HEADER CELL ADHESION/TOXIN 14-APR-06 2GOX TITLE CRYSTAL STRUCTURE OF EFB-C / C3D COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT C3; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: FRAGMENT OF ALPHA CHAIN: RESIDUES 996-1287; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: FIBRINOGEN-BINDING PROTEIN; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: C-TERMINAL DOMAIN: RESIDUES 101-165; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT7-; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS MU50; SOURCE 13 ORGANISM_TAXID: 158878; SOURCE 14 STRAIN: MU50 / ATCC 700699; SOURCE 15 GENE: EFB; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PT7HMT KEYWDS PROTEIN-PROTEIN COMPLEX, CELL ADHESION-TOXIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.HAMMEL,B.V.GEISBRECHT REVDAT 8 30-AUG-23 2GOX 1 REMARK REVDAT 7 20-OCT-21 2GOX 1 SEQADV REVDAT 6 18-OCT-17 2GOX 1 REMARK REVDAT 5 13-JUL-11 2GOX 1 VERSN REVDAT 4 24-FEB-09 2GOX 1 VERSN REVDAT 3 18-SEP-07 2GOX 1 REMARK REVDAT 2 04-SEP-07 2GOX 1 ATOM SEQADV DBREF REVDAT 1 20-MAR-07 2GOX 0 JRNL AUTH M.HAMMEL,G.SFYROERA,D.RICKLIN,P.MAGOTTI,J.D.LAMBRIS, JRNL AUTH 2 B.V.GEISBRECHT JRNL TITL A STRUCTURAL BASIS FOR COMPLEMENT INHIBITION BY JRNL TITL 2 STAPHYLOCOCCUS AUREUS. JRNL REF NAT.IMMUNOL. V. 8 430 2007 JRNL REFN ISSN 1529-2908 JRNL PMID 17351618 JRNL DOI 10.1038/NI1450 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 49718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2519 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3180 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5674 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 317 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.97000 REMARK 3 B22 (A**2) : -0.97000 REMARK 3 B33 (A**2) : 1.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.207 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.430 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5780 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7825 ; 1.877 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 720 ; 6.477 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 259 ;38.304 ;25.058 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1027 ;18.533 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;18.584 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 886 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4323 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3165 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4056 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 341 ; 0.176 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.268 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.095 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3733 ; 1.164 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5771 ; 1.867 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2385 ; 2.978 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2054 ; 4.370 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 991 A 1287 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1920 -40.3390 0.4070 REMARK 3 T TENSOR REMARK 3 T11: -0.0101 T22: -0.0672 REMARK 3 T33: 0.0030 T12: -0.0238 REMARK 3 T13: 0.0046 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.4544 L22: 1.1803 REMARK 3 L33: 0.4127 L12: 0.3237 REMARK 3 L13: 0.0579 L23: -0.3352 REMARK 3 S TENSOR REMARK 3 S11: 0.0714 S12: -0.0692 S13: -0.0063 REMARK 3 S21: -0.0138 S22: -0.0801 S23: -0.0786 REMARK 3 S31: -0.0405 S32: -0.0502 S33: 0.0087 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 991 C 1287 REMARK 3 ORIGIN FOR THE GROUP (A): -5.1120 -65.6480 13.3290 REMARK 3 T TENSOR REMARK 3 T11: -0.0663 T22: -0.0095 REMARK 3 T33: -0.0017 T12: -0.0244 REMARK 3 T13: 0.0174 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.2829 L22: 0.4639 REMARK 3 L33: 0.3788 L12: 0.3198 REMARK 3 L13: -0.3561 L23: 0.0529 REMARK 3 S TENSOR REMARK 3 S11: -0.0686 S12: -0.0163 S13: -0.0790 REMARK 3 S21: -0.0689 S22: 0.0663 S23: -0.0085 REMARK 3 S31: -0.0547 S32: -0.0427 S33: 0.0023 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 101 B 165 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3790 -37.5390 24.1960 REMARK 3 T TENSOR REMARK 3 T11: 0.1234 T22: -0.0412 REMARK 3 T33: -0.0297 T12: -0.1891 REMARK 3 T13: -0.1484 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 8.2804 L22: 1.0356 REMARK 3 L33: 1.2715 L12: 1.8502 REMARK 3 L13: 0.6657 L23: 0.4528 REMARK 3 S TENSOR REMARK 3 S11: 0.3709 S12: -0.5631 S13: 0.0632 REMARK 3 S21: 0.4694 S22: -0.3266 S23: -0.5110 REMARK 3 S31: -0.1512 S32: -0.2083 S33: -0.0443 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 101 D 165 REMARK 3 ORIGIN FOR THE GROUP (A): -7.9280 -75.6720 -10.3790 REMARK 3 T TENSOR REMARK 3 T11: -0.0175 T22: 0.1045 REMARK 3 T33: -0.0398 T12: -0.1668 REMARK 3 T13: 0.0294 T23: -0.1349 REMARK 3 L TENSOR REMARK 3 L11: 1.4984 L22: 6.3736 REMARK 3 L33: 1.4692 L12: 1.5736 REMARK 3 L13: 1.1477 L23: 0.8523 REMARK 3 S TENSOR REMARK 3 S11: -0.2246 S12: 0.4230 S13: -0.5442 REMARK 3 S21: -0.5034 S22: 0.3171 S23: 0.0230 REMARK 3 S31: -0.2350 S32: -0.1426 S33: -0.0925 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GOX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037379. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 93.0 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49761 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.53200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1C3D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60% TACSIMATE PH 7.4, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.12100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.56050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.68150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A1035 CG CD OE1 OE2 REMARK 470 LYS A1036 CG CD CE NZ REMARK 470 LYS B 123 CG CD CE NZ REMARK 470 PHE B 142 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 ARG B 165 CG CD NE CZ NH1 NH2 REMARK 470 GLU C1035 CG CD OE1 OE2 REMARK 470 LYS C1036 CG CD CE NZ REMARK 470 ARG D 119 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 123 CG CD CE NZ REMARK 470 PHE D 142 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS D 160 CG CD CE NZ REMARK 470 ARG D 165 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 4 O HOH C 316 1.84 REMARK 500 OE1 GLN C 1152 O HOH C 247 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 145 CD LYS B 145 CE 0.173 REMARK 500 LYS B 145 CE LYS B 145 NZ 0.158 REMARK 500 GLU C1153 CB GLU C1153 CG 0.114 REMARK 500 GLU C1221 CG GLU C1221 CD 0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A1037 -29.17 -176.68 REMARK 500 LEU A1039 -39.16 -35.71 REMARK 500 SER A1064 -4.36 77.31 REMARK 500 GLU B 122 -34.00 -36.68 REMARK 500 LYS B 145 -39.44 -23.88 REMARK 500 ALA C1010 -148.70 -91.58 REMARK 500 LYS C1036 -98.78 -62.18 REMARK 500 PHE C1037 -60.53 -14.24 REMARK 500 LEU C1039 -29.83 -36.32 REMARK 500 SER C1064 -6.56 73.47 REMARK 500 GLU C1138 32.83 71.20 REMARK 500 LYS C1217 16.92 58.60 REMARK 500 ASP D 102 -41.50 -150.75 REMARK 500 LYS D 145 -40.91 -29.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GOM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EFB-C FROM STAPHYLOCOCCUS AUREUS: THE APO FORM REMARK 900 OF THE BACTERIAL COMPONENT FOUND IN THE CURRENT COMPLEX REMARK 900 RELATED ID: 2NOJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EHP/C3D COMPLEX DBREF 2GOX A 996 1287 UNP P01024 CO3_HUMAN 996 1287 DBREF 2GOX C 996 1287 UNP P01024 CO3_HUMAN 996 1287 DBREF 2GOX B 101 165 UNP P68799 FIB_STAAM 101 165 DBREF 2GOX D 101 165 UNP P68799 FIB_STAAM 101 165 SEQADV 2GOX GLY A 991 UNP P01024 EXPRESSION TAG SEQADV 2GOX SER A 992 UNP P01024 EXPRESSION TAG SEQADV 2GOX ARG A 993 UNP P01024 EXPRESSION TAG SEQADV 2GOX SER A 994 UNP P01024 EXPRESSION TAG SEQADV 2GOX THR A 995 UNP P01024 EXPRESSION TAG SEQADV 2GOX ALA A 1010 UNP P01024 CYS 1010 ENGINEERED MUTATION SEQADV 2GOX GLY C 991 UNP P01024 EXPRESSION TAG SEQADV 2GOX SER C 992 UNP P01024 EXPRESSION TAG SEQADV 2GOX ARG C 993 UNP P01024 EXPRESSION TAG SEQADV 2GOX SER C 994 UNP P01024 EXPRESSION TAG SEQADV 2GOX THR C 995 UNP P01024 EXPRESSION TAG SEQADV 2GOX ALA C 1010 UNP P01024 CYS 1010 ENGINEERED MUTATION SEQRES 1 A 297 GLY SER ARG SER THR ASP ALA GLU ARG LEU LYS HIS LEU SEQRES 2 A 297 ILE VAL THR PRO SER GLY ALA GLY GLU GLN ASN MET ILE SEQRES 3 A 297 GLY MET THR PRO THR VAL ILE ALA VAL HIS TYR LEU ASP SEQRES 4 A 297 GLU THR GLU GLN TRP GLU LYS PHE GLY LEU GLU LYS ARG SEQRES 5 A 297 GLN GLY ALA LEU GLU LEU ILE LYS LYS GLY TYR THR GLN SEQRES 6 A 297 GLN LEU ALA PHE ARG GLN PRO SER SER ALA PHE ALA ALA SEQRES 7 A 297 PHE VAL LYS ARG ALA PRO SER THR TRP LEU THR ALA TYR SEQRES 8 A 297 VAL VAL LYS VAL PHE SER LEU ALA VAL ASN LEU ILE ALA SEQRES 9 A 297 ILE ASP SER GLN VAL LEU CYS GLY ALA VAL LYS TRP LEU SEQRES 10 A 297 ILE LEU GLU LYS GLN LYS PRO ASP GLY VAL PHE GLN GLU SEQRES 11 A 297 ASP ALA PRO VAL ILE HIS GLN GLU MET ILE GLY GLY LEU SEQRES 12 A 297 ARG ASN ASN ASN GLU LYS ASP MET ALA LEU THR ALA PHE SEQRES 13 A 297 VAL LEU ILE SER LEU GLN GLU ALA LYS ASP ILE CYS GLU SEQRES 14 A 297 GLU GLN VAL ASN SER LEU PRO GLY SER ILE THR LYS ALA SEQRES 15 A 297 GLY ASP PHE LEU GLU ALA ASN TYR MET ASN LEU GLN ARG SEQRES 16 A 297 SER TYR THR VAL ALA ILE ALA GLY TYR ALA LEU ALA GLN SEQRES 17 A 297 MET GLY ARG LEU LYS GLY PRO LEU LEU ASN LYS PHE LEU SEQRES 18 A 297 THR THR ALA LYS ASP LYS ASN ARG TRP GLU ASP PRO GLY SEQRES 19 A 297 LYS GLN LEU TYR ASN VAL GLU ALA THR SER TYR ALA LEU SEQRES 20 A 297 LEU ALA LEU LEU GLN LEU LYS ASP PHE ASP PHE VAL PRO SEQRES 21 A 297 PRO VAL VAL ARG TRP LEU ASN GLU GLN ARG TYR TYR GLY SEQRES 22 A 297 GLY GLY TYR GLY SER THR GLN ALA THR PHE MET VAL PHE SEQRES 23 A 297 GLN ALA LEU ALA GLN TYR GLN LYS ASP ALA PRO SEQRES 1 B 65 THR ASP ALA THR ILE LYS LYS GLU GLN LYS LEU ILE GLN SEQRES 2 B 65 ALA GLN ASN LEU VAL ARG GLU PHE GLU LYS THR HIS THR SEQRES 3 B 65 VAL SER ALA HIS ARG LYS ALA GLN LYS ALA VAL ASN LEU SEQRES 4 B 65 VAL SER PHE GLU TYR LYS VAL LYS LYS MET VAL LEU GLN SEQRES 5 B 65 GLU ARG ILE ASP ASN VAL LEU LYS GLN GLY LEU VAL ARG SEQRES 1 C 297 GLY SER ARG SER THR ASP ALA GLU ARG LEU LYS HIS LEU SEQRES 2 C 297 ILE VAL THR PRO SER GLY ALA GLY GLU GLN ASN MET ILE SEQRES 3 C 297 GLY MET THR PRO THR VAL ILE ALA VAL HIS TYR LEU ASP SEQRES 4 C 297 GLU THR GLU GLN TRP GLU LYS PHE GLY LEU GLU LYS ARG SEQRES 5 C 297 GLN GLY ALA LEU GLU LEU ILE LYS LYS GLY TYR THR GLN SEQRES 6 C 297 GLN LEU ALA PHE ARG GLN PRO SER SER ALA PHE ALA ALA SEQRES 7 C 297 PHE VAL LYS ARG ALA PRO SER THR TRP LEU THR ALA TYR SEQRES 8 C 297 VAL VAL LYS VAL PHE SER LEU ALA VAL ASN LEU ILE ALA SEQRES 9 C 297 ILE ASP SER GLN VAL LEU CYS GLY ALA VAL LYS TRP LEU SEQRES 10 C 297 ILE LEU GLU LYS GLN LYS PRO ASP GLY VAL PHE GLN GLU SEQRES 11 C 297 ASP ALA PRO VAL ILE HIS GLN GLU MET ILE GLY GLY LEU SEQRES 12 C 297 ARG ASN ASN ASN GLU LYS ASP MET ALA LEU THR ALA PHE SEQRES 13 C 297 VAL LEU ILE SER LEU GLN GLU ALA LYS ASP ILE CYS GLU SEQRES 14 C 297 GLU GLN VAL ASN SER LEU PRO GLY SER ILE THR LYS ALA SEQRES 15 C 297 GLY ASP PHE LEU GLU ALA ASN TYR MET ASN LEU GLN ARG SEQRES 16 C 297 SER TYR THR VAL ALA ILE ALA GLY TYR ALA LEU ALA GLN SEQRES 17 C 297 MET GLY ARG LEU LYS GLY PRO LEU LEU ASN LYS PHE LEU SEQRES 18 C 297 THR THR ALA LYS ASP LYS ASN ARG TRP GLU ASP PRO GLY SEQRES 19 C 297 LYS GLN LEU TYR ASN VAL GLU ALA THR SER TYR ALA LEU SEQRES 20 C 297 LEU ALA LEU LEU GLN LEU LYS ASP PHE ASP PHE VAL PRO SEQRES 21 C 297 PRO VAL VAL ARG TRP LEU ASN GLU GLN ARG TYR TYR GLY SEQRES 22 C 297 GLY GLY TYR GLY SER THR GLN ALA THR PHE MET VAL PHE SEQRES 23 C 297 GLN ALA LEU ALA GLN TYR GLN LYS ASP ALA PRO SEQRES 1 D 65 THR ASP ALA THR ILE LYS LYS GLU GLN LYS LEU ILE GLN SEQRES 2 D 65 ALA GLN ASN LEU VAL ARG GLU PHE GLU LYS THR HIS THR SEQRES 3 D 65 VAL SER ALA HIS ARG LYS ALA GLN LYS ALA VAL ASN LEU SEQRES 4 D 65 VAL SER PHE GLU TYR LYS VAL LYS LYS MET VAL LEU GLN SEQRES 5 D 65 GLU ARG ILE ASP ASN VAL LEU LYS GLN GLY LEU VAL ARG FORMUL 5 HOH *317(H2 O) HELIX 1 15 THR B 101 HIS B 125 1 25 HELIX 2 16 THR B 126 VAL B 140 1 15 HELIX 3 17 SER B 141 GLU B 143 5 3 HELIX 4 18 TYR B 144 GLY B 162 1 19 HELIX 5 36 ASP D 102 HIS D 125 1 24 HELIX 6 37 THR D 126 VAL D 140 1 15 HELIX 7 38 SER D 141 GLU D 143 5 3 HELIX 8 39 TYR D 144 GLY D 162 1 19 SSBOND 1 CYS A 1101 CYS A 1158 1555 1555 2.06 SSBOND 2 CYS C 1101 CYS C 1158 1555 1555 2.04 CRYST1 90.939 90.939 122.242 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010996 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010996 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008180 0.00000