HEADER HYDROLASE 15-MAR-06 2GD4 TITLE CRYSTAL STRUCTURE OF THE ANTITHROMBIN-S195A FACTOR XA-PENTASACCHARIDE TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR X, STUART FACTOR, STUART-PROWER FACTOR, COMPND 3 CONTAINS: FACTOR X LIGHT CHAIN; FACTOR X HEAVY CHAIN; ACTIVATED COMPND 4 FACTOR XA HEAVY CHAIN; COMPND 5 CHAIN: L, A; COMPND 6 FRAGMENT: RESIDUES 126-182; COMPND 7 EC: 3.4.21.6; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: COAGULATION FACTOR, STUART FACTOR, STUART-PROWER FACTOR, COMPND 11 CONTAINS: FACTOR X LIGHT CHAIN; FACTOR X HEAVY CHAIN; ACTIVATED COMPND 12 FACTOR XA HEAVY CHAIN; COMPND 13 CHAIN: H, B; COMPND 14 FRAGMENT: RESIDUES 235-475; COMPND 15 EC: 3.4.21.6; COMPND 16 ENGINEERED: YES; COMPND 17 MUTATION: YES; COMPND 18 MOL_ID: 3; COMPND 19 MOLECULE: ANTITHROMBIN-III; COMPND 20 CHAIN: I, C; COMPND 21 FRAGMENT: RESIDUES 22-464; COMPND 22 SYNONYM: ATIII; COMPND 23 ENGINEERED: YES; COMPND 24 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: F10; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: SERPINC1, AT3 KEYWDS SERPIN, MICHAELIS COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.J.JOHNSON,W.LI,T.E.ADAMS,J.A.HUNTINGTON REVDAT 9 13-MAR-24 2GD4 1 COMPND SOURCE REVDAT 8 30-AUG-23 2GD4 1 REMARK REVDAT 7 20-OCT-21 2GD4 1 REMARK SEQADV HETSYN REVDAT 6 29-JUL-20 2GD4 1 COMPND SOURCE REMARK SEQADV REVDAT 6 2 1 HET HETNAM HETSYN FORMUL REVDAT 6 3 1 LINK SITE ATOM REVDAT 5 12-JUL-17 2GD4 1 REMARK HETSYN REVDAT 4 13-JUL-11 2GD4 1 VERSN REVDAT 3 24-FEB-09 2GD4 1 VERSN REVDAT 2 16-MAY-06 2GD4 1 JRNL REVDAT 1 09-MAY-06 2GD4 0 JRNL AUTH D.J.JOHNSON,W.LI,T.E.ADAMS,J.A.HUNTINGTON JRNL TITL ANTITHROMBIN-S195A FACTOR XA-HEPARIN STRUCTURE REVEALS THE JRNL TITL 2 ALLOSTERIC MECHANISM OF ANTITHROMBIN ACTIVATION. JRNL REF EMBO J. V. 25 2029 2006 JRNL REFN ISSN 0261-4189 JRNL PMID 16619025 JRNL DOI 10.1038/SJ.EMBOJ.7601089 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 27224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1114 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10763 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 339 REMARK 3 SOLVENT ATOMS : 63 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.65700 REMARK 3 B22 (A**2) : 5.28800 REMARK 3 B33 (A**2) : 6.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -10.38900 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM SIGMAA (A) : 0.68 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.53 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.75 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 45.13 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : PENTA_NEW.PAR REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : CNS_TOPPAR:CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR:PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : PENTA_NEW.TOP REMARK 3 TOPOLOGY FILE 3 : CNS_TOPPAR:WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CNS_TOPPAR:ION.TOP REMARK 3 TOPOLOGY FILE 5 : CNS_TOPPAR:CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GD4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000036972. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27231 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 36.923 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.17500 REMARK 200 R SYM (I) : 0.17500 REMARK 200 FOR THE DATA SET : 2.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.47600 REMARK 200 R SYM FOR SHELL (I) : 0.47600 REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1E03 AND 1F0S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 200MM CALCIUM ACETATE, REMARK 280 PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 110.13150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.29400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 110.13150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.29400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, I, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, E, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET L 85 REMARK 465 ARG L 140 REMARK 465 LYS L 141 REMARK 465 ARG L 142 REMARK 465 ARG H 245 REMARK 465 GLY H 246 REMARK 465 LEU H 247 REMARK 465 PRO H 248 REMARK 465 LYS H 249 REMARK 465 ALA H 250 REMARK 465 LYS H 251 REMARK 465 LEU I -10 REMARK 465 LEU I -9 REMARK 465 ILE I -8 REMARK 465 GLY I -7 REMARK 465 PHE I -6 REMARK 465 TRP I -5 REMARK 465 ASP I -4 REMARK 465 CYS I -3 REMARK 465 VAL I -2 REMARK 465 THR I -1 REMARK 465 CYS I 0 REMARK 465 HIS I 1 REMARK 465 GLY I 2 REMARK 465 SER I 3 REMARK 465 PRO I 4 REMARK 465 GLU I 27 REMARK 465 LYS I 28 REMARK 465 LYS I 29 REMARK 465 ALA I 30 REMARK 465 THR I 31 REMARK 465 GLU I 32 REMARK 465 ASP I 33 REMARK 465 GLU I 34 REMARK 465 GLY I 35 REMARK 465 SER I 36 REMARK 465 LYS I 432 REMARK 465 MET A 85 REMARK 465 ARG A 86 REMARK 465 ARG A 139 REMARK 465 ARG A 140 REMARK 465 LYS A 141 REMARK 465 ARG A 142 REMARK 465 ALA B 250 REMARK 465 LYS B 251 REMARK 465 LEU C -10 REMARK 465 LEU C -9 REMARK 465 ILE C -8 REMARK 465 GLY C -7 REMARK 465 PHE C -6 REMARK 465 TRP C -5 REMARK 465 ASP C -4 REMARK 465 CYS C -3 REMARK 465 VAL C -2 REMARK 465 THR C -1 REMARK 465 CYS C 0 REMARK 465 HIS C 1 REMARK 465 GLY C 2 REMARK 465 SER C 3 REMARK 465 GLU C 27 REMARK 465 LYS C 28 REMARK 465 LYS C 29 REMARK 465 ALA C 30 REMARK 465 THR C 31 REMARK 465 GLU C 32 REMARK 465 ASP C 33 REMARK 465 GLU C 34 REMARK 465 GLY C 35 REMARK 465 SER C 36 REMARK 465 LYS C 432 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS L 87 CG CD CE NZ REMARK 470 LEU L 88 CG CD1 CD2 REMARK 470 SER L 90 OG REMARK 470 LEU L 91 CG CD1 CD2 REMARK 470 ASP L 92 CG OD1 OD2 REMARK 470 GLU L 103 CG CD OE1 OE2 REMARK 470 GLN L 104 CG CD OE1 NE2 REMARK 470 ASN L 105 CG OD1 ND2 REMARK 470 LYS L 122 CD CE NZ REMARK 470 ILE L 125 CG1 CG2 CD1 REMARK 470 GLU L 138 CG CD OE1 OE2 REMARK 470 ARG L 139 CD NE CZ NH1 NH2 REMARK 470 ASP H 24 CG OD1 OD2 REMARK 470 LYS H 62 CE NZ REMARK 470 GLU H 74 CG CD OE1 OE2 REMARK 470 GLU H 76 CG CD OE1 OE2 REMARK 470 LYS H 90 CD CE NZ REMARK 470 ARG H 125 CG CD NE CZ NH1 NH2 REMARK 470 LYS H 148 CG CD CE NZ REMARK 470 LYS H 236 CG CD CE NZ REMARK 470 ARG H 240 CG CD NE CZ NH1 NH2 REMARK 470 LYS H 243 CG CD CE NZ REMARK 470 MET I 17 CG SD CE REMARK 470 MET I 20 CG SD CE REMARK 470 GLU I 37 CG CD OE1 OE2 REMARK 470 LYS I 39 CG CD CE NZ REMARK 470 GLU I 42 CG CD OE1 OE2 REMARK 470 LYS I 91 CE NZ REMARK 470 SER I 116 OG REMARK 470 LYS I 136 CD CE NZ REMARK 470 LYS I 139 CG CD CE NZ REMARK 470 LYS I 150 CD CE NZ REMARK 470 GLU I 156 CG CD OE1 OE2 REMARK 470 LYS I 169 CG CD CE NZ REMARK 470 ASP I 174 CG OD1 OD2 REMARK 470 LYS I 176 CG CD CE NZ REMARK 470 GLU I 177 CG CD OE1 OE2 REMARK 470 GLN I 181 CG CD OE1 NE2 REMARK 470 LYS I 188 CG CD CE NZ REMARK 470 GLU I 209 CG CD OE1 OE2 REMARK 470 LYS I 228 CG CD CE NZ REMARK 470 GLU I 232 CD OE1 OE2 REMARK 470 LYS I 241 CE NZ REMARK 470 LYS I 257 CD CE NZ REMARK 470 LYS I 275 CG CD CE NZ REMARK 470 LYS I 297 CG CD CE NZ REMARK 470 GLU I 310 CG CD OE1 OE2 REMARK 470 ARG I 322 CG CD NE CZ NH1 NH2 REMARK 470 ARG I 324 CD NE CZ NH1 NH2 REMARK 470 GLU I 333 CG CD OE1 OE2 REMARK 470 GLU I 357 CG CD OE1 OE2 REMARK 470 ARG I 359 CG CD NE CZ NH1 NH2 REMARK 470 ASP I 360 CG OD1 OD2 REMARK 470 GLU I 381 CG CD OE1 OE2 REMARK 470 THR I 386 OG1 CG2 REMARK 470 VAL I 388 CG1 CG2 REMARK 470 LYS I 403 CG CD CE NZ REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 LEU A 88 CG CD1 CD2 REMARK 470 SER A 90 OG REMARK 470 LEU A 91 CG CD1 CD2 REMARK 470 ASP A 92 CG OD1 OD2 REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 GLN A 104 CG CD OE1 NE2 REMARK 470 ASN A 105 CG OD1 ND2 REMARK 470 LYS A 122 CD CE NZ REMARK 470 ILE A 125 CG1 CG2 CD1 REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 ASP B 24 CG OD1 OD2 REMARK 470 LYS B 62 CE NZ REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 GLN B 75 CG CD OE1 NE2 REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 LYS B 90 CD CE NZ REMARK 470 ARG B 125 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 148 CG CD CE NZ REMARK 470 LYS B 236 CG CD CE NZ REMARK 470 ARG B 240 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 243 CG CD CE NZ REMARK 470 THR B 244 OG1 CG2 REMARK 470 LYS B 249 CG CD CE NZ REMARK 470 MET C 17 CG SD CE REMARK 470 ILE C 22 CG1 CG2 CD1 REMARK 470 GLU C 37 CG CD OE1 OE2 REMARK 470 LYS C 39 CG CD CE NZ REMARK 470 GLU C 42 CG CD OE1 OE2 REMARK 470 LYS C 91 CE NZ REMARK 470 SER C 116 OG REMARK 470 LYS C 136 CD CE NZ REMARK 470 LYS C 139 CG CD CE NZ REMARK 470 LYS C 150 CD CE NZ REMARK 470 GLU C 156 CG CD OE1 OE2 REMARK 470 LYS C 169 CG CD CE NZ REMARK 470 ASP C 174 CG OD1 OD2 REMARK 470 LYS C 176 CG CD CE NZ REMARK 470 GLU C 177 CG CD OE1 OE2 REMARK 470 GLN C 181 CG CD OE1 NE2 REMARK 470 LYS C 188 CG CD CE NZ REMARK 470 GLU C 209 CG CD OE1 OE2 REMARK 470 LYS C 228 CG CD CE NZ REMARK 470 GLU C 232 CD OE1 OE2 REMARK 470 LYS C 241 CE NZ REMARK 470 LYS C 257 CD CE NZ REMARK 470 LYS C 275 CG CD CE NZ REMARK 470 LYS C 297 CG CD CE NZ REMARK 470 GLU C 310 CG CD OE1 OE2 REMARK 470 ARG C 322 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 324 CD NE CZ NH1 NH2 REMARK 470 GLU C 333 CG CD OE1 OE2 REMARK 470 VAL C 355 CG1 CG2 REMARK 470 GLU C 357 CG CD OE1 OE2 REMARK 470 ARG C 359 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 360 CG OD1 OD2 REMARK 470 ASP C 361 CG OD1 OD2 REMARK 470 GLU C 381 CG CD OE1 OE2 REMARK 470 SER C 385 OG REMARK 470 THR C 386 OG1 CG2 REMARK 470 LYS C 403 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 PHE I 175 CG CD1 CD2 CE1 CE2 CZ REMARK 480 GLU I 205 CG CD OE1 OE2 REMARK 480 LYS I 332 CG CD CE NZ REMARK 480 ARG A 113 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 109 CD CE NZ REMARK 480 LYS C 70 CG CD CE NZ REMARK 480 ILE C 161 CG1 CG2 CD1 REMARK 480 LEU C 164 CG CD1 CD2 REMARK 480 LEU C 173 CG CD1 CD2 REMARK 480 LYS C 193 CG CD CE NZ REMARK 480 LEU C 210 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 168 CA - CB - SG ANGL. DEV. = 9.6 DEGREES REMARK 500 CYS B 168 CA - CB - SG ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS L 87 -116.11 94.33 REMARK 500 LEU L 88 -100.67 -86.07 REMARK 500 ASP L 92 46.53 33.64 REMARK 500 ASN L 93 59.77 36.59 REMARK 500 ASP L 95 24.97 41.83 REMARK 500 GLN L 98 -97.36 -143.67 REMARK 500 HIS L 101 -139.40 -139.97 REMARK 500 GLU L 102 59.16 176.08 REMARK 500 GLN L 104 50.94 72.12 REMARK 500 ASN L 105 26.04 44.52 REMARK 500 ALA L 123 140.41 -172.39 REMARK 500 PRO L 126 170.80 -38.97 REMARK 500 GLN H 20 -140.93 -155.69 REMARK 500 ASP H 24 122.80 -36.21 REMARK 500 CYS H 27 50.81 -148.58 REMARK 500 ASN H 38 99.11 68.30 REMARK 500 PHE H 41 7.47 -177.00 REMARK 500 CYS H 42 119.37 -170.77 REMARK 500 SER H 48 176.68 174.63 REMARK 500 GLU H 49 -15.73 -49.88 REMARK 500 TYR H 60 -81.25 -34.17 REMARK 500 LYS H 62 104.99 -166.89 REMARK 500 ARG H 63 113.64 67.98 REMARK 500 GLU H 77 59.39 -140.90 REMARK 500 ARG H 93 34.44 -98.58 REMARK 500 THR H 98 -12.18 -148.73 REMARK 500 TYR H 99 28.64 49.23 REMARK 500 PRO H 111 143.41 -33.87 REMARK 500 ASN H 117 -3.12 68.76 REMARK 500 PRO H 124A 178.92 -55.87 REMARK 500 ARG H 125 -90.59 -12.13 REMARK 500 ARG H 143 -131.94 -86.14 REMARK 500 THR H 144 32.39 -178.79 REMARK 500 HIS H 145 157.16 169.81 REMARK 500 ASP H 164 108.86 -58.11 REMARK 500 PHE H 181 153.21 177.82 REMARK 500 ASP H 189 -171.11 -178.69 REMARK 500 LYS H 204 -98.47 -119.80 REMARK 500 SER H 214 -91.63 -94.49 REMARK 500 TRP H 215 -158.98 -130.59 REMARK 500 ALA H 221 47.32 74.59 REMARK 500 LYS H 230 99.33 -67.93 REMARK 500 THR H 232 -9.33 -40.69 REMARK 500 PHE H 234 -1.05 -167.08 REMARK 500 ILE H 238 -82.05 -68.73 REMARK 500 MET H 242 17.44 -63.88 REMARK 500 THR I 9 49.53 -151.16 REMARK 500 PRO I 12 -166.58 -64.52 REMARK 500 MET I 17 -162.16 -112.26 REMARK 500 ASN I 18 79.71 31.24 REMARK 500 REMARK 500 THIS ENTRY HAS 235 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MAN D 5 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA H 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP H 70 OD1 REMARK 620 2 ASN H 72 O 80.0 REMARK 620 3 GLN H 75 O 171.0 92.6 REMARK 620 4 GLU H 77 OE1 117.9 155.6 67.8 REMARK 620 5 GLU H 80 OE1 93.7 147.3 95.2 53.3 REMARK 620 6 HOH H 402 O 92.6 67.8 89.3 123.6 80.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 70 OD1 REMARK 620 2 ASN B 72 O 71.6 REMARK 620 3 GLN B 75 O 154.7 83.5 REMARK 620 4 GLU B 80 OE1 109.7 163.8 95.5 REMARK 620 5 GLU B 80 OE2 72.1 111.5 123.3 55.8 REMARK 620 N 1 2 3 4 DBREF 2GD4 L 86 142 UNP P00742 FA10_HUMAN 126 182 DBREF 2GD4 A 86 142 UNP P00742 FA10_HUMAN 126 182 DBREF 2GD4 H 16 251 UNP P00742 FA10_HUMAN 235 475 DBREF 2GD4 B 16 251 UNP P00742 FA10_HUMAN 235 475 DBREF 2GD4 I -10 432 UNP P01008 ANT3_HUMAN 22 464 DBREF 2GD4 C -10 432 UNP P01008 ANT3_HUMAN 22 464 SEQADV 2GD4 MET L 85 UNP P00742 CLONING ARTIFACT SEQADV 2GD4 MET A 85 UNP P00742 CLONING ARTIFACT SEQADV 2GD4 ALA H 104 UNP P00742 SER 419 ENGINEERED MUTATION SEQADV 2GD4 ALA B 104 UNP P00742 SER 419 ENGINEERED MUTATION SEQADV 2GD4 ALA I 137 UNP P01008 SER 169 ENGINEERED MUTATION SEQADV 2GD4 ALA I 347 UNP P01008 GLU 379 ENGINEERED MUTATION SEQADV 2GD4 ALA I 348 UNP P01008 LYS 380 ENGINEERED MUTATION SEQADV 2GD4 ALA I 350 UNP P01008 LYS 382 ENGINEERED MUTATION SEQADV 2GD4 ALA C 137 UNP P01008 SER 169 ENGINEERED MUTATION SEQADV 2GD4 ALA C 347 UNP P01008 GLU 379 ENGINEERED MUTATION SEQADV 2GD4 ALA C 348 UNP P01008 LYS 380 ENGINEERED MUTATION SEQADV 2GD4 ALA C 350 UNP P01008 LYS 382 ENGINEERED MUTATION SEQRES 1 L 58 MET ARG LYS LEU CYS SER LEU ASP ASN GLY ASP CYS ASP SEQRES 2 L 58 GLN PHE CYS HIS GLU GLU GLN ASN SER VAL VAL CYS SER SEQRES 3 L 58 CYS ALA ARG GLY TYR THR LEU ALA ASP ASN GLY LYS ALA SEQRES 4 L 58 CYS ILE PRO THR GLY PRO TYR PRO CYS GLY LYS GLN THR SEQRES 5 L 58 LEU GLU ARG ARG LYS ARG SEQRES 1 H 241 ILE VAL GLY GLY GLN GLU CYS LYS ASP GLY GLU CYS PRO SEQRES 2 H 241 TRP GLN ALA LEU LEU ILE ASN GLU GLU ASN GLU GLY PHE SEQRES 3 H 241 CYS GLY GLY THR ILE LEU SER GLU PHE TYR ILE LEU THR SEQRES 4 H 241 ALA ALA HIS CYS LEU TYR GLN ALA LYS ARG PHE LYS VAL SEQRES 5 H 241 ARG VAL GLY ASP ARG ASN THR GLU GLN GLU GLU GLY GLY SEQRES 6 H 241 GLU ALA VAL HIS GLU VAL GLU VAL VAL ILE LYS HIS ASN SEQRES 7 H 241 ARG PHE THR LYS GLU THR TYR ASP PHE ASP ILE ALA VAL SEQRES 8 H 241 LEU ARG LEU LYS THR PRO ILE THR PHE ARG MET ASN VAL SEQRES 9 H 241 ALA PRO ALA CYS LEU PRO GLU ARG ASP TRP ALA GLU SER SEQRES 10 H 241 THR LEU MET THR GLN LYS THR GLY ILE VAL SER GLY PHE SEQRES 11 H 241 GLY ARG THR HIS GLU LYS GLY ARG GLN SER THR ARG LEU SEQRES 12 H 241 LYS MET LEU GLU VAL PRO TYR VAL ASP ARG ASN SER CYS SEQRES 13 H 241 LYS LEU SER SER SER PHE ILE ILE THR GLN ASN MET PHE SEQRES 14 H 241 CYS ALA GLY TYR ASP THR LYS GLN GLU ASP ALA CYS GLN SEQRES 15 H 241 GLY ASP ALA GLY GLY PRO HIS VAL THR ARG PHE LYS ASP SEQRES 16 H 241 THR TYR PHE VAL THR GLY ILE VAL SER TRP GLY GLU GLY SEQRES 17 H 241 CYS ALA ARG LYS GLY LYS TYR GLY ILE TYR THR LYS VAL SEQRES 18 H 241 THR ALA PHE LEU LYS TRP ILE ASP ARG SER MET LYS THR SEQRES 19 H 241 ARG GLY LEU PRO LYS ALA LYS SEQRES 1 I 443 LEU LEU ILE GLY PHE TRP ASP CYS VAL THR CYS HIS GLY SEQRES 2 I 443 SER PRO VAL ASP ILE CYS THR ALA LYS PRO ARG ASP ILE SEQRES 3 I 443 PRO MET ASN PRO MET CYS ILE TYR ARG SER PRO GLU LYS SEQRES 4 I 443 LYS ALA THR GLU ASP GLU GLY SER GLU GLN LYS ILE PRO SEQRES 5 I 443 GLU ALA THR ASN ARG ARG VAL TRP GLU LEU SER LYS ALA SEQRES 6 I 443 ASN SER ARG PHE ALA THR THR PHE TYR GLN HIS LEU ALA SEQRES 7 I 443 ASP SER LYS ASN ASP ASN ASP ASN ILE PHE LEU SER PRO SEQRES 8 I 443 LEU SER ILE SER THR ALA PHE ALA MET THR LYS LEU GLY SEQRES 9 I 443 ALA CYS ASN ASP THR LEU GLN GLN LEU MET GLU VAL PHE SEQRES 10 I 443 LYS PHE ASP THR ILE SER GLU LYS THR SER ASP GLN ILE SEQRES 11 I 443 HIS PHE PHE PHE ALA LYS LEU ASN CYS ARG LEU TYR ARG SEQRES 12 I 443 LYS ALA ASN LYS ALA SER LYS LEU VAL SER ALA ASN ARG SEQRES 13 I 443 LEU PHE GLY ASP LYS SER LEU THR PHE ASN GLU THR TYR SEQRES 14 I 443 GLN ASP ILE SER GLU LEU VAL TYR GLY ALA LYS LEU GLN SEQRES 15 I 443 PRO LEU ASP PHE LYS GLU ASN ALA GLU GLN SER ARG ALA SEQRES 16 I 443 ALA ILE ASN LYS TRP VAL SER ASN LYS THR GLU GLY ARG SEQRES 17 I 443 ILE THR ASP VAL ILE PRO SER GLU ALA ILE ASN GLU LEU SEQRES 18 I 443 THR VAL LEU VAL LEU VAL ASN THR ILE TYR PHE LYS GLY SEQRES 19 I 443 LEU TRP LYS SER LYS PHE SER PRO GLU ASN THR ARG LYS SEQRES 20 I 443 GLU LEU PHE TYR LYS ALA ASP GLY GLU SER CYS SER ALA SEQRES 21 I 443 SER MET MET TYR GLN GLU GLY LYS PHE ARG TYR ARG ARG SEQRES 22 I 443 VAL ALA GLU GLY THR GLN VAL LEU GLU LEU PRO PHE LYS SEQRES 23 I 443 GLY ASP ASP ILE THR MET VAL LEU ILE LEU PRO LYS PRO SEQRES 24 I 443 GLU LYS SER LEU ALA LYS VAL GLU LYS GLU LEU THR PRO SEQRES 25 I 443 GLU VAL LEU GLN GLU TRP LEU ASP GLU LEU GLU GLU MET SEQRES 26 I 443 MET LEU VAL VAL HIS MET PRO ARG PHE ARG ILE GLU ASP SEQRES 27 I 443 GLY PHE SER LEU LYS GLU GLN LEU GLN ASP MET GLY LEU SEQRES 28 I 443 VAL ASP LEU PHE SER PRO ALA ALA SER ALA LEU PRO GLY SEQRES 29 I 443 ILE VAL ALA GLU GLY ARG ASP ASP LEU TYR VAL SER ASP SEQRES 30 I 443 ALA PHE HIS LYS ALA PHE LEU GLU VAL ASN GLU GLU GLY SEQRES 31 I 443 SER GLU ALA ALA ALA SER THR ALA VAL VAL ILE ALA GLY SEQRES 32 I 443 ARG SER LEU ASN PRO ASN ARG VAL THR PHE LYS ALA ASN SEQRES 33 I 443 ARG PRO PHE LEU VAL PHE ILE ARG GLU VAL PRO LEU ASN SEQRES 34 I 443 THR ILE ILE PHE MET GLY ARG VAL ALA ASN PRO CYS VAL SEQRES 35 I 443 LYS SEQRES 1 A 58 MET ARG LYS LEU CYS SER LEU ASP ASN GLY ASP CYS ASP SEQRES 2 A 58 GLN PHE CYS HIS GLU GLU GLN ASN SER VAL VAL CYS SER SEQRES 3 A 58 CYS ALA ARG GLY TYR THR LEU ALA ASP ASN GLY LYS ALA SEQRES 4 A 58 CYS ILE PRO THR GLY PRO TYR PRO CYS GLY LYS GLN THR SEQRES 5 A 58 LEU GLU ARG ARG LYS ARG SEQRES 1 B 241 ILE VAL GLY GLY GLN GLU CYS LYS ASP GLY GLU CYS PRO SEQRES 2 B 241 TRP GLN ALA LEU LEU ILE ASN GLU GLU ASN GLU GLY PHE SEQRES 3 B 241 CYS GLY GLY THR ILE LEU SER GLU PHE TYR ILE LEU THR SEQRES 4 B 241 ALA ALA HIS CYS LEU TYR GLN ALA LYS ARG PHE LYS VAL SEQRES 5 B 241 ARG VAL GLY ASP ARG ASN THR GLU GLN GLU GLU GLY GLY SEQRES 6 B 241 GLU ALA VAL HIS GLU VAL GLU VAL VAL ILE LYS HIS ASN SEQRES 7 B 241 ARG PHE THR LYS GLU THR TYR ASP PHE ASP ILE ALA VAL SEQRES 8 B 241 LEU ARG LEU LYS THR PRO ILE THR PHE ARG MET ASN VAL SEQRES 9 B 241 ALA PRO ALA CYS LEU PRO GLU ARG ASP TRP ALA GLU SER SEQRES 10 B 241 THR LEU MET THR GLN LYS THR GLY ILE VAL SER GLY PHE SEQRES 11 B 241 GLY ARG THR HIS GLU LYS GLY ARG GLN SER THR ARG LEU SEQRES 12 B 241 LYS MET LEU GLU VAL PRO TYR VAL ASP ARG ASN SER CYS SEQRES 13 B 241 LYS LEU SER SER SER PHE ILE ILE THR GLN ASN MET PHE SEQRES 14 B 241 CYS ALA GLY TYR ASP THR LYS GLN GLU ASP ALA CYS GLN SEQRES 15 B 241 GLY ASP ALA GLY GLY PRO HIS VAL THR ARG PHE LYS ASP SEQRES 16 B 241 THR TYR PHE VAL THR GLY ILE VAL SER TRP GLY GLU GLY SEQRES 17 B 241 CYS ALA ARG LYS GLY LYS TYR GLY ILE TYR THR LYS VAL SEQRES 18 B 241 THR ALA PHE LEU LYS TRP ILE ASP ARG SER MET LYS THR SEQRES 19 B 241 ARG GLY LEU PRO LYS ALA LYS SEQRES 1 C 443 LEU LEU ILE GLY PHE TRP ASP CYS VAL THR CYS HIS GLY SEQRES 2 C 443 SER PRO VAL ASP ILE CYS THR ALA LYS PRO ARG ASP ILE SEQRES 3 C 443 PRO MET ASN PRO MET CYS ILE TYR ARG SER PRO GLU LYS SEQRES 4 C 443 LYS ALA THR GLU ASP GLU GLY SER GLU GLN LYS ILE PRO SEQRES 5 C 443 GLU ALA THR ASN ARG ARG VAL TRP GLU LEU SER LYS ALA SEQRES 6 C 443 ASN SER ARG PHE ALA THR THR PHE TYR GLN HIS LEU ALA SEQRES 7 C 443 ASP SER LYS ASN ASP ASN ASP ASN ILE PHE LEU SER PRO SEQRES 8 C 443 LEU SER ILE SER THR ALA PHE ALA MET THR LYS LEU GLY SEQRES 9 C 443 ALA CYS ASN ASP THR LEU GLN GLN LEU MET GLU VAL PHE SEQRES 10 C 443 LYS PHE ASP THR ILE SER GLU LYS THR SER ASP GLN ILE SEQRES 11 C 443 HIS PHE PHE PHE ALA LYS LEU ASN CYS ARG LEU TYR ARG SEQRES 12 C 443 LYS ALA ASN LYS ALA SER LYS LEU VAL SER ALA ASN ARG SEQRES 13 C 443 LEU PHE GLY ASP LYS SER LEU THR PHE ASN GLU THR TYR SEQRES 14 C 443 GLN ASP ILE SER GLU LEU VAL TYR GLY ALA LYS LEU GLN SEQRES 15 C 443 PRO LEU ASP PHE LYS GLU ASN ALA GLU GLN SER ARG ALA SEQRES 16 C 443 ALA ILE ASN LYS TRP VAL SER ASN LYS THR GLU GLY ARG SEQRES 17 C 443 ILE THR ASP VAL ILE PRO SER GLU ALA ILE ASN GLU LEU SEQRES 18 C 443 THR VAL LEU VAL LEU VAL ASN THR ILE TYR PHE LYS GLY SEQRES 19 C 443 LEU TRP LYS SER LYS PHE SER PRO GLU ASN THR ARG LYS SEQRES 20 C 443 GLU LEU PHE TYR LYS ALA ASP GLY GLU SER CYS SER ALA SEQRES 21 C 443 SER MET MET TYR GLN GLU GLY LYS PHE ARG TYR ARG ARG SEQRES 22 C 443 VAL ALA GLU GLY THR GLN VAL LEU GLU LEU PRO PHE LYS SEQRES 23 C 443 GLY ASP ASP ILE THR MET VAL LEU ILE LEU PRO LYS PRO SEQRES 24 C 443 GLU LYS SER LEU ALA LYS VAL GLU LYS GLU LEU THR PRO SEQRES 25 C 443 GLU VAL LEU GLN GLU TRP LEU ASP GLU LEU GLU GLU MET SEQRES 26 C 443 MET LEU VAL VAL HIS MET PRO ARG PHE ARG ILE GLU ASP SEQRES 27 C 443 GLY PHE SER LEU LYS GLU GLN LEU GLN ASP MET GLY LEU SEQRES 28 C 443 VAL ASP LEU PHE SER PRO ALA ALA SER ALA LEU PRO GLY SEQRES 29 C 443 ILE VAL ALA GLU GLY ARG ASP ASP LEU TYR VAL SER ASP SEQRES 30 C 443 ALA PHE HIS LYS ALA PHE LEU GLU VAL ASN GLU GLU GLY SEQRES 31 C 443 SER GLU ALA ALA ALA SER THR ALA VAL VAL ILE ALA GLY SEQRES 32 C 443 ARG SER LEU ASN PRO ASN ARG VAL THR PHE LYS ALA ASN SEQRES 33 C 443 ARG PRO PHE LEU VAL PHE ILE ARG GLU VAL PRO LEU ASN SEQRES 34 C 443 THR ILE ILE PHE MET GLY ARG VAL ALA ASN PRO CYS VAL SEQRES 35 C 443 LYS MODRES 2GD4 ASN I 96 ASN GLYCOSYLATION SITE MODRES 2GD4 ASN I 155 ASN GLYCOSYLATION SITE MODRES 2GD4 ASN I 192 ASN GLYCOSYLATION SITE MODRES 2GD4 ASN C 96 ASN GLYCOSYLATION SITE MODRES 2GD4 ASN C 155 ASN GLYCOSYLATION SITE MODRES 2GD4 ASN C 192 ASN GLYCOSYLATION SITE HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 10 HET MAN D 6 11 HET NAG E 1 14 HET NAG E 2 14 HET ZDO F 1 21 HET IDS F 2 16 HET SUS F 3 23 HET BDP F 4 12 HET SGN F 5 19 HET ZDO G 1 21 HET IDS G 2 16 HET SUS G 3 23 HET BDP G 4 12 HET SGN G 5 19 HET CA H 401 1 HET NAG I 501 14 HET NAG I 701 14 HET CA B 401 1 HET NAG C 501 14 HET NAG C 701 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM ZDO METHYL 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D- HETNAM 2 ZDO GLUCOPYRANOSIDE HETNAM IDS 2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID HETNAM SUS 2-DEOXY-3,6-DI-O-SULFO-2-(SULFOAMINO)-ALPHA-D- HETNAM 2 SUS GLUCOPYRANOSE HETNAM BDP BETA-D-GLUCOPYRANURONIC ACID HETNAM SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN IDS O2-SULFO-GLUCURONIC ACID; 2-O-SULFO-ALPHA-L-IDURONIC HETSYN 2 IDS ACID; 2-O-SULFO-L-IDURONIC ACID; 2-O-SULFO-IDURONIC HETSYN 3 IDS ACID HETSYN SUS 3,6-DI-O-SULFO-N-SULFO-ALPHA-D-GLUCOSAMINE; 2-DEOXY-3, HETSYN 2 SUS 6-DI-O-SULFO-2-(SULFOAMINO)-ALPHA-D-GLUCOSE; 2-DEOXY- HETSYN 3 SUS 3,6-DI-O-SULFO-2-(SULFOAMINO)-D-GLUCOSE; 2-DEOXY-3,6- HETSYN 4 SUS DI-O-SULFO-2-(SULFOAMINO)-GLUCOSE HETSYN BDP BETA-D-GLUCURONIC ACID; D-GLUCURONIC ACID; GLUCURONIC HETSYN 2 BDP ACID HETSYN SGN N,O6-DISULFO-GLUCOSAMINE; 6-O-SULFO-N-SULFO-ALPHA-D- HETSYN 2 SGN GLUCOSAMINE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D- HETSYN 3 SGN GLUCOSE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-D-GLUCOSE; HETSYN 4 SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-GLUCOSE FORMUL 7 NAG 8(C8 H15 N O6) FORMUL 7 BMA C6 H12 O6 FORMUL 7 MAN 3(C6 H12 O6) FORMUL 9 ZDO 2(C7 H15 N O11 S2) FORMUL 9 IDS 2(C6 H10 O10 S) FORMUL 9 SUS 2(C6 H13 N O14 S3) FORMUL 9 BDP 2(C6 H10 O7) FORMUL 9 SGN 2(C6 H13 N O11 S2) FORMUL 11 CA 2(CA 2+) FORMUL 17 HOH *63(H2 O) HELIX 1 1 LEU L 91 CYS L 96 5 6 HELIX 2 2 GLU H 124 LEU H 131A 1 9 HELIX 3 3 ASP H 164 SER H 172 1 9 HELIX 4 4 PHE H 234 MET H 242 1 9 HELIX 5 5 ASP I 6 ALA I 10 5 5 HELIX 6 6 ARG I 47 LYS I 70 1 24 HELIX 7 7 SER I 79 PHE I 87 1 9 HELIX 8 8 PHE I 87 LEU I 92 1 6 HELIX 9 9 CYS I 95 VAL I 105 1 11 HELIX 10 10 LYS I 114 SER I 138 1 25 HELIX 11 11 ASN I 155 GLY I 167 1 13 HELIX 12 12 ASN I 178 ASN I 192 1 15 HELIX 13 13 SER I 230 THR I 234 5 5 HELIX 14 14 SER I 291 GLU I 298 1 8 HELIX 15 15 THR I 300 GLU I 310 1 11 HELIX 16 16 LEU I 331 MET I 338 1 8 HELIX 17 17 VAL I 341 SER I 349 5 9 HELIX 18 18 LEU A 91 CYS A 96 5 6 HELIX 19 19 GLU B 124 LEU B 131A 1 9 HELIX 20 20 ASP B 164 SER B 172 1 9 HELIX 21 21 PHE B 234 MET B 242 1 9 HELIX 22 22 ASP C 6 ALA C 10 5 5 HELIX 23 23 ARG C 47 LYS C 70 1 24 HELIX 24 24 SER C 79 PHE C 87 1 9 HELIX 25 25 PHE C 87 LEU C 92 1 6 HELIX 26 26 CYS C 95 VAL C 105 1 11 HELIX 27 27 LYS C 114 SER C 138 1 25 HELIX 28 28 ASN C 155 GLY C 167 1 13 HELIX 29 29 ASN C 178 ASN C 192 1 15 HELIX 30 30 SER C 230 THR C 234 5 5 HELIX 31 31 SER C 291 GLU C 298 1 8 HELIX 32 32 THR C 300 GLU C 310 1 11 HELIX 33 33 LEU C 331 MET C 338 1 8 HELIX 34 34 VAL C 341 SER C 349 5 9 SHEET 1 A 2 PHE L 99 CYS L 100 0 SHEET 2 A 2 CYS L 109 SER L 110 -1 O SER L 110 N PHE L 99 SHEET 1 B 2 TYR L 115 LEU L 117 0 SHEET 2 B 2 CYS L 124 PRO L 126 -1 O ILE L 125 N THR L 116 SHEET 1 C 4 GLY H 40 THR H 45 0 SHEET 2 C 4 GLN H 30 ASN H 35 -1 N LEU H 33 O CYS H 42 SHEET 3 C 4 PHE H 64 VAL H 68 -1 O ARG H 67 N LEU H 32 SHEET 4 C 4 ALA H 81 HIS H 83 -1 O HIS H 83 N VAL H 66 SHEET 1 D 3 TYR H 51 THR H 54 0 SHEET 2 D 3 ALA H 104 LEU H 108 -1 O LEU H 106 N ILE H 52 SHEET 3 D 3 VAL H 85 LYS H 90 -1 N VAL H 87 O ARG H 107 SHEET 1 E 7 THR H 135 GLY H 140 0 SHEET 2 E 7 LYS H 156 VAL H 163 -1 O LEU H 158 N VAL H 138 SHEET 3 E 7 CYS H 182 ALA H 183 -1 O CYS H 182 N VAL H 163 SHEET 4 E 7 GLY H 226 LYS H 230 -1 O GLY H 226 N ALA H 183 SHEET 5 E 7 TYR H 207 VAL H 213 -1 N ILE H 212 O THR H 229 SHEET 6 E 7 PRO H 198 ARG H 202 -1 N HIS H 199 O THR H 210 SHEET 7 E 7 THR H 135 GLY H 140 -1 N ILE H 137 O VAL H 200 SHEET 1 F 7 ILE I 76 LEU I 78 0 SHEET 2 F 7 ILE I 420 VAL I 426 -1 O ARG I 425 N ILE I 76 SHEET 3 F 7 PHE I 408 GLU I 414 -1 N VAL I 410 O GLY I 424 SHEET 4 F 7 ILE I 279 LEU I 285 -1 N ILE I 284 O LEU I 409 SHEET 5 F 7 GLN I 268 PRO I 273 -1 N GLN I 268 O LEU I 285 SHEET 6 F 7 SER I 248 ARG I 262 -1 N ARG I 261 O VAL I 269 SHEET 7 F 7 ARG I 235 LEU I 238 -1 N GLU I 237 O ALA I 249 SHEET 1 G 8 ILE I 76 LEU I 78 0 SHEET 2 G 8 ILE I 420 VAL I 426 -1 O ARG I 425 N ILE I 76 SHEET 3 G 8 PHE I 408 GLU I 414 -1 N VAL I 410 O GLY I 424 SHEET 4 G 8 ILE I 279 LEU I 285 -1 N ILE I 284 O LEU I 409 SHEET 5 G 8 GLN I 268 PRO I 273 -1 N GLN I 268 O LEU I 285 SHEET 6 G 8 SER I 248 ARG I 262 -1 N ARG I 261 O VAL I 269 SHEET 7 G 8 GLU I 312 PRO I 321 -1 O MET I 320 N MET I 252 SHEET 8 G 8 VAL I 400 LYS I 403 1 O PHE I 402 N VAL I 317 SHEET 1 H 4 LYS I 139 SER I 142 0 SHEET 2 H 4 LEU I 213 LYS I 222 -1 O TYR I 220 N VAL I 141 SHEET 3 H 4 ARG I 145 ASP I 149 -1 N ARG I 145 O VAL I 216 SHEET 4 H 4 GLN I 171 LEU I 173 1 O LEU I 173 N GLY I 148 SHEET 1 I 4 LYS I 139 SER I 142 0 SHEET 2 I 4 LEU I 213 LYS I 222 -1 O TYR I 220 N VAL I 141 SHEET 3 I 4 ASP I 366 VAL I 375 1 O PHE I 368 N LEU I 215 SHEET 4 I 4 PHE I 323 SER I 330 -1 N ASP I 327 O ALA I 371 SHEET 1 J 2 PHE A 99 CYS A 100 0 SHEET 2 J 2 CYS A 109 SER A 110 -1 O SER A 110 N PHE A 99 SHEET 1 K 2 TYR A 115 LEU A 117 0 SHEET 2 K 2 CYS A 124 PRO A 126 -1 O ILE A 125 N THR A 116 SHEET 1 L 4 GLY B 40 THR B 45 0 SHEET 2 L 4 GLN B 30 ASN B 35 -1 N LEU B 33 O CYS B 42 SHEET 3 L 4 PHE B 64 VAL B 68 -1 O ARG B 67 N LEU B 32 SHEET 4 L 4 ALA B 81 HIS B 83 -1 O HIS B 83 N VAL B 66 SHEET 1 M 3 TYR B 51 THR B 54 0 SHEET 2 M 3 ALA B 104 LEU B 108 -1 O LEU B 106 N ILE B 52 SHEET 3 M 3 VAL B 85 LYS B 90 -1 N VAL B 87 O ARG B 107 SHEET 1 N 7 THR B 135 GLY B 140 0 SHEET 2 N 7 LYS B 156 VAL B 163 -1 O LEU B 158 N VAL B 138 SHEET 3 N 7 CYS B 182 ALA B 183 -1 O CYS B 182 N VAL B 163 SHEET 4 N 7 GLY B 226 LYS B 230 -1 O GLY B 226 N ALA B 183 SHEET 5 N 7 TYR B 207 VAL B 213 -1 N ILE B 212 O THR B 229 SHEET 6 N 7 PRO B 198 ARG B 202 -1 N HIS B 199 O THR B 210 SHEET 7 N 7 THR B 135 GLY B 140 -1 N ILE B 137 O VAL B 200 SHEET 1 O 7 ILE C 76 LEU C 78 0 SHEET 2 O 7 ILE C 420 VAL C 426 -1 O ARG C 425 N ILE C 76 SHEET 3 O 7 PHE C 408 GLU C 414 -1 N VAL C 410 O GLY C 424 SHEET 4 O 7 ILE C 279 LEU C 285 -1 N ILE C 284 O LEU C 409 SHEET 5 O 7 GLN C 268 PRO C 273 -1 N GLN C 268 O LEU C 285 SHEET 6 O 7 SER C 248 ARG C 262 -1 N ARG C 261 O VAL C 269 SHEET 7 O 7 ARG C 235 LEU C 238 -1 N GLU C 237 O ALA C 249 SHEET 1 P 8 ILE C 76 LEU C 78 0 SHEET 2 P 8 ILE C 420 VAL C 426 -1 O ARG C 425 N ILE C 76 SHEET 3 P 8 PHE C 408 GLU C 414 -1 N VAL C 410 O GLY C 424 SHEET 4 P 8 ILE C 279 LEU C 285 -1 N ILE C 284 O LEU C 409 SHEET 5 P 8 GLN C 268 PRO C 273 -1 N GLN C 268 O LEU C 285 SHEET 6 P 8 SER C 248 ARG C 262 -1 N ARG C 261 O VAL C 269 SHEET 7 P 8 GLU C 312 PRO C 321 -1 O MET C 320 N MET C 252 SHEET 8 P 8 VAL C 400 LYS C 403 1 O PHE C 402 N VAL C 317 SHEET 1 Q 4 LYS C 139 SER C 142 0 SHEET 2 Q 4 LEU C 213 LYS C 222 -1 O TYR C 220 N VAL C 141 SHEET 3 Q 4 ARG C 145 ASP C 149 -1 N ARG C 145 O VAL C 216 SHEET 4 Q 4 GLN C 171 LEU C 173 1 O LEU C 173 N GLY C 148 SHEET 1 R 4 LYS C 139 SER C 142 0 SHEET 2 R 4 LEU C 213 LYS C 222 -1 O TYR C 220 N VAL C 141 SHEET 3 R 4 ASP C 366 VAL C 375 1 O PHE C 368 N LEU C 215 SHEET 4 R 4 PHE C 323 SER C 330 -1 N ASP C 327 O ALA C 371 SSBOND 1 CYS L 89 CYS L 100 1555 1555 2.03 SSBOND 2 CYS L 96 CYS L 109 1555 1555 2.03 SSBOND 3 CYS L 111 CYS L 124 1555 1555 2.03 SSBOND 4 CYS L 132 CYS H 122 1555 1555 2.03 SSBOND 5 CYS H 22 CYS H 27 1555 1555 2.05 SSBOND 6 CYS H 42 CYS H 58 1555 1555 2.03 SSBOND 7 CYS H 168 CYS H 182 1555 1555 2.03 SSBOND 8 CYS H 191 CYS H 220 1555 1555 2.04 SSBOND 9 CYS I 8 CYS I 128 1555 1555 2.03 SSBOND 10 CYS I 21 CYS I 95 1555 1555 2.04 SSBOND 11 CYS I 247 CYS I 430 1555 1555 2.03 SSBOND 12 CYS A 89 CYS A 100 1555 1555 2.03 SSBOND 13 CYS A 96 CYS A 109 1555 1555 2.03 SSBOND 14 CYS A 111 CYS A 124 1555 1555 2.03 SSBOND 15 CYS A 132 CYS B 122 1555 1555 2.03 SSBOND 16 CYS B 22 CYS B 27 1555 1555 2.04 SSBOND 17 CYS B 42 CYS B 58 1555 1555 2.03 SSBOND 18 CYS B 168 CYS B 182 1555 1555 2.03 SSBOND 19 CYS B 191 CYS B 220 1555 1555 2.04 SSBOND 20 CYS C 8 CYS C 128 1555 1555 2.03 SSBOND 21 CYS C 21 CYS C 95 1555 1555 2.04 SSBOND 22 CYS C 247 CYS C 430 1555 1555 2.03 LINK ND2 ASN I 96 C1 NAG I 501 1555 1555 1.46 LINK ND2 ASN I 155 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN I 192 C1 NAG I 701 1555 1555 1.45 LINK ND2 ASN C 96 C1 NAG C 501 1555 1555 1.46 LINK ND2 ASN C 155 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN C 192 C1 NAG C 701 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.38 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.40 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.40 LINK O6 BMA D 3 C1 MAN D 6 1555 1555 1.41 LINK O2 MAN D 4 C1 MAN D 5 1555 1555 1.40 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.37 LINK O4 ZDO F 1 C1 IDS F 2 1555 1555 1.44 LINK O4 IDS F 2 C1 SUS F 3 1555 1555 1.44 LINK O4 SUS F 3 C1 BDP F 4 1555 1555 1.44 LINK O4 BDP F 4 C1 SGN F 5 1555 1555 1.44 LINK O4 ZDO G 1 C1 IDS G 2 1555 1555 1.44 LINK O4 IDS G 2 C1 SUS G 3 1555 1555 1.44 LINK O4 SUS G 3 C1 BDP G 4 1555 1555 1.44 LINK O4 BDP G 4 C1 SGN G 5 1555 1555 1.43 LINK OD1 ASP H 70 CA CA H 401 1555 1555 2.27 LINK O ASN H 72 CA CA H 401 1555 1555 1.90 LINK O GLN H 75 CA CA H 401 1555 1555 2.78 LINK OE1 GLU H 77 CA CA H 401 1555 1555 2.91 LINK OE1 GLU H 80 CA CA H 401 1555 1555 2.11 LINK CA CA H 401 O HOH H 402 1555 1555 2.36 LINK OD1 ASP B 70 CA CA B 401 1555 1555 2.44 LINK O ASN B 72 CA CA B 401 1555 1555 2.18 LINK O GLN B 75 CA CA B 401 1555 1555 2.35 LINK OE1 GLU B 80 CA CA B 401 1555 1555 2.10 LINK OE2 GLU B 80 CA CA B 401 1555 1555 2.51 CRYST1 220.263 60.588 156.174 90.00 113.14 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004540 0.000000 0.001940 0.00000 SCALE2 0.000000 0.016505 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006963 0.00000