HEADER SIGNALING PROTEIN 21-APR-06 2GQI TITLE SOLUTION STRUCTURE OF THE SH3 DOMAIN OF HUMAN RAS GTPASE-ACTIVATING TITLE 2 PROTEIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS GTPASE-ACTIVATING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 SYNONYM: GTPASE-ACTIVATING PROTEIN, GAP, RAS P21 PROTEIN ACTIVATOR, COMPND 6 P120GAP, RASGAP; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RASA1, RASA; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050711-04; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS GTPASE-ACTIVATING PROTEIN, GAP, RAS P21 PROTEIN ACTIVATOR, P120GAP, KEYWDS 2 RASGAP, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.KUROSAKI,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2GQI 1 REMARK SEQADV REVDAT 2 24-FEB-09 2GQI 1 VERSN REVDAT 1 21-OCT-06 2GQI 0 JRNL AUTH C.KUROSAKI,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SH3 DOMAIN OF HUMAN RAS JRNL TITL 2 GTPASE-ACTIVATING PROTEIN 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DELTA NMR 4.3.2, CYANA 2.0.17 REMARK 3 AUTHORS : JEOL (DELTA NMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GQI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037430. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.17MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL (PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3, 10% REMARK 210 D2O; 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : ECA REMARK 210 SPECTROMETER MANUFACTURER : JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.934, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SPECTROMETER_ID 1 FOR 3D_15N-SEPARATED_NOESY; REMARK 210 SPECTROMETER_ID 2 FOR 3D_13C-SEPARATED_NOESY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 18 151.62 -36.64 REMARK 500 1 ASP A 21 51.17 72.77 REMARK 500 1 GLU A 24 152.59 -37.81 REMARK 500 2 LYS A 18 169.43 -46.28 REMARK 500 2 LYS A 29 105.78 -51.09 REMARK 500 3 ALA A 12 95.33 -69.09 REMARK 500 3 LYS A 29 104.32 -59.82 REMARK 500 3 ASN A 48 139.97 -37.75 REMARK 500 4 LYS A 18 146.77 -35.18 REMARK 500 4 ASP A 21 40.72 73.98 REMARK 500 4 GLU A 24 139.37 -34.63 REMARK 500 4 TRP A 45 98.97 -59.83 REMARK 500 5 SER A 2 49.48 37.86 REMARK 500 5 LYS A 18 155.45 -40.52 REMARK 500 5 TRP A 45 93.14 -62.10 REMARK 500 5 ASN A 48 150.52 -47.13 REMARK 500 6 LYS A 29 136.32 -38.53 REMARK 500 6 ASP A 31 125.12 -34.52 REMARK 500 6 TRP A 45 89.99 -69.86 REMARK 500 6 PRO A 68 1.38 -69.79 REMARK 500 6 SER A 70 116.08 -35.14 REMARK 500 7 SER A 2 85.10 -64.22 REMARK 500 7 SER A 5 102.27 -59.07 REMARK 500 7 LYS A 18 162.91 -48.84 REMARK 500 7 VAL A 35 109.82 -59.40 REMARK 500 7 TRP A 45 86.31 -64.71 REMARK 500 8 SER A 2 42.23 35.79 REMARK 500 8 ARG A 8 155.07 -41.73 REMARK 500 8 LYS A 18 156.11 -43.50 REMARK 500 8 ASP A 21 40.08 70.50 REMARK 500 8 TRP A 45 91.50 -59.30 REMARK 500 8 PRO A 68 0.18 -69.75 REMARK 500 9 SER A 3 109.53 -58.27 REMARK 500 9 VAL A 35 100.35 -52.96 REMARK 500 9 TRP A 45 96.32 -67.30 REMARK 500 9 PRO A 68 1.17 -69.82 REMARK 500 9 SER A 70 107.87 -35.97 REMARK 500 10 LYS A 18 154.12 -37.42 REMARK 500 11 LYS A 18 151.85 -39.79 REMARK 500 11 ASP A 21 51.23 71.71 REMARK 500 11 GLU A 24 147.52 -37.25 REMARK 500 11 VAL A 35 109.90 -50.66 REMARK 500 11 TRP A 45 93.92 -63.81 REMARK 500 12 ARG A 8 121.56 -37.43 REMARK 500 12 TRP A 45 89.02 -68.53 REMARK 500 12 PRO A 68 94.93 -69.75 REMARK 500 13 SER A 3 146.79 -37.07 REMARK 500 13 ALA A 12 94.80 -67.69 REMARK 500 13 ASP A 21 45.97 72.62 REMARK 500 13 VAL A 35 117.09 -39.95 REMARK 500 REMARK 500 THIS ENTRY HAS 82 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2GQI A 8 65 UNP P20936 RASA1_HUMAN 282 339 SEQADV 2GQI GLY A 1 UNP P20936 CLONING ARTIFACT SEQADV 2GQI SER A 2 UNP P20936 CLONING ARTIFACT SEQADV 2GQI SER A 3 UNP P20936 CLONING ARTIFACT SEQADV 2GQI GLY A 4 UNP P20936 CLONING ARTIFACT SEQADV 2GQI SER A 5 UNP P20936 CLONING ARTIFACT SEQADV 2GQI SER A 6 UNP P20936 CLONING ARTIFACT SEQADV 2GQI GLY A 7 UNP P20936 CLONING ARTIFACT SEQADV 2GQI SER A 66 UNP P20936 CLONING ARTIFACT SEQADV 2GQI GLY A 67 UNP P20936 CLONING ARTIFACT SEQADV 2GQI PRO A 68 UNP P20936 CLONING ARTIFACT SEQADV 2GQI SER A 69 UNP P20936 CLONING ARTIFACT SEQADV 2GQI SER A 70 UNP P20936 CLONING ARTIFACT SEQADV 2GQI GLY A 71 UNP P20936 CLONING ARTIFACT SEQRES 1 A 71 GLY SER SER GLY SER SER GLY ARG ARG VAL ARG ALA ILE SEQRES 2 A 71 LEU PRO TYR THR LYS VAL PRO ASP THR ASP GLU ILE SER SEQRES 3 A 71 PHE LEU LYS GLY ASP MET PHE ILE VAL HIS ASN GLU LEU SEQRES 4 A 71 GLU ASP GLY TRP MET TRP VAL THR ASN LEU ARG THR ASP SEQRES 5 A 71 GLU GLN GLY LEU ILE VAL GLU ASP LEU VAL GLU GLU VAL SEQRES 6 A 71 SER GLY PRO SER SER GLY SHEET 1 A 2 VAL A 10 ALA A 12 0 SHEET 2 A 2 VAL A 62 GLU A 64 -1 O GLU A 63 N ARG A 11 SHEET 1 B 3 ASN A 37 GLU A 38 0 SHEET 2 B 3 MET A 44 THR A 47 -1 O TRP A 45 N ASN A 37 SHEET 3 B 3 GLN A 54 ILE A 57 -1 O GLY A 55 N VAL A 46 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1