 HOH HOH B . J 5 HOH 103 311 311 HOH HOH B . J 5 HOH 104 313 313 HOH HOH B . J 5 HOH 105 314 314 HOH HOH B . J 5 HOH 106 315 315 HOH HOH B . J 5 HOH 107 316 316 HOH HOH B . J 5 HOH 108 317 317 HOH HOH B . J 5 HOH 109 318 318 HOH HOH B . J 5 HOH 110 319 319 HOH HOH B . J 5 HOH 111 320 320 HOH HOH B . J 5 HOH 112 321 321 HOH HOH B . J 5 HOH 113 322 322 HOH HOH B . J 5 HOH 114 323 323 HOH HOH B . J 5 HOH 115 324 324 HOH HOH B . J 5 HOH 116 325 325 HOH HOH B . J 5 HOH 117 326 326 HOH HOH B . J 5 HOH 118 327 327 HOH HOH B . J 5 HOH 119 328 328 HOH HOH B . J 5 HOH 120 331 331 HOH HOH B . J 5 HOH 121 333 333 HOH HOH B . J 5 HOH 122 334 334 HOH HOH B . J 5 HOH 123 335 335 HOH HOH B . J 5 HOH 124 336 336 HOH HOH B . J 5 HOH 125 337 337 HOH HOH B . J 5 HOH 126 338 338 HOH HOH B . J 5 HOH 127 339 339 HOH HOH B . J 5 HOH 128 340 340 HOH HOH B . J 5 HOH 129 341 341 HOH HOH B . J 5 HOH 130 342 342 HOH HOH B . J 5 HOH 131 343 343 HOH HOH B . J 5 HOH 132 344 344 HOH HOH B . J 5 HOH 133 345 345 HOH HOH B . J 5 HOH 134 346 346 HOH HOH B . J 5 HOH 135 347 347 HOH HOH B . J 5 HOH 136 348 348 HOH HOH B . J 5 HOH 137 349 349 HOH HOH B . J 5 HOH 138 350 350 HOH HOH B . J 5 HOH 139 351 351 HOH HOH B . J 5 HOH 140 352 352 HOH HOH B . J 5 HOH 141 353 353 HOH HOH B . J 5 HOH 142 354 354 HOH HOH B . J 5 HOH 143 355 355 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A U 6 ? N1 ? A U 6 N1 2 1 Y 1 A U 6 ? C2 ? A U 6 C2 3 1 Y 1 A U 6 ? O2 ? A U 6 O2 4 1 Y 1 A U 6 ? N3 ? A U 6 N3 5 1 Y 1 A U 6 ? C4 ? A U 6 C4 6 1 Y 1 A U 6 ? O4 ? A U 6 O4 7 1 Y 1 A U 6 ? C5 ? A U 6 C5 8 1 Y 1 A U 6 ? C6 ? A U 6 C6 9 1 Y 1 B U 103 ? N1 ? B U 83 N1 10 1 Y 1 B U 103 ? C2 ? B U 83 C2 11 1 Y 1 B U 103 ? O2 ? B U 83 O2 12 1 Y 1 B U 103 ? N3 ? B U 83 N3 13 1 Y 1 B U 103 ? C4 ? B U 83 C4 14 1 Y 1 B U 103 ? O4 ? B U 83 O4 15 1 Y 1 B U 103 ? C5 ? B U 83 C5 16 1 Y 1 B U 103 ? C6 ? B U 83 C6 17 1 N 1 A MES 501 ? O1 ? C MES 1 O1 18 1 N 1 A MES 501 ? C2 ? C MES 1 C2 19 1 N 1 A MES 501 ? C3 ? C MES 1 C3 20 1 N 1 A MES 501 ? N4 ? C MES 1 N4 21 1 N 1 A MES 501 ? C5 ? C MES 1 C5 22 1 N 1 A MES 501 ? C6 ? C MES 1 C6 23 1 N 1 A MES 501 ? C7 ? C MES 1 C7 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SOLVE phasing . ? 2 CNS refinement 1.1 ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 2GCV _cell.length_a 180.550 _cell.length_b 40.460 _cell.length_c 71.080 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2GCV _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 18 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.entry_id 2GCV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.66 _exptl_crystal.density_percent_sol 53.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details '14% PEG 4000, 1M LiCl, 100mM MES-NaOH pH 5.6, 5mM MgCl2, 4mM GlcN6P, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'PEG 4000' ? ? ? 1 2 1 LiCl ? ? ? 1 3 1 MES-NaOH ? ? ? 1 4 1 MgCl2 ? ? ? 1 5 1 GlcN6P ? ? ? 1 6 2 'PEG 4000' ? ? ? 1 7 2 LiCl ? ? ? 1 8 2 MES-NaOH ? ? ? 1 9 2 MgCl2 ? ? ? 1 10 2 GlcN6P ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2005-08-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double-crystal, Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91499 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.91499 # _reflns.entry_id 2GCV _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_low 30.00 _reflns.d_resolution_high 2.10 _reflns.number_obs 29365 _reflns.number_all 29365 _reflns.percent_possible_obs 92.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.observed_criterion_sigma_F ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_all 81.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2GCV _refine.ls_number_reflns_obs 29153 _refine.ls_number_reflns_all 29153 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22 _refine.ls_R_factor_R_free 0.24 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 2880 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'A solvent density level of 0.35 and solvent B-factor of 25 were used for the bulk solvent during refinement' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2GCV _refine_analyze.Luzzati_coordinate_error_obs 0.30 _refine_analyze.Luzzati_sigma_a_obs 0.29 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.34 _refine_analyze.Luzzati_sigma_a_free 0.34 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 3055 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 155 _refine_hist.number_atoms_total 3231 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.0043 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.42 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 18.20 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.93 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 2GCV _struct.title 'Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2GCV _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA; Ribozyme; Pseudoknot; Helix, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 3 ? I N N 5 ? J N N 5 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 2 GB AE013165 20517198 2582 ;GGCUUUAAGUUGACGAGGGCAGGGUUUAUCGAGACAUCGGCGGGUGCCCUGCGGUCUUCCUGCGACCGUUAGAGGACUGG UAAAACCACAGGCGACUGUGGCAUAGAGCAGUCCGGGCAGGAA ; ? 2 1 PDB 2GCV 2GCV ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2GCV B 3 ? 125 ? 20517198 2582 ? 2704 ? 23 145 2 2 2GCV A 1 ? 26 ? 2GCV 1 ? 26 ? 1 26 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2GCV C B 1 ? GB 20517198 ? ? insertion 21 1 1 2GCV C B 2 ? GB 20517198 ? ? insertion 22 2 1 2GCV A23 B 125 ? GB 20517198 A 2704 'engineered mutation' 145 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a monomer' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B A 124 "O3'" ? ? ? 1_555 B A23 125 P ? ? B A 144 B A23 145 1_555 ? ? ? ? ? ? ? 1.603 ? ? metalc1 metalc ? ? A C 2 OP2 ? ? ? 1_555 D MG . MG ? ? A C 2 B MG 401 1_555 ? ? ? ? ? ? ? 2.319 ? ? metalc2 metalc ? ? B C 16 OP2 ? ? ? 1_555 D MG . MG ? ? B C 36 B MG 401 1_555 ? ? ? ? ? ? ? 2.107 ? ? metalc3 metalc ? ? B G 17 OP2 ? ? ? 1_555 D MG . MG ? ? B G 37 B MG 401 1_555 ? ? ? ? ? ? ? 2.154 ? ? metalc4 metalc ? ? B A 36 "O2'" ? ? ? 1_555 G MG . MG ? ? B A 56 B MG 404 1_555 ? ? ? ? ? ? ? 2.884 ? ? metalc5 metalc ? ? B C 62 N4 ? ? ? 1_555 F MG . MG ? ? B C 82 B MG 403 1_555 ? ? ? ? ? ? ? 3.072 ? ? metalc6 metalc ? ? B A 90 N7 ? ? ? 1_555 E MG . MG ? ? B A 110 B MG 402 1_555 ? ? ? ? ? ? ? 2.319 ? ? metalc7 metalc ? ? J HOH . O ? ? ? 1_555 E MG . MG ? ? B HOH 250 B MG 402 1_555 ? ? ? ? ? ? ? 2.555 ? ? metalc8 metalc ? ? J HOH . O ? ? ? 1_555 D MG . MG ? ? B HOH 282 B MG 401 1_555 ? ? ? ? ? ? ? 2.128 ? ? metalc9 metalc ? ? J HOH . O ? ? ? 1_555 E MG . MG ? ? B HOH 291 B MG 402 1_555 ? ? ? ? ? ? ? 2.300 ? ? metalc10 metalc ? ? J HOH . O ? ? ? 1_555 E MG . MG ? ? B HOH 293 B MG 402 1_555 ? ? ? ? ? ? ? 2.826 ? ? metalc11 metalc ? ? J HOH . O ? ? ? 1_555 D MG . MG ? ? B HOH 324 B MG 401 1_555 ? ? ? ? ? ? ? 1.992 ? ? metalc12 metalc ? ? J HOH . O ? ? ? 1_555 D MG . MG ? ? B HOH 325 B MG 401 1_555 ? ? ? ? ? ? ? 2.114 ? ? hydrog1 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 44 N1 ? ? A C 2 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 44 O6 ? ? A C 2 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 44 N2 ? ? A C 2 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 43 N3 ? ? A G 3 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 43 O2 ? ? A G 3 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 43 N4 ? ? A G 3 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 42 N1 ? ? A C 4 B G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 42 O6 ? ? A C 4 B G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 42 N2 ? ? A C 4 B G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 41 N1 ? ? A C 5 B G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 41 O6 ? ? A C 5 B G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 41 N2 ? ? A C 5 B G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 7 O6 ? ? ? 1_555 B G 14 N2 ? ? A G 7 B G 34 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog14 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 40 N3 ? ? A G 7 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 40 O2 ? ? A G 7 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 40 N4 ? ? A G 7 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 8 N1 ? ? ? 1_555 B U 13 O2 ? ? A G 8 B U 33 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A G 8 O6 ? ? ? 1_555 B U 13 N3 ? ? A G 8 B U 33 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog19 hydrog ? ? A G 8 N2 ? ? ? 1_555 B A 38 N3 ? ? A G 8 B A 58 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog20 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 12 N3 ? ? A A 9 B U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 12 O4 ? ? A A 9 B U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 10 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 10 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 10 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 11 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 11 B A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 11 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 11 B A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 11 O2 ? ? ? 1_555 B G 96 N2 ? ? A U 11 B G 116 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog28 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 12 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 12 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A A 13 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 13 B U 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 13 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 13 B U 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A A 14 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 14 B U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 14 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 14 B U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 15 N1 ? ? ? 1_555 B U 6 N3 ? ? A A 15 B U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 15 N6 ? ? ? 1_555 B U 6 O4 ? ? A A 15 B U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 16 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 16 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 16 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 16 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 16 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 17 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 17 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 17 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 17 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 17 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 17 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 18 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 18 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 18 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 18 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 18 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 18 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B G 11 N2 ? ? ? 1_555 B A 97 N3 ? ? B G 31 B A 117 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog46 hydrog ? ? B A 15 N3 ? ? ? 1_555 B C 16 N4 ? ? B A 35 B C 36 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog47 hydrog ? ? B C 16 N3 ? ? ? 1_555 B G 33 N1 ? ? B C 36 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B C 16 N4 ? ? ? 1_555 B G 33 O6 ? ? B C 36 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B C 16 O2 ? ? ? 1_555 B G 33 N2 ? ? B C 36 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B G 17 N1 ? ? ? 1_555 B C 32 N3 ? ? B G 37 B C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B G 17 N2 ? ? ? 1_555 B C 32 O2 ? ? B G 37 B C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B G 17 O6 ? ? ? 1_555 B C 32 N4 ? ? B G 37 B C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B G 17 N2 ? ? ? 1_555 B A 107 N1 ? ? B G 37 B A 127 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog54 hydrog ? ? B A 18 N1 ? ? ? 1_555 B U 31 N3 ? ? B A 38 B U 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B A 18 N6 ? ? ? 1_555 B U 31 O4 ? ? B A 38 B U 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B A 18 N3 ? ? ? 1_555 B G 108 N2 ? ? B A 38 B G 128 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog57 hydrog ? ? B C 22 N3 ? ? ? 1_555 B G 53 N1 ? ? B C 42 B G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B C 22 N4 ? ? ? 1_555 B G 53 O6 ? ? B C 42 B G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B C 22 O2 ? ? ? 1_555 B G 53 N2 ? ? B C 42 B G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B A 23 N1 ? ? ? 1_555 B U 52 N3 ? ? B A 43 B U 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B A 23 N6 ? ? ? 1_555 B U 52 O4 ? ? B A 43 B U 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B G 24 N1 ? ? ? 1_555 B C 51 N3 ? ? B G 44 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B G 24 N2 ? ? ? 1_555 B C 51 O2 ? ? B G 44 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B G 24 O6 ? ? ? 1_555 B C 51 N4 ? ? B G 44 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B G 25 N1 ? ? ? 1_555 B C 50 N3 ? ? B G 45 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B G 25 N2 ? ? ? 1_555 B C 50 O2 ? ? B G 45 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B G 25 O6 ? ? ? 1_555 B C 50 N4 ? ? B G 45 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B G 26 N1 ? ? ? 1_555 B C 49 N3 ? ? B G 46 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B G 26 N2 ? ? ? 1_555 B C 49 O2 ? ? B G 46 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B G 26 O6 ? ? ? 1_555 B C 49 N4 ? ? B G 46 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B U 27 N3 ? ? ? 1_555 B G 48 O6 ? ? B U 47 B G 68 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog72 hydrog ? ? B U 27 O2 ? ? ? 1_555 B G 48 N1 ? ? B U 47 B G 68 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog73 hydrog ? ? B U 28 N3 ? ? ? 1_555 B A 30 N7 ? ? B U 48 B A 50 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog74 hydrog ? ? B U 28 O4 ? ? ? 1_555 B A 30 N6 ? ? B U 48 B A 50 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog75 hydrog ? ? B G 33 N2 ? ? ? 1_555 B A 84 N1 ? ? B G 53 B A 104 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog76 hydrog ? ? B A 34 N1 ? ? ? 1_555 B U 39 N3 ? ? B A 54 B U 59 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog77 hydrog ? ? B A 34 N6 ? ? ? 1_555 B U 39 O2 ? ? B A 54 B U 59 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog78 hydrog ? ? B C 54 N3 ? ? ? 1_555 B G 70 N1 ? ? B C 74 B G 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B C 54 N4 ? ? ? 1_555 B G 70 O6 ? ? B C 74 B G 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B C 54 O2 ? ? ? 1_555 B G 70 N2 ? ? B C 74 B G 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B G 55 N1 ? ? ? 1_555 B C 69 N3 ? ? B G 75 B C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B G 55 N2 ? ? ? 1_555 B C 69 O2 ? ? B G 75 B C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B G 55 O6 ? ? ? 1_555 B C 69 N4 ? ? B G 75 B C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 55 N2 ? ? ? 1_555 B A 73 N3 ? ? B G 75 B A 93 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog85 hydrog ? ? B G 56 N1 ? ? ? 1_555 B C 68 N3 ? ? B G 76 B C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B G 56 N2 ? ? ? 1_555 B C 68 O2 ? ? B G 76 B C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B G 56 O6 ? ? ? 1_555 B C 68 N4 ? ? B G 76 B C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B U 57 N3 ? ? ? 1_555 B A 67 N1 ? ? B U 77 B A 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B U 57 O4 ? ? ? 1_555 B A 67 N6 ? ? B U 77 B A 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B C 58 N3 ? ? ? 1_555 B G 66 N1 ? ? B C 78 B G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B C 58 N4 ? ? ? 1_555 B G 66 O6 ? ? B C 78 B G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B C 58 O2 ? ? ? 1_555 B G 66 N2 ? ? B C 78 B G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B U 59 O2 ? ? ? 1_555 B C 61 N4 ? ? B U 79 B C 81 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog94 hydrog ? ? B U 60 N3 ? ? ? 1_555 B A 124 N1 ? ? B U 80 B A 144 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B U 60 O4 ? ? ? 1_555 B A 124 N6 ? ? B U 80 B A 144 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B C 61 N3 ? ? ? 1_555 B G 123 N1 ? ? B C 81 B G 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B C 61 N4 ? ? ? 1_555 B G 123 O6 ? ? B C 81 B G 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B C 61 O2 ? ? ? 1_555 B G 123 N2 ? ? B C 81 B G 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B C 62 N3 ? ? ? 1_555 B G 122 N1 ? ? B C 82 B G 142 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B C 62 N4 ? ? ? 1_555 B G 122 O6 ? ? B C 82 B G 142 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B C 62 O2 ? ? ? 1_555 B G 122 N2 ? ? B C 82 B G 142 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B U 63 N3 ? ? ? 1_555 B A 121 N1 ? ? B U 83 B A 141 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B U 63 O4 ? ? ? 1_555 B A 121 N6 ? ? B U 83 B A 141 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B G 64 N1 ? ? ? 1_555 B C 120 N3 ? ? B G 84 B C 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B G 64 N2 ? ? ? 1_555 B C 120 O2 ? ? B G 84 B C 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B G 64 O6 ? ? ? 1_555 B C 120 N4 ? ? B G 84 B C 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B C 65 N3 ? ? ? 1_555 B G 119 N1 ? ? B C 85 B G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B C 65 N4 ? ? ? 1_555 B G 119 O6 ? ? B C 85 B G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B C 65 O2 ? ? ? 1_555 B G 119 N2 ? ? B C 85 B G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B G 70 N2 ? ? ? 1_555 B U 71 O4 ? ? B G 90 B U 91 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog111 hydrog ? ? B A 75 N6 ? ? ? 1_555 B G 117 N3 ? ? B A 95 B G 137 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog112 hydrog ? ? B A 75 N7 ? ? ? 1_555 B G 117 N2 ? ? B A 95 B G 137 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog113 hydrog ? ? B G 76 N1 ? ? ? 1_555 B C 116 N3 ? ? B G 96 B C 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? B G 76 N2 ? ? ? 1_555 B C 116 O2 ? ? B G 96 B C 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? B G 76 O6 ? ? ? 1_555 B C 116 N4 ? ? B G 96 B C 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? B G 77 N1 ? ? ? 1_555 B C 115 N3 ? ? B G 97 B C 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? B G 77 N2 ? ? ? 1_555 B C 115 O2 ? ? B G 97 B C 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? B G 77 O6 ? ? ? 1_555 B C 115 N4 ? ? B G 97 B C 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? B A 78 N1 ? ? ? 1_555 B U 114 N3 ? ? B A 98 B U 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? B A 78 N6 ? ? ? 1_555 B U 114 O4 ? ? B A 98 B U 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? B C 79 N3 ? ? ? 1_555 B G 113 N1 ? ? B C 99 B G 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? B C 79 N4 ? ? ? 1_555 B G 113 O6 ? ? B C 99 B G 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? B C 79 O2 ? ? ? 1_555 B G 113 N2 ? ? B C 99 B G 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? B U 80 N3 ? ? ? 1_555 B A 112 N1 ? ? B U 100 B A 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? B U 80 O4 ? ? ? 1_555 B A 112 N6 ? ? B U 100 B A 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? B G 81 N1 ? ? ? 1_555 B C 111 N3 ? ? B G 101 B C 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? B G 81 N2 ? ? ? 1_555 B C 111 O2 ? ? B G 101 B C 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? B G 81 O6 ? ? ? 1_555 B C 111 N4 ? ? B G 101 B C 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? B G 82 N2 ? ? ? 1_555 B A 109 N7 ? ? B G 102 B A 129 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog130 hydrog ? ? B A 85 N6 ? ? ? 1_555 B U 106 O2 ? ? B A 105 B U 126 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog131 hydrog ? ? B A 85 N7 ? ? ? 1_555 B U 106 N3 ? ? B A 105 B U 126 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog132 hydrog ? ? B A 86 N6 ? ? ? 1_555 B A 105 N1 ? ? B A 106 B A 125 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog133 hydrog ? ? B A 86 N7 ? ? ? 1_555 B A 105 N6 ? ? B A 106 B A 125 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog134 hydrog ? ? B A 87 N6 ? ? ? 1_555 B C 104 O2 ? ? B A 107 B C 124 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog135 hydrog ? ? B C 88 N3 ? ? ? 1_555 B G 103 N1 ? ? B C 108 B G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog136 hydrog ? ? B C 88 N4 ? ? ? 1_555 B G 103 O6 ? ? B C 108 B G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog137 hydrog ? ? B C 88 O2 ? ? ? 1_555 B G 103 N2 ? ? B C 108 B G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog138 hydrog ? ? B C 89 N3 ? ? ? 1_555 B G 102 N1 ? ? B C 109 B G 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? B C 89 N4 ? ? ? 1_555 B G 102 O6 ? ? B C 109 B G 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? B C 89 O2 ? ? ? 1_555 B G 102 N2 ? ? B C 109 B G 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog141 hydrog ? ? B A 90 N1 ? ? ? 1_555 B U 101 N3 ? ? B A 110 B U 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? B A 90 N6 ? ? ? 1_555 B U 101 O4 ? ? B A 110 B U 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? B C 91 N3 ? ? ? 1_555 B G 100 N1 ? ? B C 111 B G 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog144 hydrog ? ? B C 91 N4 ? ? ? 1_555 B G 100 O6 ? ? B C 111 B G 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog145 hydrog ? ? B C 91 O2 ? ? ? 1_555 B G 100 N2 ? ? B C 111 B G 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog146 hydrog ? ? B A 92 N1 ? ? ? 1_555 B U 99 N3 ? ? B A 112 B U 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog147 hydrog ? ? B A 92 N6 ? ? ? 1_555 B U 99 O4 ? ? B A 112 B U 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog148 hydrog ? ? B G 93 N1 ? ? ? 1_555 B C 98 N3 ? ? B G 113 B C 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog149 hydrog ? ? B G 93 N2 ? ? ? 1_555 B C 98 O2 ? ? B G 113 B C 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog150 hydrog ? ? B G 93 O6 ? ? ? 1_555 B C 98 N4 ? ? B G 113 B C 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog151 hydrog ? ? B G 94 N2 ? ? ? 1_555 B A 97 N7 ? ? B G 114 B A 117 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A C 2 ? A C 2 ? 1_555 MG ? D MG . ? B MG 401 ? 1_555 OP2 ? B C 16 ? B C 36 ? 1_555 174.8 ? 2 OP2 ? A C 2 ? A C 2 ? 1_555 MG ? D MG . ? B MG 401 ? 1_555 OP2 ? B G 17 ? B G 37 ? 1_555 85.7 ? 3 OP2 ? B C 16 ? B C 36 ? 1_555 MG ? D MG . ? B MG 401 ? 1_555 OP2 ? B G 17 ? B G 37 ? 1_555 95.7 ? 4 OP2 ? A C 2 ? A C 2 ? 1_555 MG ? D MG . ? B MG 401 ? 1_555 O ? J HOH . ? B HOH 282 ? 1_555 92.8 ? 5 OP2 ? B C 16 ? B C 36 ? 1_555 MG ? D MG . ? B MG 401 ? 1_555 O ? J HOH . ? B HOH 282 ? 1_555 92.3 ? 6 OP2 ? B G 17 ? B G 37 ? 1_555 MG ? D MG . ? B MG 401 ? 1_555 O ? J HOH . ? B HOH 282 ? 1_555 85.9 ? 7 OP2 ? A C 2 ? A C 2 ? 1_555 MG ? D MG . ? B MG 401 ? 1_555 O ? J HOH . ? B HOH 324 ? 1_555 86.7 ? 8 OP2 ? B C 16 ? B C 36 ? 1_555 MG ? D MG . ? B MG 401 ? 1_555 O ? J HOH . ? B HOH 324 ? 1_555 88.1 ? 9 OP2 ? B G 17 ? B G 37 ? 1_555 MG ? D MG . ? B MG 401 ? 1_555 O ? J HOH . ? B HOH 324 ? 1_555 99.2 ? 10 O ? J HOH . ? B HOH 282 ? 1_555 MG ? D MG . ? B MG 401 ? 1_555 O ? J HOH . ? B HOH 324 ? 1_555 174.9 ? 11 OP2 ? A C 2 ? A C 2 ? 1_555 MG ? D MG . ? B MG 401 ? 1_555 O ? J HOH . ? B HOH 325 ? 1_555 92.5 ? 12 OP2 ? B C 16 ? B C 36 ? 1_555 MG ? D MG . ? B MG 401 ? 1_555 O ? J HOH . ? B HOH 325 ? 1_555 86.7 ? 13 OP2 ? B G 17 ? B G 37 ? 1_555 MG ? D MG . ? B MG 401 ? 1_555 O ? J HOH . ? B HOH 325 ? 1_555 172.7 ? 14 O ? J HOH . ? B HOH 282 ? 1_555 MG ? D MG . ? B MG 401 ? 1_555 O ? J HOH . ? B HOH 325 ? 1_555 87.2 ? 15 O ? J HOH . ? B HOH 324 ? 1_555 MG ? D MG . ? B MG 401 ? 1_555 O ? J HOH . ? B HOH 325 ? 1_555 87.7 ? 16 N7 ? B A 90 ? B A 110 ? 1_555 MG ? E MG . ? B MG 402 ? 1_555 O ? J HOH . ? B HOH 250 ? 1_555 113.6 ? 17 N7 ? B A 90 ? B A 110 ? 1_555 MG ? E MG . ? B MG 402 ? 1_555 O ? J HOH . ? B HOH 291 ? 1_555 106.7 ? 18 O ? J HOH . ? B HOH 250 ? 1_555 MG ? E MG . ? B MG 402 ? 1_555 O ? J HOH . ? B HOH 291 ? 1_555 90.4 ? 19 N7 ? B A 90 ? B A 110 ? 1_555 MG ? E MG . ? B MG 402 ? 1_555 O ? J HOH . ? B HOH 293 ? 1_555 140.7 ? 20 O ? J HOH . ? B HOH 250 ? 1_555 MG ? E MG . ? B MG 402 ? 1_555 O ? J HOH . ? B HOH 293 ? 1_555 103.4 ? 21 O ? J HOH . ? B HOH 291 ? 1_555 MG ? E MG . ? B MG 402 ? 1_555 O ? J HOH . ? B HOH 293 ? 1_555 85.2 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MG 401 ? 8 'BINDING SITE FOR RESIDUE MG B 401' AC2 Software B MG 402 ? 4 'BINDING SITE FOR RESIDUE MG B 402' AC3 Software B MG 403 ? 3 'BINDING SITE FOR RESIDUE MG B 403' AC4 Software B MG 404 ? 3 'BINDING SITE FOR RESIDUE MG B 404' AC5 Software A MES 501 ? 4 'BINDING SITE FOR RESIDUE MES A 501' AC6 Software B MES 502 ? 6 'BINDING SITE FOR RESIDUE MES B 502' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 G A 1 ? G A 1 . ? 1_555 ? 2 AC1 8 C A 2 ? C A 2 . ? 1_555 ? 3 AC1 8 A B 15 ? A B 35 . ? 1_555 ? 4 AC1 8 C B 16 ? C B 36 . ? 1_555 ? 5 AC1 8 G B 17 ? G B 37 . ? 1_555 ? 6 AC1 8 HOH J . ? HOH B 282 . ? 1_555 ? 7 AC1 8 HOH J . ? HOH B 324 . ? 1_555 ? 8 AC1 8 HOH J . ? HOH B 325 . ? 1_555 ? 9 AC2 4 A B 90 ? A B 110 . ? 1_555 ? 10 AC2 4 HOH J . ? HOH B 250 . ? 1_555 ? 11 AC2 4 HOH J . ? HOH B 291 . ? 1_555 ? 12 AC2 4 HOH J . ? HOH B 293 . ? 1_555 ? 13 AC3 3 U B 59 ? U B 79 . ? 1_555 ? 14 AC3 3 C B 61 ? C B 81 . ? 1_555 ? 15 AC3 3 C B 62 ? C B 82 . ? 1_555 ? 16 AC4 3 A B 36 ? A B 56 . ? 1_555 ? 17 AC4 3 C B 37 ? C B 57 . ? 1_555 ? 18 AC4 3 U B 39 ? U B 59 . ? 1_555 ? 19 AC5 4 G A 1 ? G A 1 . ? 1_555 ? 20 AC5 4 C A 2 ? C A 2 . ? 1_555 ? 21 AC5 4 G B 45 ? G B 65 . ? 1_555 ? 22 AC5 4 G B 46 ? G B 66 . ? 1_555 ? 23 AC6 6 C A 2 ? C A 2 . ? 1_555 ? 24 AC6 6 G B 20 ? G B 40 . ? 1_555 ? 25 AC6 6 G B 45 ? G B 65 . ? 1_555 ? 26 AC6 6 G B 46 ? G B 66 . ? 1_555 ? 27 AC6 6 U B 47 ? U B 67 . ? 1_555 ? 28 AC6 6 A B 90 ? A B 110 . ? 3_546 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C2'" A C 5 ? ? "C3'" A C 5 ? ? "O3'" A C 5 ? ? 129.95 113.70 16.25 1.60 N 2 1 N9 B G 41 ? ? "C1'" B G 41 ? ? "C2'" B G 41 ? ? 122.74 114.00 8.74 1.30 N 3 1 N1 B U 48 ? ? "C1'" B U 48 ? ? "C2'" B U 48 ? ? 125.61 114.00 11.61 1.30 N 4 1 "O4'" B U 48 ? ? "C1'" B U 48 ? ? N1 B U 48 ? ? 113.23 108.50 4.73 0.70 N 5 1 "C2'" B C 57 ? ? "C3'" B C 57 ? ? "O3'" B C 57 ? ? 128.05 113.70 14.35 1.60 N 6 1 "O4'" B G 94 ? ? "C1'" B G 94 ? ? N9 B G 94 ? ? 113.76 108.50 5.26 0.70 N 7 1 "C2'" B G 102 ? ? "C3'" B G 102 ? ? "O3'" B G 102 ? ? 127.30 113.70 13.60 1.60 N 8 1 "C2'" B U 103 ? ? "C3'" B U 103 ? ? "O3'" B U 103 ? ? 126.74 113.70 13.04 1.60 N 9 1 N9 B G 130 ? ? "C1'" B G 130 ? ? "C2'" B G 130 ? ? 124.36 114.00 10.36 1.30 N 10 1 N9 B G 138 ? ? "C1'" B G 138 ? ? "C2'" B G 138 ? ? 122.55 114.00 8.55 1.30 N # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id "C3'" _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id C _pdbx_validate_chiral.auth_seq_id 5 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id A23 _pdbx_struct_mod_residue.label_seq_id 125 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id A23 _pdbx_struct_mod_residue.auth_seq_id 145 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id A _pdbx_struct_mod_residue.details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A U 21 ? A U 21 2 1 Y 1 A G 22 ? A G 22 3 1 Y 1 A C 23 ? A C 23 4 1 Y 1 A A 24 ? A A 24 5 1 Y 1 A C 25 ? A C 25 6 1 Y 1 A U 26 ? A U 26 7 1 Y 1 B C 21 ? B C 1 8 1 Y 1 B C 22 ? B C 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 A23 PC P N S 38 A23 O1C O N N 39 A23 O2C O N N 40 A23 P P N N 41 A23 OP1 O N N 42 A23 OP2 O N N 43 A23 OP3 O N N 44 A23 "O5'" O N N 45 A23 "C5'" C N N 46 A23 "C4'" C N R 47 A23 "O4'" O N N 48 A23 "C3'" C N R 49 A23 "O3'" O N N 50 A23 "C2'" C N R 51 A23 "O2'" O N N 52 A23 "C1'" C N R 53 A23 N9 N Y N 54 A23 C8 C Y N 55 A23 N7 N Y N 56 A23 C5 C Y N 57 A23 C6 C Y N 58 A23 N6 N N N 59 A23 N1 N Y N 60 A23 C2 C Y N 61 A23 N3 N Y N 62 A23 C4 C Y N 63 A23 HOC2 H N N 64 A23 HOP2 H N N 65 A23 HOP3 H N N 66 A23 "H5'" H N N 67 A23 "H5''" H N N 68 A23 "H4'" H N N 69 A23 "H3'" H N N 70 A23 "H2'" H N N 71 A23 "H1'" H N N 72 A23 H8 H N N 73 A23 HN61 H N N 74 A23 HN62 H N N 75 A23 H2 H N N 76 C OP3 O N N 77 C P P N N 78 C OP1 O N N 79 C OP2 O N N 80 C "O5'" O N N 81 C "C5'" C N N 82 C "C4'" C N R 83 C "O4'" O N N 84 C "C3'" C N S 85 C "O3'" O N N 86 C "C2'" C N R 87 C "O2'" O N N 88 C "C1'" C N R 89 C N1 N N N 90 C C2 C N N 91 C O2 O N N 92 C N3 N N N 93 C C4 C N N 94 C N4 N N N 95 C C5 C N N 96 C C6 C N N 97 C HOP3 H N N 98 C HOP2 H N N 99 C "H5'" H N N 100 C "H5''" H N N 101 C "H4'" H N N 102 C "H3'" H N N 103 C "HO3'" H N N 104 C "H2'" H N N 105 C "HO2'" H N N 106 C "H1'" H N N 107 C H41 H N N 108 C H42 H N N 109 C H5 H N N 110 C H6 H N N 111 G OP3 O N N 112 G P P N N 113 G OP1 O N N 114 G OP2 O N N 115 G "O5'" O N N 116 G "C5'" C N N 117 G "C4'" C N R 118 G "O4'" O N N 119 G "C3'" C N S 120 G "O3'" O N N 121 G "C2'" C N R 122 G "O2'" O N N 123 G "C1'" C N R 124 G N9 N Y N 125 G C8 C Y N 126 G N7 N Y N 127 G C5 C Y N 128 G C6 C N N 129 G O6 O N N 130 G N1 N N N 131 G C2 C N N 132 G N2 N N N 133 G N3 N N N 134 G C4 C Y N 135 G HOP3 H N N 136 G HOP2 H N N 137 G "H5'" H N N 138 G "H5''" H N N 139 G "H4'" H N N 140 G "H3'" H N N 141 G "HO3'" H N N 142 G "H2'" H N N 143 G "HO2'" H N N 144 G "H1'" H N N 145 G H8 H N N 146 G H1 H N N 147 G H21 H N N 148 G H22 H N N 149 HOH O O N N 150 HOH H1 H N N 151 HOH H2 H N N 152 MES O1 O N N 153 MES C2 C N N 154 MES C3 C N N 155 MES N4 N N N 156 MES C5 C N N 157 MES C6 C N N 158 MES C7 C N N 159 MES C8 C N N 160 MES S S N N 161 MES O1S O N N 162 MES O2S O N N 163 MES O3S O N N 164 MES H21 H N N 165 MES H22 H N N 166 MES H31 H N N 167 MES H32 H N N 168 MES HN4 H N N 169 MES H51 H N N 170 MES H52 H N N 171 MES H61 H N N 172 MES H62 H N N 173 MES H71 H N N 174 MES H72 H N N 175 MES H81 H N N 176 MES H82 H N N 177 MG MG MG N N 178 U OP3 O N N 179 U P P N N 180 U OP1 O N N 181 U OP2 O N N 182 U "O5'" O N N 183 U "C5'" C N N 184 U "C4'" C N R 185 U "O4'" O N N 186 U "C3'" C N S 187 U "O3'" O N N 188 U "C2'" C N R 189 U "O2'" O N N 190 U "C1'" C N R 191 U N1 N N N 192 U C2 C N N 193 U O2 O N N 194 U N3 N N N 195 U C4 C N N 196 U O4 O N N 197 U C5 C N N 198 U C6 C N N 199 U HOP3 H N N 200 U HOP2 H N N 201 U "H5'" H N N 202 U "H5''" H N N 203 U "H4'" H N N 204 U "H3'" H N N 205 U "HO3'" H N N 206 U "H2'" H N N 207 U "HO2'" H N N 208 U "H1'" H N N 209 U H3 H N N 210 U H5 H N N 211 U H6 H N N 212 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 A23 PC O1C doub N N 40 A23 PC O2C sing N N 41 A23 PC "O3'" sing N N 42 A23 PC "O2'" sing N N 43 A23 O2C HOC2 sing N N 44 A23 P OP1 doub N N 45 A23 P OP2 sing N N 46 A23 P OP3 sing N N 47 A23 P "O5'" sing N N 48 A23 OP2 HOP2 sing N N 49 A23 OP3 HOP3 sing N N 50 A23 "O5'" "C5'" sing N N 51 A23 "C5'" "C4'" sing N N 52 A23 "C5'" "H5'" sing N N 53 A23 "C5'" "H5''" sing N N 54 A23 "C4'" "O4'" sing N N 55 A23 "C4'" "C3'" sing N N 56 A23 "C4'" "H4'" sing N N 57 A23 "O4'" "C1'" sing N N 58 A23 "C3'" "O3'" sing N N 59 A23 "C3'" "C2'" sing N N 60 A23 "C3'" "H3'" sing N N 61 A23 "C2'" "O2'" sing N N 62 A23 "C2'" "C1'" sing N N 63 A23 "C2'" "H2'" sing N N 64 A23 "C1'" N9 sing N N 65 A23 "C1'" "H1'" sing N N 66 A23 N9 C8 sing Y N 67 A23 N9 C4 sing Y N 68 A23 C8 N7 doub Y N 69 A23 C8 H8 sing N N 70 A23 N7 C5 sing Y N 71 A23 C5 C6 sing Y N 72 A23 C5 C4 doub Y N 73 A23 C6 N6 sing N N 74 A23 C6 N1 doub Y N 75 A23 N6 HN61 sing N N 76 A23 N6 HN62 sing N N 77 A23 N1 C2 sing Y N 78 A23 C2 N3 doub Y N 79 A23 C2 H2 sing N N 80 A23 N3 C4 sing Y N 81 C OP3 P sing N N 82 C OP3 HOP3 sing N N 83 C P OP1 doub N N 84 C P OP2 sing N N 85 C P "O5'" sing N N 86 C OP2 HOP2 sing N N 87 C "O5'" "C5'" sing N N 88 C "C5'" "C4'" sing N N 89 C "C5'" "H5'" sing N N 90 C "C5'" "H5''" sing N N 91 C "C4'" "O4'" sing N N 92 C "C4'" "C3'" sing N N 93 C "C4'" "H4'" sing N N 94 C "O4'" "C1'" sing N N 95 C "C3'" "O3'" sing N N 96 C "C3'" "C2'" sing N N 97 C "C3'" "H3'" sing N N 98 C "O3'" "HO3'" sing N N 99 C "C2'" "O2'" sing N N 100 C "C2'" "C1'" sing N N 101 C "C2'" "H2'" sing N N 102 C "O2'" "HO2'" sing N N 103 C "C1'" N1 sing N N 104 C "C1'" "H1'" sing N N 105 C N1 C2 sing N N 106 C N1 C6 sing N N 107 C C2 O2 doub N N 108 C C2 N3 sing N N 109 C N3 C4 doub N N 110 C C4 N4 sing N N 111 C C4 C5 sing N N 112 C N4 H41 sing N N 113 C N4 H42 sing N N 114 C C5 C6 doub N N 115 C C5 H5 sing N N 116 C C6 H6 sing N N 117 G OP3 P sing N N 118 G OP3 HOP3 sing N N 119 G P OP1 doub N N 120 G P OP2 sing N N 121 G P "O5'" sing N N 122 G OP2 HOP2 sing N N 123 G "O5'" "C5'" sing N N 124 G "C5'" "C4'" sing N N 125 G "C5'" "H5'" sing N N 126 G "C5'" "H5''" sing N N 127 G "C4'" "O4'" sing N N 128 G "C4'" "C3'" sing N N 129 G "C4'" "H4'" sing N N 130 G "O4'" "C1'" sing N N 131 G "C3'" "O3'" sing N N 132 G "C3'" "C2'" sing N N 133 G "C3'" "H3'" sing N N 134 G "O3'" "HO3'" sing N N 135 G "C2'" "O2'" sing N N 136 G "C2'" "C1'" sing N N 137 G "C2'" "H2'" sing N N 138 G "O2'" "HO2'" sing N N 139 G "C1'" N9 sing N N 140 G "C1'" "H1'" sing N N 141 G N9 C8 sing Y N 142 G N9 C4 sing Y N 143 G C8 N7 doub Y N 144 G C8 H8 sing N N 145 G N7 C5 sing Y N 146 G C5 C6 sing N N 147 G C5 C4 doub Y N 148 G C6 O6 doub N N 149 G C6 N1 sing N N 150 G N1 C2 sing N N 151 G N1 H1 sing N N 152 G C2 N2 sing N N 153 G C2 N3 doub N N 154 G N2 H21 sing N N 155 G N2 H22 sing N N 156 G N3 C4 sing N N 157 HOH O H1 sing N N 158 HOH O H2 sing N N 159 MES O1 C2 sing N N 160 MES O1 C6 sing N N 161 MES C2 C3 sing N N 162 MES C2 H21 sing N N 163 MES C2 H22 sing N N 164 MES C3 N4 sing N N 165 MES C3 H31 sing N N 166 MES C3 H32 sing N N 167 MES N4 C5 sing N N 168 MES N4 C7 sing N N 169 MES N4 HN4 sing N N 170 MES C5 C6 sing N N 171 MES C5 H51 sing N N 172 MES C5 H52 sing N N 173 MES C6 H61 sing N N 174 MES C6 H62 sing N N 175 MES C7 C8 sing N N 176 MES C7 H71 sing N N 177 MES C7 H72 sing N N 178 MES C8 S sing N N 179 MES C8 H81 sing N N 180 MES C8 H82 sing N N 181 MES S O1S doub N N 182 MES S O2S doub N N 183 MES S O3S sing N N 184 U OP3 P sing N N 185 U OP3 HOP3 sing N N 186 U P OP1 doub N N 187 U P OP2 sing N N 188 U P "O5'" sing N N 189 U OP2 HOP2 sing N N 190 U "O5'" "C5'" sing N N 191 U "C5'" "C4'" sing N N 192 U "C5'" "H5'" sing N N 193 U "C5'" "H5''" sing N N 194 U "C4'" "O4'" sing N N 195 U "C4'" "C3'" sing N N 196 U "C4'" "H4'" sing N N 197 U "O4'" "C1'" sing N N 198 U "C3'" "O3'" sing N N 199 U "C3'" "C2'" sing N N 200 U "C3'" "H3'" sing N N 201 U "O3'" "HO3'" sing N N 202 U "C2'" "O2'" sing N N 203 U "C2'" "C1'" sing N N 204 U "C2'" "H2'" sing N N 205 U "O2'" "HO2'" sing N N 206 U "C1'" N1 sing N N 207 U "C1'" "H1'" sing N N 208 U N1 C2 sing N N 209 U N1 C6 sing N N 210 U C2 O2 doub N N 211 U C2 N3 sing N N 212 U N3 C4 sing N N 213 U N3 H3 sing N N 214 U C4 O4 doub N N 215 U C4 C5 sing N N 216 U C5 C6 doub N N 217 U C5 H5 sing N N 218 U C6 H6 sing N N 219 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2GCV 'double helix' 2GCV 'a-form double helix' 2GCV 'mismatched base pair' 2GCV 'triple helix' 2GCV 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 2 1_555 B G 44 1_555 0.184 -0.161 -0.134 4.727 -6.120 2.093 1 A_C2:G64_B A 2 ? B 64 ? 19 1 1 A G 3 1_555 B C 43 1_555 -0.478 -0.270 -0.008 -1.359 -4.821 0.814 2 A_G3:C63_B A 3 ? B 63 ? 19 1 1 A C 4 1_555 B G 42 1_555 0.329 -0.161 0.148 -2.748 -5.824 2.694 3 A_C4:G62_B A 4 ? B 62 ? 19 1 1 A C 5 1_555 B G 41 1_555 0.208 -0.045 -0.116 -0.132 -0.230 1.690 4 A_C5:G61_B A 5 ? B 61 ? 19 1 1 A G 7 1_555 B C 40 1_555 -0.240 -0.170 -0.212 -3.459 -4.778 2.180 5 A_G7:C60_B A 7 ? B 60 ? 19 1 1 A G 8 1_555 B U 13 1_555 -2.290 -0.355 0.208 21.810 -10.342 -18.841 6 A_G8:U33_B A 8 ? B 33 ? 28 ? 1 A A 9 1_555 B U 12 1_555 0.073 -0.276 0.101 16.424 -12.182 -3.058 7 A_A9:U32_B A 9 ? B 32 ? 20 1 1 A C 10 1_555 B G 11 1_555 0.206 -0.234 -0.055 4.894 -20.542 3.268 8 A_C10:G31_B A 10 ? B 31 ? 19 1 1 A U 11 1_555 B A 10 1_555 -0.151 -0.187 0.102 -4.458 -14.120 3.777 9 A_U11:A30_B A 11 ? B 30 ? 20 1 1 A U 12 1_555 B A 9 1_555 0.163 -0.333 -0.038 3.219 -12.343 0.571 10 A_U12:A29_B A 12 ? B 29 ? 20 1 1 A A 13 1_555 B U 8 1_555 0.323 -0.141 -0.036 -1.135 -15.664 8.679 11 A_A13:U28_B A 13 ? B 28 ? 20 1 1 A A 14 1_555 B U 7 1_555 -0.190 -0.161 0.218 10.524 -12.425 1.479 12 A_A14:U27_B A 14 ? B 27 ? 20 1 1 A A 15 1_555 B U 6 1_555 0.388 -0.222 0.564 8.648 -11.077 3.358 13 A_A15:U26_B A 15 ? B 26 ? 20 1 1 A G 16 1_555 B C 5 1_555 -0.145 -0.236 0.358 7.251 -10.628 2.709 14 A_G16:C25_B A 16 ? B 25 ? 19 1 1 A C 17 1_555 B G 4 1_555 0.407 0.012 -0.117 5.789 -10.595 3.061 15 A_C17:G24_B A 17 ? B 24 ? 19 1 1 A C 18 1_555 B G 3 1_555 0.364 -0.155 0.330 -1.972 -4.270 0.138 16 A_C18:G23_B A 18 ? B 23 ? 19 1 1 B U 31 1_555 B A 18 1_555 0.140 -0.199 0.069 -4.899 -8.228 4.888 17 B_U51:A38_B B 51 ? B 38 ? 20 1 1 B C 32 1_555 B G 17 1_555 0.397 -0.116 0.128 -7.875 -0.654 0.875 18 B_C52:G37_B B 52 ? B 37 ? 19 1 1 B G 33 1_555 B C 16 1_555 -0.343 -0.183 0.286 9.541 2.147 -0.047 19 B_G53:C36_B B 53 ? B 36 ? 19 1 1 B A 34 1_555 B U 39 1_555 0.191 1.051 -0.105 -6.731 9.281 171.778 20 B_A54:U59_B B 54 ? B 59 ? 21 2 1 B A 30 1_555 B U 28 1_555 0.316 -3.537 0.469 -0.663 7.264 61.966 21 B_A50:U48_B B 50 ? B 48 ? 23 3 1 B G 48 1_555 B U 27 1_555 -2.369 -0.688 0.425 19.328 -13.742 -4.248 22 B_G68:U47_B B 68 ? B 47 ? 28 ? 1 B C 49 1_555 B G 26 1_555 0.095 -0.109 -0.153 19.092 -24.687 1.891 23 B_C69:G46_B B 69 ? B 46 ? 19 1 1 B C 50 1_555 B G 25 1_555 -0.074 -0.236 -0.011 7.487 -15.939 0.316 24 B_C70:G45_B B 70 ? B 45 ? 19 1 1 B C 51 1_555 B G 24 1_555 0.188 -0.376 0.078 2.700 -13.481 -1.927 25 B_C71:G44_B B 71 ? B 44 ? 19 1 1 B U 52 1_555 B A 23 1_555 -0.013 -0.255 0.048 8.569 -12.797 4.593 26 B_U72:A43_B B 72 ? B 43 ? 20 1 1 B G 53 1_555 B C 22 1_555 -0.256 -0.227 0.120 2.269 -10.456 -1.800 27 B_G73:C42_B B 73 ? B 42 ? 19 1 1 B C 54 1_555 B G 70 1_555 0.154 -0.175 0.124 2.186 -13.588 -2.520 28 B_C74:G90_B B 74 ? B 90 ? 19 1 1 B G 55 1_555 B C 69 1_555 -0.101 -0.191 0.298 -5.747 -24.641 -0.076 29 B_G75:C89_B B 75 ? B 89 ? 19 1 1 B G 56 1_555 B C 68 1_555 -0.070 -0.136 0.430 -1.247 -9.104 -1.338 30 B_G76:C88_B B 76 ? B 88 ? 19 1 1 B U 57 1_555 B A 67 1_555 -0.326 -0.194 0.261 -4.601 -14.563 -2.060 31 B_U77:A87_B B 77 ? B 87 ? 20 1 1 B C 58 1_555 B G 66 1_555 0.508 -0.256 0.183 4.673 -9.837 -0.299 32 B_C78:G86_B B 78 ? B 86 ? 19 1 1 B G 119 1_555 B C 65 1_555 -0.338 -0.105 -0.070 -6.192 -11.996 4.765 33 B_G139:C85_B B 139 ? B 85 ? 19 1 1 B C 120 1_555 B G 64 1_555 0.274 -0.221 0.019 -2.702 -13.374 2.089 34 B_C140:G84_B B 140 ? B 84 ? 19 1 1 B A 121 1_555 B U 63 1_555 0.366 -0.212 0.062 -1.880 -13.575 0.644 35 B_A141:U83_B B 141 ? B 83 ? 20 1 1 B G 122 1_555 B C 62 1_555 -0.660 -0.355 0.113 0.207 -12.800 2.986 36 B_G142:C82_B B 142 ? B 82 ? 19 1 1 B G 123 1_555 B C 61 1_555 -0.196 -0.233 0.255 -4.115 -16.509 1.130 37 B_G143:C81_B B 143 ? B 81 ? 19 1 1 B A 124 1_555 B U 60 1_555 -0.081 -0.206 -0.068 -9.205 -18.358 -7.739 38 B_A144:U80_B B 144 ? B 80 ? 20 1 1 B A 75 1_555 B G 117 1_555 -6.621 -4.010 0.156 2.554 -12.560 -0.704 39 B_A95:G137_B B 95 ? B 137 ? 11 9 1 B G 76 1_555 B C 116 1_555 -0.543 -0.131 0.213 0.047 -12.332 6.548 40 B_G96:C136_B B 96 ? B 136 ? 19 1 1 B G 77 1_555 B C 115 1_555 -0.391 -0.319 -0.224 -5.124 -8.841 1.600 41 B_G97:C135_B B 97 ? B 135 ? 19 1 1 B A 78 1_555 B U 114 1_555 -0.069 -0.237 0.215 1.002 -8.278 -1.446 42 B_A98:U134_B B 98 ? B 134 ? 20 1 1 B C 79 1_555 B G 113 1_555 0.209 -0.231 0.211 2.600 -15.658 1.877 43 B_C99:G133_B B 99 ? B 133 ? 19 1 1 B U 80 1_555 B A 112 1_555 0.064 -0.162 0.322 -2.284 -14.091 7.166 44 B_U100:A132_B B 100 ? B 132 ? 20 1 1 B G 81 1_555 B C 111 1_555 0.121 -0.035 0.252 -10.324 -18.838 2.285 45 B_G101:C131_B B 101 ? B 131 ? 19 1 1 B G 82 1_555 B A 109 1_555 8.251 -4.805 0.133 -2.764 -6.151 -56.277 46 B_G102:A129_B B 102 ? B 129 ? ? ? 1 B A 85 1_555 B U 106 1_555 -4.245 -2.028 0.133 3.933 1.467 -91.686 47 B_A105:U126_B B 105 ? B 126 ? 24 4 1 B A 86 1_555 B A 105 1_555 -4.444 1.058 0.069 15.166 -10.675 -108.813 48 B_A106:A125_B B 106 ? B 125 ? 5 4 1 B A 87 1_555 B C 104 1_555 -5.333 -2.404 -0.265 18.303 -33.884 -50.896 49 B_A107:C124_B B 107 ? B 124 ? ? ? 1 B C 88 1_555 B G 103 1_555 0.227 -0.141 -0.245 11.261 -19.239 2.738 50 B_C108:G123_B B 108 ? B 123 ? 19 1 1 B C 89 1_555 B G 102 1_555 0.261 -0.264 0.122 5.676 -9.420 -1.671 51 B_C109:G122_B B 109 ? B 122 ? 19 1 1 B A 90 1_555 B U 101 1_555 0.091 -0.140 -0.096 0.208 -14.483 0.428 52 B_A110:U121_B B 110 ? B 121 ? 20 1 1 B C 91 1_555 B G 100 1_555 0.369 -0.272 0.025 3.700 -15.557 0.027 53 B_C111:G120_B B 111 ? B 120 ? 19 1 1 B A 92 1_555 B U 99 1_555 0.154 -0.190 0.159 -0.919 -10.564 6.842 54 B_A112:U119_B B 112 ? B 119 ? 20 1 1 B G 93 1_555 B C 98 1_555 -0.379 -0.284 -0.187 -2.818 0.288 0.847 55 B_G113:C118_B B 113 ? B 118 ? 19 1 1 B G 94 1_555 B A 97 1_555 7.615 -5.464 0.956 0.053 -21.405 -47.319 56 B_G114:A117_B B 114 ? B 117 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 2 1_555 B G 44 1_555 A G 3 1_555 B C 43 1_555 -1.034 -2.173 3.337 -2.529 6.705 30.123 -5.321 1.468 2.873 12.677 4.782 30.945 1 AA_C2G3:C63G64_BB A 2 ? B 64 ? A 3 ? B 63 ? 1 A G 3 1_555 B C 43 1_555 A C 4 1_555 B G 42 1_555 0.019 -1.604 3.403 -1.589 3.633 35.502 -3.149 -0.263 3.224 5.935 2.595 35.716 2 AA_G3C4:G62C63_BB A 3 ? B 63 ? A 4 ? B 62 ? 1 A C 4 1_555 B G 42 1_555 A C 5 1_555 B G 41 1_555 -0.112 -1.834 3.174 2.996 6.459 30.686 -4.481 0.717 2.718 12.002 -5.567 31.482 3 AA_C4C5:G61G62_BB A 4 ? B 62 ? A 5 ? B 61 ? 1 A C 5 1_555 B G 41 1_555 A G 7 1_555 B C 40 1_555 -2.703 -1.604 3.427 3.191 5.636 50.199 -2.275 3.388 3.076 6.611 -3.743 50.588 4 AA_C5G7:C60G61_BB A 5 ? B 61 ? A 7 ? B 60 ? 1 A G 7 1_555 B C 40 1_555 A G 8 1_555 B U 13 1_555 3.424 -1.203 2.830 -14.602 -0.455 63.723 -1.102 -3.640 2.094 -0.425 13.642 65.204 5 AA_G7G8:U33C60_BB A 7 ? B 60 ? A 8 ? B 33 ? 1 A G 8 1_555 B U 13 1_555 A A 9 1_555 B U 12 1_555 0.471 -1.550 3.316 -4.367 7.463 43.919 -2.697 -1.006 2.970 9.864 5.772 44.721 6 AA_G8A9:U32U33_BB A 8 ? B 33 ? A 9 ? B 32 ? 1 A A 9 1_555 B U 12 1_555 A C 10 1_555 B G 11 1_555 0.631 -1.922 3.445 2.121 4.148 35.458 -3.744 -0.713 3.238 6.774 -3.464 35.753 7 AA_A9C10:G31U32_BB A 9 ? B 32 ? A 10 ? B 31 ? 1 A C 10 1_555 B G 11 1_555 A U 11 1_555 B A 10 1_555 -0.870 -2.334 3.435 -2.641 9.548 25.322 -7.224 1.229 2.483 20.793 5.752 27.162 8 AA_C10U11:A30G31_BB A 10 ? B 31 ? A 11 ? B 30 ? 1 A U 11 1_555 B A 10 1_555 A U 12 1_555 B A 9 1_555 -0.336 -0.970 3.084 -1.818 3.735 34.331 -2.168 0.304 2.978 6.299 3.066 34.574 9 AA_U11U12:A29A30_BB A 11 ? B 30 ? A 12 ? B 29 ? 1 A U 12 1_555 B A 9 1_555 A A 13 1_555 B U 8 1_555 0.212 -0.949 3.334 2.820 12.683 33.805 -3.272 0.046 2.817 20.879 -4.643 36.148 10 AA_U12A13:U28A29_BB A 12 ? B 29 ? A 13 ? B 28 ? 1 A A 13 1_555 B U 8 1_555 A A 14 1_555 B U 7 1_555 -0.314 -0.818 2.877 -1.409 6.513 29.126 -2.745 0.358 2.648 12.741 2.756 29.862 11 AA_A13A14:U27U28_BB A 13 ? B 28 ? A 14 ? B 27 ? 1 A A 14 1_555 B U 7 1_555 A A 15 1_555 B U 6 1_555 0.360 -1.162 3.269 -0.123 9.362 34.983 -3.130 -0.596 2.872 15.239 0.200 36.177 12 AA_A14A15:U26U27_BB A 14 ? B 27 ? A 15 ? B 26 ? 1 A A 15 1_555 B U 6 1_555 A G 16 1_555 B C 5 1_555 0.460 -1.758 3.138 2.404 7.210 28.458 -4.849 -0.442 2.651 14.345 -4.784 29.436 13 AA_A15G16:C25U26_BB A 15 ? B 26 ? A 16 ? B 25 ? 1 A G 16 1_555 B C 5 1_555 A C 17 1_555 B G 4 1_555 0.148 -1.369 3.275 5.061 1.785 35.896 -2.446 0.466 3.196 2.876 -8.156 36.282 14 AA_G16C17:G24C25_BB A 16 ? B 25 ? A 17 ? B 24 ? 1 A C 17 1_555 B G 4 1_555 A C 18 1_555 B G 3 1_555 0.131 -1.932 3.330 -0.811 5.959 32.517 -4.370 -0.363 2.935 10.529 1.433 33.053 15 AA_C17C18:G23G24_BB A 17 ? B 24 ? A 18 ? B 23 ? 1 B U 31 1_555 B A 18 1_555 B C 32 1_555 B G 17 1_555 0.104 -1.985 3.334 2.617 -0.539 34.529 -3.249 0.238 3.362 -0.906 -4.401 34.629 16 BB_U51C52:G37A38_BB B 51 ? B 38 ? B 52 ? B 37 ? 1 B C 32 1_555 B G 17 1_555 B G 33 1_555 B C 16 1_555 0.002 -1.153 2.964 -1.882 2.156 17.975 -4.720 -0.944 2.792 6.843 5.974 18.200 17 BB_C52G53:C36G37_BB B 52 ? B 37 ? B 53 ? B 36 ? 1 B G 33 1_555 B C 16 1_555 B A 34 1_555 B U 39 1_555 1.270 -2.490 3.377 0.491 -0.636 -48.825 3.061 1.574 3.334 0.769 0.594 -48.831 18 BB_G53A54:U59C36_BB B 53 ? B 36 ? B 54 ? B 59 ? 1 B A 30 1_555 B U 28 1_555 B G 48 1_555 B U 27 1_555 1.092 -2.638 -2.626 160.773 -39.614 48.615 -1.496 -1.234 0.451 -20.819 -84.492 166.865 19 BB_A50G68:U47U48_BB B 50 ? B 48 ? B 68 ? B 47 ? 1 B G 48 1_555 B U 27 1_555 B C 49 1_555 B G 26 1_555 0.108 -1.100 3.230 -0.424 5.002 45.508 -1.837 -0.175 3.098 6.442 0.546 45.769 20 BB_G68C69:G46U47_BB B 68 ? B 47 ? B 69 ? B 46 ? 1 B C 49 1_555 B G 26 1_555 B C 50 1_555 B G 25 1_555 -0.542 -1.500 3.471 -4.461 11.244 32.986 -4.176 0.229 2.870 19.024 7.548 35.076 21 BB_C69C70:G45G46_BB B 69 ? B 46 ? B 70 ? B 45 ? 1 B C 50 1_555 B G 25 1_555 B C 51 1_555 B G 24 1_555 -0.351 -1.439 3.326 -1.728 10.369 33.305 -3.906 0.335 2.782 17.556 2.925 34.880 22 BB_C70C71:G44G45_BB B 70 ? B 45 ? B 71 ? B 44 ? 1 B C 51 1_555 B G 24 1_555 B U 52 1_555 B A 23 1_555 0.565 -1.342 2.995 0.653 8.229 29.813 -3.895 -0.952 2.554 15.621 -1.240 30.910 23 BB_C71U72:A43G44_BB B 71 ? B 44 ? B 72 ? B 43 ? 1 B U 52 1_555 B A 23 1_555 B G 53 1_555 B C 22 1_555 -0.239 -1.598 3.189 -2.104 11.694 35.371 -3.903 0.122 2.561 18.609 3.348 37.253 24 BB_U72G73:C42A43_BB B 72 ? B 43 ? B 73 ? B 42 ? 1 B G 53 1_555 B C 22 1_555 B C 54 1_555 B G 70 1_555 0.766 -1.146 3.133 1.292 7.513 40.295 -2.401 -0.963 2.905 10.788 -1.855 40.981 25 BB_G73C74:G90C42_BB B 73 ? B 42 ? B 74 ? B 90 ? 1 B C 54 1_555 B G 70 1_555 B G 55 1_555 B C 69 1_555 0.534 -1.731 3.079 -0.462 17.722 34.125 -4.456 -0.861 1.969 27.981 0.729 38.334 26 BB_C74G75:C89G90_BB B 74 ? B 90 ? B 75 ? B 89 ? 1 B G 55 1_555 B C 69 1_555 B G 56 1_555 B C 68 1_555 -0.813 -1.838 2.927 -4.646 6.185 29.767 -4.508 0.752 2.596 11.792 8.857 30.733 27 BB_G75G76:C88C89_BB B 75 ? B 89 ? B 76 ? B 88 ? 1 B G 56 1_555 B C 68 1_555 B U 57 1_555 B A 67 1_555 -0.351 -1.473 3.353 -0.944 9.835 30.232 -4.420 0.476 2.759 18.253 1.751 31.770 28 BB_G76U77:A87C88_BB B 76 ? B 88 ? B 77 ? B 87 ? 1 B U 57 1_555 B A 67 1_555 B C 58 1_555 B G 66 1_555 0.396 -1.400 2.969 -1.208 4.289 36.593 -2.727 -0.771 2.779 6.800 1.915 36.855 29 BB_U77C78:G86A87_BB B 77 ? B 87 ? B 78 ? B 86 ? 1 B C 58 1_555 B G 66 1_555 B G 119 1_555 B C 65 1_555 -0.866 -1.750 3.202 0.380 12.366 35.231 -4.200 1.399 2.462 19.696 -0.605 37.275 30 BB_C78G139:C85G86_BB B 78 ? B 86 ? B 139 ? B 85 ? 1 B G 119 1_555 B C 65 1_555 B C 120 1_555 B G 64 1_555 -0.347 -1.254 3.184 0.463 5.029 33.725 -2.895 0.662 2.966 8.607 -0.793 34.090 31 BB_G139C140:G84C85_BB B 139 ? B 85 ? B 140 ? B 84 ? 1 B C 120 1_555 B G 64 1_555 B A 121 1_555 B U 63 1_555 0.356 -1.368 3.040 3.042 13.490 32.581 -3.964 -0.201 2.332 22.806 -5.142 35.321 32 BB_C140A141:U83G84_BB B 140 ? B 84 ? B 141 ? B 83 ? 1 B A 121 1_555 B U 63 1_555 B G 122 1_555 B C 62 1_555 0.662 -1.464 3.093 2.004 10.435 25.822 -5.203 -0.958 2.376 22.191 -4.261 27.888 33 BB_A141G142:C82U83_BB B 141 ? B 83 ? B 142 ? B 82 ? 1 B G 122 1_555 B C 62 1_555 B G 123 1_555 B C 61 1_555 0.624 -1.703 3.194 0.887 7.788 33.045 -4.068 -0.937 2.749 13.457 -1.533 33.936 34 BB_G142G143:C81C82_BB B 142 ? B 82 ? B 143 ? B 81 ? 1 B G 123 1_555 B C 61 1_555 B A 124 1_555 B U 60 1_555 -0.120 -1.769 3.208 4.742 5.700 35.403 -3.605 0.820 2.859 9.248 -7.694 36.147 35 BB_G143A144:U80C81_BB B 143 ? B 81 ? B 144 ? B 80 ? 1 B A 75 1_555 B G 117 1_555 B G 76 1_555 B C 116 1_555 0.443 -0.705 3.504 -6.457 8.223 60.644 -1.097 -0.754 3.335 8.078 6.343 61.454 36 BB_A95G96:C136G137_BB B 95 ? B 137 ? B 96 ? B 136 ? 1 B G 76 1_555 B C 116 1_555 B G 77 1_555 B C 115 1_555 -0.086 -2.092 3.301 2.314 8.147 30.473 -5.242 0.555 2.653 15.136 -4.300 31.601 37 BB_G96G97:C135C136_BB B 96 ? B 136 ? B 97 ? B 135 ? 1 B G 77 1_555 B C 115 1_555 B A 78 1_555 B U 114 1_555 -0.366 -1.446 3.041 -2.157 6.503 32.562 -3.495 0.319 2.727 11.441 3.795 33.256 38 BB_G97A98:U134C135_BB B 97 ? B 135 ? B 98 ? B 134 ? 1 B A 78 1_555 B U 114 1_555 B C 79 1_555 B G 113 1_555 0.331 -1.256 3.233 1.641 5.063 31.932 -3.114 -0.315 3.016 9.124 -2.956 32.361 39 BB_A98C99:G133U134_BB B 98 ? B 134 ? B 99 ? B 133 ? 1 B C 79 1_555 B G 113 1_555 B U 80 1_555 B A 112 1_555 0.342 -1.507 3.249 0.441 7.945 33.086 -3.772 -0.518 2.826 13.706 -0.761 34.003 40 BB_C99U100:A132G133_BB B 99 ? B 133 ? B 100 ? B 132 ? 1 B U 80 1_555 B A 112 1_555 B G 81 1_555 B C 111 1_555 0.509 -1.955 3.278 4.597 6.661 30.780 -4.729 -0.127 2.847 12.285 -8.478 31.802 41 BB_U100G101:C131A132_BB B 100 ? B 132 ? B 101 ? B 131 ? 1 B G 81 1_555 B C 111 1_555 B G 82 1_555 B A 109 1_555 -1.638 -1.148 3.218 3.248 0.944 90.203 -0.828 1.219 3.161 0.666 -2.292 90.253 42 BB_G101G102:A129C131_BB B 101 ? B 131 ? B 102 ? B 129 ? 1 B A 85 1_555 B U 106 1_555 B A 86 1_555 B A 105 1_555 -0.456 -1.650 3.169 1.718 -6.589 33.571 -1.750 1.049 3.396 -11.265 -2.936 34.235 43 BB_A105A106:A125U126_BB B 105 ? B 126 ? B 106 ? B 125 ? 1 B A 86 1_555 B A 105 1_555 B A 87 1_555 B C 104 1_555 3.835 -2.028 3.064 -4.564 14.289 38.062 -4.116 -5.885 1.770 20.944 6.689 40.809 44 BB_A106A107:C124A125_BB B 106 ? B 125 ? B 107 ? B 124 ? 1 B A 87 1_555 B C 104 1_555 B C 88 1_555 B G 103 1_555 2.673 -1.931 3.583 2.004 18.972 66.333 -2.442 -2.291 3.070 16.981 -1.794 68.719 45 BB_A107C108:G123C124_BB B 107 ? B 124 ? B 108 ? B 123 ? 1 B C 88 1_555 B G 103 1_555 B C 89 1_555 B G 102 1_555 -0.386 -1.280 3.403 -4.649 7.835 33.074 -3.411 -0.080 3.054 13.449 7.980 34.272 46 BB_C108C109:G122G123_BB B 108 ? B 123 ? B 109 ? B 122 ? 1 B C 89 1_555 B G 102 1_555 B A 90 1_555 B U 101 1_555 0.089 -1.434 3.252 3.091 8.969 33.886 -3.636 0.287 2.791 15.027 -5.179 35.151 47 BB_C109A110:U121G122_BB B 109 ? B 122 ? B 110 ? B 121 ? 1 B A 90 1_555 B U 101 1_555 B C 91 1_555 B G 100 1_555 0.033 -1.053 3.157 -0.862 4.337 33.101 -2.512 -0.192 2.997 7.570 1.504 33.387 48 BB_A110C111:G120U121_BB B 110 ? B 121 ? B 111 ? B 120 ? 1 B C 91 1_555 B G 100 1_555 B A 92 1_555 B U 99 1_555 0.733 -1.659 3.196 -0.161 12.360 33.234 -4.349 -1.226 2.440 20.739 0.270 35.398 49 BB_C111A112:U119G120_BB B 111 ? B 120 ? B 112 ? B 119 ? 1 B A 92 1_555 B U 99 1_555 B G 93 1_555 B C 98 1_555 0.106 -2.185 3.294 3.010 10.091 25.854 -6.673 0.418 2.292 21.455 -6.401 27.882 50 BB_A112G113:C118U119_BB B 112 ? B 119 ? B 113 ? B 118 ? 1 B G 93 1_555 B C 98 1_555 B G 94 1_555 B A 97 1_555 -4.497 -1.523 3.266 0.486 18.422 54.771 -2.507 4.695 2.635 19.419 -0.513 57.560 51 BB_G113G114:A117C118_BB B 113 ? B 118 ? B 114 ? B 117 ? # _atom_sites.entry_id 2GCV _atom_sites.fract_transf_matrix[1][1] 0.005539 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024716 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014069 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_