data_2GM0 # _entry.id 2GM0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2GM0 pdb_00002gm0 10.2210/pdb2gm0/pdb RCSB RCSB037280 ? ? WWPDB D_1000037280 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2GM0 _pdbx_database_status.recvd_initial_deposition_date 2006-04-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ulyanov, N.B.' 1 'Mujeeb, A.' 2 'Du, Z.' 3 'Tonelli, M.' 4 'Parslow, T.G.' 5 'James, T.L.' 6 # _citation.id primary _citation.title 'NMR Structure of the Full-length Linear Dimer of Stem-Loop-1 RNA in the HIV-1 Dimer Initiation Site.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 281 _citation.page_first 16168 _citation.page_last 16177 _citation.year 2006 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16603544 _citation.pdbx_database_id_DOI 10.1074/jbc.M601711200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ulyanov, N.B.' 1 ? primary 'Mujeeb, A.' 2 ? primary 'Du, Z.' 3 ? primary 'Tonelli, M.' 4 ? primary 'Parslow, T.G.' 5 ? primary 'James, T.L.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'RNA (35-MER)' _entity.formula_weight 11368.844 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'Stem-loop SL1' # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GACGGCUUGCUGAAGCGCGCACGGCAAGAGGCGUC _entity_poly.pdbx_seq_one_letter_code_can GACGGCUUGCUGAAGCGCGCACGGCAAGAGGCGUC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 C n 1 4 G n 1 5 G n 1 6 C n 1 7 U n 1 8 U n 1 9 G n 1 10 C n 1 11 U n 1 12 G n 1 13 A n 1 14 A n 1 15 G n 1 16 C n 1 17 G n 1 18 C n 1 19 G n 1 20 C n 1 21 A n 1 22 C n 1 23 G n 1 24 G n 1 25 C n 1 26 A n 1 27 A n 1 28 G n 1 29 A n 1 30 G n 1 31 G n 1 32 C n 1 33 G n 1 34 U n 1 35 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'RNA was prepared by in vitro transcription with T7 RNA polymerase' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2GM0 _struct_ref.pdbx_db_accession 2GM0 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2GM0 A 1 ? 35 ? 2GM0 1 ? 35 ? 1 35 2 1 2GM0 B 1 ? 35 ? 2GM0 36 ? 70 ? 36 70 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 1 '2D TOCSY' 1 3 2 '2D NOESY' 2 4 1 3D_13C-separated_NOESY 3 5 1 'non-decoupled constant-time 1H-13C TROSY-HSQC' 5 6 2 '2D 1H-15N HSQC' 4 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 303 ambient 6.4 '10 mM potassium phosphate buffer, 250 mM NaCl, 0.1 mM Mg Cl2' . K 2 288 ambient 6.4 '10 mM potassium phosphate buffer, 250 mM NaCl, 0.1 mM Mg Cl2' . K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '0.75 mM unlabeled SL1 RNA, 10 mM potassium phosphate buffer, 250 mM NaCl, 0.1 mM MgCl2, pH 6.4, D2O' D2O 2 '0.75 mM unlabeled SL1 RNA, 10 mM potassium phosphate buffer, 250 mM NaCl, 0.1 mM MgCl2,pH 6.4, 90% H2O, 10% D2O' '90% H2O/10% D2O' 3 '0.75 mM of uniformly 13C, 15N-labeled SL1 RNA, 10 mM potassium phosphate buffer, 250 mM NaCl, 0.1 mM MgCl2, pH 6.4, D2O' D2O 4 ;0.75 mM of uniformly 13C, 15N-labeled SL1 RNA, 10 mM potassium phosphate buffer, 250 mM NaCl, 0.1 mM MgCl2, pH 6.4, 90% H2O, 10% D2O ; '90% H2O/10% D2O' 5 ;0.75 mM of uniformly 13C, 15N-labeled SL1 RNA, 10 mM potassium phosphate buffer, 250 mM NaCl, 0.1 mM MgCl2, pH 6.4, filamentous phage Pf1, D2O ; D2O # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 INOVA Varian 600 ? 2 'Unity Inova' Varian 900 ? # _pdbx_nmr_refine.entry_id 2GM0 _pdbx_nmr_refine.method ;Restrained Metropolis Monte Carlo and restrained minimization in helical parameter's space ; _pdbx_nmr_refine.details ;The structures are determined based on a total of 842 restraints; 608 are NOE-derived distance restraints, 104 hydrogen bond restraints, and 130 residual dipolar coupling (RDC) restraints ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2GM0 _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2GM0 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1 ? 1 processing NMRPipe 2.3 Delaglio 2 'iterative matrix relaxation' MARDIGRAS 3.21 'Borgias et al' 3 'data analysis' Sparky 3.110 Goddard 4 refinement DYANA 1.5 Guntert 5 refinement miniCarlo ? 'Zhurkin & Ulyanov' 6 # _exptl.entry_id 2GM0 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 2GM0 _struct.title 'Linear dimer of stemloop SL1 from HIV-1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2GM0 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'LINEAR DIMER, A-RICH INTERNAL LOOP, G-RICH INTERNAL LOOP, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 35 N3 ? ? A G 1 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 35 O2 ? ? A G 1 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 35 N4 ? ? A G 1 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 2 N1 ? ? ? 1_555 B U 34 N3 ? ? A A 2 B U 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 2 N6 ? ? ? 1_555 B U 34 O4 ? ? A A 2 B U 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 33 N1 ? ? A C 3 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 33 O6 ? ? A C 3 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 33 N2 ? ? A C 3 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 O6 ? ? ? 1_555 B G 31 N2 ? ? A G 4 B G 66 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 32 N3 ? ? A G 4 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 32 O2 ? ? A G 4 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 32 N4 ? ? A G 4 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N1 ? ? ? 1_555 B A 29 N1 ? ? A G 5 B A 64 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 B A 29 N6 ? ? A G 5 B A 64 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog15 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 28 N1 ? ? A C 6 B G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 28 O6 ? ? A C 6 B G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 28 N2 ? ? A C 6 B G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 27 N1 ? ? A U 7 B A 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 27 N6 ? ? A U 7 B A 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 26 N1 ? ? A U 8 B A 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 26 N6 ? ? A U 8 B A 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 9 N1 ? ? ? 1_555 B C 25 N3 ? ? A G 9 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 25 O2 ? ? A G 9 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 9 O6 ? ? ? 1_555 B C 25 N4 ? ? A G 9 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 24 N1 ? ? A C 10 B G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 24 O6 ? ? A C 10 B G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 24 N2 ? ? A C 10 B G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 11 N3 ? ? ? 1_555 B G 23 O6 ? ? A U 11 B G 58 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog29 hydrog ? ? A U 11 O2 ? ? ? 1_555 B G 23 N1 ? ? A U 11 B G 58 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog30 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 22 N3 ? ? A G 12 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 22 O2 ? ? A G 12 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 22 N4 ? ? A G 12 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 13 N1 ? ? ? 1_555 B A 21 N6 ? ? A A 13 B A 56 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog34 hydrog ? ? A A 14 N1 ? ? ? 1_555 B A 21 N6 ? ? A A 14 B A 56 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog35 hydrog ? ? A G 15 N1 ? ? ? 1_555 B C 20 N3 ? ? A G 15 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 15 N2 ? ? ? 1_555 B C 20 O2 ? ? A G 15 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 15 O6 ? ? ? 1_555 B C 20 N4 ? ? A G 15 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 16 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 16 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 16 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 16 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 16 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 16 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 17 N1 ? ? ? 1_555 B C 18 N3 ? ? A G 17 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 17 N2 ? ? ? 1_555 B C 18 O2 ? ? A G 17 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 17 O6 ? ? ? 1_555 B C 18 N4 ? ? A G 17 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 18 N3 ? ? ? 1_555 B G 17 N1 ? ? A C 18 B G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 18 N4 ? ? ? 1_555 B G 17 O6 ? ? A C 18 B G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 18 O2 ? ? ? 1_555 B G 17 N2 ? ? A C 18 B G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 16 N3 ? ? A G 19 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 16 O2 ? ? A G 19 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 16 N4 ? ? A G 19 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 20 N3 ? ? ? 1_555 B G 15 N1 ? ? A C 20 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 20 N4 ? ? ? 1_555 B G 15 O6 ? ? A C 20 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 20 O2 ? ? ? 1_555 B G 15 N2 ? ? A C 20 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A A 21 N6 ? ? ? 1_555 B A 13 N1 ? ? A A 21 B A 48 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog54 hydrog ? ? A A 21 N6 ? ? ? 1_555 B A 14 N1 ? ? A A 21 B A 49 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog55 hydrog ? ? A C 22 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 22 B G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 22 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 22 B G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 22 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 22 B G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 23 N1 ? ? ? 1_555 B U 11 O2 ? ? A G 23 B U 46 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog59 hydrog ? ? A G 23 O6 ? ? ? 1_555 B U 11 N3 ? ? A G 23 B U 46 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog60 hydrog ? ? A G 24 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 24 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 24 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 24 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 24 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 24 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 25 N3 ? ? ? 1_555 B G 9 N1 ? ? A C 25 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 25 N4 ? ? ? 1_555 B G 9 O6 ? ? A C 25 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 25 O2 ? ? ? 1_555 B G 9 N2 ? ? A C 25 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A A 26 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 26 B U 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A A 26 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 26 B U 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 27 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 27 B U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 27 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 27 B U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 28 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 28 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 28 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 28 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 28 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 28 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A A 29 N1 ? ? ? 1_555 B G 5 N1 ? ? A A 29 B G 40 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog74 hydrog ? ? A A 29 N6 ? ? ? 1_555 B G 5 O6 ? ? A A 29 B G 40 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog75 hydrog ? ? A G 31 N2 ? ? ? 1_555 B G 4 O6 ? ? A G 31 B G 39 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog76 hydrog ? ? A C 32 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 32 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 32 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 32 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 32 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 32 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 33 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 33 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 33 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 33 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 33 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 33 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A U 34 N3 ? ? ? 1_555 B A 2 N1 ? ? A U 34 B A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A U 34 O4 ? ? ? 1_555 B A 2 N6 ? ? A U 34 B A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A C 35 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 35 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A C 35 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 35 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A C 35 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 35 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B G 30 N2 ? ? ? 1_555 B C 32 O2 ? ? B G 65 B C 67 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2GM0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2GM0 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 A 2 2 2 A A A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 C 6 6 6 C C A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 G 9 9 9 G G A . n A 1 10 C 10 10 10 C C A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 A 13 13 13 A A A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 C 16 16 16 C C A . n A 1 17 G 17 17 17 G G A . n A 1 18 C 18 18 18 C C A . n A 1 19 G 19 19 19 G G A . n A 1 20 C 20 20 20 C C A . n A 1 21 A 21 21 21 A A A . n A 1 22 C 22 22 22 C C A . n A 1 23 G 23 23 23 G G A . n A 1 24 G 24 24 24 G G A . n A 1 25 C 25 25 25 C C A . n A 1 26 A 26 26 26 A A A . n A 1 27 A 27 27 27 A A A . n A 1 28 G 28 28 28 G G A . n A 1 29 A 29 29 29 A A A . n A 1 30 G 30 30 30 G G A . n A 1 31 G 31 31 31 G G A . n A 1 32 C 32 32 32 C C A . n A 1 33 G 33 33 33 G G A . n A 1 34 U 34 34 34 U U A . n A 1 35 C 35 35 35 C C A . n B 1 1 G 1 36 36 G G B . n B 1 2 A 2 37 37 A A B . n B 1 3 C 3 38 38 C C B . n B 1 4 G 4 39 39 G G B . n B 1 5 G 5 40 40 G G B . n B 1 6 C 6 41 41 C C B . n B 1 7 U 7 42 42 U U B . n B 1 8 U 8 43 43 U U B . n B 1 9 G 9 44 44 G G B . n B 1 10 C 10 45 45 C C B . n B 1 11 U 11 46 46 U U B . n B 1 12 G 12 47 47 G G B . n B 1 13 A 13 48 48 A A B . n B 1 14 A 14 49 49 A A B . n B 1 15 G 15 50 50 G G B . n B 1 16 C 16 51 51 C C B . n B 1 17 G 17 52 52 G G B . n B 1 18 C 18 53 53 C C B . n B 1 19 G 19 54 54 G G B . n B 1 20 C 20 55 55 C C B . n B 1 21 A 21 56 56 A A B . n B 1 22 C 22 57 57 C C B . n B 1 23 G 23 58 58 G G B . n B 1 24 G 24 59 59 G G B . n B 1 25 C 25 60 60 C C B . n B 1 26 A 26 61 61 A A B . n B 1 27 A 27 62 62 A A B . n B 1 28 G 28 63 63 G G B . n B 1 29 A 29 64 64 A A B . n B 1 30 G 30 65 65 G G B . n B 1 31 G 31 66 66 G G B . n B 1 32 C 32 67 67 C C B . n B 1 33 G 33 68 68 G G B . n B 1 34 U 34 69 69 U U B . n B 1 35 C 35 70 70 C C B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-04-25 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 10 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 A _pdbx_validate_rmsd_angle.auth_seq_id_1 21 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C2'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 A _pdbx_validate_rmsd_angle.auth_seq_id_2 21 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 A _pdbx_validate_rmsd_angle.auth_seq_id_3 21 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 106.98 _pdbx_validate_rmsd_angle.angle_target_value 101.50 _pdbx_validate_rmsd_angle.angle_deviation 5.48 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.80 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2GM0 'double helix' 2GM0 'a-form double helix' 2GM0 'bulge loop' 2GM0 'mismatched base pair' 2GM0 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 35 1_555 0.052 -0.175 -0.289 2.116 12.857 -2.241 1 A_G1:C70_B A 1 ? B 70 ? 19 1 1 A A 2 1_555 B U 34 1_555 -0.379 -0.232 -0.473 -2.297 -6.631 -1.638 2 A_A2:U69_B A 2 ? B 69 ? 20 1 1 A C 3 1_555 B G 33 1_555 0.193 -0.186 0.053 8.413 9.352 0.836 3 A_C3:G68_B A 3 ? B 68 ? 19 1 1 A G 4 1_555 B C 32 1_555 0.120 -0.422 1.020 -29.120 -20.394 -18.350 4 A_G4:C67_B A 4 ? B 67 ? 19 1 1 A G 5 1_555 B A 29 1_555 0.242 1.593 0.224 28.305 23.784 -22.277 5 A_G5:A64_B A 5 ? B 64 ? 8 ? 1 A C 6 1_555 B G 28 1_555 0.210 -0.168 -0.579 23.486 -31.654 0.415 6 A_C6:G63_B A 6 ? B 63 ? 19 1 1 A U 7 1_555 B A 27 1_555 -0.443 -0.139 -0.784 5.449 -9.510 -3.302 7 A_U7:A62_B A 7 ? B 62 ? 20 1 1 A U 8 1_555 B A 26 1_555 -0.183 -0.190 -0.740 5.782 -0.659 -2.849 8 A_U8:A61_B A 8 ? B 61 ? 20 1 1 A G 9 1_555 B C 25 1_555 -0.576 -0.304 0.008 7.197 -9.226 -0.392 9 A_G9:C60_B A 9 ? B 60 ? 19 1 1 A C 10 1_555 B G 24 1_555 -0.246 -0.102 -0.323 11.353 -5.282 -1.329 10 A_C10:G59_B A 10 ? B 59 ? 19 1 1 A U 11 1_555 B G 23 1_555 1.935 -0.469 -0.689 18.320 -0.972 -1.352 11 A_U11:G58_B A 11 ? B 58 ? 28 1 1 A G 12 1_555 B C 22 1_555 -0.140 -0.528 -1.205 -10.554 13.664 -12.548 12 A_G12:C57_B A 12 ? B 57 ? 19 1 1 A A 14 1_555 B A 21 1_555 2.937 1.030 1.089 5.465 18.209 9.700 13 A_A14:A56_B A 14 ? B 56 ? ? 1 1 A G 15 1_555 B C 20 1_555 0.062 0.008 -0.546 -39.381 -24.623 0.129 14 A_G15:C55_B A 15 ? B 55 ? 19 1 1 A C 16 1_555 B G 19 1_555 0.012 -0.159 0.240 -15.977 -10.988 -0.384 15 A_C16:G54_B A 16 ? B 54 ? 19 1 1 A G 17 1_555 B C 18 1_555 0.146 -0.116 -0.063 -9.310 -11.677 -1.629 16 A_G17:C53_B A 17 ? B 53 ? 19 1 1 A C 18 1_555 B G 17 1_555 -0.162 -0.114 -0.054 9.615 -11.464 -1.690 17 A_C18:G52_B A 18 ? B 52 ? 19 1 1 A G 19 1_555 B C 16 1_555 -0.029 -0.164 0.242 16.278 -11.309 -0.358 18 A_G19:C51_B A 19 ? B 51 ? 19 1 1 A C 20 1_555 B G 15 1_555 -0.061 0.011 -0.531 39.448 -23.952 -0.075 19 A_C20:G50_B A 20 ? B 50 ? 19 1 1 A A 21 1_555 B A 14 1_555 -2.945 1.025 1.096 -5.563 18.379 9.888 20 A_A21:A49_B A 21 ? B 49 ? ? 1 1 A C 22 1_555 B G 12 1_555 0.108 -0.532 -1.212 10.604 14.120 -12.573 21 A_C22:G47_B A 22 ? B 47 ? 19 1 1 A G 23 1_555 B U 11 1_555 -1.918 -0.466 -0.703 -18.801 -0.962 -1.418 22 A_G23:U46_B A 23 ? B 46 ? 28 1 1 A G 24 1_555 B C 10 1_555 0.235 -0.104 -0.362 -11.383 -4.850 -1.375 23 A_G24:C45_B A 24 ? B 45 ? 19 1 1 A C 25 1_555 B G 9 1_555 0.615 -0.319 -0.074 -6.182 -8.364 -0.288 24 A_C25:G44_B A 25 ? B 44 ? 19 1 1 A A 26 1_555 B U 8 1_555 -0.086 -0.255 -0.842 -6.509 0.292 -3.699 25 A_A26:U43_B A 26 ? B 43 ? 20 1 1 A A 27 1_555 B U 7 1_555 0.542 -0.139 -0.730 -4.886 -10.006 -3.418 26 A_A27:U42_B A 27 ? B 42 ? 20 1 1 A G 28 1_555 B C 6 1_555 -0.081 -0.115 -0.371 -24.737 -28.462 0.143 27 A_G28:C41_B A 28 ? B 41 ? 19 1 1 A A 29 1_555 B G 5 1_555 -0.506 1.495 0.580 -31.251 21.920 -16.616 28 A_A29:G40_B A 29 ? B 40 ? 8 1 1 A C 32 1_555 B G 4 1_555 -0.216 -0.588 1.222 26.918 -18.179 -16.259 29 A_C32:G39_B A 32 ? B 39 ? 19 1 1 A G 33 1_555 B C 3 1_555 -0.175 -0.189 0.066 -8.145 9.547 0.767 30 A_G33:C38_B A 33 ? B 38 ? 19 1 1 A U 34 1_555 B A 2 1_555 0.368 -0.235 -0.530 3.413 -6.200 -1.611 31 A_U34:A37_B A 34 ? B 37 ? 20 1 1 A C 35 1_555 B G 1 1_555 0.015 -0.173 -0.268 -2.199 10.890 -2.214 32 A_C35:G36_B A 35 ? B 36 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 35 1_555 A A 2 1_555 B U 34 1_555 -0.024 -1.821 3.442 1.290 22.469 27.429 -5.878 0.204 1.552 39.939 -2.292 35.343 1 AA_G1A2:U69C70_BB A 1 ? B 70 ? A 2 ? B 69 ? 1 A A 2 1_555 B U 34 1_555 A C 3 1_555 B G 33 1_555 0.367 -1.877 3.121 -7.019 5.136 31.620 -4.123 -1.737 2.652 9.209 12.586 32.765 2 AA_A2C3:G68U69_BB A 2 ? B 69 ? A 3 ? B 68 ? 1 A C 3 1_555 B G 33 1_555 A G 4 1_555 B C 32 1_555 -0.873 -1.715 4.869 0.038 22.862 40.773 -4.818 1.110 3.488 30.133 -0.050 46.506 3 AA_C3G4:C67G68_BB A 3 ? B 68 ? A 4 ? B 67 ? 1 A G 4 1_555 B C 32 1_555 A G 5 1_555 B A 29 1_555 0.436 -4.315 4.628 -31.438 -21.174 25.368 -2.201 -5.606 4.320 -32.067 47.612 45.348 4 AA_G4G5:A64C67_BB A 4 ? B 67 ? A 5 ? B 64 ? 1 A G 5 1_555 B A 29 1_555 A C 6 1_555 B G 28 1_555 1.181 -2.137 3.075 5.408 13.362 33.034 -5.079 -1.259 2.233 22.228 -8.997 35.961 5 AA_G5C6:G63A64_BB A 5 ? B 64 ? A 6 ? B 63 ? 1 A C 6 1_555 B G 28 1_555 A U 7 1_555 B A 27 1_555 -0.668 -1.752 3.853 0.996 16.028 32.145 -5.283 1.237 2.686 26.948 -1.675 35.838 6 AA_C6U7:A62G63_BB A 6 ? B 63 ? A 7 ? B 62 ? 1 A U 7 1_555 B A 27 1_555 A U 8 1_555 B A 26 1_555 -0.044 -1.592 3.635 -1.599 4.584 26.161 -4.748 -0.353 3.309 10.018 3.493 26.600 7 AA_U7U8:A61A62_BB A 7 ? B 62 ? A 8 ? B 61 ? 1 A U 8 1_555 B A 26 1_555 A G 9 1_555 B C 25 1_555 -0.069 -1.338 3.852 -3.671 -1.578 30.759 -2.140 -0.711 3.895 -2.959 6.885 31.011 8 AA_U8G9:C60A61_BB A 8 ? B 61 ? A 9 ? B 60 ? 1 A G 9 1_555 B C 25 1_555 A C 10 1_555 B G 24 1_555 0.029 -1.510 3.183 -0.070 10.381 34.255 -3.821 -0.057 2.629 17.144 0.115 35.748 9 AA_G9C10:G59C60_BB A 9 ? B 60 ? A 10 ? B 59 ? 1 A C 10 1_555 B G 24 1_555 A U 11 1_555 B G 23 1_555 0.268 -1.269 3.207 1.777 7.558 38.944 -2.705 -0.198 2.929 11.201 -2.633 39.681 10 AA_C10U11:G58G59_BB A 10 ? B 59 ? A 11 ? B 58 ? 1 A U 11 1_555 B G 23 1_555 A G 12 1_555 B C 22 1_555 -0.872 -2.678 4.740 3.245 6.677 21.995 -9.690 3.641 3.615 16.893 -8.211 23.199 11 AA_U11G12:C57G58_BB A 11 ? B 58 ? A 12 ? B 57 ? 1 A G 12 1_555 B C 22 1_555 A A 14 1_555 B A 21 1_555 -0.592 -1.461 6.045 19.127 -3.374 56.335 -1.160 2.390 5.667 -3.461 -19.624 59.328 12 AA_G12A14:A56C57_BB A 12 ? B 57 ? A 14 ? B 56 ? 1 A A 14 1_555 B A 21 1_555 A G 15 1_555 B C 20 1_555 -0.439 -2.028 4.870 9.827 15.180 27.234 -7.110 3.046 3.029 28.587 -18.507 32.596 13 AA_A14G15:C55A56_BB A 14 ? B 56 ? A 15 ? B 55 ? 1 A G 15 1_555 B C 20 1_555 A C 16 1_555 B G 19 1_555 -0.307 -0.734 2.644 -4.877 12.091 31.901 -2.708 -0.073 2.248 20.939 8.446 34.398 14 AA_G15C16:G54C55_BB A 15 ? B 55 ? A 16 ? B 54 ? 1 A C 16 1_555 B G 19 1_555 A G 17 1_555 B C 18 1_555 -0.178 -0.918 3.093 2.784 14.068 28.561 -3.931 0.771 2.365 26.509 -5.246 31.892 15 AA_C16G17:C53G54_BB A 16 ? B 54 ? A 17 ? B 53 ? 1 A G 17 1_555 B C 18 1_555 A C 18 1_555 B G 17 1_555 -0.011 -0.860 2.845 -0.133 8.558 28.978 -3.102 -0.001 2.495 16.649 0.259 30.190 16 AA_G17C18:G52C53_BB A 17 ? B 53 ? A 18 ? B 52 ? 1 A C 18 1_555 B G 17 1_555 A G 19 1_555 B C 16 1_555 0.162 -0.913 3.083 -2.843 14.154 28.588 -3.916 -0.749 2.355 26.625 5.348 31.958 17 AA_C18G19:C51G52_BB A 18 ? B 52 ? A 19 ? B 51 ? 1 A G 19 1_555 B C 16 1_555 A C 20 1_555 B G 15 1_555 0.287 -0.744 2.655 4.531 11.995 32.047 -2.712 0.065 2.259 20.721 -7.828 34.455 18 AA_G19C20:G50C51_BB A 19 ? B 51 ? A 20 ? B 50 ? 1 A C 20 1_555 B G 15 1_555 A A 21 1_555 B A 14 1_555 0.449 -2.046 4.884 -9.818 14.794 27.151 -7.146 -3.112 3.064 28.030 18.603 32.350 19 AA_C20A21:A49G50_BB A 20 ? B 50 ? A 21 ? B 49 ? 1 A A 21 1_555 B A 14 1_555 A C 22 1_555 B G 12 1_555 0.539 -1.472 6.042 -19.295 -3.196 56.273 -1.188 -2.355 5.671 -3.281 19.806 59.311 20 AA_A21C22:G47A49_BB A 21 ? B 49 ? A 22 ? B 47 ? 1 A C 22 1_555 B G 12 1_555 A G 23 1_555 B U 11 1_555 0.865 -2.673 4.762 -3.293 6.709 22.096 -9.648 -3.628 3.636 16.895 8.293 23.311 21 AA_C22G23:U46G47_BB A 22 ? B 47 ? A 23 ? B 46 ? 1 A G 23 1_555 B U 11 1_555 A G 24 1_555 B C 10 1_555 -0.276 -1.251 3.194 -1.825 7.825 38.923 -2.700 0.206 2.908 11.593 2.704 39.712 22 AA_G23G24:C45U46_BB A 23 ? B 46 ? A 24 ? B 45 ? 1 A G 24 1_555 B C 10 1_555 A C 25 1_555 B G 9 1_555 -0.018 -1.504 3.151 0.021 10.360 34.101 -3.816 0.033 2.598 17.181 -0.036 35.595 23 AA_G24C25:G44C45_BB A 24 ? B 45 ? A 25 ? B 44 ? 1 A C 25 1_555 B G 9 1_555 A A 26 1_555 B U 8 1_555 -0.016 -1.376 3.988 3.594 -1.640 29.969 -2.230 0.928 4.027 -3.154 -6.911 30.223 24 AA_C25A26:U43G44_BB A 25 ? B 44 ? A 26 ? B 43 ? 1 A A 26 1_555 B U 8 1_555 A A 27 1_555 B U 7 1_555 0.059 -1.482 3.553 0.881 5.412 28.154 -4.268 0.088 3.218 10.993 -1.790 28.672 25 AA_A26A27:U42U43_BB A 26 ? B 43 ? A 27 ? B 42 ? 1 A A 27 1_555 B U 7 1_555 A G 28 1_555 B C 6 1_555 0.729 -2.067 3.808 0.019 16.379 31.338 -5.889 -1.200 2.460 28.051 -0.032 35.265 26 AA_A27G28:C41U42_BB A 27 ? B 42 ? A 28 ? B 41 ? 1 A G 28 1_555 B C 6 1_555 A A 29 1_555 B G 5 1_555 -0.995 -2.281 3.159 -7.246 10.365 31.504 -5.405 0.665 2.470 18.199 12.722 33.888 27 AA_G28A29:G40C41_BB A 28 ? B 41 ? A 29 ? B 40 ? 1 A A 29 1_555 B G 5 1_555 A C 32 1_555 B G 4 1_555 -0.711 -4.553 4.575 31.948 -18.465 26.049 -3.095 5.890 4.042 -28.003 -48.451 44.905 28 AA_A29C32:G39G40_BB A 29 ? B 40 ? A 32 ? B 39 ? 1 A C 32 1_555 B G 4 1_555 A G 33 1_555 B C 3 1_555 0.561 -1.723 4.764 0.668 21.469 41.098 -4.675 -0.638 3.507 28.371 -0.882 46.156 29 AA_C32G33:C38G39_BB A 32 ? B 39 ? A 33 ? B 38 ? 1 A G 33 1_555 B C 3 1_555 A U 34 1_555 B A 2 1_555 -0.361 -1.867 3.093 7.460 5.341 31.371 -4.144 1.790 2.597 9.623 -13.440 32.653 30 AA_G33U34:A37C38_BB A 33 ? B 38 ? A 34 ? B 37 ? 1 A U 34 1_555 B A 2 1_555 A C 35 1_555 B G 1 1_555 -0.010 -1.800 3.452 -1.538 22.587 28.541 -5.670 -0.173 1.636 38.989 2.656 36.284 31 AA_U34C35:G36A37_BB A 34 ? B 37 ? A 35 ? B 36 ? #