data_2GUP # _entry.id 2GUP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2GUP RCSB RCSB037572 WWPDB D_1000037572 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC80695 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2GUP _pdbx_database_status.recvd_initial_deposition_date 2006-05-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tan, K.' 1 'Li, H.' 2 'Abdullah, J.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'The crystal structure of a ROK family protein from Streptococcus pneumoniae TIGR4 in complex with sucrose' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tan, K.' 1 ? primary 'Li, H.' 2 ? primary 'Abdullah, J.' 3 ? primary 'Joachimiak, A.' 4 ? # _cell.entry_id 2GUP _cell.length_a 54.678 _cell.length_b 114.665 _cell.length_c 117.677 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2GUP _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ROK family protein' 31998.877 1 ? ? ? ? 2 branched man 'beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose' 342.297 3 ? ? ? ? 3 non-polymer syn 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 122.143 1 ? ? ? ? 4 water nat water 18.015 84 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name sucrose # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)TIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIA(MSE)SVPGAVNQETGV IDGFSAVPYIHGFSWYEALSSYQLPVHLENDANCVGLSELLAHPELENAACVVIGTGIGGA(MSE)IINGRLHRGRHGLG GEFGY(MSE)TTLAPAEKLNNWSQLASTGN(MSE)VRYVIEKSGHTDWDGRKIYQEAAAGNILCQEAIER(MSE)NRNLA QGLLNIQYLIDPGVISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEKQW ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMTIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVP YIHGFSWYEALSSYQLPVHLENDANCVGLSELLAHPELENAACVVIGTGIGGAMIINGRLHRGRHGLGGEFGYMTTLAPA EKLNNWSQLASTGNMVRYVIEKSGHTDWDGRKIYQEAAAGNILCQEAIERMNRNLAQGLLNIQYLIDPGVISLGGSISQN PDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEKQW ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC80695 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 THR n 1 6 ILE n 1 7 ALA n 1 8 THR n 1 9 ILE n 1 10 ASP n 1 11 ILE n 1 12 GLY n 1 13 GLY n 1 14 THR n 1 15 GLY n 1 16 ILE n 1 17 LYS n 1 18 PHE n 1 19 ALA n 1 20 SER n 1 21 LEU n 1 22 THR n 1 23 PRO n 1 24 ASP n 1 25 GLY n 1 26 LYS n 1 27 ILE n 1 28 LEU n 1 29 ASP n 1 30 LYS n 1 31 THR n 1 32 SER n 1 33 ILE n 1 34 SER n 1 35 THR n 1 36 PRO n 1 37 GLU n 1 38 ASN n 1 39 LEU n 1 40 GLU n 1 41 ASP n 1 42 LEU n 1 43 LEU n 1 44 ALA n 1 45 TRP n 1 46 LEU n 1 47 ASP n 1 48 GLN n 1 49 ARG n 1 50 LEU n 1 51 SER n 1 52 GLU n 1 53 GLN n 1 54 ASP n 1 55 TYR n 1 56 SER n 1 57 GLY n 1 58 ILE n 1 59 ALA n 1 60 MSE n 1 61 SER n 1 62 VAL n 1 63 PRO n 1 64 GLY n 1 65 ALA n 1 66 VAL n 1 67 ASN n 1 68 GLN n 1 69 GLU n 1 70 THR n 1 71 GLY n 1 72 VAL n 1 73 ILE n 1 74 ASP n 1 75 GLY n 1 76 PHE n 1 77 SER n 1 78 ALA n 1 79 VAL n 1 80 PRO n 1 81 TYR n 1 82 ILE n 1 83 HIS n 1 84 GLY n 1 85 PHE n 1 86 SER n 1 87 TRP n 1 88 TYR n 1 89 GLU n 1 90 ALA n 1 91 LEU n 1 92 SER n 1 93 SER n 1 94 TYR n 1 95 GLN n 1 96 LEU n 1 97 PRO n 1 98 VAL n 1 99 HIS n 1 100 LEU n 1 101 GLU n 1 102 ASN n 1 103 ASP n 1 104 ALA n 1 105 ASN n 1 106 CYS n 1 107 VAL n 1 108 GLY n 1 109 LEU n 1 110 SER n 1 111 GLU n 1 112 LEU n 1 113 LEU n 1 114 ALA n 1 115 HIS n 1 116 PRO n 1 117 GLU n 1 118 LEU n 1 119 GLU n 1 120 ASN n 1 121 ALA n 1 122 ALA n 1 123 CYS n 1 124 VAL n 1 125 VAL n 1 126 ILE n 1 127 GLY n 1 128 THR n 1 129 GLY n 1 130 ILE n 1 131 GLY n 1 132 GLY n 1 133 ALA n 1 134 MSE n 1 135 ILE n 1 136 ILE n 1 137 ASN n 1 138 GLY n 1 139 ARG n 1 140 LEU n 1 141 HIS n 1 142 ARG n 1 143 GLY n 1 144 ARG n 1 145 HIS n 1 146 GLY n 1 147 LEU n 1 148 GLY n 1 149 GLY n 1 150 GLU n 1 151 PHE n 1 152 GLY n 1 153 TYR n 1 154 MSE n 1 155 THR n 1 156 THR n 1 157 LEU n 1 158 ALA n 1 159 PRO n 1 160 ALA n 1 161 GLU n 1 162 LYS n 1 163 LEU n 1 164 ASN n 1 165 ASN n 1 166 TRP n 1 167 SER n 1 168 GLN n 1 169 LEU n 1 170 ALA n 1 171 SER n 1 172 THR n 1 173 GLY n 1 174 ASN n 1 175 MSE n 1 176 VAL n 1 177 ARG n 1 178 TYR n 1 179 VAL n 1 180 ILE n 1 181 GLU n 1 182 LYS n 1 183 SER n 1 184 GLY n 1 185 HIS n 1 186 THR n 1 187 ASP n 1 188 TRP n 1 189 ASP n 1 190 GLY n 1 191 ARG n 1 192 LYS n 1 193 ILE n 1 194 TYR n 1 195 GLN n 1 196 GLU n 1 197 ALA n 1 198 ALA n 1 199 ALA n 1 200 GLY n 1 201 ASN n 1 202 ILE n 1 203 LEU n 1 204 CYS n 1 205 GLN n 1 206 GLU n 1 207 ALA n 1 208 ILE n 1 209 GLU n 1 210 ARG n 1 211 MSE n 1 212 ASN n 1 213 ARG n 1 214 ASN n 1 215 LEU n 1 216 ALA n 1 217 GLN n 1 218 GLY n 1 219 LEU n 1 220 LEU n 1 221 ASN n 1 222 ILE n 1 223 GLN n 1 224 TYR n 1 225 LEU n 1 226 ILE n 1 227 ASP n 1 228 PRO n 1 229 GLY n 1 230 VAL n 1 231 ILE n 1 232 SER n 1 233 LEU n 1 234 GLY n 1 235 GLY n 1 236 SER n 1 237 ILE n 1 238 SER n 1 239 GLN n 1 240 ASN n 1 241 PRO n 1 242 ASP n 1 243 PHE n 1 244 ILE n 1 245 GLN n 1 246 GLY n 1 247 VAL n 1 248 LYS n 1 249 LYS n 1 250 ALA n 1 251 VAL n 1 252 GLU n 1 253 ASP n 1 254 PHE n 1 255 VAL n 1 256 ASP n 1 257 ALA n 1 258 TYR n 1 259 GLU n 1 260 GLU n 1 261 TYR n 1 262 THR n 1 263 VAL n 1 264 ALA n 1 265 PRO n 1 266 VAL n 1 267 ILE n 1 268 GLN n 1 269 ALA n 1 270 CYS n 1 271 THR n 1 272 TYR n 1 273 HIS n 1 274 ALA n 1 275 ASP n 1 276 ALA n 1 277 ASN n 1 278 LEU n 1 279 TYR n 1 280 GLY n 1 281 ALA n 1 282 LEU n 1 283 VAL n 1 284 ASN n 1 285 TRP n 1 286 LEU n 1 287 GLN n 1 288 GLU n 1 289 GLU n 1 290 LYS n 1 291 GLN n 1 292 TRP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Streptococcus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Streptococcus pneumoniae' _entity_src_gen.gene_src_strain TIGR4 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus pneumoniae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 170187 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code AAK76199 _struct_ref.pdbx_db_accession 14973654 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVPYIH GFSWYEALSSYQLPVHLENDANCVGLSELLAHPELENAACVVIGTGIGGAMIINGRLHRGRHGLGGEFGYMTTLAPAEKL NNWSQLASTGNMVRYVIEKSGHTDWDGRKIYQEAAAGNILCQEAIERMNRNLAQGLLNIQYLIDPGVISLGGSISQNPDF IQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEKQW ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2GUP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 292 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 14973654 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 289 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 289 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2GUP SER A 1 ? GB 14973654 ? ? 'cloning artifact' -2 1 1 2GUP ASN A 2 ? GB 14973654 ? ? 'cloning artifact' -1 2 1 2GUP ALA A 3 ? GB 14973654 ? ? 'cloning artifact' 0 3 1 2GUP MSE A 4 ? GB 14973654 MET 1 'modified residue' 1 4 1 2GUP MSE A 60 ? GB 14973654 MET 57 'modified residue' 57 5 1 2GUP MSE A 134 ? GB 14973654 MET 131 'modified residue' 131 6 1 2GUP MSE A 154 ? GB 14973654 MET 151 'modified residue' 151 7 1 2GUP MSE A 175 ? GB 14973654 MET 172 'modified residue' 172 8 1 2GUP MSE A 211 ? GB 14973654 MET 208 'modified residue' 208 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FRU 'D-saccharide, beta linking' . beta-D-fructofuranose ? 'C6 H12 O6' 180.156 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TRS non-polymer . 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 'TRIS BUFFER' 'C4 H12 N O3 1' 122.143 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2GUP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.88 _exptl_crystal.density_percent_sol 57.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '20% (W/V) PEG-8000, 0.1M MgCl2, 0.1M TRIS, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-03-06 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol SAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97929 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97929 # _reflns.entry_id 2GUP _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 19.51 _reflns.d_resolution_high 2.01 _reflns.number_obs 23027 _reflns.number_all 23027 _reflns.percent_possible_obs 92.0 _reflns.pdbx_Rmerge_I_obs 0.1 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 27.14 _reflns.B_iso_Wilson_estimate 32.21 _reflns.pdbx_redundancy 6.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.01 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 70.9 _reflns_shell.Rmerge_I_obs 0.511 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.05 _reflns_shell.pdbx_redundancy 5.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1748 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2GUP _refine.ls_number_reflns_obs 21779 _refine.ls_number_reflns_all 21779 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.51 _refine.ls_d_res_high 2.01 _refine.ls_percent_reflns_obs 91.76 _refine.ls_R_factor_obs 0.18689 _refine.ls_R_factor_all 0.18689 _refine.ls_R_factor_R_work 0.18464 _refine.ls_R_factor_R_free 0.22823 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1178 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.948 _refine.B_iso_mean 41.353 _refine.aniso_B[1][1] 0.02 _refine.aniso_B[2][2] -0.01 _refine.aniso_B[3][3] -0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.171 _refine.pdbx_overall_ESU_R_Free 0.159 _refine.overall_SU_ML 0.114 _refine.overall_SU_B 4.143 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2211 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 77 _refine_hist.number_atoms_solvent 84 _refine_hist.number_atoms_total 2372 _refine_hist.d_res_high 2.01 _refine_hist.d_res_low 19.51 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.030 0.022 ? 2336 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.288 1.986 ? 3187 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.924 5.000 ? 288 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.377 25.481 ? 104 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.694 15.000 ? 362 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 27.737 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.158 0.200 ? 365 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.011 0.020 ? 1732 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.223 0.200 ? 974 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.321 0.200 ? 1603 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.187 0.200 ? 115 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.170 0.200 ? 48 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.162 0.200 ? 10 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.713 1.500 ? 1477 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.528 2.000 ? 2282 'X-RAY DIFFRACTION' ? r_scbond_it 4.198 3.000 ? 1009 'X-RAY DIFFRACTION' ? r_scangle_it 5.828 4.500 ? 905 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.010 _refine_ls_shell.d_res_low 2.062 _refine_ls_shell.number_reflns_R_work 1134 _refine_ls_shell.R_factor_R_work 0.261 _refine_ls_shell.percent_reflns_obs 65.28 _refine_ls_shell.R_factor_R_free 0.336 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 56 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1134 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2GUP _struct.title 'Structural Genomics, the crystal structure of a ROK family protein from Streptococcus pneumoniae TIGR4 in complex with sucrose' _struct.pdbx_descriptor 'ROK family protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2GUP _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;sugar kinase, ROK family, Streptococcus pneumoniae TIGR4, APC80695, sucrose, Structural Genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details 'It is a dimer, which can be formed from the two monomers with the symmetry operations of (x,y,z) and (-x,y,1/2-z).' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 38 ? SER A 51 ? ASN A 35 SER A 48 1 ? 14 HELX_P HELX_P2 2 VAL A 79 ? HIS A 83 ? VAL A 76 HIS A 80 5 ? 5 HELX_P HELX_P3 3 SER A 86 ? LEU A 91 ? SER A 83 LEU A 88 1 ? 6 HELX_P HELX_P4 4 SER A 92 ? GLN A 95 ? SER A 89 GLN A 92 5 ? 4 HELX_P HELX_P5 5 ASP A 103 ? HIS A 115 ? ASP A 100 HIS A 112 1 ? 13 HELX_P HELX_P6 6 GLU A 150 ? MSE A 154 ? GLU A 147 MSE A 151 5 ? 5 HELX_P HELX_P7 7 ASN A 165 ? SER A 171 ? ASN A 162 SER A 168 1 ? 7 HELX_P HELX_P8 8 SER A 171 ? GLY A 184 ? SER A 168 GLY A 181 1 ? 14 HELX_P HELX_P9 9 ASP A 189 ? ALA A 199 ? ASP A 186 ALA A 196 1 ? 11 HELX_P HELX_P10 10 ASN A 201 ? ASP A 227 ? ASN A 198 ASP A 224 1 ? 27 HELX_P HELX_P11 11 GLY A 235 ? GLN A 239 ? GLY A 232 GLN A 236 5 ? 5 HELX_P HELX_P12 12 ASN A 240 ? TYR A 258 ? ASN A 237 TYR A 255 1 ? 19 HELX_P HELX_P13 13 ASP A 275 ? GLU A 289 ? ASP A 272 GLU A 286 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 4 C ? ? ? 1_555 A THR 5 N ? ? A MSE 1 A THR 2 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A ALA 59 C ? ? ? 1_555 A MSE 60 N ? ? A ALA 56 A MSE 57 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale3 covale both ? A MSE 60 C ? ? ? 1_555 A SER 61 N ? ? A MSE 57 A SER 58 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale4 covale both ? A ALA 133 C ? ? ? 1_555 A MSE 134 N ? ? A ALA 130 A MSE 131 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale5 covale both ? A MSE 134 C ? ? ? 1_555 A ILE 135 N ? ? A MSE 131 A ILE 132 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale6 covale both ? A TYR 153 C ? ? ? 1_555 A MSE 154 N ? ? A TYR 150 A MSE 151 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale7 covale both ? A MSE 154 C ? ? ? 1_555 A THR 155 N ? ? A MSE 151 A THR 152 1_555 ? ? ? ? ? ? ? 1.310 ? ? covale8 covale both ? A ASN 174 C ? ? ? 1_555 A MSE 175 N ? ? A ASN 171 A MSE 172 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale9 covale both ? A MSE 175 C ? ? ? 1_555 A VAL 176 N ? ? A MSE 172 A VAL 173 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale10 covale both ? A ARG 210 C ? ? ? 1_555 A MSE 211 N ? ? A ARG 207 A MSE 208 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale11 covale both ? A MSE 211 C ? ? ? 1_555 A ASN 212 N ? ? A MSE 208 A ASN 209 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale12 covale both ? B GLC . C1 ? ? ? 1_555 B FRU . O2 ? ? B GLC 1 B FRU 2 1_555 ? ? ? ? ? ? ? 1.456 sing ? covale13 covale both ? C GLC . C1 ? ? ? 1_555 C FRU . O2 ? ? C GLC 1 C FRU 2 1_555 ? ? ? ? ? ? ? 1.439 sing ? covale14 covale both ? D GLC . C1 ? ? ? 1_555 D FRU . O2 ? ? D GLC 1 D FRU 2 1_555 ? ? ? ? ? ? ? 1.425 sing ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 27 ? ILE A 33 ? ILE A 24 ILE A 30 A 2 GLY A 15 ? LEU A 21 ? GLY A 12 LEU A 18 A 3 ILE A 6 ? GLY A 12 ? ILE A 3 GLY A 9 A 4 GLY A 57 ? VAL A 62 ? GLY A 54 VAL A 59 A 5 VAL A 98 ? ASN A 102 ? VAL A 95 ASN A 99 B 1 ALA A 65 ? VAL A 66 ? ALA A 62 VAL A 63 B 2 ILE A 73 ? ASP A 74 ? ILE A 70 ASP A 71 C 1 ARG A 139 ? HIS A 141 ? ARG A 136 HIS A 138 C 2 ILE A 130 ? ILE A 136 ? ILE A 127 ILE A 133 C 3 ALA A 121 ? ILE A 126 ? ALA A 118 ILE A 123 C 4 VAL A 230 ? GLY A 234 ? VAL A 227 GLY A 231 C 5 ILE A 267 ? ALA A 269 ? ILE A 264 ALA A 266 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 28 ? O LEU A 25 N SER A 20 ? N SER A 17 A 2 3 O ALA A 19 ? O ALA A 16 N THR A 8 ? N THR A 5 A 3 4 N ILE A 9 ? N ILE A 6 O SER A 61 ? O SER A 58 A 4 5 N VAL A 62 ? N VAL A 59 O GLU A 101 ? O GLU A 98 B 1 2 N ALA A 65 ? N ALA A 62 O ASP A 74 ? O ASP A 71 C 1 2 O ARG A 139 ? O ARG A 136 N ILE A 136 ? N ILE A 133 C 2 3 O GLY A 131 ? O GLY A 128 N VAL A 125 ? N VAL A 122 C 3 4 N VAL A 124 ? N VAL A 121 O GLY A 234 ? O GLY A 231 C 4 5 N LEU A 233 ? N LEU A 230 O GLN A 268 ? O GLN A 265 # _database_PDB_matrix.entry_id 2GUP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2GUP _atom_sites.fract_transf_matrix[1][1] 0.018289 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008721 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008498 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 THR 5 2 2 THR THR A . n A 1 6 ILE 6 3 3 ILE ILE A . n A 1 7 ALA 7 4 4 ALA ALA A . n A 1 8 THR 8 5 5 THR THR A . n A 1 9 ILE 9 6 6 ILE ILE A . n A 1 10 ASP 10 7 7 ASP ASP A . n A 1 11 ILE 11 8 8 ILE ILE A . n A 1 12 GLY 12 9 9 GLY GLY A . n A 1 13 GLY 13 10 10 GLY GLY A . n A 1 14 THR 14 11 11 THR THR A . n A 1 15 GLY 15 12 12 GLY GLY A . n A 1 16 ILE 16 13 13 ILE ILE A . n A 1 17 LYS 17 14 14 LYS LYS A . n A 1 18 PHE 18 15 15 PHE PHE A . n A 1 19 ALA 19 16 16 ALA ALA A . n A 1 20 SER 20 17 17 SER SER A . n A 1 21 LEU 21 18 18 LEU LEU A . n A 1 22 THR 22 19 19 THR THR A . n A 1 23 PRO 23 20 20 PRO PRO A . n A 1 24 ASP 24 21 21 ASP ASP A . n A 1 25 GLY 25 22 22 GLY GLY A . n A 1 26 LYS 26 23 23 LYS LYS A . n A 1 27 ILE 27 24 24 ILE ILE A . n A 1 28 LEU 28 25 25 LEU LEU A . n A 1 29 ASP 29 26 26 ASP ASP A . n A 1 30 LYS 30 27 27 LYS LYS A . n A 1 31 THR 31 28 28 THR THR A . n A 1 32 SER 32 29 29 SER SER A . n A 1 33 ILE 33 30 30 ILE ILE A . n A 1 34 SER 34 31 31 SER SER A . n A 1 35 THR 35 32 32 THR THR A . n A 1 36 PRO 36 33 33 PRO PRO A . n A 1 37 GLU 37 34 34 GLU GLU A . n A 1 38 ASN 38 35 35 ASN ASN A . n A 1 39 LEU 39 36 36 LEU LEU A . n A 1 40 GLU 40 37 37 GLU GLU A . n A 1 41 ASP 41 38 38 ASP ASP A . n A 1 42 LEU 42 39 39 LEU LEU A . n A 1 43 LEU 43 40 40 LEU LEU A . n A 1 44 ALA 44 41 41 ALA ALA A . n A 1 45 TRP 45 42 42 TRP TRP A . n A 1 46 LEU 46 43 43 LEU LEU A . n A 1 47 ASP 47 44 44 ASP ASP A . n A 1 48 GLN 48 45 45 GLN GLN A . n A 1 49 ARG 49 46 46 ARG ARG A . n A 1 50 LEU 50 47 47 LEU LEU A . n A 1 51 SER 51 48 48 SER SER A . n A 1 52 GLU 52 49 49 GLU GLU A . n A 1 53 GLN 53 50 50 GLN GLN A . n A 1 54 ASP 54 51 51 ASP ASP A . n A 1 55 TYR 55 52 52 TYR TYR A . n A 1 56 SER 56 53 53 SER SER A . n A 1 57 GLY 57 54 54 GLY GLY A . n A 1 58 ILE 58 55 55 ILE ILE A . n A 1 59 ALA 59 56 56 ALA ALA A . n A 1 60 MSE 60 57 57 MSE MSE A . n A 1 61 SER 61 58 58 SER SER A . n A 1 62 VAL 62 59 59 VAL VAL A . n A 1 63 PRO 63 60 60 PRO PRO A . n A 1 64 GLY 64 61 61 GLY GLY A . n A 1 65 ALA 65 62 62 ALA ALA A . n A 1 66 VAL 66 63 63 VAL VAL A . n A 1 67 ASN 67 64 64 ASN ASN A . n A 1 68 GLN 68 65 65 GLN GLN A . n A 1 69 GLU 69 66 66 GLU GLU A . n A 1 70 THR 70 67 67 THR THR A . n A 1 71 GLY 71 68 68 GLY GLY A . n A 1 72 VAL 72 69 69 VAL VAL A . n A 1 73 ILE 73 70 70 ILE ILE A . n A 1 74 ASP 74 71 71 ASP ASP A . n A 1 75 GLY 75 72 72 GLY GLY A . n A 1 76 PHE 76 73 73 PHE PHE A . n A 1 77 SER 77 74 74 SER SER A . n A 1 78 ALA 78 75 75 ALA ALA A . n A 1 79 VAL 79 76 76 VAL VAL A . n A 1 80 PRO 80 77 77 PRO PRO A . n A 1 81 TYR 81 78 78 TYR TYR A . n A 1 82 ILE 82 79 79 ILE ILE A . n A 1 83 HIS 83 80 80 HIS HIS A . n A 1 84 GLY 84 81 81 GLY GLY A . n A 1 85 PHE 85 82 82 PHE PHE A . n A 1 86 SER 86 83 83 SER SER A . n A 1 87 TRP 87 84 84 TRP TRP A . n A 1 88 TYR 88 85 85 TYR TYR A . n A 1 89 GLU 89 86 86 GLU GLU A . n A 1 90 ALA 90 87 87 ALA ALA A . n A 1 91 LEU 91 88 88 LEU LEU A . n A 1 92 SER 92 89 89 SER SER A . n A 1 93 SER 93 90 90 SER SER A . n A 1 94 TYR 94 91 91 TYR TYR A . n A 1 95 GLN 95 92 92 GLN GLN A . n A 1 96 LEU 96 93 93 LEU LEU A . n A 1 97 PRO 97 94 94 PRO PRO A . n A 1 98 VAL 98 95 95 VAL VAL A . n A 1 99 HIS 99 96 96 HIS HIS A . n A 1 100 LEU 100 97 97 LEU LEU A . n A 1 101 GLU 101 98 98 GLU GLU A . n A 1 102 ASN 102 99 99 ASN ASN A . n A 1 103 ASP 103 100 100 ASP ASP A . n A 1 104 ALA 104 101 101 ALA ALA A . n A 1 105 ASN 105 102 102 ASN ASN A . n A 1 106 CYS 106 103 103 CYS CYS A . n A 1 107 VAL 107 104 104 VAL VAL A . n A 1 108 GLY 108 105 105 GLY GLY A . n A 1 109 LEU 109 106 106 LEU LEU A . n A 1 110 SER 110 107 107 SER SER A . n A 1 111 GLU 111 108 108 GLU GLU A . n A 1 112 LEU 112 109 109 LEU LEU A . n A 1 113 LEU 113 110 110 LEU LEU A . n A 1 114 ALA 114 111 111 ALA ALA A . n A 1 115 HIS 115 112 112 HIS HIS A . n A 1 116 PRO 116 113 113 PRO PRO A . n A 1 117 GLU 117 114 114 GLU GLU A . n A 1 118 LEU 118 115 115 LEU LEU A . n A 1 119 GLU 119 116 116 GLU GLU A . n A 1 120 ASN 120 117 117 ASN ASN A . n A 1 121 ALA 121 118 118 ALA ALA A . n A 1 122 ALA 122 119 119 ALA ALA A . n A 1 123 CYS 123 120 120 CYS CYS A . n A 1 124 VAL 124 121 121 VAL VAL A . n A 1 125 VAL 125 122 122 VAL VAL A . n A 1 126 ILE 126 123 123 ILE ILE A . n A 1 127 GLY 127 124 124 GLY GLY A . n A 1 128 THR 128 125 125 THR THR A . n A 1 129 GLY 129 126 126 GLY GLY A . n A 1 130 ILE 130 127 127 ILE ILE A . n A 1 131 GLY 131 128 128 GLY GLY A . n A 1 132 GLY 132 129 129 GLY GLY A . n A 1 133 ALA 133 130 130 ALA ALA A . n A 1 134 MSE 134 131 131 MSE MSE A . n A 1 135 ILE 135 132 132 ILE ILE A . n A 1 136 ILE 136 133 133 ILE ILE A . n A 1 137 ASN 137 134 134 ASN ASN A . n A 1 138 GLY 138 135 135 GLY GLY A . n A 1 139 ARG 139 136 136 ARG ARG A . n A 1 140 LEU 140 137 137 LEU LEU A . n A 1 141 HIS 141 138 138 HIS HIS A . n A 1 142 ARG 142 139 139 ARG ARG A . n A 1 143 GLY 143 140 140 GLY GLY A . n A 1 144 ARG 144 141 141 ARG ARG A . n A 1 145 HIS 145 142 142 HIS HIS A . n A 1 146 GLY 146 143 143 GLY GLY A . n A 1 147 LEU 147 144 144 LEU LEU A . n A 1 148 GLY 148 145 145 GLY GLY A . n A 1 149 GLY 149 146 146 GLY GLY A . n A 1 150 GLU 150 147 147 GLU GLU A . n A 1 151 PHE 151 148 148 PHE PHE A . n A 1 152 GLY 152 149 149 GLY GLY A . n A 1 153 TYR 153 150 150 TYR TYR A . n A 1 154 MSE 154 151 151 MSE MSE A . n A 1 155 THR 155 152 152 THR THR A . n A 1 156 THR 156 153 153 THR THR A . n A 1 157 LEU 157 154 154 LEU LEU A . n A 1 158 ALA 158 155 155 ALA ALA A . n A 1 159 PRO 159 156 156 PRO PRO A . n A 1 160 ALA 160 157 157 ALA ALA A . n A 1 161 GLU 161 158 158 GLU GLU A . n A 1 162 LYS 162 159 159 LYS LYS A . n A 1 163 LEU 163 160 160 LEU LEU A . n A 1 164 ASN 164 161 161 ASN ASN A . n A 1 165 ASN 165 162 162 ASN ASN A . n A 1 166 TRP 166 163 163 TRP TRP A . n A 1 167 SER 167 164 164 SER SER A . n A 1 168 GLN 168 165 165 GLN GLN A . n A 1 169 LEU 169 166 166 LEU LEU A . n A 1 170 ALA 170 167 167 ALA ALA A . n A 1 171 SER 171 168 168 SER SER A . n A 1 172 THR 172 169 169 THR THR A . n A 1 173 GLY 173 170 170 GLY GLY A . n A 1 174 ASN 174 171 171 ASN ASN A . n A 1 175 MSE 175 172 172 MSE MSE A . n A 1 176 VAL 176 173 173 VAL VAL A . n A 1 177 ARG 177 174 174 ARG ARG A . n A 1 178 TYR 178 175 175 TYR TYR A . n A 1 179 VAL 179 176 176 VAL VAL A . n A 1 180 ILE 180 177 177 ILE ILE A . n A 1 181 GLU 181 178 178 GLU GLU A . n A 1 182 LYS 182 179 179 LYS LYS A . n A 1 183 SER 183 180 180 SER SER A . n A 1 184 GLY 184 181 181 GLY GLY A . n A 1 185 HIS 185 182 182 HIS HIS A . n A 1 186 THR 186 183 183 THR THR A . n A 1 187 ASP 187 184 184 ASP ASP A . n A 1 188 TRP 188 185 185 TRP TRP A . n A 1 189 ASP 189 186 186 ASP ASP A . n A 1 190 GLY 190 187 187 GLY GLY A . n A 1 191 ARG 191 188 188 ARG ARG A . n A 1 192 LYS 192 189 189 LYS LYS A . n A 1 193 ILE 193 190 190 ILE ILE A . n A 1 194 TYR 194 191 191 TYR TYR A . n A 1 195 GLN 195 192 192 GLN GLN A . n A 1 196 GLU 196 193 193 GLU GLU A . n A 1 197 ALA 197 194 194 ALA ALA A . n A 1 198 ALA 198 195 195 ALA ALA A . n A 1 199 ALA 199 196 196 ALA ALA A . n A 1 200 GLY 200 197 197 GLY GLY A . n A 1 201 ASN 201 198 198 ASN ASN A . n A 1 202 ILE 202 199 199 ILE ILE A . n A 1 203 LEU 203 200 200 LEU LEU A . n A 1 204 CYS 204 201 201 CYS CYS A . n A 1 205 GLN 205 202 202 GLN GLN A . n A 1 206 GLU 206 203 203 GLU GLU A . n A 1 207 ALA 207 204 204 ALA ALA A . n A 1 208 ILE 208 205 205 ILE ILE A . n A 1 209 GLU 209 206 206 GLU GLU A . n A 1 210 ARG 210 207 207 ARG ARG A . n A 1 211 MSE 211 208 208 MSE MSE A . n A 1 212 ASN 212 209 209 ASN ASN A . n A 1 213 ARG 213 210 210 ARG ARG A . n A 1 214 ASN 214 211 211 ASN ASN A . n A 1 215 LEU 215 212 212 LEU LEU A . n A 1 216 ALA 216 213 213 ALA ALA A . n A 1 217 GLN 217 214 214 GLN GLN A . n A 1 218 GLY 218 215 215 GLY GLY A . n A 1 219 LEU 219 216 216 LEU LEU A . n A 1 220 LEU 220 217 217 LEU LEU A . n A 1 221 ASN 221 218 218 ASN ASN A . n A 1 222 ILE 222 219 219 ILE ILE A . n A 1 223 GLN 223 220 220 GLN GLN A . n A 1 224 TYR 224 221 221 TYR TYR A . n A 1 225 LEU 225 222 222 LEU LEU A . n A 1 226 ILE 226 223 223 ILE ILE A . n A 1 227 ASP 227 224 224 ASP ASP A . n A 1 228 PRO 228 225 225 PRO PRO A . n A 1 229 GLY 229 226 226 GLY GLY A . n A 1 230 VAL 230 227 227 VAL VAL A . n A 1 231 ILE 231 228 228 ILE ILE A . n A 1 232 SER 232 229 229 SER SER A . n A 1 233 LEU 233 230 230 LEU LEU A . n A 1 234 GLY 234 231 231 GLY GLY A . n A 1 235 GLY 235 232 232 GLY GLY A . n A 1 236 SER 236 233 233 SER SER A . n A 1 237 ILE 237 234 234 ILE ILE A . n A 1 238 SER 238 235 235 SER SER A . n A 1 239 GLN 239 236 236 GLN GLN A . n A 1 240 ASN 240 237 237 ASN ASN A . n A 1 241 PRO 241 238 238 PRO PRO A . n A 1 242 ASP 242 239 239 ASP ASP A . n A 1 243 PHE 243 240 240 PHE PHE A . n A 1 244 ILE 244 241 241 ILE ILE A . n A 1 245 GLN 245 242 242 GLN GLN A . n A 1 246 GLY 246 243 243 GLY GLY A . n A 1 247 VAL 247 244 244 VAL VAL A . n A 1 248 LYS 248 245 245 LYS LYS A . n A 1 249 LYS 249 246 246 LYS LYS A . n A 1 250 ALA 250 247 247 ALA ALA A . n A 1 251 VAL 251 248 248 VAL VAL A . n A 1 252 GLU 252 249 249 GLU GLU A . n A 1 253 ASP 253 250 250 ASP ASP A . n A 1 254 PHE 254 251 251 PHE PHE A . n A 1 255 VAL 255 252 252 VAL VAL A . n A 1 256 ASP 256 253 253 ASP ASP A . n A 1 257 ALA 257 254 254 ALA ALA A . n A 1 258 TYR 258 255 255 TYR TYR A . n A 1 259 GLU 259 256 256 GLU GLU A . n A 1 260 GLU 260 257 257 GLU GLU A . n A 1 261 TYR 261 258 258 TYR TYR A . n A 1 262 THR 262 259 259 THR THR A . n A 1 263 VAL 263 260 260 VAL VAL A . n A 1 264 ALA 264 261 261 ALA ALA A . n A 1 265 PRO 265 262 262 PRO PRO A . n A 1 266 VAL 266 263 263 VAL VAL A . n A 1 267 ILE 267 264 264 ILE ILE A . n A 1 268 GLN 268 265 265 GLN GLN A . n A 1 269 ALA 269 266 266 ALA ALA A . n A 1 270 CYS 270 267 267 CYS CYS A . n A 1 271 THR 271 268 268 THR THR A . n A 1 272 TYR 272 269 269 TYR TYR A . n A 1 273 HIS 273 270 270 HIS HIS A . n A 1 274 ALA 274 271 271 ALA ALA A . n A 1 275 ASP 275 272 272 ASP ASP A . n A 1 276 ALA 276 273 273 ALA ALA A . n A 1 277 ASN 277 274 274 ASN ASN A . n A 1 278 LEU 278 275 275 LEU LEU A . n A 1 279 TYR 279 276 276 TYR TYR A . n A 1 280 GLY 280 277 277 GLY GLY A . n A 1 281 ALA 281 278 278 ALA ALA A . n A 1 282 LEU 282 279 279 LEU LEU A . n A 1 283 VAL 283 280 280 VAL VAL A . n A 1 284 ASN 284 281 281 ASN ASN A . n A 1 285 TRP 285 282 282 TRP TRP A . n A 1 286 LEU 286 283 283 LEU LEU A . n A 1 287 GLN 287 284 284 GLN GLN A . n A 1 288 GLU 288 285 285 GLU GLU A . n A 1 289 GLU 289 286 286 GLU GLU A . n A 1 290 LYS 290 287 287 LYS LYS A . n A 1 291 GLN 291 288 288 GLN GLN A . n A 1 292 TRP 292 289 289 TRP TRP A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 TRS 1 293 1 TRS TRS A . F 4 HOH 1 294 1 HOH HOH A . F 4 HOH 2 295 2 HOH HOH A . F 4 HOH 3 296 3 HOH HOH A . F 4 HOH 4 297 4 HOH HOH A . F 4 HOH 5 298 5 HOH HOH A . F 4 HOH 6 299 6 HOH HOH A . F 4 HOH 7 300 7 HOH HOH A . F 4 HOH 8 301 8 HOH HOH A . F 4 HOH 9 302 9 HOH HOH A . F 4 HOH 10 303 10 HOH HOH A . F 4 HOH 11 304 11 HOH HOH A . F 4 HOH 12 305 12 HOH HOH A . F 4 HOH 13 306 13 HOH HOH A . F 4 HOH 14 307 14 HOH HOH A . F 4 HOH 15 308 15 HOH HOH A . F 4 HOH 16 309 16 HOH HOH A . F 4 HOH 17 310 17 HOH HOH A . F 4 HOH 18 311 18 HOH HOH A . F 4 HOH 19 312 19 HOH HOH A . F 4 HOH 20 313 20 HOH HOH A . F 4 HOH 21 314 21 HOH HOH A . F 4 HOH 22 315 22 HOH HOH A . F 4 HOH 23 316 24 HOH HOH A . F 4 HOH 24 317 25 HOH HOH A . F 4 HOH 25 318 26 HOH HOH A . F 4 HOH 26 319 27 HOH HOH A . F 4 HOH 27 320 28 HOH HOH A . F 4 HOH 28 321 29 HOH HOH A . F 4 HOH 29 322 30 HOH HOH A . F 4 HOH 30 323 31 HOH HOH A . F 4 HOH 31 324 32 HOH HOH A . F 4 HOH 32 325 33 HOH HOH A . F 4 HOH 33 326 34 HOH HOH A . F 4 HOH 34 327 35 HOH HOH A . F 4 HOH 35 328 36 HOH HOH A . F 4 HOH 36 329 37 HOH HOH A . F 4 HOH 37 330 38 HOH HOH A . F 4 HOH 38 331 39 HOH HOH A . F 4 HOH 39 332 40 HOH HOH A . F 4 HOH 40 333 41 HOH HOH A . F 4 HOH 41 334 42 HOH HOH A . F 4 HOH 42 335 43 HOH HOH A . F 4 HOH 43 336 44 HOH HOH A . F 4 HOH 44 337 45 HOH HOH A . F 4 HOH 45 338 46 HOH HOH A . F 4 HOH 46 339 47 HOH HOH A . F 4 HOH 47 340 48 HOH HOH A . F 4 HOH 48 341 49 HOH HOH A . F 4 HOH 49 342 50 HOH HOH A . F 4 HOH 50 343 51 HOH HOH A . F 4 HOH 51 344 52 HOH HOH A . F 4 HOH 52 345 53 HOH HOH A . F 4 HOH 53 346 54 HOH HOH A . F 4 HOH 54 347 55 HOH HOH A . F 4 HOH 55 348 56 HOH HOH A . F 4 HOH 56 349 57 HOH HOH A . F 4 HOH 57 350 58 HOH HOH A . F 4 HOH 58 351 59 HOH HOH A . F 4 HOH 59 352 60 HOH HOH A . F 4 HOH 60 353 61 HOH HOH A . F 4 HOH 61 354 62 HOH HOH A . F 4 HOH 62 355 63 HOH HOH A . F 4 HOH 63 356 64 HOH HOH A . F 4 HOH 64 357 65 HOH HOH A . F 4 HOH 65 358 66 HOH HOH A . F 4 HOH 66 359 67 HOH HOH A . F 4 HOH 67 360 68 HOH HOH A . F 4 HOH 68 361 69 HOH HOH A . F 4 HOH 69 362 70 HOH HOH A . F 4 HOH 70 363 71 HOH HOH A . F 4 HOH 71 364 72 HOH HOH A . F 4 HOH 72 365 73 HOH HOH A . F 4 HOH 73 366 74 HOH HOH A . F 4 HOH 74 367 75 HOH HOH A . F 4 HOH 75 368 76 HOH HOH A . F 4 HOH 76 369 77 HOH HOH A . F 4 HOH 77 370 78 HOH HOH A . F 4 HOH 78 371 79 HOH HOH A . F 4 HOH 79 372 80 HOH HOH A . F 4 HOH 80 373 81 HOH HOH A . F 4 HOH 81 374 82 HOH HOH A . F 4 HOH 82 375 83 HOH HOH A . F 4 HOH 83 376 84 HOH HOH A . F 4 HOH 84 377 85 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_900003 _pdbx_molecule_features.name sucrose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Nutrient _pdbx_molecule_features.details 'oligosaccharide with reducing-end-to-reducing-end glycosidic bond' # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_900003 B 2 PRD_900003 C 3 PRD_900003 D # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 60 A MSE 57 ? MET SELENOMETHIONINE 3 A MSE 134 A MSE 131 ? MET SELENOMETHIONINE 4 A MSE 154 A MSE 151 ? MET SELENOMETHIONINE 5 A MSE 175 A MSE 172 ? MET SELENOMETHIONINE 6 A MSE 211 A MSE 208 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6310 ? 1 MORE -21 ? 1 'SSA (A^2)' 24370 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 58.8385000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-05-30 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' 'Non-polymer description' 10 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' entity_name_com 5 4 'Structure model' pdbx_branch_scheme 6 4 'Structure model' pdbx_chem_comp_identifier 7 4 'Structure model' pdbx_entity_branch 8 4 'Structure model' pdbx_entity_branch_descriptor 9 4 'Structure model' pdbx_entity_branch_link 10 4 'Structure model' pdbx_entity_branch_list 11 4 'Structure model' pdbx_entity_nonpoly 12 4 'Structure model' pdbx_molecule_features 13 4 'Structure model' pdbx_nonpoly_scheme 14 4 'Structure model' struct_conn 15 4 'Structure model' struct_ref_seq_dif 16 4 'Structure model' struct_site 17 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_atom_id' 10 4 'Structure model' '_atom_site.label_comp_id' 11 4 'Structure model' '_atom_site.type_symbol' 12 4 'Structure model' '_chem_comp.formula' 13 4 'Structure model' '_chem_comp.formula_weight' 14 4 'Structure model' '_chem_comp.id' 15 4 'Structure model' '_chem_comp.mon_nstd_flag' 16 4 'Structure model' '_chem_comp.name' 17 4 'Structure model' '_chem_comp.pdbx_synonyms' 18 4 'Structure model' '_chem_comp.type' 19 4 'Structure model' '_entity.formula_weight' 20 4 'Structure model' '_entity.pdbx_description' 21 4 'Structure model' '_entity.src_method' 22 4 'Structure model' '_entity.type' 23 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-2000 'data scaling' . ? 3 HKL-3000 phasing . ? 4 SHELXE 'model building' . ? 5 SOLVE phasing . ? 6 RESOLVE phasing . ? 7 ARP/wARP 'model building' . ? 8 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A LYS 14 ? ? CG A LYS 14 ? ? 1.685 1.521 0.164 0.027 N 2 1 CB A VAL 69 ? ? CG1 A VAL 69 ? ? 1.665 1.524 0.141 0.021 N 3 1 CB A TRP 84 ? ? CG A TRP 84 ? ? 1.610 1.498 0.112 0.018 N 4 1 CB A VAL 122 ? ? CG1 A VAL 122 ? ? 1.660 1.524 0.136 0.021 N 5 1 CG A GLU 178 ? ? CD A GLU 178 ? ? 1.608 1.515 0.093 0.015 N 6 1 CD1 A TYR 269 ? ? CE1 A TYR 269 ? ? 1.524 1.389 0.135 0.015 N 7 1 CD1 A TYR 276 ? ? CE1 A TYR 276 ? ? 1.482 1.389 0.093 0.015 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A LEU 97 ? ? CG A LEU 97 ? ? CD1 A LEU 97 ? ? 100.50 111.00 -10.50 1.70 N 2 1 CB A LEU 97 ? ? CG A LEU 97 ? ? CD2 A LEU 97 ? ? 98.25 111.00 -12.75 1.70 N 3 1 CB A LEU 110 ? ? CG A LEU 110 ? ? CD2 A LEU 110 ? ? 97.08 111.00 -13.92 1.70 N 4 1 CB A LEU 137 ? ? CG A LEU 137 ? ? CD2 A LEU 137 ? ? 98.88 111.00 -12.12 1.70 N 5 1 CB A ASP 253 ? ? CG A ASP 253 ? ? OD1 A ASP 253 ? ? 123.96 118.30 5.66 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 76 ? ? -119.21 77.97 2 1 GLU A 116 ? ? -106.86 -63.52 3 1 ASN A 134 ? ? 32.75 57.26 4 1 ALA A 157 ? ? -146.46 -124.68 5 1 ASN A 198 ? ? -57.71 107.87 6 1 THR A 259 ? ? -111.52 -73.70 7 1 HIS A 270 ? ? -146.25 -64.51 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 GLC 1 B GLC 1 L SUC 11 n B 2 FRU 2 B FRU 2 L SUC 11 n C 2 GLC 1 C GLC 1 L SUC 21 n C 2 FRU 2 C FRU 2 L SUC 21 n D 2 GLC 1 D GLC 1 L SUC 31 n D 2 FRU 2 D FRU 2 L SUC 31 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FRU 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DFrufb FRU 'COMMON NAME' GMML 1.0 b-D-fructofuranose FRU 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Fruf FRU 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fru GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DFrufb2-1DGlcpa 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,2,1/[ha122h-2b_2-5][a2122h-1a_1-5]/1-2/a2-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-Fruf]{[(2+1)][a-D-Glcp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 GLC 1 n 2 FRU 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRS 4 water HOH #