data_2GD9 # _entry.id 2GD9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2GD9 pdb_00002gd9 10.2210/pdb2gd9/pdb RCSB RCSB036977 ? ? WWPDB D_1000036977 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 359096 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2GD9 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-03-15 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of (2636623) from BACILLUS SUBTILIS at 2.30 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 2GD9 _cell.length_a 64.915 _cell.length_b 64.915 _cell.length_c 143.648 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.Int_Tables_number 78 _symmetry.space_group_name_H-M 'P 43' _symmetry.entry_id 2GD9 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hypothetical protein yyaP' 22007.590 2 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 2 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 5 water nat water 18.015 155 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)TNNLKQRRIILDLAVTLDGFIEGKNGEVDWCI(MSE)DPD(MSE)GFTDFLNQIDTILYGRKSFDLWGQYIPKN EDPDTEKELWKLVHSKKKYVFSRTQNEIDNQAIFINDNILEEVNKLKKNPGKDIWLYGGASLITTFINLGLVDEFRLSIH PVVLGEGKPLFIDVKQRINLK(MSE)VNTRTFSSGVVQIVYHWNG ; _entity_poly.pdbx_seq_one_letter_code_can ;GMTNNLKQRRIILDLAVTLDGFIEGKNGEVDWCIMDPDMGFTDFLNQIDTILYGRKSFDLWGQYIPKNEDPDTEKELWKL VHSKKKYVFSRTQNEIDNQAIFINDNILEEVNKLKKNPGKDIWLYGGASLITTFINLGLVDEFRLSIHPVVLGEGKPLFI DVKQRINLKMVNTRTFSSGVVQIVYHWNG ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 359096 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 THR n 1 4 ASN n 1 5 ASN n 1 6 LEU n 1 7 LYS n 1 8 GLN n 1 9 ARG n 1 10 ARG n 1 11 ILE n 1 12 ILE n 1 13 LEU n 1 14 ASP n 1 15 LEU n 1 16 ALA n 1 17 VAL n 1 18 THR n 1 19 LEU n 1 20 ASP n 1 21 GLY n 1 22 PHE n 1 23 ILE n 1 24 GLU n 1 25 GLY n 1 26 LYS n 1 27 ASN n 1 28 GLY n 1 29 GLU n 1 30 VAL n 1 31 ASP n 1 32 TRP n 1 33 CYS n 1 34 ILE n 1 35 MSE n 1 36 ASP n 1 37 PRO n 1 38 ASP n 1 39 MSE n 1 40 GLY n 1 41 PHE n 1 42 THR n 1 43 ASP n 1 44 PHE n 1 45 LEU n 1 46 ASN n 1 47 GLN n 1 48 ILE n 1 49 ASP n 1 50 THR n 1 51 ILE n 1 52 LEU n 1 53 TYR n 1 54 GLY n 1 55 ARG n 1 56 LYS n 1 57 SER n 1 58 PHE n 1 59 ASP n 1 60 LEU n 1 61 TRP n 1 62 GLY n 1 63 GLN n 1 64 TYR n 1 65 ILE n 1 66 PRO n 1 67 LYS n 1 68 ASN n 1 69 GLU n 1 70 ASP n 1 71 PRO n 1 72 ASP n 1 73 THR n 1 74 GLU n 1 75 LYS n 1 76 GLU n 1 77 LEU n 1 78 TRP n 1 79 LYS n 1 80 LEU n 1 81 VAL n 1 82 HIS n 1 83 SER n 1 84 LYS n 1 85 LYS n 1 86 LYS n 1 87 TYR n 1 88 VAL n 1 89 PHE n 1 90 SER n 1 91 ARG n 1 92 THR n 1 93 GLN n 1 94 ASN n 1 95 GLU n 1 96 ILE n 1 97 ASP n 1 98 ASN n 1 99 GLN n 1 100 ALA n 1 101 ILE n 1 102 PHE n 1 103 ILE n 1 104 ASN n 1 105 ASP n 1 106 ASN n 1 107 ILE n 1 108 LEU n 1 109 GLU n 1 110 GLU n 1 111 VAL n 1 112 ASN n 1 113 LYS n 1 114 LEU n 1 115 LYS n 1 116 LYS n 1 117 ASN n 1 118 PRO n 1 119 GLY n 1 120 LYS n 1 121 ASP n 1 122 ILE n 1 123 TRP n 1 124 LEU n 1 125 TYR n 1 126 GLY n 1 127 GLY n 1 128 ALA n 1 129 SER n 1 130 LEU n 1 131 ILE n 1 132 THR n 1 133 THR n 1 134 PHE n 1 135 ILE n 1 136 ASN n 1 137 LEU n 1 138 GLY n 1 139 LEU n 1 140 VAL n 1 141 ASP n 1 142 GLU n 1 143 PHE n 1 144 ARG n 1 145 LEU n 1 146 SER n 1 147 ILE n 1 148 HIS n 1 149 PRO n 1 150 VAL n 1 151 VAL n 1 152 LEU n 1 153 GLY n 1 154 GLU n 1 155 GLY n 1 156 LYS n 1 157 PRO n 1 158 LEU n 1 159 PHE n 1 160 ILE n 1 161 ASP n 1 162 VAL n 1 163 LYS n 1 164 GLN n 1 165 ARG n 1 166 ILE n 1 167 ASN n 1 168 LEU n 1 169 LYS n 1 170 MSE n 1 171 VAL n 1 172 ASN n 1 173 THR n 1 174 ARG n 1 175 THR n 1 176 PHE n 1 177 SER n 1 178 SER n 1 179 GLY n 1 180 VAL n 1 181 VAL n 1 182 GLN n 1 183 ILE n 1 184 VAL n 1 185 TYR n 1 186 HIS n 1 187 TRP n 1 188 ASN n 1 189 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacillus _entity_src_gen.pdbx_gene_src_gene yyaP _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1423 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YYAP_BACSU _struct_ref.pdbx_db_accession P37508 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2GD9 A 2 ? 189 ? P37508 1 ? 188 ? 1 188 2 1 2GD9 B 2 ? 189 ? P37508 1 ? 188 ? 1 188 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2GD9 GLY A 1 ? UNP P37508 ? ? 'expression tag' 0 1 1 2GD9 MSE A 2 ? UNP P37508 MET 1 'modified residue' 1 2 1 2GD9 MSE A 35 ? UNP P37508 MET 34 'modified residue' 34 3 1 2GD9 MSE A 39 ? UNP P37508 MET 38 'modified residue' 38 4 1 2GD9 MSE A 170 ? UNP P37508 MET 169 'modified residue' 169 5 2 2GD9 GLY B 1 ? UNP P37508 ? ? 'expression tag' 0 6 2 2GD9 MSE B 2 ? UNP P37508 MET 1 'modified residue' 1 7 2 2GD9 MSE B 35 ? UNP P37508 MET 34 'modified residue' 34 8 2 2GD9 MSE B 39 ? UNP P37508 MET 38 'modified residue' 38 9 2 2GD9 MSE B 170 ? UNP P37508 MET 169 'modified residue' 169 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2GD9 # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 65.30 _exptl_crystal.density_Matthews 3.57 _exptl_crystal.description ? _exptl_crystal.density_meas ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION,SITTING DROP,NANODROP' _exptl_crystal_grow.pH 7.9 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2M (NH4)2HPO4, 20.0% PEG-3350, No Buffer pH 7.9, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.details ? _diffrn_detector.pdbx_collection_date 2005-10-12 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double Crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.019859 1.0 2 0.979718 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '1.019859, 0.979718' _diffrn_source.pdbx_synchrotron_site ALS # _reflns.entry_id 2GD9 _reflns.d_resolution_high 2.300 _reflns.d_resolution_low 64.957 _reflns.number_obs 26393 _reflns.pdbx_Rmerge_I_obs 0.114 _reflns.pdbx_netI_over_sigmaI 6.200 _reflns.pdbx_Rsym_value 0.114 _reflns.pdbx_redundancy 3.700 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.30 2.36 ? 7192 1925 0.747 1.0 0.747 ? 3.70 100.00 ? ? 1 1 2.36 2.42 ? 7092 1902 0.67 1.1 0.67 ? 3.70 100.00 ? ? 2 1 2.42 2.49 ? 6961 1861 0.596 1.2 0.596 ? 3.70 100.00 ? ? 3 1 2.49 2.57 ? 6669 1775 0.564 1.3 0.564 ? 3.80 100.00 ? ? 4 1 2.57 2.66 ? 6465 1724 0.416 1.8 0.416 ? 3.80 100.00 ? ? 5 1 2.66 2.75 ? 6340 1695 0.342 2.1 0.342 ? 3.70 100.00 ? ? 6 1 2.75 2.85 ? 6081 1622 0.284 2.6 0.284 ? 3.70 100.00 ? ? 7 1 2.85 2.97 ? 5878 1572 0.195 3.8 0.195 ? 3.70 100.00 ? ? 8 1 2.97 3.10 ? 5616 1499 0.162 4.5 0.162 ? 3.70 100.00 ? ? 9 1 3.10 3.25 ? 5379 1432 0.121 6.1 0.121 ? 3.80 100.00 ? ? 10 1 3.25 3.43 ? 5143 1370 0.092 7.9 0.092 ? 3.80 100.00 ? ? 11 1 3.43 3.64 ? 4806 1283 0.076 9.1 0.076 ? 3.70 100.00 ? ? 12 1 3.64 3.89 ? 4508 1204 0.067 10.5 0.067 ? 3.70 100.00 ? ? 13 1 3.89 4.20 ? 4216 1132 0.054 9.5 0.054 ? 3.70 100.00 ? ? 14 1 4.20 4.60 ? 3901 1044 0.042 16.1 0.042 ? 3.70 100.00 ? ? 15 1 4.60 5.14 ? 3488 945 0.038 19.2 0.038 ? 3.70 100.00 ? ? 16 1 5.14 5.94 ? 3086 835 0.043 16.2 0.043 ? 3.70 100.00 ? ? 17 1 5.94 7.27 ? 2632 714 0.048 14.9 0.048 ? 3.70 100.00 ? ? 18 1 7.27 10.29 ? 1986 551 0.026 25.7 0.026 ? 3.60 100.00 ? ? 19 1 10.29 64.96 ? 1018 308 0.02 29.7 0.02 ? 3.30 98.40 ? ? 20 1 # _refine.ls_d_res_high 2.300 _refine.ls_d_res_low 59.16 _refine.pdbx_ls_sigma_F ? _refine.ls_percent_reflns_obs 99.930 _refine.ls_number_reflns_obs 26334 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. RESIDUES 63-74 OF BOTH CHAINS, AND 90-100 OF CHAIN B WERE DISORDERED AND NOT MODELED. 4. THE MAINCHAIN AND SIDECHAIN POSITIONS OF B186 WERE MODELED BASED ON THE POSITION OF THE A CHAIN. THE C-TERMINAL REGION OF BOTH MONOMERS LIES ON A NON-CRYSTALLOGRAPHIC TWO-FOLD AXIS, MAKING THE INTERPRETATION OF THE DISORDERED DENSITY IN THIS AREA PROBLEMATIC. 5. GLY125-126 IS IN THE CIS-CONFORMATION IN BOTH CHAINS. THIS IS LOCATED IN THE ACTIVE SITE AND IS CONSERVED IN OTHER DIHYDROFOLATE REDUCTAESES. 6. PO4 AND CL ARE MODELED IN THE PUTATIVE ACTIVE SITE. 7. EDO MODELED BASED ON CRYO CONDITIONS. ; _refine.ls_R_factor_all 0.21 _refine.ls_R_factor_R_work 0.207 _refine.ls_R_factor_R_free 0.254 _refine.ls_percent_reflns_R_free 5.200 _refine.ls_number_reflns_R_free 1364 _refine.B_iso_mean 31.972 _refine.aniso_B[1][1] 0.770 _refine.aniso_B[2][2] 0.770 _refine.aniso_B[3][3] -1.540 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.939 _refine.correlation_coeff_Fo_to_Fc_free 0.911 _refine.pdbx_overall_ESU_R 0.236 _refine.pdbx_overall_ESU_R_Free 0.207 _refine.overall_SU_ML 0.157 _refine.overall_SU_B 12.184 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.entry_id 2GD9 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs 0.20966 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2825 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 155 _refine_hist.number_atoms_total 3007 _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 59.16 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2927 0.016 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 2688 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3949 1.524 1.948 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 6244 0.855 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 347 6.871 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 138 40.179 24.710 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 531 16.373 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13 12.522 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 436 0.082 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 3166 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 596 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 455 0.164 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 2620 0.181 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1325 0.170 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 1724 0.084 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 146 0.179 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 16 0.168 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 84 0.197 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 15 0.150 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1777 0.708 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 722 0.126 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2790 1.170 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1342 1.607 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 1157 2.483 4.500 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 'MEDIUM POSITIONAL' A 328 0.130 0.500 1 'X-RAY DIFFRACTION' 1 ? ? ? 1 'LOOSE POSITIONAL' A 521 0.540 5.000 1 'X-RAY DIFFRACTION' 2 ? ? ? 1 'MEDIUM THERMAL' A 328 0.450 2.000 1 'X-RAY DIFFRACTION' 3 ? ? ? 1 'LOOSE THERMAL' A 521 0.970 10.000 1 'X-RAY DIFFRACTION' 4 ? ? ? 1 'MEDIUM POSITIONAL' A 78 0.220 0.500 2 'X-RAY DIFFRACTION' 5 ? ? ? 1 'LOOSE POSITIONAL' A 146 0.810 5.000 2 'X-RAY DIFFRACTION' 6 ? ? ? 1 'MEDIUM THERMAL' A 78 0.960 2.000 2 'X-RAY DIFFRACTION' 7 ? ? ? 1 'LOOSE THERMAL' A 146 1.950 10.000 2 'X-RAY DIFFRACTION' 8 ? ? ? 1 'MEDIUM POSITIONAL' A 472 0.160 0.500 3 'X-RAY DIFFRACTION' 9 ? ? ? 1 'LOOSE POSITIONAL' A 768 0.450 5.000 3 'X-RAY DIFFRACTION' 10 ? ? ? 1 'MEDIUM THERMAL' A 472 0.690 2.000 3 'X-RAY DIFFRACTION' 11 ? ? ? 1 'LOOSE THERMAL' A 768 1.090 10.000 3 'X-RAY DIFFRACTION' 12 ? ? ? # _refine_ls_shell.d_res_high 2.300 _refine_ls_shell.d_res_low 2.360 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.690 _refine_ls_shell.number_reflns_R_work 1824 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.275 _refine_ls_shell.R_factor_R_free 0.375 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 95 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1919 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B 2 1 A 2 2 B 3 1 A 3 2 B # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 1 A 1 A 56 5 . . GLY LYS A 0 A 55 1 ? 2 1 B 1 B 56 5 . . GLY LYS B 0 B 55 1 ? 1 1 A 75 A 87 5 . . LYS TYR A 74 A 86 2 ? 2 1 B 75 B 87 5 . . LYS TYR B 74 B 86 2 ? 1 1 A 107 A 187 5 . . ILE TRP A 106 A 186 3 ? 2 1 B 107 B 188 5 . . ILE ASN B 106 B 187 3 ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? 3 ? # _struct.entry_id 2GD9 _struct.title 'Crystal structure of a putative dihydrofolate reductase (bsu40760, yyap) from bacillus subtilis at 2.30 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, oxidoreductase' _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.entry_id 2GD9 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 3 ? I N N 4 ? J N N 5 ? K N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 40 ? GLN A 47 ? GLY A 39 GLN A 46 1 ? 8 HELX_P HELX_P2 2 ARG A 55 ? GLY A 62 ? ARG A 54 GLY A 61 1 ? 8 HELX_P HELX_P3 3 GLU A 76 ? LYS A 84 ? GLU A 75 LYS A 83 1 ? 9 HELX_P HELX_P4 4 ILE A 103 ? ASN A 117 ? ILE A 102 ASN A 116 1 ? 15 HELX_P HELX_P5 5 GLY A 127 ? LEU A 137 ? GLY A 126 LEU A 136 1 ? 11 HELX_P HELX_P6 6 ASP B 36 ? MSE B 39 ? ASP B 35 MSE B 38 5 ? 4 HELX_P HELX_P7 7 GLY B 40 ? GLN B 47 ? GLY B 39 GLN B 46 1 ? 8 HELX_P HELX_P8 8 ARG B 55 ? GLY B 62 ? ARG B 54 GLY B 61 1 ? 8 HELX_P HELX_P9 9 GLU B 74 ? SER B 83 ? GLU B 73 SER B 82 1 ? 10 HELX_P HELX_P10 10 ILE B 103 ? LYS B 116 ? ILE B 102 LYS B 115 1 ? 14 HELX_P HELX_P11 11 GLY B 127 ? LEU B 137 ? GLY B 126 LEU B 136 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A THR 3 N ? ? A MSE 1 A THR 2 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale3 covale both ? A ILE 34 C ? ? ? 1_555 A MSE 35 N ? ? A ILE 33 A MSE 34 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale4 covale both ? A MSE 35 C ? ? ? 1_555 A ASP 36 N ? ? A MSE 34 A ASP 35 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale5 covale both ? A ASP 38 C ? ? ? 1_555 A MSE 39 N ? ? A ASP 37 A MSE 38 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale6 covale both ? A MSE 39 C ? ? ? 1_555 A GLY 40 N ? ? A MSE 38 A GLY 39 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale7 covale both ? A LYS 169 C ? ? ? 1_555 A MSE 170 N ? ? A LYS 168 A MSE 169 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale8 covale both ? A MSE 170 C ? ? ? 1_555 A VAL 171 N ? ? A MSE 169 A VAL 170 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale9 covale both ? B GLY 1 C ? ? ? 1_555 B MSE 2 N ? ? B GLY 0 B MSE 1 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale10 covale both ? B MSE 2 C ? ? ? 1_555 B THR 3 N ? ? B MSE 1 B THR 2 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale11 covale both ? B ILE 34 C ? ? ? 1_555 B MSE 35 N ? ? B ILE 33 B MSE 34 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale12 covale both ? B MSE 35 C ? ? ? 1_555 B ASP 36 N ? ? B MSE 34 B ASP 35 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale13 covale both ? B ASP 38 C ? ? ? 1_555 B MSE 39 N ? ? B ASP 37 B MSE 38 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale14 covale both ? B MSE 39 C ? ? ? 1_555 B GLY 40 N ? ? B MSE 38 B GLY 39 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale15 covale both ? B LYS 169 C ? ? ? 1_555 B MSE 170 N ? ? B LYS 168 B MSE 169 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale16 covale both ? B MSE 170 C ? ? ? 1_555 B VAL 171 N ? ? B MSE 169 B VAL 170 1_555 ? ? ? ? ? ? ? 1.344 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 126 A . ? GLY 125 A GLY 127 A ? GLY 126 A 1 2.20 2 GLY 126 B . ? GLY 125 B GLY 127 B ? GLY 126 B 1 0.83 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? C ? 2 ? D ? 2 ? E ? 2 ? F ? 7 ? G ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? parallel F 2 3 ? parallel F 3 4 ? parallel F 4 5 ? parallel F 5 6 ? anti-parallel F 6 7 ? anti-parallel G 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 85 ? PHE A 89 ? LYS A 84 PHE A 88 A 2 ILE A 48 ? GLY A 54 ? ILE A 47 GLY A 53 A 3 ASP A 121 ? GLY A 126 ? ASP A 120 GLY A 125 A 4 ILE A 11 ? VAL A 17 ? ILE A 10 VAL A 16 A 5 GLU A 142 ? ILE A 147 ? GLU A 141 ILE A 146 A 6 VAL A 181 ? HIS A 186 ? VAL A 180 HIS A 185 A 7 LYS A 169 ? THR A 175 ? LYS A 168 THR A 174 B 1 PHE A 22 ? GLU A 24 ? PHE A 21 GLU A 23 B 2 LYS A 156 ? PRO A 157 ? LYS A 155 PRO A 156 C 1 THR A 92 ? ASN A 94 ? THR A 91 ASN A 93 C 2 GLN A 99 ? ILE A 101 ? GLN A 98 ILE A 100 D 1 VAL A 150 ? VAL A 151 ? VAL A 149 VAL A 150 D 2 ILE B 166 ? ASN B 167 ? ILE B 165 ASN B 166 E 1 ILE A 166 ? ASN A 167 ? ILE A 165 ASN A 166 E 2 VAL B 150 ? VAL B 151 ? VAL B 149 VAL B 150 F 1 LYS B 85 ? PHE B 89 ? LYS B 84 PHE B 88 F 2 ILE B 48 ? GLY B 54 ? ILE B 47 GLY B 53 F 3 ASP B 121 ? GLY B 126 ? ASP B 120 GLY B 125 F 4 ILE B 11 ? THR B 18 ? ILE B 10 THR B 17 F 5 GLU B 142 ? HIS B 148 ? GLU B 141 HIS B 147 F 6 VAL B 181 ? HIS B 186 ? VAL B 180 HIS B 185 F 7 LYS B 169 ? THR B 175 ? LYS B 168 THR B 174 G 1 PHE B 22 ? GLU B 24 ? PHE B 21 GLU B 23 G 2 LYS B 156 ? PRO B 157 ? LYS B 155 PRO B 156 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 85 ? O LYS A 84 N ASP A 49 ? N ASP A 48 A 2 3 N LEU A 52 ? N LEU A 51 O TRP A 123 ? O TRP A 122 A 3 4 O ILE A 122 ? O ILE A 121 N ILE A 12 ? N ILE A 11 A 4 5 N LEU A 13 ? N LEU A 12 O ARG A 144 ? O ARG A 143 A 5 6 N LEU A 145 ? N LEU A 144 O ILE A 183 ? O ILE A 182 A 6 7 O VAL A 184 ? O VAL A 183 N VAL A 171 ? N VAL A 170 B 1 2 N ILE A 23 ? N ILE A 22 O LYS A 156 ? O LYS A 155 C 1 2 N ASN A 94 ? N ASN A 93 O GLN A 99 ? O GLN A 98 D 1 2 N VAL A 151 ? N VAL A 150 O ILE B 166 ? O ILE B 165 E 1 2 N ILE A 166 ? N ILE A 165 O VAL B 151 ? O VAL B 150 F 1 2 O TYR B 87 ? O TYR B 86 N TYR B 53 ? N TYR B 52 F 2 3 N LEU B 52 ? N LEU B 51 O TRP B 123 ? O TRP B 122 F 3 4 O ILE B 122 ? O ILE B 121 N ILE B 12 ? N ILE B 11 F 4 5 N LEU B 13 ? N LEU B 12 O ARG B 144 ? O ARG B 143 F 5 6 N ILE B 147 ? N ILE B 146 O VAL B 181 ? O VAL B 180 F 6 7 O VAL B 184 ? O VAL B 183 N VAL B 171 ? N VAL B 170 G 1 2 N ILE B 23 ? N ILE B 22 O LYS B 156 ? O LYS B 155 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 189 ? 5 'BINDING SITE FOR RESIDUE CL A 189' AC2 Software A PO4 190 ? 8 'BINDING SITE FOR RESIDUE PO4 A 190' AC3 Software B PO4 189 ? 6 'BINDING SITE FOR RESIDUE PO4 B 189' AC4 Software A EDO 191 ? 5 'BINDING SITE FOR RESIDUE EDO A 191' AC5 Software A EDO 192 ? 3 'BINDING SITE FOR RESIDUE EDO A 192' AC6 Software B EDO 190 ? 5 'BINDING SITE FOR RESIDUE EDO B 190' AC7 Software A EDO 193 ? 4 'BINDING SITE FOR RESIDUE EDO A 193' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLY A 54 ? GLY A 53 . ? 1_555 ? 2 AC1 5 LYS A 56 ? LYS A 55 . ? 1_555 ? 3 AC1 5 SER A 57 ? SER A 56 . ? 1_555 ? 4 AC1 5 ARG A 91 ? ARG A 90 . ? 1_555 ? 5 AC1 5 GLY A 127 ? GLY A 126 . ? 1_555 ? 6 AC2 8 LYS A 56 ? LYS A 55 . ? 1_555 ? 7 AC2 8 ARG A 91 ? ARG A 90 . ? 1_555 ? 8 AC2 8 SER A 129 ? SER A 128 . ? 1_555 ? 9 AC2 8 LYS A 156 ? LYS A 155 . ? 1_555 ? 10 AC2 8 EDO F . ? EDO A 192 . ? 1_555 ? 11 AC2 8 HOH J . ? HOH A 200 . ? 1_555 ? 12 AC2 8 HOH J . ? HOH A 265 . ? 1_555 ? 13 AC2 8 HOH J . ? HOH A 268 . ? 1_555 ? 14 AC3 6 LYS B 56 ? LYS B 55 . ? 1_555 ? 15 AC3 6 ALA B 128 ? ALA B 127 . ? 1_555 ? 16 AC3 6 SER B 129 ? SER B 128 . ? 1_555 ? 17 AC3 6 LYS B 156 ? LYS B 155 . ? 1_555 ? 18 AC3 6 HOH K . ? HOH B 228 . ? 1_555 ? 19 AC3 6 HOH K . ? HOH B 251 . ? 1_555 ? 20 AC4 5 ILE A 23 ? ILE A 22 . ? 1_555 ? 21 AC4 5 GLU A 24 ? GLU A 23 . ? 1_555 ? 22 AC4 5 ILE A 131 ? ILE A 130 . ? 1_555 ? 23 AC4 5 HOH J . ? HOH A 229 . ? 1_555 ? 24 AC4 5 HOH J . ? HOH A 276 . ? 1_555 ? 25 AC5 3 LYS A 156 ? LYS A 155 . ? 1_555 ? 26 AC5 3 PO4 D . ? PO4 A 190 . ? 1_555 ? 27 AC5 3 HOH J . ? HOH A 256 . ? 1_555 ? 28 AC6 5 LEU B 15 ? LEU B 14 . ? 1_555 ? 29 AC6 5 GLU B 24 ? GLU B 23 . ? 1_555 ? 30 AC6 5 TYR B 125 ? TYR B 124 . ? 1_555 ? 31 AC6 5 ALA B 128 ? ALA B 127 . ? 1_555 ? 32 AC6 5 HOH K . ? HOH B 252 . ? 1_555 ? 33 AC7 4 THR A 18 ? THR A 17 . ? 1_555 ? 34 AC7 4 LEU A 19 ? LEU A 18 . ? 1_555 ? 35 AC7 4 THR B 18 ? THR B 17 . ? 1_555 ? 36 AC7 4 LEU B 19 ? LEU B 18 . ? 1_555 ? # _database_PDB_matrix.entry_id 2GD9 _database_PDB_matrix.origx[1][1] 1.00000 _database_PDB_matrix.origx[1][2] 0.00000 _database_PDB_matrix.origx[1][3] 0.00000 _database_PDB_matrix.origx[2][1] 0.00000 _database_PDB_matrix.origx[2][2] 1.00000 _database_PDB_matrix.origx[2][3] 0.00000 _database_PDB_matrix.origx[3][1] 0.00000 _database_PDB_matrix.origx[3][2] 0.00000 _database_PDB_matrix.origx[3][3] 1.00000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2GD9 _atom_sites.fract_transf_matrix[1][1] 0.01541 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01541 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.00696 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 THR 3 2 2 THR THR A . n A 1 4 ASN 4 3 3 ASN ASN A . n A 1 5 ASN 5 4 4 ASN ASN A . n A 1 6 LEU 6 5 5 LEU LEU A . n A 1 7 LYS 7 6 6 LYS LYS A . n A 1 8 GLN 8 7 7 GLN GLN A . n A 1 9 ARG 9 8 8 ARG ARG A . n A 1 10 ARG 10 9 9 ARG ARG A . n A 1 11 ILE 11 10 10 ILE ILE A . n A 1 12 ILE 12 11 11 ILE ILE A . n A 1 13 LEU 13 12 12 LEU LEU A . n A 1 14 ASP 14 13 13 ASP ASP A . n A 1 15 LEU 15 14 14 LEU LEU A . n A 1 16 ALA 16 15 15 ALA ALA A . n A 1 17 VAL 17 16 16 VAL VAL A . n A 1 18 THR 18 17 17 THR THR A . n A 1 19 LEU 19 18 18 LEU LEU A . n A 1 20 ASP 20 19 19 ASP ASP A . n A 1 21 GLY 21 20 20 GLY GLY A . n A 1 22 PHE 22 21 21 PHE PHE A . n A 1 23 ILE 23 22 22 ILE ILE A . n A 1 24 GLU 24 23 23 GLU GLU A . n A 1 25 GLY 25 24 24 GLY GLY A . n A 1 26 LYS 26 25 25 LYS LYS A . n A 1 27 ASN 27 26 26 ASN ASN A . n A 1 28 GLY 28 27 27 GLY GLY A . n A 1 29 GLU 29 28 28 GLU GLU A . n A 1 30 VAL 30 29 29 VAL VAL A . n A 1 31 ASP 31 30 30 ASP ASP A . n A 1 32 TRP 32 31 31 TRP TRP A . n A 1 33 CYS 33 32 32 CYS CYS A . n A 1 34 ILE 34 33 33 ILE ILE A . n A 1 35 MSE 35 34 34 MSE MSE A . n A 1 36 ASP 36 35 35 ASP ASP A . n A 1 37 PRO 37 36 36 PRO PRO A . n A 1 38 ASP 38 37 37 ASP ASP A . n A 1 39 MSE 39 38 38 MSE MSE A . n A 1 40 GLY 40 39 39 GLY GLY A . n A 1 41 PHE 41 40 40 PHE PHE A . n A 1 42 THR 42 41 41 THR THR A . n A 1 43 ASP 43 42 42 ASP ASP A . n A 1 44 PHE 44 43 43 PHE PHE A . n A 1 45 LEU 45 44 44 LEU LEU A . n A 1 46 ASN 46 45 45 ASN ASN A . n A 1 47 GLN 47 46 46 GLN GLN A . n A 1 48 ILE 48 47 47 ILE ILE A . n A 1 49 ASP 49 48 48 ASP ASP A . n A 1 50 THR 50 49 49 THR THR A . n A 1 51 ILE 51 50 50 ILE ILE A . n A 1 52 LEU 52 51 51 LEU LEU A . n A 1 53 TYR 53 52 52 TYR TYR A . n A 1 54 GLY 54 53 53 GLY GLY A . n A 1 55 ARG 55 54 54 ARG ARG A . n A 1 56 LYS 56 55 55 LYS LYS A . n A 1 57 SER 57 56 56 SER SER A . n A 1 58 PHE 58 57 57 PHE PHE A . n A 1 59 ASP 59 58 58 ASP ASP A . n A 1 60 LEU 60 59 59 LEU LEU A . n A 1 61 TRP 61 60 60 TRP TRP A . n A 1 62 GLY 62 61 61 GLY GLY A . n A 1 63 GLN 63 62 62 GLN GLN A . n A 1 64 TYR 64 63 63 TYR TYR A . n A 1 65 ILE 65 64 ? ? ? A . n A 1 66 PRO 66 65 ? ? ? A . n A 1 67 LYS 67 66 ? ? ? A . n A 1 68 ASN 68 67 ? ? ? A . n A 1 69 GLU 69 68 ? ? ? A . n A 1 70 ASP 70 69 ? ? ? A . n A 1 71 PRO 71 70 ? ? ? A . n A 1 72 ASP 72 71 ? ? ? A . n A 1 73 THR 73 72 ? ? ? A . n A 1 74 GLU 74 73 ? ? ? A . n A 1 75 LYS 75 74 74 LYS LYS A . n A 1 76 GLU 76 75 75 GLU GLU A . n A 1 77 LEU 77 76 76 LEU LEU A . n A 1 78 TRP 78 77 77 TRP TRP A . n A 1 79 LYS 79 78 78 LYS LYS A . n A 1 80 LEU 80 79 79 LEU LEU A . n A 1 81 VAL 81 80 80 VAL VAL A . n A 1 82 HIS 82 81 81 HIS HIS A . n A 1 83 SER 83 82 82 SER SER A . n A 1 84 LYS 84 83 83 LYS LYS A . n A 1 85 LYS 85 84 84 LYS LYS A . n A 1 86 LYS 86 85 85 LYS LYS A . n A 1 87 TYR 87 86 86 TYR TYR A . n A 1 88 VAL 88 87 87 VAL VAL A . n A 1 89 PHE 89 88 88 PHE PHE A . n A 1 90 SER 90 89 89 SER SER A . n A 1 91 ARG 91 90 90 ARG ARG A . n A 1 92 THR 92 91 91 THR THR A . n A 1 93 GLN 93 92 92 GLN GLN A . n A 1 94 ASN 94 93 93 ASN ASN A . n A 1 95 GLU 95 94 94 GLU GLU A . n A 1 96 ILE 96 95 95 ILE ILE A . n A 1 97 ASP 97 96 96 ASP ASP A . n A 1 98 ASN 98 97 97 ASN ASN A . n A 1 99 GLN 99 98 98 GLN GLN A . n A 1 100 ALA 100 99 99 ALA ALA A . n A 1 101 ILE 101 100 100 ILE ILE A . n A 1 102 PHE 102 101 101 PHE PHE A . n A 1 103 ILE 103 102 102 ILE ILE A . n A 1 104 ASN 104 103 103 ASN ASN A . n A 1 105 ASP 105 104 104 ASP ASP A . n A 1 106 ASN 106 105 105 ASN ASN A . n A 1 107 ILE 107 106 106 ILE ILE A . n A 1 108 LEU 108 107 107 LEU LEU A . n A 1 109 GLU 109 108 108 GLU GLU A . n A 1 110 GLU 110 109 109 GLU GLU A . n A 1 111 VAL 111 110 110 VAL VAL A . n A 1 112 ASN 112 111 111 ASN ASN A . n A 1 113 LYS 113 112 112 LYS LYS A . n A 1 114 LEU 114 113 113 LEU LEU A . n A 1 115 LYS 115 114 114 LYS LYS A . n A 1 116 LYS 116 115 115 LYS LYS A . n A 1 117 ASN 117 116 116 ASN ASN A . n A 1 118 PRO 118 117 117 PRO PRO A . n A 1 119 GLY 119 118 118 GLY GLY A . n A 1 120 LYS 120 119 119 LYS LYS A . n A 1 121 ASP 121 120 120 ASP ASP A . n A 1 122 ILE 122 121 121 ILE ILE A . n A 1 123 TRP 123 122 122 TRP TRP A . n A 1 124 LEU 124 123 123 LEU LEU A . n A 1 125 TYR 125 124 124 TYR TYR A . n A 1 126 GLY 126 125 125 GLY GLY A . n A 1 127 GLY 127 126 126 GLY GLY A . n A 1 128 ALA 128 127 127 ALA ALA A . n A 1 129 SER 129 128 128 SER SER A . n A 1 130 LEU 130 129 129 LEU LEU A . n A 1 131 ILE 131 130 130 ILE ILE A . n A 1 132 THR 132 131 131 THR THR A . n A 1 133 THR 133 132 132 THR THR A . n A 1 134 PHE 134 133 133 PHE PHE A . n A 1 135 ILE 135 134 134 ILE ILE A . n A 1 136 ASN 136 135 135 ASN ASN A . n A 1 137 LEU 137 136 136 LEU LEU A . n A 1 138 GLY 138 137 137 GLY GLY A . n A 1 139 LEU 139 138 138 LEU LEU A . n A 1 140 VAL 140 139 139 VAL VAL A . n A 1 141 ASP 141 140 140 ASP ASP A . n A 1 142 GLU 142 141 141 GLU GLU A . n A 1 143 PHE 143 142 142 PHE PHE A . n A 1 144 ARG 144 143 143 ARG ARG A . n A 1 145 LEU 145 144 144 LEU LEU A . n A 1 146 SER 146 145 145 SER SER A . n A 1 147 ILE 147 146 146 ILE ILE A . n A 1 148 HIS 148 147 147 HIS HIS A . n A 1 149 PRO 149 148 148 PRO PRO A . n A 1 150 VAL 150 149 149 VAL VAL A . n A 1 151 VAL 151 150 150 VAL VAL A . n A 1 152 LEU 152 151 151 LEU LEU A . n A 1 153 GLY 153 152 152 GLY GLY A . n A 1 154 GLU 154 153 153 GLU GLU A . n A 1 155 GLY 155 154 154 GLY GLY A . n A 1 156 LYS 156 155 155 LYS LYS A . n A 1 157 PRO 157 156 156 PRO PRO A . n A 1 158 LEU 158 157 157 LEU LEU A . n A 1 159 PHE 159 158 158 PHE PHE A . n A 1 160 ILE 160 159 159 ILE ILE A . n A 1 161 ASP 161 160 160 ASP ASP A . n A 1 162 VAL 162 161 161 VAL VAL A . n A 1 163 LYS 163 162 162 LYS LYS A . n A 1 164 GLN 164 163 163 GLN GLN A . n A 1 165 ARG 165 164 164 ARG ARG A . n A 1 166 ILE 166 165 165 ILE ILE A . n A 1 167 ASN 167 166 166 ASN ASN A . n A 1 168 LEU 168 167 167 LEU LEU A . n A 1 169 LYS 169 168 168 LYS LYS A . n A 1 170 MSE 170 169 169 MSE MSE A . n A 1 171 VAL 171 170 170 VAL VAL A . n A 1 172 ASN 172 171 171 ASN ASN A . n A 1 173 THR 173 172 172 THR THR A . n A 1 174 ARG 174 173 173 ARG ARG A . n A 1 175 THR 175 174 174 THR THR A . n A 1 176 PHE 176 175 175 PHE PHE A . n A 1 177 SER 177 176 176 SER SER A . n A 1 178 SER 178 177 177 SER SER A . n A 1 179 GLY 179 178 178 GLY GLY A . n A 1 180 VAL 180 179 179 VAL VAL A . n A 1 181 VAL 181 180 180 VAL VAL A . n A 1 182 GLN 182 181 181 GLN GLN A . n A 1 183 ILE 183 182 182 ILE ILE A . n A 1 184 VAL 184 183 183 VAL VAL A . n A 1 185 TYR 185 184 184 TYR TYR A . n A 1 186 HIS 186 185 185 HIS HIS A . n A 1 187 TRP 187 186 186 TRP TRP A . n A 1 188 ASN 188 187 ? ? ? A . n A 1 189 GLY 189 188 ? ? ? A . n B 1 1 GLY 1 0 0 GLY GLY B . n B 1 2 MSE 2 1 1 MSE MSE B . n B 1 3 THR 3 2 2 THR THR B . n B 1 4 ASN 4 3 3 ASN ASN B . n B 1 5 ASN 5 4 4 ASN ASN B . n B 1 6 LEU 6 5 5 LEU LEU B . n B 1 7 LYS 7 6 6 LYS LYS B . n B 1 8 GLN 8 7 7 GLN GLN B . n B 1 9 ARG 9 8 8 ARG ARG B . n B 1 10 ARG 10 9 9 ARG ARG B . n B 1 11 ILE 11 10 10 ILE ILE B . n B 1 12 ILE 12 11 11 ILE ILE B . n B 1 13 LEU 13 12 12 LEU LEU B . n B 1 14 ASP 14 13 13 ASP ASP B . n B 1 15 LEU 15 14 14 LEU LEU B . n B 1 16 ALA 16 15 15 ALA ALA B . n B 1 17 VAL 17 16 16 VAL VAL B . n B 1 18 THR 18 17 17 THR THR B . n B 1 19 LEU 19 18 18 LEU LEU B . n B 1 20 ASP 20 19 19 ASP ASP B . n B 1 21 GLY 21 20 20 GLY GLY B . n B 1 22 PHE 22 21 21 PHE PHE B . n B 1 23 ILE 23 22 22 ILE ILE B . n B 1 24 GLU 24 23 23 GLU GLU B . n B 1 25 GLY 25 24 24 GLY GLY B . n B 1 26 LYS 26 25 25 LYS LYS B . n B 1 27 ASN 27 26 26 ASN ASN B . n B 1 28 GLY 28 27 27 GLY GLY B . n B 1 29 GLU 29 28 28 GLU GLU B . n B 1 30 VAL 30 29 29 VAL VAL B . n B 1 31 ASP 31 30 30 ASP ASP B . n B 1 32 TRP 32 31 31 TRP TRP B . n B 1 33 CYS 33 32 32 CYS CYS B . n B 1 34 ILE 34 33 33 ILE ILE B . n B 1 35 MSE 35 34 34 MSE MSE B . n B 1 36 ASP 36 35 35 ASP ASP B . n B 1 37 PRO 37 36 36 PRO PRO B . n B 1 38 ASP 38 37 37 ASP ASP B . n B 1 39 MSE 39 38 38 MSE MSE B . n B 1 40 GLY 40 39 39 GLY GLY B . n B 1 41 PHE 41 40 40 PHE PHE B . n B 1 42 THR 42 41 41 THR THR B . n B 1 43 ASP 43 42 42 ASP ASP B . n B 1 44 PHE 44 43 43 PHE PHE B . n B 1 45 LEU 45 44 44 LEU LEU B . n B 1 46 ASN 46 45 45 ASN ASN B . n B 1 47 GLN 47 46 46 GLN GLN B . n B 1 48 ILE 48 47 47 ILE ILE B . n B 1 49 ASP 49 48 48 ASP ASP B . n B 1 50 THR 50 49 49 THR THR B . n B 1 51 ILE 51 50 50 ILE ILE B . n B 1 52 LEU 52 51 51 LEU LEU B . n B 1 53 TYR 53 52 52 TYR TYR B . n B 1 54 GLY 54 53 53 GLY GLY B . n B 1 55 ARG 55 54 54 ARG ARG B . n B 1 56 LYS 56 55 55 LYS LYS B . n B 1 57 SER 57 56 56 SER SER B . n B 1 58 PHE 58 57 57 PHE PHE B . n B 1 59 ASP 59 58 58 ASP ASP B . n B 1 60 LEU 60 59 59 LEU LEU B . n B 1 61 TRP 61 60 60 TRP TRP B . n B 1 62 GLY 62 61 61 GLY GLY B . n B 1 63 GLN 63 62 62 GLN GLN B . n B 1 64 TYR 64 63 63 TYR TYR B . n B 1 65 ILE 65 64 64 ILE ILE B . n B 1 66 PRO 66 65 ? ? ? B . n B 1 67 LYS 67 66 ? ? ? B . n B 1 68 ASN 68 67 ? ? ? B . n B 1 69 GLU 69 68 ? ? ? B . n B 1 70 ASP 70 69 ? ? ? B . n B 1 71 PRO 71 70 ? ? ? B . n B 1 72 ASP 72 71 ? ? ? B . n B 1 73 THR 73 72 ? ? ? B . n B 1 74 GLU 74 73 73 GLU GLU B . n B 1 75 LYS 75 74 74 LYS LYS B . n B 1 76 GLU 76 75 75 GLU GLU B . n B 1 77 LEU 77 76 76 LEU LEU B . n B 1 78 TRP 78 77 77 TRP TRP B . n B 1 79 LYS 79 78 78 LYS LYS B . n B 1 80 LEU 80 79 79 LEU LEU B . n B 1 81 VAL 81 80 80 VAL VAL B . n B 1 82 HIS 82 81 81 HIS HIS B . n B 1 83 SER 83 82 82 SER SER B . n B 1 84 LYS 84 83 83 LYS LYS B . n B 1 85 LYS 85 84 84 LYS LYS B . n B 1 86 LYS 86 85 85 LYS LYS B . n B 1 87 TYR 87 86 86 TYR TYR B . n B 1 88 VAL 88 87 87 VAL VAL B . n B 1 89 PHE 89 88 88 PHE PHE B . n B 1 90 SER 90 89 89 SER SER B . n B 1 91 ARG 91 90 90 ARG ARG B . n B 1 92 THR 92 91 ? ? ? B . n B 1 93 GLN 93 92 ? ? ? B . n B 1 94 ASN 94 93 ? ? ? B . n B 1 95 GLU 95 94 ? ? ? B . n B 1 96 ILE 96 95 ? ? ? B . n B 1 97 ASP 97 96 ? ? ? B . n B 1 98 ASN 98 97 ? ? ? B . n B 1 99 GLN 99 98 ? ? ? B . n B 1 100 ALA 100 99 ? ? ? B . n B 1 101 ILE 101 100 100 ILE ILE B . n B 1 102 PHE 102 101 101 PHE PHE B . n B 1 103 ILE 103 102 102 ILE ILE B . n B 1 104 ASN 104 103 103 ASN ASN B . n B 1 105 ASP 105 104 104 ASP ASP B . n B 1 106 ASN 106 105 105 ASN ASN B . n B 1 107 ILE 107 106 106 ILE ILE B . n B 1 108 LEU 108 107 107 LEU LEU B . n B 1 109 GLU 109 108 108 GLU GLU B . n B 1 110 GLU 110 109 109 GLU GLU B . n B 1 111 VAL 111 110 110 VAL VAL B . n B 1 112 ASN 112 111 111 ASN ASN B . n B 1 113 LYS 113 112 112 LYS LYS B . n B 1 114 LEU 114 113 113 LEU LEU B . n B 1 115 LYS 115 114 114 LYS LYS B . n B 1 116 LYS 116 115 115 LYS LYS B . n B 1 117 ASN 117 116 116 ASN ASN B . n B 1 118 PRO 118 117 117 PRO PRO B . n B 1 119 GLY 119 118 118 GLY GLY B . n B 1 120 LYS 120 119 119 LYS LYS B . n B 1 121 ASP 121 120 120 ASP ASP B . n B 1 122 ILE 122 121 121 ILE ILE B . n B 1 123 TRP 123 122 122 TRP TRP B . n B 1 124 LEU 124 123 123 LEU LEU B . n B 1 125 TYR 125 124 124 TYR TYR B . n B 1 126 GLY 126 125 125 GLY GLY B . n B 1 127 GLY 127 126 126 GLY GLY B . n B 1 128 ALA 128 127 127 ALA ALA B . n B 1 129 SER 129 128 128 SER SER B . n B 1 130 LEU 130 129 129 LEU LEU B . n B 1 131 ILE 131 130 130 ILE ILE B . n B 1 132 THR 132 131 131 THR THR B . n B 1 133 THR 133 132 132 THR THR B . n B 1 134 PHE 134 133 133 PHE PHE B . n B 1 135 ILE 135 134 134 ILE ILE B . n B 1 136 ASN 136 135 135 ASN ASN B . n B 1 137 LEU 137 136 136 LEU LEU B . n B 1 138 GLY 138 137 137 GLY GLY B . n B 1 139 LEU 139 138 138 LEU LEU B . n B 1 140 VAL 140 139 139 VAL VAL B . n B 1 141 ASP 141 140 140 ASP ASP B . n B 1 142 GLU 142 141 141 GLU GLU B . n B 1 143 PHE 143 142 142 PHE PHE B . n B 1 144 ARG 144 143 143 ARG ARG B . n B 1 145 LEU 145 144 144 LEU LEU B . n B 1 146 SER 146 145 145 SER SER B . n B 1 147 ILE 147 146 146 ILE ILE B . n B 1 148 HIS 148 147 147 HIS HIS B . n B 1 149 PRO 149 148 148 PRO PRO B . n B 1 150 VAL 150 149 149 VAL VAL B . n B 1 151 VAL 151 150 150 VAL VAL B . n B 1 152 LEU 152 151 151 LEU LEU B . n B 1 153 GLY 153 152 152 GLY GLY B . n B 1 154 GLU 154 153 153 GLU GLU B . n B 1 155 GLY 155 154 154 GLY GLY B . n B 1 156 LYS 156 155 155 LYS LYS B . n B 1 157 PRO 157 156 156 PRO PRO B . n B 1 158 LEU 158 157 157 LEU LEU B . n B 1 159 PHE 159 158 158 PHE PHE B . n B 1 160 ILE 160 159 159 ILE ILE B . n B 1 161 ASP 161 160 160 ASP ASP B . n B 1 162 VAL 162 161 161 VAL VAL B . n B 1 163 LYS 163 162 162 LYS LYS B . n B 1 164 GLN 164 163 163 GLN GLN B . n B 1 165 ARG 165 164 164 ARG ARG B . n B 1 166 ILE 166 165 165 ILE ILE B . n B 1 167 ASN 167 166 166 ASN ASN B . n B 1 168 LEU 168 167 167 LEU LEU B . n B 1 169 LYS 169 168 168 LYS LYS B . n B 1 170 MSE 170 169 169 MSE MSE B . n B 1 171 VAL 171 170 170 VAL VAL B . n B 1 172 ASN 172 171 171 ASN ASN B . n B 1 173 THR 173 172 172 THR THR B . n B 1 174 ARG 174 173 173 ARG ARG B . n B 1 175 THR 175 174 174 THR THR B . n B 1 176 PHE 176 175 175 PHE PHE B . n B 1 177 SER 177 176 176 SER SER B . n B 1 178 SER 178 177 177 SER SER B . n B 1 179 GLY 179 178 178 GLY GLY B . n B 1 180 VAL 180 179 179 VAL VAL B . n B 1 181 VAL 181 180 180 VAL VAL B . n B 1 182 GLN 182 181 181 GLN GLN B . n B 1 183 ILE 183 182 182 ILE ILE B . n B 1 184 VAL 184 183 183 VAL VAL B . n B 1 185 TYR 185 184 184 TYR TYR B . n B 1 186 HIS 186 185 185 HIS HIS B . n B 1 187 TRP 187 186 186 TRP TRP B . n B 1 188 ASN 188 187 187 ASN ASN B . n B 1 189 GLY 189 188 ? ? ? B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 189 1 CL CL A . D 3 PO4 1 190 2 PO4 PO4 A . E 4 EDO 1 191 4 EDO EDO A . F 4 EDO 1 192 5 EDO EDO A . G 4 EDO 1 193 7 EDO EDO A . H 3 PO4 1 189 3 PO4 PO4 B . I 4 EDO 1 190 6 EDO EDO B . J 5 HOH 1 194 8 HOH HOH A . J 5 HOH 2 195 9 HOH HOH A . J 5 HOH 3 196 11 HOH HOH A . J 5 HOH 4 197 12 HOH HOH A . J 5 HOH 5 198 13 HOH HOH A . J 5 HOH 6 199 16 HOH HOH A . J 5 HOH 7 200 17 HOH HOH A . J 5 HOH 8 201 18 HOH HOH A . J 5 HOH 9 202 19 HOH HOH A . J 5 HOH 10 203 20 HOH HOH A . J 5 HOH 11 204 22 HOH HOH A . J 5 HOH 12 205 23 HOH HOH A . J 5 HOH 13 206 24 HOH HOH A . J 5 HOH 14 207 25 HOH HOH A . J 5 HOH 15 208 27 HOH HOH A . J 5 HOH 16 209 29 HOH HOH A . J 5 HOH 17 210 30 HOH HOH A . J 5 HOH 18 211 31 HOH HOH A . J 5 HOH 19 212 33 HOH HOH A . J 5 HOH 20 213 34 HOH HOH A . J 5 HOH 21 214 36 HOH HOH A . J 5 HOH 22 215 37 HOH HOH A . J 5 HOH 23 216 38 HOH HOH A . J 5 HOH 24 217 39 HOH HOH A . J 5 HOH 25 218 40 HOH HOH A . J 5 HOH 26 219 43 HOH HOH A . J 5 HOH 27 220 45 HOH HOH A . J 5 HOH 28 221 47 HOH HOH A . J 5 HOH 29 222 48 HOH HOH A . J 5 HOH 30 223 50 HOH HOH A . J 5 HOH 31 224 51 HOH HOH A . J 5 HOH 32 225 53 HOH HOH A . J 5 HOH 33 226 55 HOH HOH A . J 5 HOH 34 227 56 HOH HOH A . J 5 HOH 35 228 61 HOH HOH A . J 5 HOH 36 229 64 HOH HOH A . J 5 HOH 37 230 65 HOH HOH A . J 5 HOH 38 231 66 HOH HOH A . J 5 HOH 39 232 67 HOH HOH A . J 5 HOH 40 233 68 HOH HOH A . J 5 HOH 41 234 69 HOH HOH A . J 5 HOH 42 235 70 HOH HOH A . J 5 HOH 43 236 73 HOH HOH A . J 5 HOH 44 237 76 HOH HOH A . J 5 HOH 45 238 83 HOH HOH A . J 5 HOH 46 239 84 HOH HOH A . J 5 HOH 47 240 85 HOH HOH A . J 5 HOH 48 241 86 HOH HOH A . J 5 HOH 49 242 88 HOH HOH A . J 5 HOH 50 243 90 HOH HOH A . J 5 HOH 51 244 91 HOH HOH A . J 5 HOH 52 245 96 HOH HOH A . J 5 HOH 53 246 99 HOH HOH A . J 5 HOH 54 247 102 HOH HOH A . J 5 HOH 55 248 103 HOH HOH A . J 5 HOH 56 249 104 HOH HOH A . J 5 HOH 57 250 105 HOH HOH A . J 5 HOH 58 251 107 HOH HOH A . J 5 HOH 59 252 109 HOH HOH A . J 5 HOH 60 253 111 HOH HOH A . J 5 HOH 61 254 112 HOH HOH A . J 5 HOH 62 255 115 HOH HOH A . J 5 HOH 63 256 117 HOH HOH A . J 5 HOH 64 257 119 HOH HOH A . J 5 HOH 65 258 121 HOH HOH A . J 5 HOH 66 259 122 HOH HOH A . J 5 HOH 67 260 125 HOH HOH A . J 5 HOH 68 261 126 HOH HOH A . J 5 HOH 69 262 127 HOH HOH A . J 5 HOH 70 263 129 HOH HOH A . J 5 HOH 71 264 130 HOH HOH A . J 5 HOH 72 265 131 HOH HOH A . J 5 HOH 73 266 133 HOH HOH A . J 5 HOH 74 267 135 HOH HOH A . J 5 HOH 75 268 136 HOH HOH A . J 5 HOH 76 269 137 HOH HOH A . J 5 HOH 77 270 139 HOH HOH A . J 5 HOH 78 271 140 HOH HOH A . J 5 HOH 79 272 142 HOH HOH A . J 5 HOH 80 273 143 HOH HOH A . J 5 HOH 81 274 145 HOH HOH A . J 5 HOH 82 275 150 HOH HOH A . J 5 HOH 83 276 153 HOH HOH A . J 5 HOH 84 277 154 HOH HOH A . J 5 HOH 85 278 155 HOH HOH A . J 5 HOH 86 279 160 HOH HOH A . J 5 HOH 87 280 161 HOH HOH A . J 5 HOH 88 281 162 HOH HOH A . K 5 HOH 1 191 10 HOH HOH B . K 5 HOH 2 192 14 HOH HOH B . K 5 HOH 3 193 15 HOH HOH B . K 5 HOH 4 194 21 HOH HOH B . K 5 HOH 5 195 26 HOH HOH B . K 5 HOH 6 196 28 HOH HOH B . K 5 HOH 7 197 32 HOH HOH B . K 5 HOH 8 198 35 HOH HOH B . K 5 HOH 9 199 41 HOH HOH B . K 5 HOH 10 200 42 HOH HOH B . K 5 HOH 11 201 44 HOH HOH B . K 5 HOH 12 202 46 HOH HOH B . K 5 HOH 13 203 49 HOH HOH B . K 5 HOH 14 204 52 HOH HOH B . K 5 HOH 15 205 54 HOH HOH B . K 5 HOH 16 206 57 HOH HOH B . K 5 HOH 17 207 58 HOH HOH B . K 5 HOH 18 208 59 HOH HOH B . K 5 HOH 19 209 60 HOH HOH B . K 5 HOH 20 210 62 HOH HOH B . K 5 HOH 21 211 63 HOH HOH B . K 5 HOH 22 212 71 HOH HOH B . K 5 HOH 23 213 72 HOH HOH B . K 5 HOH 24 214 74 HOH HOH B . K 5 HOH 25 215 75 HOH HOH B . K 5 HOH 26 216 77 HOH HOH B . K 5 HOH 27 217 78 HOH HOH B . K 5 HOH 28 218 79 HOH HOH B . K 5 HOH 29 219 80 HOH HOH B . K 5 HOH 30 220 81 HOH HOH B . K 5 HOH 31 221 82 HOH HOH B . K 5 HOH 32 222 87 HOH HOH B . K 5 HOH 33 223 89 HOH HOH B . K 5 HOH 34 224 92 HOH HOH B . K 5 HOH 35 225 93 HOH HOH B . K 5 HOH 36 226 94 HOH HOH B . K 5 HOH 37 227 95 HOH HOH B . K 5 HOH 38 228 97 HOH HOH B . K 5 HOH 39 229 98 HOH HOH B . K 5 HOH 40 230 100 HOH HOH B . K 5 HOH 41 231 101 HOH HOH B . K 5 HOH 42 232 106 HOH HOH B . K 5 HOH 43 233 108 HOH HOH B . K 5 HOH 44 234 110 HOH HOH B . K 5 HOH 45 235 113 HOH HOH B . K 5 HOH 46 236 114 HOH HOH B . K 5 HOH 47 237 116 HOH HOH B . K 5 HOH 48 238 118 HOH HOH B . K 5 HOH 49 239 120 HOH HOH B . K 5 HOH 50 240 123 HOH HOH B . K 5 HOH 51 241 124 HOH HOH B . K 5 HOH 52 242 128 HOH HOH B . K 5 HOH 53 243 132 HOH HOH B . K 5 HOH 54 244 134 HOH HOH B . K 5 HOH 55 245 138 HOH HOH B . K 5 HOH 56 246 141 HOH HOH B . K 5 HOH 57 247 144 HOH HOH B . K 5 HOH 58 248 146 HOH HOH B . K 5 HOH 59 249 147 HOH HOH B . K 5 HOH 60 250 148 HOH HOH B . K 5 HOH 61 251 149 HOH HOH B . K 5 HOH 62 252 151 HOH HOH B . K 5 HOH 63 253 152 HOH HOH B . K 5 HOH 64 254 156 HOH HOH B . K 5 HOH 65 255 157 HOH HOH B . K 5 HOH 66 256 158 HOH HOH B . K 5 HOH 67 257 159 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 35 A MSE 34 ? MET SELENOMETHIONINE 3 A MSE 39 A MSE 38 ? MET SELENOMETHIONINE 4 A MSE 170 A MSE 169 ? MET SELENOMETHIONINE 5 B MSE 2 B MSE 1 ? MET SELENOMETHIONINE 6 B MSE 35 B MSE 34 ? MET SELENOMETHIONINE 7 B MSE 39 B MSE 38 ? MET SELENOMETHIONINE 8 B MSE 170 B MSE 169 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3890 ? 1 MORE -31 ? 1 'SSA (A^2)' 18690 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-03-28 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 17.2326 28.0834 83.6810 -0.0571 -0.0049 -0.0628 -0.0538 0.0058 -0.0036 1.1127 0.4902 2.2774 -0.1111 -0.1891 -0.0655 0.0122 0.0276 -0.0397 0.0528 -0.0640 0.0585 -0.0263 0.2152 -0.2131 'X-RAY DIFFRACTION' 2 ? refined 28.3700 47.0015 59.8926 0.0017 -0.0903 -0.0488 0.0221 -0.0094 0.0033 0.5083 1.5452 2.5250 0.3384 -0.4054 -0.7035 0.0562 0.0281 -0.0843 -0.0376 0.0997 0.1701 0.0151 -0.2930 -0.1067 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 187 ALL A 0 A 186 'X-RAY DIFFRACTION' ? 2 2 B 1 B 187 ALL B 0 B 186 'X-RAY DIFFRACTION' ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 1 SCALA . ? program 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran ? 2 PDB_EXTRACT 1.701 'Nov. 1, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 3 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 4 CCP4 '(SCALA)' ? ? ? ? 'data scaling' ? ? ? 5 SHELXD . ? ? ? ? phasing ? ? ? 6 autoSHARP . ? ? ? ? phasing ? ? ? 7 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 143 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 A _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 143 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 A _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 143 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 A _pdbx_validate_rmsd_angle.angle_value 123.87 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.57 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 23 ? ? -171.10 143.33 2 1 LEU A 59 ? ? -91.47 -64.55 3 1 LYS A 119 ? ? -98.45 -153.58 4 1 LYS B 119 ? ? -84.71 -158.51 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU 5 ? CG ? A LEU 6 CG 2 1 Y 1 A LEU 5 ? CD1 ? A LEU 6 CD1 3 1 Y 1 A LEU 5 ? CD2 ? A LEU 6 CD2 4 1 Y 1 A LYS 78 ? CG ? A LYS 79 CG 5 1 Y 1 A LYS 78 ? CD ? A LYS 79 CD 6 1 Y 1 A LYS 78 ? CE ? A LYS 79 CE 7 1 Y 1 A LYS 78 ? NZ ? A LYS 79 NZ 8 1 Y 1 A LYS 112 ? CD ? A LYS 113 CD 9 1 Y 1 A LYS 112 ? CE ? A LYS 113 CE 10 1 Y 1 A LYS 112 ? NZ ? A LYS 113 NZ 11 1 Y 1 B ARG 9 ? CZ ? B ARG 10 CZ 12 1 Y 1 B ARG 9 ? NH1 ? B ARG 10 NH1 13 1 Y 1 B ARG 9 ? NH2 ? B ARG 10 NH2 14 1 Y 1 B ARG 90 ? CG ? B ARG 91 CG 15 1 Y 1 B ARG 90 ? CD ? B ARG 91 CD 16 1 Y 1 B ARG 90 ? NE ? B ARG 91 NE 17 1 Y 1 B ARG 90 ? CZ ? B ARG 91 CZ 18 1 Y 1 B ARG 90 ? NH1 ? B ARG 91 NH1 19 1 Y 1 B ARG 90 ? NH2 ? B ARG 91 NH2 20 1 Y 1 B LYS 112 ? CE ? B LYS 113 CE 21 1 Y 1 B LYS 112 ? NZ ? B LYS 113 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ILE 64 ? A ILE 65 2 1 Y 1 A PRO 65 ? A PRO 66 3 1 Y 1 A LYS 66 ? A LYS 67 4 1 Y 1 A ASN 67 ? A ASN 68 5 1 Y 1 A GLU 68 ? A GLU 69 6 1 Y 1 A ASP 69 ? A ASP 70 7 1 Y 1 A PRO 70 ? A PRO 71 8 1 Y 1 A ASP 71 ? A ASP 72 9 1 Y 1 A THR 72 ? A THR 73 10 1 Y 1 A GLU 73 ? A GLU 74 11 1 Y 1 A ASN 187 ? A ASN 188 12 1 Y 1 A GLY 188 ? A GLY 189 13 1 Y 1 B PRO 65 ? B PRO 66 14 1 Y 1 B LYS 66 ? B LYS 67 15 1 Y 1 B ASN 67 ? B ASN 68 16 1 Y 1 B GLU 68 ? B GLU 69 17 1 Y 1 B ASP 69 ? B ASP 70 18 1 Y 1 B PRO 70 ? B PRO 71 19 1 Y 1 B ASP 71 ? B ASP 72 20 1 Y 1 B THR 72 ? B THR 73 21 1 Y 1 B THR 91 ? B THR 92 22 1 Y 1 B GLN 92 ? B GLN 93 23 1 Y 1 B ASN 93 ? B ASN 94 24 1 Y 1 B GLU 94 ? B GLU 95 25 1 Y 1 B ILE 95 ? B ILE 96 26 1 Y 1 B ASP 96 ? B ASP 97 27 1 Y 1 B ASN 97 ? B ASN 98 28 1 Y 1 B GLN 98 ? B GLN 99 29 1 Y 1 B ALA 99 ? B ALA 100 30 1 Y 1 B GLY 188 ? B GLY 189 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'PHOSPHATE ION' PO4 4 1,2-ETHANEDIOL EDO 5 water HOH #