data_2GWA # _entry.id 2GWA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2GWA pdb_00002gwa 10.2210/pdb2gwa/pdb NDB DD0083 ? ? RCSB RCSB037626 ? ? WWPDB D_1000037626 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2GB9 _pdbx_database_related.details 'd(CGTACG)2 crosslinked bis-acridine complex.' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2GWA _pdbx_database_status.recvd_initial_deposition_date 2006-05-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Brogden, A.L.' 1 'Hopcroft, N.H.' 2 'Cardin, C.J.' 3 'Searcey, M.' 4 # _citation.id primary _citation.title 'Ligand bridging of the DNA Holliday junction: molecular recognition of a stacked-X four-way junction by a small molecule.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 46 _citation.page_first 3850 _citation.page_last 3854 _citation.year 2007 _citation.journal_id_ASTM ACIEAY _citation.country GE _citation.journal_id_ISSN 0570-0833 _citation.journal_id_CSD 0179 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17477457 _citation.pdbx_database_id_DOI 10.1002/anie.200603760 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Brogden, A.L.' 1 ? primary 'Hopcroft, N.H.' 2 ? primary 'Searcey, M.' 3 ? primary 'Cardin, C.J.' 4 ? # _cell.entry_id 2GWA _cell.length_a 65.224 _cell.length_b 25.142 _cell.length_c 37.541 _cell.angle_alpha 90.00 _cell.angle_beta 110.97 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2GWA _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*Tp*Cp*Gp*Gp*Tp*Ap*Cp*Cp*Gp*A)-3'" 3045.005 2 ? ? ? ? 2 non-polymer syn "9,9'-(HEXANE-1,6-DIYLDIIMINO)BIS{N-[2-(DIMETHYLAMINO)ETHYL]ACRIDINE-4-CARBOXAMIDE}" 698.899 1 ? ? ? ? 3 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 4 water nat water 18.015 129 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DC)(DG)(DG)(DT)(DA)(DC)(DC)(DG)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TCGGTACCGA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DA n 1 7 DC n 1 8 DC n 1 9 DG n 1 10 DA n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2GWA _struct_ref.pdbx_db_accession 2GWA _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2GWA A 1 ? 10 ? 2GWA 1 ? 10 ? 1 10 2 1 2GWA B 1 ? 10 ? 2GWA 1 ? 10 ? 1 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A4C non-polymer . "9,9'-(HEXANE-1,6-DIYLDIIMINO)BIS{N-[2-(DIMETHYLAMINO)ETHYL]ACRIDINE-4-CARBOXAMIDE}" ? 'C42 H50 N8 O2' 698.899 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 # _exptl.entry_id 2GWA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_percent_sol 45.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '40mM SODIUM CACODYLATE PH 7.0, 12mM SPERMINE, 10% MPD, WITH 35% MPD RESERVOIR., VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'SODIUM CACODYLATE' ? ? ? 1 2 1 SPERMINE ? ? ? 1 3 1 MPD ? ? ? 1 4 1 H2O ? ? ? 1 5 2 'SODIUM CACODYLATE' ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2005-02-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.806 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.806 # _reflns.entry_id 2GWA _reflns.observed_criterion_sigma_I 5 _reflns.observed_criterion_sigma_F 5 _reflns.d_resolution_low 6.0 _reflns.d_resolution_high 1.75 _reflns.number_obs 4045 _reflns.number_all 4960 _reflns.percent_possible_obs 86.4 _reflns.pdbx_Rmerge_I_obs 0.042 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.1 _reflns.B_iso_Wilson_estimate 23.7 _reflns.pdbx_redundancy 2.2 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.79 _reflns_shell.percent_possible_all 86.4 _reflns_shell.Rmerge_I_obs 0.093 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.2 _reflns_shell.pdbx_redundancy 2.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 4960 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2GWA _refine.ls_number_reflns_obs 4045 _refine.ls_number_reflns_all 4960 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6.00 _refine.ls_d_res_high 1.75 _refine.ls_percent_reflns_obs 86.4 _refine.ls_R_factor_obs 0.2769 _refine.ls_R_factor_all 0.2769 _refine.ls_R_factor_R_work 0.268 _refine.ls_R_factor_R_free 0.3101 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 248 _refine.ls_number_parameters 2292 _refine.ls_number_restraints 1970 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1NQS' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2GWA _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen 0.00 _refine_analyze.occupancy_sum_non_hydrogen 572.00 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 40 _refine_hist.number_atoms_solvent 129 _refine_hist.number_atoms_total 573 _refine_hist.d_res_high 1.75 _refine_hist.d_res_low 6.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.016 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.018 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0018 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.092 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 2GWA _pdbx_refine.R_factor_all_no_cutoff 0.2769 _pdbx_refine.R_factor_obs_no_cutoff 0.2769 _pdbx_refine.free_R_factor_no_cutoff 0.3101 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.0 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 248 _pdbx_refine.R_factor_all_4sig_cutoff 0.268 _pdbx_refine.R_factor_obs_4sig_cutoff 0.268 _pdbx_refine.free_R_factor_4sig_cutoff 0.2993 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 4.9 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 200 _pdbx_refine.number_reflns_obs_4sig_cutoff 4045 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 2GWA _struct.title 'Crystal Structure of a Complex Formed Between the DNA Holliday Junction and a Bis-Acridine Molecule.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2GWA _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA HOLLIDAY JUNCTION BIS-ACRIDINE, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details 'THE SECOND PART OF THE BIOLOGICAL UNIT IS GENERATED BY THE SYMMETRY OPERATION: -X, Y, -Z.' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? C A4C . CX6 ? ? ? 1_555 C A4C . CX6 ? ? A A4C 11 A A4C 11 2_555 ? ? ? ? ? ? ? 1.513 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 1 B DA 10 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog2 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A A4C 11 ? 8 'BINDING SITE FOR RESIDUE A4C A 11' AC2 Software A SPM 12 ? 7 'BINDING SITE FOR RESIDUE SPM A 12' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DT A 5 ? DT A 5 . ? 1_555 ? 2 AC1 8 DA A 6 ? DA A 6 . ? 1_555 ? 3 AC1 8 DA A 6 ? DA A 6 . ? 2_555 ? 4 AC1 8 DC A 7 ? DC A 7 . ? 2_555 ? 5 AC1 8 DC A 8 ? DC A 8 . ? 2_555 ? 6 AC1 8 DG B 4 ? DG B 4 . ? 1_555 ? 7 AC1 8 DT B 5 ? DT B 5 . ? 1_555 ? 8 AC1 8 DA B 6 ? DA B 6 . ? 1_555 ? 9 AC2 7 DG A 4 ? DG A 4 . ? 1_555 ? 10 AC2 7 DT A 5 ? DT A 5 . ? 1_555 ? 11 AC2 7 DA A 6 ? DA A 6 . ? 1_555 ? 12 AC2 7 HOH E . ? HOH A 124 . ? 1_555 ? 13 AC2 7 HOH E . ? HOH A 158 . ? 1_545 ? 14 AC2 7 HOH E . ? HOH A 167 . ? 1_555 ? 15 AC2 7 HOH E . ? HOH A 197 . ? 1_555 ? # _database_PDB_matrix.entry_id 2GWA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 2GWA _atom_sites.fract_transf_matrix[1][1] 0.015332 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005876 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.039774 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028527 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _database_PDB_caveat.text 'chirality error at G4,A6 of chain A' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DA 10 10 10 DA A A . n B 1 1 DT 1 1 1 DT T B . n B 1 2 DC 2 2 2 DC C B . n B 1 3 DG 3 3 3 DG G B . n B 1 4 DG 4 4 4 DG G B . n B 1 5 DT 5 5 5 DT T B . n B 1 6 DA 6 6 6 DA A B . n B 1 7 DC 7 7 7 DC C B . n B 1 8 DC 8 8 8 DC C B . n B 1 9 DG 9 9 9 DG G B . n B 1 10 DA 10 10 10 DA A B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A4C 1 11 1 A4C A4C A . D 3 SPM 1 12 2 SPM SPM A . E 4 HOH 1 101 101 HOH HOH A . E 4 HOH 2 102 102 HOH HOH A . E 4 HOH 3 103 103 HOH HOH A . E 4 HOH 4 107 107 HOH HOH A . E 4 HOH 5 110 110 HOH HOH A . E 4 HOH 6 111 111 HOH HOH A . E 4 HOH 7 115 115 HOH HOH A . E 4 HOH 8 117 117 HOH HOH A . E 4 HOH 9 118 118 HOH HOH A . E 4 HOH 10 120 120 HOH HOH A . E 4 HOH 11 124 124 HOH HOH A . E 4 HOH 12 128 128 HOH HOH A . E 4 HOH 13 131 131 HOH HOH A . E 4 HOH 14 132 132 HOH HOH A . E 4 HOH 15 138 138 HOH HOH A . E 4 HOH 16 139 139 HOH HOH A . E 4 HOH 17 140 140 HOH HOH A . E 4 HOH 18 146 146 HOH HOH A . E 4 HOH 19 147 147 HOH HOH A . E 4 HOH 20 148 148 HOH HOH A . E 4 HOH 21 149 149 HOH HOH A . E 4 HOH 22 150 150 HOH HOH A . E 4 HOH 23 152 152 HOH HOH A . E 4 HOH 24 153 153 HOH HOH A . E 4 HOH 25 156 156 HOH HOH A . E 4 HOH 26 158 158 HOH HOH A . E 4 HOH 27 159 159 HOH HOH A . E 4 HOH 28 163 163 HOH HOH A . E 4 HOH 29 165 165 HOH HOH A . E 4 HOH 30 167 167 HOH HOH A . E 4 HOH 31 169 169 HOH HOH A . E 4 HOH 32 170 170 HOH HOH A . E 4 HOH 33 171 171 HOH HOH A . E 4 HOH 34 174 174 HOH HOH A . E 4 HOH 35 175 175 HOH HOH A . E 4 HOH 36 177 177 HOH HOH A . E 4 HOH 37 178 178 HOH HOH A . E 4 HOH 38 181 181 HOH HOH A . E 4 HOH 39 184 184 HOH HOH A . E 4 HOH 40 191 191 HOH HOH A . E 4 HOH 41 195 195 HOH HOH A . E 4 HOH 42 197 197 HOH HOH A . E 4 HOH 43 200 200 HOH HOH A . E 4 HOH 44 201 201 HOH HOH A . E 4 HOH 45 202 202 HOH HOH A . E 4 HOH 46 204 204 HOH HOH A . E 4 HOH 47 208 208 HOH HOH A . E 4 HOH 48 210 210 HOH HOH A . E 4 HOH 49 220 220 HOH HOH A . E 4 HOH 50 223 223 HOH HOH A . E 4 HOH 51 224 224 HOH HOH A . E 4 HOH 52 226 226 HOH HOH A . E 4 HOH 53 227 227 HOH HOH A . E 4 HOH 54 229 229 HOH HOH A . F 4 HOH 1 104 104 HOH HOH B . F 4 HOH 2 105 105 HOH HOH B . F 4 HOH 3 106 106 HOH HOH B . F 4 HOH 4 108 108 HOH HOH B . F 4 HOH 5 109 109 HOH HOH B . F 4 HOH 6 112 112 HOH HOH B . F 4 HOH 7 113 113 HOH HOH B . F 4 HOH 8 114 114 HOH HOH B . F 4 HOH 9 116 116 HOH HOH B . F 4 HOH 10 119 119 HOH HOH B . F 4 HOH 11 121 121 HOH HOH B . F 4 HOH 12 122 122 HOH HOH B . F 4 HOH 13 123 123 HOH HOH B . F 4 HOH 14 125 125 HOH HOH B . F 4 HOH 15 126 126 HOH HOH B . F 4 HOH 16 127 127 HOH HOH B . F 4 HOH 17 129 129 HOH HOH B . F 4 HOH 18 130 130 HOH HOH B . F 4 HOH 19 133 133 HOH HOH B . F 4 HOH 20 134 134 HOH HOH B . F 4 HOH 21 135 135 HOH HOH B . F 4 HOH 22 136 136 HOH HOH B . F 4 HOH 23 137 137 HOH HOH B . F 4 HOH 24 141 141 HOH HOH B . F 4 HOH 25 142 142 HOH HOH B . F 4 HOH 26 143 143 HOH HOH B . F 4 HOH 27 144 144 HOH HOH B . F 4 HOH 28 145 145 HOH HOH B . F 4 HOH 29 151 151 HOH HOH B . F 4 HOH 30 154 154 HOH HOH B . F 4 HOH 31 155 155 HOH HOH B . F 4 HOH 32 157 157 HOH HOH B . F 4 HOH 33 160 160 HOH HOH B . F 4 HOH 34 161 161 HOH HOH B . F 4 HOH 35 162 162 HOH HOH B . F 4 HOH 36 164 164 HOH HOH B . F 4 HOH 37 166 166 HOH HOH B . F 4 HOH 38 168 168 HOH HOH B . F 4 HOH 39 172 172 HOH HOH B . F 4 HOH 40 173 173 HOH HOH B . F 4 HOH 41 176 176 HOH HOH B . F 4 HOH 42 179 179 HOH HOH B . F 4 HOH 43 180 180 HOH HOH B . F 4 HOH 44 182 182 HOH HOH B . F 4 HOH 45 183 183 HOH HOH B . F 4 HOH 46 185 185 HOH HOH B . F 4 HOH 47 186 186 HOH HOH B . F 4 HOH 48 187 187 HOH HOH B . F 4 HOH 49 188 188 HOH HOH B . F 4 HOH 50 189 189 HOH HOH B . F 4 HOH 51 190 190 HOH HOH B . F 4 HOH 52 192 192 HOH HOH B . F 4 HOH 53 193 193 HOH HOH B . F 4 HOH 54 194 194 HOH HOH B . F 4 HOH 55 196 196 HOH HOH B . F 4 HOH 56 198 198 HOH HOH B . F 4 HOH 57 199 199 HOH HOH B . F 4 HOH 58 203 203 HOH HOH B . F 4 HOH 59 205 205 HOH HOH B . F 4 HOH 60 206 206 HOH HOH B . F 4 HOH 61 207 207 HOH HOH B . F 4 HOH 62 209 209 HOH HOH B . F 4 HOH 63 211 211 HOH HOH B . F 4 HOH 64 212 212 HOH HOH B . F 4 HOH 65 213 213 HOH HOH B . F 4 HOH 66 214 214 HOH HOH B . F 4 HOH 67 215 215 HOH HOH B . F 4 HOH 68 216 216 HOH HOH B . F 4 HOH 69 217 217 HOH HOH B . F 4 HOH 70 218 218 HOH HOH B . F 4 HOH 71 219 219 HOH HOH B . F 4 HOH 72 221 221 HOH HOH B . F 4 HOH 73 222 222 HOH HOH B . F 4 HOH 74 225 225 HOH HOH B . F 4 HOH 75 228 228 HOH HOH B . # _struct_site_keywords.site_id 1 _struct_site_keywords.text bis-intercalation # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 107 ? E HOH . 2 1 B HOH 182 ? F HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-06 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 4 'Structure model' software 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' diffrn_source 7 5 'Structure model' pdbx_initial_refinement_model 8 5 'Structure model' struct_conn 9 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 6 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELX 'model building' . ? 1 SHELXL-97 refinement . ? 2 MAR345 'data collection' . ? 3 MOSFLM 'data reduction' . ? 4 # _pdbx_database_remark.id 600 _pdbx_database_remark.text ;HETEROGEN HETEROGEN A4C 1 REPRESENTS ONE HALF OF THE LIGAND, THE OTHER HALF IS GENERATED BY THE SYMMETRY OPERATION USED TO GENERATE THE BIOLOGICAL UNIT. THE MOLECULE AS A WHOLE LIES ON A CRYSTALLOGRAPHIC AXIS OF TWO-FOLD ROTATIONAL SYMMETRY. HENCE, IN THE ASYMMETRIC UNIT, ONLY HALF THE LIGAND IS PRESENT IN THE COORDINATE FILE SUBMITTED. LINKS ARE PROVIDED BETWEEN SYMMETRY RELATED CX6 ATOMS. ; # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 N9 _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 DA _pdbx_validate_rmsd_bond.auth_seq_id_1 6 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 C4 _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 DA _pdbx_validate_rmsd_bond.auth_seq_id_2 6 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.335 _pdbx_validate_rmsd_bond.bond_target_value 1.374 _pdbx_validate_rmsd_bond.bond_deviation -0.039 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A DT 1 ? ? C2 A DT 1 ? ? N3 A DT 1 ? ? 119.05 114.60 4.45 0.60 N 2 1 C2 A DT 1 ? ? N3 A DT 1 ? ? C4 A DT 1 ? ? 120.87 127.20 -6.33 0.60 N 3 1 N3 A DT 1 ? ? C4 A DT 1 ? ? C5 A DT 1 ? ? 119.10 115.20 3.90 0.60 N 4 1 N9 A DG 3 ? ? "C1'" A DG 3 ? ? "C2'" A DG 3 ? ? 127.57 114.30 13.27 1.40 N 5 1 C6 A DG 3 ? ? N1 A DG 3 ? ? C2 A DG 3 ? ? 119.79 125.10 -5.31 0.60 N 6 1 C2 A DG 3 ? ? N3 A DG 3 ? ? C4 A DG 3 ? ? 120.81 111.90 8.91 0.50 N 7 1 N3 A DG 3 ? ? C4 A DG 3 ? ? C5 A DG 3 ? ? 120.13 128.60 -8.47 0.50 N 8 1 C5 A DG 3 ? ? C6 A DG 3 ? ? N1 A DG 3 ? ? 119.63 111.50 8.13 0.50 N 9 1 N3 A DG 3 ? ? C4 A DG 3 ? ? N9 A DG 3 ? ? 133.47 126.00 7.47 0.60 N 10 1 C5 A DG 3 ? ? C6 A DG 3 ? ? O6 A DG 3 ? ? 119.10 128.60 -9.50 0.60 N 11 1 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DG 4 ? ? 128.04 119.70 8.34 1.20 Y 12 1 "O3'" A DG 3 ? ? P A DG 4 ? ? "O5'" A DG 4 ? ? 85.23 104.00 -18.77 1.90 Y 13 1 N9 A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 133.75 114.30 19.45 1.40 N 14 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 101.83 108.00 -6.17 0.70 N 15 1 C6 A DG 4 ? ? N1 A DG 4 ? ? C2 A DG 4 ? ? 120.07 125.10 -5.03 0.60 N 16 1 C2 A DG 4 ? ? N3 A DG 4 ? ? C4 A DG 4 ? ? 120.28 111.90 8.38 0.50 N 17 1 N3 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 120.48 128.60 -8.12 0.50 N 18 1 C5 A DG 4 ? ? C6 A DG 4 ? ? N1 A DG 4 ? ? 119.20 111.50 7.70 0.50 N 19 1 N3 A DG 4 ? ? C4 A DG 4 ? ? N9 A DG 4 ? ? 133.07 126.00 7.07 0.60 N 20 1 C5 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 119.37 128.60 -9.23 0.60 N 21 1 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DT 5 ? ? 127.09 119.70 7.39 1.20 Y 22 1 "O3'" A DG 4 ? ? P A DT 5 ? ? "O5'" A DT 5 ? ? 91.40 104.00 -12.60 1.90 Y 23 1 N1 A DT 5 ? ? "C1'" A DT 5 ? ? "C2'" A DT 5 ? ? 125.25 114.30 10.95 1.40 N 24 1 N1 A DT 5 ? ? C2 A DT 5 ? ? N3 A DT 5 ? ? 119.29 114.60 4.69 0.60 N 25 1 C2 A DT 5 ? ? N3 A DT 5 ? ? C4 A DT 5 ? ? 120.72 127.20 -6.48 0.60 N 26 1 N3 A DT 5 ? ? C4 A DT 5 ? ? C5 A DT 5 ? ? 118.99 115.20 3.79 0.60 N 27 1 "O3'" A DT 5 ? ? P A DA 6 ? ? "O5'" A DA 6 ? ? 91.96 104.00 -12.04 1.90 Y 28 1 N9 A DA 6 ? ? "C1'" A DA 6 ? ? "C2'" A DA 6 ? ? 124.86 114.30 10.56 1.40 N 29 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 111.15 108.30 2.85 0.30 N 30 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 120.73 129.30 -8.57 0.50 N 31 1 C2 A DA 6 ? ? N3 A DA 6 ? ? C4 A DA 6 ? ? 119.89 110.60 9.29 0.50 N 32 1 N3 A DA 6 ? ? C4 A DA 6 ? ? C5 A DA 6 ? ? 121.62 126.80 -5.18 0.70 N 33 1 "C3'" A DA 6 ? ? "O3'" A DA 6 ? ? P A DC 7 ? ? 129.99 119.70 10.29 1.20 Y 34 1 "O3'" A DA 6 ? ? P A DC 7 ? ? "O5'" A DC 7 ? ? 91.59 104.00 -12.41 1.90 Y 35 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 103.23 108.00 -4.77 0.70 N 36 1 "C3'" A DC 7 ? ? "O3'" A DC 7 ? ? P A DC 8 ? ? 127.60 119.70 7.90 1.20 Y 37 1 "O3'" A DC 7 ? ? P A DC 8 ? ? "O5'" A DC 8 ? ? 87.50 104.00 -16.50 1.90 Y 38 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.71 108.30 2.41 0.30 N 39 1 "O3'" A DC 8 ? ? P A DG 9 ? ? "O5'" A DG 9 ? ? 86.15 104.00 -17.85 1.90 Y 40 1 N9 A DG 9 ? ? "C1'" A DG 9 ? ? "C2'" A DG 9 ? ? 127.65 114.30 13.35 1.40 N 41 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.17 108.30 1.87 0.30 N 42 1 C6 A DG 9 ? ? N1 A DG 9 ? ? C2 A DG 9 ? ? 120.05 125.10 -5.05 0.60 N 43 1 C2 A DG 9 ? ? N3 A DG 9 ? ? C4 A DG 9 ? ? 120.14 111.90 8.24 0.50 N 44 1 N3 A DG 9 ? ? C4 A DG 9 ? ? C5 A DG 9 ? ? 120.53 128.60 -8.07 0.50 N 45 1 C5 A DG 9 ? ? C6 A DG 9 ? ? N1 A DG 9 ? ? 119.10 111.50 7.60 0.50 N 46 1 N3 A DG 9 ? ? C4 A DG 9 ? ? N9 A DG 9 ? ? 132.84 126.00 6.84 0.60 N 47 1 C5 A DG 9 ? ? C6 A DG 9 ? ? O6 A DG 9 ? ? 119.26 128.60 -9.34 0.60 N 48 1 N9 A DA 10 ? ? "C1'" A DA 10 ? ? "C2'" A DA 10 ? ? 128.72 114.30 14.42 1.40 N 49 1 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 110.12 108.30 1.82 0.30 N 50 1 N1 A DA 10 ? ? C2 A DA 10 ? ? N3 A DA 10 ? ? 120.87 129.30 -8.43 0.50 N 51 1 C2 A DA 10 ? ? N3 A DA 10 ? ? C4 A DA 10 ? ? 119.93 110.60 9.33 0.50 N 52 1 N3 A DA 10 ? ? C4 A DA 10 ? ? C5 A DA 10 ? ? 121.45 126.80 -5.35 0.70 N 53 1 N1 B DT 1 ? ? "C1'" B DT 1 ? ? "C2'" B DT 1 ? ? 127.73 114.30 13.43 1.40 N 54 1 "O4'" B DT 1 ? ? "C1'" B DT 1 ? ? N1 B DT 1 ? ? 115.88 108.30 7.58 0.30 N 55 1 N1 B DT 1 ? ? C2 B DT 1 ? ? N3 B DT 1 ? ? 119.21 114.60 4.61 0.60 N 56 1 C2 B DT 1 ? ? N3 B DT 1 ? ? C4 B DT 1 ? ? 121.09 127.20 -6.11 0.60 N 57 1 N3 B DT 1 ? ? C4 B DT 1 ? ? C5 B DT 1 ? ? 118.88 115.20 3.68 0.60 N 58 1 N1 B DC 2 ? ? "C1'" B DC 2 ? ? "C2'" B DC 2 ? ? 125.25 114.30 10.95 1.40 N 59 1 "O3'" B DC 2 ? ? P B DG 3 ? ? "O5'" B DG 3 ? ? 91.68 104.00 -12.32 1.90 Y 60 1 N9 B DG 3 ? ? "C1'" B DG 3 ? ? "C2'" B DG 3 ? ? 126.22 114.30 11.92 1.40 N 61 1 C6 B DG 3 ? ? N1 B DG 3 ? ? C2 B DG 3 ? ? 120.34 125.10 -4.76 0.60 N 62 1 C2 B DG 3 ? ? N3 B DG 3 ? ? C4 B DG 3 ? ? 120.00 111.90 8.10 0.50 N 63 1 N3 B DG 3 ? ? C4 B DG 3 ? ? C5 B DG 3 ? ? 120.64 128.60 -7.96 0.50 N 64 1 C5 B DG 3 ? ? C6 B DG 3 ? ? N1 B DG 3 ? ? 118.93 111.50 7.43 0.50 N 65 1 N3 B DG 3 ? ? C4 B DG 3 ? ? N9 B DG 3 ? ? 133.15 126.00 7.15 0.60 N 66 1 C5 B DG 3 ? ? C6 B DG 3 ? ? O6 B DG 3 ? ? 119.52 128.60 -9.08 0.60 N 67 1 "C3'" B DG 3 ? ? "O3'" B DG 3 ? ? P B DG 4 ? ? 128.24 119.70 8.54 1.20 Y 68 1 C6 B DG 4 ? ? N1 B DG 4 ? ? C2 B DG 4 ? ? 120.00 125.10 -5.10 0.60 N 69 1 C2 B DG 4 ? ? N3 B DG 4 ? ? C4 B DG 4 ? ? 120.25 111.90 8.35 0.50 N 70 1 N3 B DG 4 ? ? C4 B DG 4 ? ? C5 B DG 4 ? ? 120.23 128.60 -8.37 0.50 N 71 1 C5 B DG 4 ? ? C6 B DG 4 ? ? N1 B DG 4 ? ? 119.13 111.50 7.63 0.50 N 72 1 N3 B DG 4 ? ? C4 B DG 4 ? ? N9 B DG 4 ? ? 133.28 126.00 7.28 0.60 N 73 1 C5 B DG 4 ? ? C6 B DG 4 ? ? O6 B DG 4 ? ? 119.23 128.60 -9.37 0.60 N 74 1 "O3'" B DG 4 ? ? P B DT 5 ? ? "O5'" B DT 5 ? ? 92.28 104.00 -11.72 1.90 Y 75 1 N1 B DT 5 ? ? C2 B DT 5 ? ? N3 B DT 5 ? ? 119.29 114.60 4.69 0.60 N 76 1 C2 B DT 5 ? ? N3 B DT 5 ? ? C4 B DT 5 ? ? 120.65 127.20 -6.55 0.60 N 77 1 N3 B DT 5 ? ? C4 B DT 5 ? ? C5 B DT 5 ? ? 119.06 115.20 3.86 0.60 N 78 1 "O3'" B DT 5 ? ? P B DA 6 ? ? "O5'" B DA 6 ? ? 92.20 104.00 -11.80 1.90 Y 79 1 N1 B DA 6 ? ? C2 B DA 6 ? ? N3 B DA 6 ? ? 121.00 129.30 -8.30 0.50 N 80 1 C2 B DA 6 ? ? N3 B DA 6 ? ? C4 B DA 6 ? ? 119.91 110.60 9.31 0.50 N 81 1 N3 B DA 6 ? ? C4 B DA 6 ? ? C5 B DA 6 ? ? 121.28 126.80 -5.52 0.70 N 82 1 N3 B DA 6 ? ? C4 B DA 6 ? ? N9 B DA 6 ? ? 132.51 127.40 5.11 0.80 N 83 1 "C3'" B DA 6 ? ? "O3'" B DA 6 ? ? P B DC 7 ? ? 129.73 119.70 10.03 1.20 Y 84 1 "O3'" B DA 6 ? ? P B DC 7 ? ? "O5'" B DC 7 ? ? 92.17 104.00 -11.83 1.90 Y 85 1 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 103.66 108.00 -4.34 0.70 N 86 1 "O3'" B DC 7 ? ? P B DC 8 ? ? "O5'" B DC 8 ? ? 92.60 104.00 -11.40 1.90 Y 87 1 N1 B DC 8 ? ? "C1'" B DC 8 ? ? "C2'" B DC 8 ? ? 126.08 114.30 11.78 1.40 N 88 1 "O4'" B DC 8 ? ? "C1'" B DC 8 ? ? N1 B DC 8 ? ? 102.47 108.00 -5.53 0.70 N 89 1 N9 B DG 9 ? ? "C1'" B DG 9 ? ? "C2'" B DG 9 ? ? 126.81 114.30 12.51 1.40 N 90 1 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 113.27 108.30 4.97 0.30 N 91 1 C6 B DG 9 ? ? N1 B DG 9 ? ? C2 B DG 9 ? ? 119.59 125.10 -5.51 0.60 N 92 1 C2 B DG 9 ? ? N3 B DG 9 ? ? C4 B DG 9 ? ? 120.79 111.90 8.89 0.50 N 93 1 N3 B DG 9 ? ? C4 B DG 9 ? ? C5 B DG 9 ? ? 120.00 128.60 -8.60 0.50 N 94 1 C5 B DG 9 ? ? C6 B DG 9 ? ? N1 B DG 9 ? ? 119.73 111.50 8.23 0.50 N 95 1 N3 B DG 9 ? ? C4 B DG 9 ? ? N9 B DG 9 ? ? 133.59 126.00 7.59 0.60 N 96 1 C5 B DG 9 ? ? C6 B DG 9 ? ? O6 B DG 9 ? ? 119.10 128.60 -9.50 0.60 N 97 1 "C3'" B DG 9 ? ? "O3'" B DG 9 ? ? P B DA 10 ? ? 128.37 119.70 8.67 1.20 Y 98 1 "O3'" B DG 9 ? ? P B DA 10 ? ? "O5'" B DA 10 ? ? 85.76 104.00 -18.24 1.90 Y 99 1 N9 B DA 10 ? ? "C1'" B DA 10 ? ? "C2'" B DA 10 ? ? 126.44 114.30 12.14 1.40 N 100 1 N1 B DA 10 ? ? C2 B DA 10 ? ? N3 B DA 10 ? ? 120.55 129.30 -8.75 0.50 N 101 1 C2 B DA 10 ? ? N3 B DA 10 ? ? C4 B DA 10 ? ? 119.97 110.60 9.37 0.50 N 102 1 N3 B DA 10 ? ? C4 B DA 10 ? ? C5 B DA 10 ? ? 121.74 126.80 -5.06 0.70 N 103 1 N3 B DA 10 ? ? C4 B DA 10 ? ? N9 B DA 10 ? ? 132.23 127.40 4.83 0.80 N # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 "C4'" ? A DG 4 ? 'WRONG HAND' . 2 1 "C1'" ? A DA 6 ? 'WRONG HAND' . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A4C OD1 O N N 1 A4C CD1 C N N 2 A4C ND1 N N N 3 A4C CD2 C N N 4 A4C CD3 C N N 5 A4C ND2 N N N 6 A4C CD8 C N N 7 A4C CD7 C N N 8 A4C C4 C Y N 9 A4C C3 C Y N 10 A4C C2 C Y N 11 A4C C12 C Y N 12 A4C C11 C Y N 13 A4C C1 C Y N 14 A4C N10 N Y N 15 A4C C14 C Y N 16 A4C C5 C Y N 17 A4C C6 C Y N 18 A4C C7 C Y N 19 A4C C13 C Y N 20 A4C C8 C Y N 21 A4C C9 C Y N 22 A4C N9 N N N 23 A4C CX1 C N N 24 A4C CX2 C N N 25 A4C CX3 C N N 26 A4C OD2 O N N 27 A4C CD4 C N N 28 A4C ND3 N N N 29 A4C CD5 C N N 30 A4C CD6 C N N 31 A4C ND4 N N N 32 A4C CD0 C N N 33 A4C CD9 C N N 34 A4C C25 C Y N 35 A4C C26 C Y N 36 A4C C15 C Y N 37 A4C C27 C Y N 38 A4C C16 C Y N 39 A4C C17 C Y N 40 A4C N12 N Y N 41 A4C C18 C Y N 42 A4C C19 C Y N 43 A4C C20 C Y N 44 A4C C21 C Y N 45 A4C C22 C Y N 46 A4C C23 C Y N 47 A4C C24 C Y N 48 A4C N11 N N N 49 A4C CX4 C N N 50 A4C CX5 C N N 51 A4C CX6 C N N 52 A4C HND1 H N N 53 A4C HD21 H N N 54 A4C HD22 H N N 55 A4C HD31 H N N 56 A4C HD32 H N N 57 A4C HD81 H N N 58 A4C HD82 H N N 59 A4C HD83 H N N 60 A4C HD71 H N N 61 A4C HD72 H N N 62 A4C HD73 H N N 63 A4C H3 H N N 64 A4C H2 H N N 65 A4C H1 H N N 66 A4C H5 H N N 67 A4C H6 H N N 68 A4C H7 H N N 69 A4C H8 H N N 70 A4C HN9 H N N 71 A4C HX11 H N N 72 A4C HX12 H N N 73 A4C HX21 H N N 74 A4C HX22 H N N 75 A4C HX31 H N N 76 A4C HX32 H N N 77 A4C HND3 H N N 78 A4C HD51 H N N 79 A4C HD52 H N N 80 A4C HD61 H N N 81 A4C HD62 H N N 82 A4C HD01 H N N 83 A4C HD02 H N N 84 A4C HD03 H N N 85 A4C HD91 H N N 86 A4C HD92 H N N 87 A4C HD93 H N N 88 A4C H26 H N N 89 A4C H15 H N N 90 A4C H17 H N N 91 A4C H19 H N N 92 A4C H20 H N N 93 A4C H21 H N N 94 A4C H23 H N N 95 A4C HN11 H N N 96 A4C HX41 H N N 97 A4C HX42 H N N 98 A4C HX51 H N N 99 A4C HX52 H N N 100 A4C HX61 H N N 101 A4C HX62 H N N 102 DA OP3 O N N 103 DA P P N N 104 DA OP1 O N N 105 DA OP2 O N N 106 DA "O5'" O N N 107 DA "C5'" C N N 108 DA "C4'" C N R 109 DA "O4'" O N N 110 DA "C3'" C N S 111 DA "O3'" O N N 112 DA "C2'" C N N 113 DA "C1'" C N R 114 DA N9 N Y N 115 DA C8 C Y N 116 DA N7 N Y N 117 DA C5 C Y N 118 DA C6 C Y N 119 DA N6 N N N 120 DA N1 N Y N 121 DA C2 C Y N 122 DA N3 N Y N 123 DA C4 C Y N 124 DA HOP3 H N N 125 DA HOP2 H N N 126 DA "H5'" H N N 127 DA "H5''" H N N 128 DA "H4'" H N N 129 DA "H3'" H N N 130 DA "HO3'" H N N 131 DA "H2'" H N N 132 DA "H2''" H N N 133 DA "H1'" H N N 134 DA H8 H N N 135 DA H61 H N N 136 DA H62 H N N 137 DA H2 H N N 138 DC OP3 O N N 139 DC P P N N 140 DC OP1 O N N 141 DC OP2 O N N 142 DC "O5'" O N N 143 DC "C5'" C N N 144 DC "C4'" C N R 145 DC "O4'" O N N 146 DC "C3'" C N S 147 DC "O3'" O N N 148 DC "C2'" C N N 149 DC "C1'" C N R 150 DC N1 N N N 151 DC C2 C N N 152 DC O2 O N N 153 DC N3 N N N 154 DC C4 C N N 155 DC N4 N N N 156 DC C5 C N N 157 DC C6 C N N 158 DC HOP3 H N N 159 DC HOP2 H N N 160 DC "H5'" H N N 161 DC "H5''" H N N 162 DC "H4'" H N N 163 DC "H3'" H N N 164 DC "HO3'" H N N 165 DC "H2'" H N N 166 DC "H2''" H N N 167 DC "H1'" H N N 168 DC H41 H N N 169 DC H42 H N N 170 DC H5 H N N 171 DC H6 H N N 172 DG OP3 O N N 173 DG P P N N 174 DG OP1 O N N 175 DG OP2 O N N 176 DG "O5'" O N N 177 DG "C5'" C N N 178 DG "C4'" C N R 179 DG "O4'" O N N 180 DG "C3'" C N S 181 DG "O3'" O N N 182 DG "C2'" C N N 183 DG "C1'" C N R 184 DG N9 N Y N 185 DG C8 C Y N 186 DG N7 N Y N 187 DG C5 C Y N 188 DG C6 C N N 189 DG O6 O N N 190 DG N1 N N N 191 DG C2 C N N 192 DG N2 N N N 193 DG N3 N N N 194 DG C4 C Y N 195 DG HOP3 H N N 196 DG HOP2 H N N 197 DG "H5'" H N N 198 DG "H5''" H N N 199 DG "H4'" H N N 200 DG "H3'" H N N 201 DG "HO3'" H N N 202 DG "H2'" H N N 203 DG "H2''" H N N 204 DG "H1'" H N N 205 DG H8 H N N 206 DG H1 H N N 207 DG H21 H N N 208 DG H22 H N N 209 DT OP3 O N N 210 DT P P N N 211 DT OP1 O N N 212 DT OP2 O N N 213 DT "O5'" O N N 214 DT "C5'" C N N 215 DT "C4'" C N R 216 DT "O4'" O N N 217 DT "C3'" C N S 218 DT "O3'" O N N 219 DT "C2'" C N N 220 DT "C1'" C N R 221 DT N1 N N N 222 DT C2 C N N 223 DT O2 O N N 224 DT N3 N N N 225 DT C4 C N N 226 DT O4 O N N 227 DT C5 C N N 228 DT C7 C N N 229 DT C6 C N N 230 DT HOP3 H N N 231 DT HOP2 H N N 232 DT "H5'" H N N 233 DT "H5''" H N N 234 DT "H4'" H N N 235 DT "H3'" H N N 236 DT "HO3'" H N N 237 DT "H2'" H N N 238 DT "H2''" H N N 239 DT "H1'" H N N 240 DT H3 H N N 241 DT H71 H N N 242 DT H72 H N N 243 DT H73 H N N 244 DT H6 H N N 245 HOH O O N N 246 HOH H1 H N N 247 HOH H2 H N N 248 SPM N1 N N N 249 SPM C2 C N N 250 SPM C3 C N N 251 SPM C4 C N N 252 SPM N5 N N N 253 SPM C6 C N N 254 SPM C7 C N N 255 SPM C8 C N N 256 SPM C9 C N N 257 SPM N10 N N N 258 SPM C11 C N N 259 SPM C12 C N N 260 SPM C13 C N N 261 SPM N14 N N N 262 SPM HN11 H N N 263 SPM HN12 H N N 264 SPM H21 H N N 265 SPM H22 H N N 266 SPM H31 H N N 267 SPM H32 H N N 268 SPM H41 H N N 269 SPM H42 H N N 270 SPM HN5 H N N 271 SPM H61 H N N 272 SPM H62 H N N 273 SPM H71 H N N 274 SPM H72 H N N 275 SPM H81 H N N 276 SPM H82 H N N 277 SPM H91 H N N 278 SPM H92 H N N 279 SPM HN0 H N N 280 SPM H111 H N N 281 SPM H112 H N N 282 SPM H121 H N N 283 SPM H122 H N N 284 SPM H131 H N N 285 SPM H132 H N N 286 SPM HN41 H N N 287 SPM HN42 H N N 288 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A4C OD1 CD1 doub N N 1 A4C CD1 ND1 sing N N 2 A4C CD1 C4 sing N N 3 A4C ND1 CD2 sing N N 4 A4C ND1 HND1 sing N N 5 A4C CD2 CD3 sing N N 6 A4C CD2 HD21 sing N N 7 A4C CD2 HD22 sing N N 8 A4C CD3 ND2 sing N N 9 A4C CD3 HD31 sing N N 10 A4C CD3 HD32 sing N N 11 A4C ND2 CD8 sing N N 12 A4C ND2 CD7 sing N N 13 A4C CD8 HD81 sing N N 14 A4C CD8 HD82 sing N N 15 A4C CD8 HD83 sing N N 16 A4C CD7 HD71 sing N N 17 A4C CD7 HD72 sing N N 18 A4C CD7 HD73 sing N N 19 A4C C4 C3 doub Y N 20 A4C C4 C12 sing Y N 21 A4C C3 C2 sing Y N 22 A4C C3 H3 sing N N 23 A4C C2 C1 doub Y N 24 A4C C2 H2 sing N N 25 A4C C12 C11 sing Y N 26 A4C C12 N10 doub Y N 27 A4C C11 C1 sing Y N 28 A4C C11 C9 doub Y N 29 A4C C1 H1 sing N N 30 A4C N10 C14 sing Y N 31 A4C C14 C5 doub Y N 32 A4C C14 C13 sing Y N 33 A4C C5 C6 sing Y N 34 A4C C5 H5 sing N N 35 A4C C6 C7 doub Y N 36 A4C C6 H6 sing N N 37 A4C C7 C8 sing Y N 38 A4C C7 H7 sing N N 39 A4C C13 C8 doub Y N 40 A4C C13 C9 sing Y N 41 A4C C8 H8 sing N N 42 A4C C9 N9 sing N N 43 A4C N9 CX1 sing N N 44 A4C N9 HN9 sing N N 45 A4C CX1 CX2 sing N N 46 A4C CX1 HX11 sing N N 47 A4C CX1 HX12 sing N N 48 A4C CX2 CX3 sing N N 49 A4C CX2 HX21 sing N N 50 A4C CX2 HX22 sing N N 51 A4C CX3 CX6 sing N N 52 A4C CX3 HX31 sing N N 53 A4C CX3 HX32 sing N N 54 A4C OD2 CD4 doub N N 55 A4C CD4 ND3 sing N N 56 A4C CD4 C25 sing N N 57 A4C ND3 CD5 sing N N 58 A4C ND3 HND3 sing N N 59 A4C CD5 CD6 sing N N 60 A4C CD5 HD51 sing N N 61 A4C CD5 HD52 sing N N 62 A4C CD6 ND4 sing N N 63 A4C CD6 HD61 sing N N 64 A4C CD6 HD62 sing N N 65 A4C ND4 CD0 sing N N 66 A4C ND4 CD9 sing N N 67 A4C CD0 HD01 sing N N 68 A4C CD0 HD02 sing N N 69 A4C CD0 HD03 sing N N 70 A4C CD9 HD91 sing N N 71 A4C CD9 HD92 sing N N 72 A4C CD9 HD93 sing N N 73 A4C C25 C26 sing Y N 74 A4C C25 C27 doub Y N 75 A4C C26 C15 doub Y N 76 A4C C26 H26 sing N N 77 A4C C15 C17 sing Y N 78 A4C C15 H15 sing N N 79 A4C C27 C16 sing Y N 80 A4C C27 N12 sing Y N 81 A4C C16 C17 doub Y N 82 A4C C16 C24 sing Y N 83 A4C C17 H17 sing N N 84 A4C N12 C18 doub Y N 85 A4C C18 C19 sing Y N 86 A4C C18 C22 sing Y N 87 A4C C19 C20 doub Y N 88 A4C C19 H19 sing N N 89 A4C C20 C21 sing Y N 90 A4C C20 H20 sing N N 91 A4C C21 C23 doub Y N 92 A4C C21 H21 sing N N 93 A4C C22 C23 sing Y N 94 A4C C22 C24 doub Y N 95 A4C C23 H23 sing N N 96 A4C C24 N11 sing N N 97 A4C N11 CX4 sing N N 98 A4C N11 HN11 sing N N 99 A4C CX4 CX5 sing N N 100 A4C CX4 HX41 sing N N 101 A4C CX4 HX42 sing N N 102 A4C CX5 CX6 sing N N 103 A4C CX5 HX51 sing N N 104 A4C CX5 HX52 sing N N 105 A4C CX6 HX61 sing N N 106 A4C CX6 HX62 sing N N 107 DA OP3 P sing N N 108 DA OP3 HOP3 sing N N 109 DA P OP1 doub N N 110 DA P OP2 sing N N 111 DA P "O5'" sing N N 112 DA OP2 HOP2 sing N N 113 DA "O5'" "C5'" sing N N 114 DA "C5'" "C4'" sing N N 115 DA "C5'" "H5'" sing N N 116 DA "C5'" "H5''" sing N N 117 DA "C4'" "O4'" sing N N 118 DA "C4'" "C3'" sing N N 119 DA "C4'" "H4'" sing N N 120 DA "O4'" "C1'" sing N N 121 DA "C3'" "O3'" sing N N 122 DA "C3'" "C2'" sing N N 123 DA "C3'" "H3'" sing N N 124 DA "O3'" "HO3'" sing N N 125 DA "C2'" "C1'" sing N N 126 DA "C2'" "H2'" sing N N 127 DA "C2'" "H2''" sing N N 128 DA "C1'" N9 sing N N 129 DA "C1'" "H1'" sing N N 130 DA N9 C8 sing Y N 131 DA N9 C4 sing Y N 132 DA C8 N7 doub Y N 133 DA C8 H8 sing N N 134 DA N7 C5 sing Y N 135 DA C5 C6 sing Y N 136 DA C5 C4 doub Y N 137 DA C6 N6 sing N N 138 DA C6 N1 doub Y N 139 DA N6 H61 sing N N 140 DA N6 H62 sing N N 141 DA N1 C2 sing Y N 142 DA C2 N3 doub Y N 143 DA C2 H2 sing N N 144 DA N3 C4 sing Y N 145 DC OP3 P sing N N 146 DC OP3 HOP3 sing N N 147 DC P OP1 doub N N 148 DC P OP2 sing N N 149 DC P "O5'" sing N N 150 DC OP2 HOP2 sing N N 151 DC "O5'" "C5'" sing N N 152 DC "C5'" "C4'" sing N N 153 DC "C5'" "H5'" sing N N 154 DC "C5'" "H5''" sing N N 155 DC "C4'" "O4'" sing N N 156 DC "C4'" "C3'" sing N N 157 DC "C4'" "H4'" sing N N 158 DC "O4'" "C1'" sing N N 159 DC "C3'" "O3'" sing N N 160 DC "C3'" "C2'" sing N N 161 DC "C3'" "H3'" sing N N 162 DC "O3'" "HO3'" sing N N 163 DC "C2'" "C1'" sing N N 164 DC "C2'" "H2'" sing N N 165 DC "C2'" "H2''" sing N N 166 DC "C1'" N1 sing N N 167 DC "C1'" "H1'" sing N N 168 DC N1 C2 sing N N 169 DC N1 C6 sing N N 170 DC C2 O2 doub N N 171 DC C2 N3 sing N N 172 DC N3 C4 doub N N 173 DC C4 N4 sing N N 174 DC C4 C5 sing N N 175 DC N4 H41 sing N N 176 DC N4 H42 sing N N 177 DC C5 C6 doub N N 178 DC C5 H5 sing N N 179 DC C6 H6 sing N N 180 DG OP3 P sing N N 181 DG OP3 HOP3 sing N N 182 DG P OP1 doub N N 183 DG P OP2 sing N N 184 DG P "O5'" sing N N 185 DG OP2 HOP2 sing N N 186 DG "O5'" "C5'" sing N N 187 DG "C5'" "C4'" sing N N 188 DG "C5'" "H5'" sing N N 189 DG "C5'" "H5''" sing N N 190 DG "C4'" "O4'" sing N N 191 DG "C4'" "C3'" sing N N 192 DG "C4'" "H4'" sing N N 193 DG "O4'" "C1'" sing N N 194 DG "C3'" "O3'" sing N N 195 DG "C3'" "C2'" sing N N 196 DG "C3'" "H3'" sing N N 197 DG "O3'" "HO3'" sing N N 198 DG "C2'" "C1'" sing N N 199 DG "C2'" "H2'" sing N N 200 DG "C2'" "H2''" sing N N 201 DG "C1'" N9 sing N N 202 DG "C1'" "H1'" sing N N 203 DG N9 C8 sing Y N 204 DG N9 C4 sing Y N 205 DG C8 N7 doub Y N 206 DG C8 H8 sing N N 207 DG N7 C5 sing Y N 208 DG C5 C6 sing N N 209 DG C5 C4 doub Y N 210 DG C6 O6 doub N N 211 DG C6 N1 sing N N 212 DG N1 C2 sing N N 213 DG N1 H1 sing N N 214 DG C2 N2 sing N N 215 DG C2 N3 doub N N 216 DG N2 H21 sing N N 217 DG N2 H22 sing N N 218 DG N3 C4 sing N N 219 DT OP3 P sing N N 220 DT OP3 HOP3 sing N N 221 DT P OP1 doub N N 222 DT P OP2 sing N N 223 DT P "O5'" sing N N 224 DT OP2 HOP2 sing N N 225 DT "O5'" "C5'" sing N N 226 DT "C5'" "C4'" sing N N 227 DT "C5'" "H5'" sing N N 228 DT "C5'" "H5''" sing N N 229 DT "C4'" "O4'" sing N N 230 DT "C4'" "C3'" sing N N 231 DT "C4'" "H4'" sing N N 232 DT "O4'" "C1'" sing N N 233 DT "C3'" "O3'" sing N N 234 DT "C3'" "C2'" sing N N 235 DT "C3'" "H3'" sing N N 236 DT "O3'" "HO3'" sing N N 237 DT "C2'" "C1'" sing N N 238 DT "C2'" "H2'" sing N N 239 DT "C2'" "H2''" sing N N 240 DT "C1'" N1 sing N N 241 DT "C1'" "H1'" sing N N 242 DT N1 C2 sing N N 243 DT N1 C6 sing N N 244 DT C2 O2 doub N N 245 DT C2 N3 sing N N 246 DT N3 C4 sing N N 247 DT N3 H3 sing N N 248 DT C4 O4 doub N N 249 DT C4 C5 sing N N 250 DT C5 C7 sing N N 251 DT C5 C6 doub N N 252 DT C7 H71 sing N N 253 DT C7 H72 sing N N 254 DT C7 H73 sing N N 255 DT C6 H6 sing N N 256 HOH O H1 sing N N 257 HOH O H2 sing N N 258 SPM N1 C2 sing N N 259 SPM N1 HN11 sing N N 260 SPM N1 HN12 sing N N 261 SPM C2 C3 sing N N 262 SPM C2 H21 sing N N 263 SPM C2 H22 sing N N 264 SPM C3 C4 sing N N 265 SPM C3 H31 sing N N 266 SPM C3 H32 sing N N 267 SPM C4 N5 sing N N 268 SPM C4 H41 sing N N 269 SPM C4 H42 sing N N 270 SPM N5 C6 sing N N 271 SPM N5 HN5 sing N N 272 SPM C6 C7 sing N N 273 SPM C6 H61 sing N N 274 SPM C6 H62 sing N N 275 SPM C7 C8 sing N N 276 SPM C7 H71 sing N N 277 SPM C7 H72 sing N N 278 SPM C8 C9 sing N N 279 SPM C8 H81 sing N N 280 SPM C8 H82 sing N N 281 SPM C9 N10 sing N N 282 SPM C9 H91 sing N N 283 SPM C9 H92 sing N N 284 SPM N10 C11 sing N N 285 SPM N10 HN0 sing N N 286 SPM C11 C12 sing N N 287 SPM C11 H111 sing N N 288 SPM C11 H112 sing N N 289 SPM C12 C13 sing N N 290 SPM C12 H121 sing N N 291 SPM C12 H122 sing N N 292 SPM C13 N14 sing N N 293 SPM C13 H131 sing N N 294 SPM C13 H132 sing N N 295 SPM N14 HN41 sing N N 296 SPM N14 HN42 sing N N 297 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2GWA 'double helix' 2GWA 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 10 1_555 -1.190 0.481 -0.072 3.150 -19.000 27.092 1 A_DT1:DA10_B A 1 ? B 10 ? ? ? 1 A DC 2 1_555 B DG 9 1_555 0.416 -0.359 -0.103 10.513 -18.077 -6.236 2 A_DC2:DG9_B A 2 ? B 9 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 0.685 -0.105 0.038 -0.542 1.194 -6.038 3 A_DG3:DC8_B A 3 ? B 8 ? 19 1 1 A DG 4 1_555 B DC 7 1_555 -1.052 -0.779 -0.259 -1.855 -14.521 -8.048 4 A_DG4:DC7_B A 4 ? B 7 ? 19 1 1 A DT 5 1_555 B DA 6 1_555 0.448 -0.419 -0.125 -9.558 -3.549 -8.863 5 A_DT5:DA6_B A 5 ? B 6 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 10 1_555 A DC 2 1_555 B DG 9 1_555 -0.475 2.952 2.988 8.571 9.037 49.657 2.809 1.133 3.323 10.570 -10.025 51.099 1 AA_DT1DC2:DG9DA10_BB A 1 ? B 10 ? A 2 ? B 9 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 0.341 2.782 3.764 -3.828 -3.940 48.231 3.724 -0.744 3.505 -4.803 4.667 48.524 2 AA_DC2DG3:DC8DG9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A DG 3 1_555 B DC 8 1_555 A DG 4 1_555 B DC 7 1_555 -0.982 1.337 3.401 -2.567 13.088 25.461 -0.710 1.314 3.711 27.426 5.378 28.692 3 AA_DG3DG4:DC7DC8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A DG 4 1_555 B DC 7 1_555 A DT 5 1_555 B DA 6 1_555 0.243 0.037 3.488 -1.121 -1.625 42.556 0.225 -0.454 3.477 -2.238 1.544 42.599 4 AA_DG4DT5:DA6DC7_BB A 4 ? B 7 ? A 5 ? B 6 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "9,9'-(HEXANE-1,6-DIYLDIIMINO)BIS{N-[2-(DIMETHYLAMINO)ETHYL]ACRIDINE-4-CARBOXAMIDE}" A4C 3 SPERMINE SPM 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1NQS _pdbx_initial_refinement_model.details 'PDB ENTRY 1NQS' #