data_2H27 # _entry.id 2H27 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2H27 pdb_00002h27 10.2210/pdb2h27/pdb NDB PD0813 ? ? RCSB RCSB037836 ? ? WWPDB D_1000037836 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-22 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_validate_close_contact 2 4 'Structure model' software 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_ref_seq_dif 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_1' 2 4 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_2' 3 4 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_1' 4 4 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 5 5 'Structure model' '_database_2.pdbx_DOI' 6 5 'Structure model' '_database_2.pdbx_database_accession' 7 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 5 'Structure model' '_struct_ref_seq_dif.details' 9 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 10 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 11 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 2H27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-05-18 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lane, W.J.' 1 'Darst, S.A.' 2 # _citation.id primary _citation.title 'The structural basis for promoter -35 element recognition by the group IV sigma factors.' _citation.journal_abbrev 'Plos Biol.' _citation.journal_volume 4 _citation.page_first e269 _citation.page_last e269 _citation.year 2006 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1544-9173 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16903784 _citation.pdbx_database_id_DOI 10.1371/journal.pbio.0040269 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lane, W.J.' 1 ? primary 'Darst, S.A.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*CP*GP*GP*AP*AP*CP*TP*TP*CP*G)-3'" 3623.368 2 ? ? ? 'SigmaE -35 Concensus DNA Template Strand' 2 polymer syn "5'-D(*C*CP*GP*AP*AP*GP*TP*TP*CP*CP*GP*G)-3'" 3663.392 2 ? ? ? 'SigmaE -35 Concensus DNA Non-Template Strand' 3 polymer man 'RNA polymerase Sigma E factor' 8438.787 2 ? ? 'Region 4' ? 4 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 5 water nat water 18.015 136 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Sigma-24 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DC)(DG)(DG)(DA)(DA)(DC)(DT)(DT)(DC)(DG)' CCCGGAACTTCG B,E ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DG)(DA)(DA)(DG)(DT)(DT)(DC)(DC)(DG)(DG)' CCGAAGTTCCGG C,F ? 3 'polypeptide(L)' no no GSHMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIRR GSHMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIRR A,D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DC n 1 4 DG n 1 5 DG n 1 6 DA n 1 7 DA n 1 8 DC n 1 9 DT n 1 10 DT n 1 11 DC n 1 12 DG n 2 1 DC n 2 2 DC n 2 3 DG n 2 4 DA n 2 5 DA n 2 6 DG n 2 7 DT n 2 8 DT n 2 9 DC n 2 10 DC n 2 11 DG n 2 12 DG n 3 1 GLY n 3 2 SER n 3 3 HIS n 3 4 MET n 3 5 LEU n 3 6 SER n 3 7 GLU n 3 8 GLU n 3 9 LEU n 3 10 ARG n 3 11 GLN n 3 12 ILE n 3 13 VAL n 3 14 PHE n 3 15 ARG n 3 16 THR n 3 17 ILE n 3 18 GLU n 3 19 SER n 3 20 LEU n 3 21 PRO n 3 22 GLU n 3 23 ASP n 3 24 LEU n 3 25 ARG n 3 26 MET n 3 27 ALA n 3 28 ILE n 3 29 THR n 3 30 LEU n 3 31 ARG n 3 32 GLU n 3 33 LEU n 3 34 ASP n 3 35 GLY n 3 36 LEU n 3 37 SER n 3 38 TYR n 3 39 GLU n 3 40 GLU n 3 41 ILE n 3 42 ALA n 3 43 ALA n 3 44 ILE n 3 45 MET n 3 46 ASP n 3 47 CYS n 3 48 PRO n 3 49 VAL n 3 50 GLY n 3 51 THR n 3 52 VAL n 3 53 ARG n 3 54 SER n 3 55 ARG n 3 56 ILE n 3 57 PHE n 3 58 ARG n 3 59 ALA n 3 60 ARG n 3 61 GLU n 3 62 ALA n 3 63 ILE n 3 64 ASP n 3 65 ASN n 3 66 LYS n 3 67 VAL n 3 68 GLN n 3 69 PRO n 3 70 LEU n 3 71 ILE n 3 72 ARG n 3 73 ARG n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene rpoE _entity_src_gen.gene_src_species 'Escherichia coli' _entity_src_gen.gene_src_strain K-12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli K12' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pWJL3 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'HPLC Purified' 2 1 sample ? ? ? ? ? 'HPLC Purified' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C B . n A 1 2 DC 2 2 2 DC C B . n A 1 3 DC 3 3 3 DC C B . n A 1 4 DG 4 4 4 DG G B . n A 1 5 DG 5 5 5 DG G B . n A 1 6 DA 6 6 6 DA A B . n A 1 7 DA 7 7 7 DA A B . n A 1 8 DC 8 8 8 DC C B . n A 1 9 DT 9 9 9 DT T B . n A 1 10 DT 10 10 10 DT T B . n A 1 11 DC 11 11 11 DC C B . n A 1 12 DG 12 12 12 DG G B . n B 2 1 DC 1 14 ? ? ? C . n B 2 2 DC 2 15 15 DC C C . n B 2 3 DG 3 16 16 DG G C . n B 2 4 DA 4 17 17 DA A C . n B 2 5 DA 5 18 18 DA A C . n B 2 6 DG 6 19 19 DG G C . n B 2 7 DT 7 20 20 DT T C . n B 2 8 DT 8 21 21 DT T C . n B 2 9 DC 9 22 22 DC C C . n B 2 10 DC 10 23 23 DC C C . n B 2 11 DG 11 24 24 DG G C . n B 2 12 DG 12 25 25 DG G C . n C 1 1 DC 1 1 1 DC C E . n C 1 2 DC 2 2 2 DC C E . n C 1 3 DC 3 3 3 DC C E . n C 1 4 DG 4 4 4 DG G E . n C 1 5 DG 5 5 5 DG G E . n C 1 6 DA 6 6 6 DA A E . n C 1 7 DA 7 7 7 DA A E . n C 1 8 DC 8 8 8 DC C E . n C 1 9 DT 9 9 9 DT T E . n C 1 10 DT 10 10 10 DT T E . n C 1 11 DC 11 11 11 DC C E . n C 1 12 DG 12 12 12 DG G E . n D 2 1 DC 1 14 ? ? ? F . n D 2 2 DC 2 15 15 DC C F . n D 2 3 DG 3 16 16 DG G F . n D 2 4 DA 4 17 17 DA A F . n D 2 5 DA 5 18 18 DA A F . n D 2 6 DG 6 19 19 DG G F . n D 2 7 DT 7 20 20 DT T F . n D 2 8 DT 8 21 21 DT T F . n D 2 9 DC 9 22 22 DC C F . n D 2 10 DC 10 23 23 DC C F . n D 2 11 DG 11 24 24 DG G F . n D 2 12 DG 12 25 25 DG G F . n E 3 1 GLY 1 8 ? ? ? A . n E 3 2 SER 2 9 9 SER SER A . n E 3 3 HIS 3 10 10 HIS HIS A . n E 3 4 MET 4 122 122 MET MET A . n E 3 5 LEU 5 123 123 LEU LEU A . n E 3 6 SER 6 124 124 SER SER A . n E 3 7 GLU 7 125 125 GLU GLU A . n E 3 8 GLU 8 126 126 GLU GLU A . n E 3 9 LEU 9 127 127 LEU LEU A . n E 3 10 ARG 10 128 128 ARG ARG A . n E 3 11 GLN 11 129 129 GLN GLN A . n E 3 12 ILE 12 130 130 ILE ILE A . n E 3 13 VAL 13 131 131 VAL VAL A . n E 3 14 PHE 14 132 132 PHE PHE A . n E 3 15 ARG 15 133 133 ARG ARG A . n E 3 16 THR 16 134 134 THR THR A . n E 3 17 ILE 17 135 135 ILE ILE A . n E 3 18 GLU 18 136 136 GLU GLU A . n E 3 19 SER 19 137 137 SER SER A . n E 3 20 LEU 20 138 138 LEU LEU A . n E 3 21 PRO 21 139 139 PRO PRO A . n E 3 22 GLU 22 140 140 GLU GLU A . n E 3 23 ASP 23 141 141 ASP ASP A . n E 3 24 LEU 24 142 142 LEU LEU A . n E 3 25 ARG 25 143 143 ARG ARG A . n E 3 26 MET 26 144 144 MET MET A . n E 3 27 ALA 27 145 145 ALA ALA A . n E 3 28 ILE 28 146 146 ILE ILE A . n E 3 29 THR 29 147 147 THR THR A . n E 3 30 LEU 30 148 148 LEU LEU A . n E 3 31 ARG 31 149 149 ARG ARG A . n E 3 32 GLU 32 150 150 GLU GLU A . n E 3 33 LEU 33 151 151 LEU LEU A . n E 3 34 ASP 34 152 152 ASP ASP A . n E 3 35 GLY 35 153 153 GLY GLY A . n E 3 36 LEU 36 154 154 LEU LEU A . n E 3 37 SER 37 155 155 SER SER A . n E 3 38 TYR 38 156 156 TYR TYR A . n E 3 39 GLU 39 157 157 GLU GLU A . n E 3 40 GLU 40 158 158 GLU GLU A . n E 3 41 ILE 41 159 159 ILE ILE A . n E 3 42 ALA 42 160 160 ALA ALA A . n E 3 43 ALA 43 161 161 ALA ALA A . n E 3 44 ILE 44 162 162 ILE ILE A . n E 3 45 MET 45 163 163 MET MET A . n E 3 46 ASP 46 164 164 ASP ASP A . n E 3 47 CYS 47 165 165 CYS CYS A . n E 3 48 PRO 48 166 166 PRO PRO A . n E 3 49 VAL 49 167 167 VAL VAL A . n E 3 50 GLY 50 168 168 GLY GLY A . n E 3 51 THR 51 169 169 THR THR A . n E 3 52 VAL 52 170 170 VAL VAL A . n E 3 53 ARG 53 171 171 ARG ARG A . n E 3 54 SER 54 172 172 SER SER A . n E 3 55 ARG 55 173 173 ARG ARG A . n E 3 56 ILE 56 174 174 ILE ILE A . n E 3 57 PHE 57 175 175 PHE PHE A . n E 3 58 ARG 58 176 176 ARG ARG A . n E 3 59 ALA 59 177 177 ALA ALA A . n E 3 60 ARG 60 178 178 ARG ARG A . n E 3 61 GLU 61 179 179 GLU GLU A . n E 3 62 ALA 62 180 180 ALA ALA A . n E 3 63 ILE 63 181 181 ILE ILE A . n E 3 64 ASP 64 182 182 ASP ASP A . n E 3 65 ASN 65 183 183 ASN ASN A . n E 3 66 LYS 66 184 184 LYS LYS A . n E 3 67 VAL 67 185 185 VAL VAL A . n E 3 68 GLN 68 186 186 GLN GLN A . n E 3 69 PRO 69 187 187 PRO PRO A . n E 3 70 LEU 70 188 188 LEU LEU A . n E 3 71 ILE 71 189 189 ILE ILE A . n E 3 72 ARG 72 190 190 ARG ARG A . n E 3 73 ARG 73 191 ? ? ? A . n F 3 1 GLY 1 8 ? ? ? D . n F 3 2 SER 2 9 ? ? ? D . n F 3 3 HIS 3 10 ? ? ? D . n F 3 4 MET 4 122 122 MET MET D . n F 3 5 LEU 5 123 123 LEU LEU D . n F 3 6 SER 6 124 124 SER SER D . n F 3 7 GLU 7 125 125 GLU GLU D . n F 3 8 GLU 8 126 126 GLU GLU D . n F 3 9 LEU 9 127 127 LEU LEU D . n F 3 10 ARG 10 128 128 ARG ARG D . n F 3 11 GLN 11 129 129 GLN GLN D . n F 3 12 ILE 12 130 130 ILE ILE D . n F 3 13 VAL 13 131 131 VAL VAL D . n F 3 14 PHE 14 132 132 PHE PHE D . n F 3 15 ARG 15 133 133 ARG ARG D . n F 3 16 THR 16 134 134 THR THR D . n F 3 17 ILE 17 135 135 ILE ILE D . n F 3 18 GLU 18 136 136 GLU GLU D . n F 3 19 SER 19 137 137 SER SER D . n F 3 20 LEU 20 138 138 LEU LEU D . n F 3 21 PRO 21 139 139 PRO PRO D . n F 3 22 GLU 22 140 140 GLU GLU D . n F 3 23 ASP 23 141 141 ASP ASP D . n F 3 24 LEU 24 142 142 LEU LEU D . n F 3 25 ARG 25 143 143 ARG ARG D . n F 3 26 MET 26 144 144 MET MET D . n F 3 27 ALA 27 145 145 ALA ALA D . n F 3 28 ILE 28 146 146 ILE ILE D . n F 3 29 THR 29 147 147 THR THR D . n F 3 30 LEU 30 148 148 LEU LEU D . n F 3 31 ARG 31 149 149 ARG ARG D . n F 3 32 GLU 32 150 150 GLU GLU D . n F 3 33 LEU 33 151 151 LEU LEU D . n F 3 34 ASP 34 152 152 ASP ASP D . n F 3 35 GLY 35 153 153 GLY GLY D . n F 3 36 LEU 36 154 154 LEU LEU D . n F 3 37 SER 37 155 155 SER SER D . n F 3 38 TYR 38 156 156 TYR TYR D . n F 3 39 GLU 39 157 157 GLU GLU D . n F 3 40 GLU 40 158 158 GLU GLU D . n F 3 41 ILE 41 159 159 ILE ILE D . n F 3 42 ALA 42 160 160 ALA ALA D . n F 3 43 ALA 43 161 161 ALA ALA D . n F 3 44 ILE 44 162 162 ILE ILE D . n F 3 45 MET 45 163 163 MET MET D . n F 3 46 ASP 46 164 164 ASP ASP D . n F 3 47 CYS 47 165 165 CYS CYS D . n F 3 48 PRO 48 166 166 PRO PRO D . n F 3 49 VAL 49 167 167 VAL VAL D . n F 3 50 GLY 50 168 168 GLY GLY D . n F 3 51 THR 51 169 169 THR THR D . n F 3 52 VAL 52 170 170 VAL VAL D . n F 3 53 ARG 53 171 171 ARG ARG D . n F 3 54 SER 54 172 172 SER SER D . n F 3 55 ARG 55 173 173 ARG ARG D . n F 3 56 ILE 56 174 174 ILE ILE D . n F 3 57 PHE 57 175 175 PHE PHE D . n F 3 58 ARG 58 176 176 ARG ARG D . n F 3 59 ALA 59 177 177 ALA ALA D . n F 3 60 ARG 60 178 178 ARG ARG D . n F 3 61 GLU 61 179 179 GLU GLU D . n F 3 62 ALA 62 180 180 ALA ALA D . n F 3 63 ILE 63 181 181 ILE ILE D . n F 3 64 ASP 64 182 182 ASP ASP D . n F 3 65 ASN 65 183 183 ASN ASN D . n F 3 66 LYS 66 184 184 LYS LYS D . n F 3 67 VAL 67 185 185 VAL VAL D . n F 3 68 GLN 68 186 186 GLN GLN D . n F 3 69 PRO 69 187 187 PRO PRO D . n F 3 70 LEU 70 188 188 LEU LEU D . n F 3 71 ILE 71 189 189 ILE ILE D . n F 3 72 ARG 72 190 190 ARG ARG D . n F 3 73 ARG 73 191 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 MPD 1 1 1 MPD MPD D . H 5 HOH 1 15 15 HOH HOH B . H 5 HOH 2 16 16 HOH HOH B . H 5 HOH 3 26 26 HOH HOH B . H 5 HOH 4 37 37 HOH HOH B . H 5 HOH 5 38 38 HOH HOH B . H 5 HOH 6 58 58 HOH HOH B . H 5 HOH 7 64 64 HOH HOH B . H 5 HOH 8 94 94 HOH HOH B . H 5 HOH 9 95 95 HOH HOH B . H 5 HOH 10 97 97 HOH HOH B . H 5 HOH 11 105 105 HOH HOH B . H 5 HOH 12 123 123 HOH HOH B . H 5 HOH 13 132 132 HOH HOH B . I 5 HOH 1 5 5 HOH HOH C . I 5 HOH 2 12 12 HOH HOH C . I 5 HOH 3 66 66 HOH HOH C . I 5 HOH 4 70 70 HOH HOH C . I 5 HOH 5 96 96 HOH HOH C . I 5 HOH 6 103 103 HOH HOH C . I 5 HOH 7 106 106 HOH HOH C . I 5 HOH 8 109 109 HOH HOH C . I 5 HOH 9 115 115 HOH HOH C . I 5 HOH 10 122 122 HOH HOH C . J 5 HOH 1 13 2 HOH HOH E . J 5 HOH 2 14 3 HOH HOH E . J 5 HOH 3 15 6 HOH HOH E . J 5 HOH 4 16 7 HOH HOH E . J 5 HOH 5 17 46 HOH HOH E . J 5 HOH 6 18 61 HOH HOH E . J 5 HOH 7 19 63 HOH HOH E . J 5 HOH 8 20 74 HOH HOH E . J 5 HOH 9 21 79 HOH HOH E . J 5 HOH 10 22 82 HOH HOH E . J 5 HOH 11 23 83 HOH HOH E . J 5 HOH 12 24 92 HOH HOH E . J 5 HOH 13 25 93 HOH HOH E . J 5 HOH 14 26 110 HOH HOH E . J 5 HOH 15 27 113 HOH HOH E . K 5 HOH 1 26 13 HOH HOH F . K 5 HOH 2 27 20 HOH HOH F . K 5 HOH 3 28 33 HOH HOH F . K 5 HOH 4 29 35 HOH HOH F . K 5 HOH 5 30 73 HOH HOH F . K 5 HOH 6 31 88 HOH HOH F . K 5 HOH 7 32 98 HOH HOH F . K 5 HOH 8 33 101 HOH HOH F . K 5 HOH 9 34 116 HOH HOH F . K 5 HOH 10 35 121 HOH HOH F . L 5 HOH 1 192 1 HOH HOH A . L 5 HOH 2 193 4 HOH HOH A . L 5 HOH 3 194 9 HOH HOH A . L 5 HOH 4 195 10 HOH HOH A . L 5 HOH 5 196 11 HOH HOH A . L 5 HOH 6 197 17 HOH HOH A . L 5 HOH 7 198 18 HOH HOH A . L 5 HOH 8 199 19 HOH HOH A . L 5 HOH 9 200 21 HOH HOH A . L 5 HOH 10 201 22 HOH HOH A . L 5 HOH 11 202 23 HOH HOH A . L 5 HOH 12 203 24 HOH HOH A . L 5 HOH 13 204 27 HOH HOH A . L 5 HOH 14 205 28 HOH HOH A . L 5 HOH 15 206 29 HOH HOH A . L 5 HOH 16 207 36 HOH HOH A . L 5 HOH 17 208 40 HOH HOH A . L 5 HOH 18 209 41 HOH HOH A . L 5 HOH 19 210 43 HOH HOH A . L 5 HOH 20 211 44 HOH HOH A . L 5 HOH 21 212 45 HOH HOH A . L 5 HOH 22 213 51 HOH HOH A . L 5 HOH 23 214 52 HOH HOH A . L 5 HOH 24 215 55 HOH HOH A . L 5 HOH 25 216 56 HOH HOH A . L 5 HOH 26 217 57 HOH HOH A . L 5 HOH 27 218 60 HOH HOH A . L 5 HOH 28 219 65 HOH HOH A . L 5 HOH 29 220 67 HOH HOH A . L 5 HOH 30 221 68 HOH HOH A . L 5 HOH 31 222 69 HOH HOH A . L 5 HOH 32 223 76 HOH HOH A . L 5 HOH 33 224 77 HOH HOH A . L 5 HOH 34 225 78 HOH HOH A . L 5 HOH 35 226 80 HOH HOH A . L 5 HOH 36 227 84 HOH HOH A . L 5 HOH 37 228 85 HOH HOH A . L 5 HOH 38 229 86 HOH HOH A . L 5 HOH 39 230 87 HOH HOH A . L 5 HOH 40 231 90 HOH HOH A . L 5 HOH 41 232 91 HOH HOH A . L 5 HOH 42 233 99 HOH HOH A . L 5 HOH 43 234 100 HOH HOH A . L 5 HOH 44 235 107 HOH HOH A . L 5 HOH 45 236 108 HOH HOH A . L 5 HOH 46 237 111 HOH HOH A . L 5 HOH 47 238 127 HOH HOH A . L 5 HOH 48 239 128 HOH HOH A . L 5 HOH 49 240 131 HOH HOH A . L 5 HOH 50 241 133 HOH HOH A . L 5 HOH 51 242 134 HOH HOH A . L 5 HOH 52 243 136 HOH HOH A . M 5 HOH 1 192 8 HOH HOH D . M 5 HOH 2 193 14 HOH HOH D . M 5 HOH 3 194 25 HOH HOH D . M 5 HOH 4 195 30 HOH HOH D . M 5 HOH 5 196 31 HOH HOH D . M 5 HOH 6 197 32 HOH HOH D . M 5 HOH 7 198 34 HOH HOH D . M 5 HOH 8 199 39 HOH HOH D . M 5 HOH 9 200 42 HOH HOH D . M 5 HOH 10 201 47 HOH HOH D . M 5 HOH 11 202 48 HOH HOH D . M 5 HOH 12 203 49 HOH HOH D . M 5 HOH 13 204 50 HOH HOH D . M 5 HOH 14 205 53 HOH HOH D . M 5 HOH 15 206 54 HOH HOH D . M 5 HOH 16 207 59 HOH HOH D . M 5 HOH 17 208 62 HOH HOH D . M 5 HOH 18 209 71 HOH HOH D . M 5 HOH 19 210 72 HOH HOH D . M 5 HOH 20 211 75 HOH HOH D . M 5 HOH 21 212 81 HOH HOH D . M 5 HOH 22 213 89 HOH HOH D . M 5 HOH 23 214 102 HOH HOH D . M 5 HOH 24 215 104 HOH HOH D . M 5 HOH 25 216 112 HOH HOH D . M 5 HOH 26 217 114 HOH HOH D . M 5 HOH 27 218 117 HOH HOH D . M 5 HOH 28 219 118 HOH HOH D . M 5 HOH 29 220 119 HOH HOH D . M 5 HOH 30 221 120 HOH HOH D . M 5 HOH 31 222 124 HOH HOH D . M 5 HOH 32 223 125 HOH HOH D . M 5 HOH 33 224 126 HOH HOH D . M 5 HOH 34 225 129 HOH HOH D . M 5 HOH 35 226 130 HOH HOH D . M 5 HOH 36 227 135 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C DC 15 ? P ? B DC 2 P 2 1 Y 1 C DC 15 ? OP1 ? B DC 2 OP1 3 1 Y 1 C DC 15 ? OP2 ? B DC 2 OP2 4 1 Y 1 F DC 15 ? P ? D DC 2 P 5 1 Y 1 F DC 15 ? OP1 ? D DC 2 OP1 6 1 Y 1 F DC 15 ? OP2 ? D DC 2 OP2 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 MOLREP . ? other 'A. Vagin' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 3 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 4 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 ADSC . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 7 # _cell.entry_id 2H27 _cell.length_a 55.009 _cell.length_b 68.709 _cell.length_c 61.133 _cell.angle_alpha 90.00 _cell.angle_beta 101.25 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2H27 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2H27 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.53 _exptl_crystal.density_percent_sol 65.16 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details '5% v/v MPD, 0.04M magnesium chloride, 0.05M sodium-cacodylate, VAPOR DIFFUSION, HANGING DROP, temperature 277K, pH 6.00' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 'magnesium chloride' ? ? ? 1 3 1 sodium-cacodylate ? ? ? 1 4 1 H2O ? ? ? 1 5 2 MPD ? ? ? 1 6 2 'magnesium chloride' ? ? ? 1 7 2 sodium-cacodylate ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2005-02-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI 111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00004 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X25 _diffrn_source.pdbx_wavelength 1.00004 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2H27 _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 2.300 _reflns.number_obs 19011 _reflns.number_all ? _reflns.percent_possible_obs 97.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 96.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2H27 _refine.ls_number_reflns_obs 18308 _refine.ls_number_reflns_all 19943 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 91.8 _refine.ls_R_factor_obs 0.241 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.241 _refine.ls_R_factor_R_free 0.253 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.000 _refine.ls_number_reflns_R_free 1801 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 38.33 _refine.aniso_B[1][1] -3.27000 _refine.aniso_B[2][2] -8.41100 _refine.aniso_B[3][3] 11.68100 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 7.15400 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol 37.75 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1130 _refine_hist.pdbx_number_atoms_nucleic_acid 928 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 144 _refine_hist.number_atoms_total 2202 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.40 _refine_ls_shell.number_reflns_R_work 1832 _refine_ls_shell.R_factor_R_work 0.3306 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3582 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 206 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 CNS_TOPPAR:PROTEIN_REP.PARAM ? 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:DNA-RNA.PARAM ? 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:WATER.PARAM ? 'X-RAY DIFFRACTION' 4 CNS_TOPPAR:ION.PARAM ? 'X-RAY DIFFRACTION' 5 CNS_TOPPAR:MPD.PAR ? 'X-RAY DIFFRACTION' # _struct.entry_id 2H27 _struct.title 'Crystal Structure of Escherichia coli SigmaE Region 4 Bound to its-35 Element DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2H27 _struct_keywords.pdbx_keywords transferase/DNA _struct_keywords.text 'Protein-DNA Complex, Helix-Turn-Helix, Double Helix, transferase-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 5 ? M N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP RPOE_ECOLI P0AGB6 3 122 ? ? 2 PDB 2H27 2H27 1 ? ? ? 3 PDB 2H27 2H27 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2H27 A 4 ? 73 ? P0AGB6 122 ? 191 ? 122 191 2 1 2H27 D 4 ? 73 ? P0AGB6 122 ? 191 ? 122 191 3 2 2H27 B 1 ? 12 ? 2H27 1 ? 12 ? 1 12 4 3 2H27 C 1 ? 12 ? 2H27 14 ? 25 ? 14 25 5 2 2H27 E 1 ? 12 ? 2H27 1 ? 12 ? 1 12 6 3 2H27 F 1 ? 12 ? 2H27 14 ? 25 ? 14 25 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2H27 GLY A 1 ? UNP P0AGB6 ? ? 'cloning artifact' 8 1 1 2H27 SER A 2 ? UNP P0AGB6 ? ? 'cloning artifact' 9 2 1 2H27 HIS A 3 ? UNP P0AGB6 ? ? 'cloning artifact' 10 3 2 2H27 GLY D 1 ? UNP P0AGB6 ? ? 'cloning artifact' 8 4 2 2H27 SER D 2 ? UNP P0AGB6 ? ? 'cloning artifact' 9 5 2 2H27 HIS D 3 ? UNP P0AGB6 ? ? 'cloning artifact' 10 6 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? trimeric 3 2 author_defined_assembly ? trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,H,I,L 2 1 C,D,F,G,J,K,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.details _struct_biol.pdbx_parent_biol_id 1 ;The asymmetric unit contains two biological units. Each biological unit contains one protein part consisting of SigmaE Region 4 and one DNA part consisting of double-stranded DNA. ; ? 2 ? ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET E 4 ? SER E 19 ? MET A 122 SER A 137 1 ? 16 HELX_P HELX_P2 2 PRO E 21 ? LEU E 33 ? PRO A 139 LEU A 151 1 ? 13 HELX_P HELX_P3 3 SER E 37 ? MET E 45 ? SER A 155 MET A 163 1 ? 9 HELX_P HELX_P4 4 PRO E 48 ? GLN E 68 ? PRO A 166 GLN A 186 1 ? 21 HELX_P HELX_P5 5 PRO E 69 ? ILE E 71 ? PRO A 187 ILE A 189 5 ? 3 HELX_P HELX_P6 6 MET F 4 ? LEU F 20 ? MET D 122 LEU D 138 1 ? 17 HELX_P HELX_P7 7 PRO F 21 ? LEU F 33 ? PRO D 139 LEU D 151 1 ? 13 HELX_P HELX_P8 8 SER F 37 ? ASP F 46 ? SER D 155 ASP D 164 1 ? 10 HELX_P HELX_P9 9 PRO F 48 ? ARG F 72 ? PRO D 166 ARG D 190 1 ? 25 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? C DC 3 OP1 ? ? ? 1_555 G MPD . O2 ? ? E DC 3 D MPD 1 1_555 ? ? ? ? ? ? ? 1.988 ? ? covale2 covale none ? C DG 4 OP1 ? ? ? 1_555 G MPD . CM ? ? E DG 4 D MPD 1 1_555 ? ? ? ? ? ? ? 1.926 ? ? hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 12 N1 ? ? B DC 2 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 12 O6 ? ? B DC 2 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 12 N2 ? ? B DC 2 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 11 N1 ? ? B DC 3 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 11 O6 ? ? B DC 3 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 11 N2 ? ? B DC 3 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 10 N3 ? ? B DG 4 C DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 10 O2 ? ? B DG 4 C DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 10 N4 ? ? B DG 4 C DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 9 N3 ? ? B DG 5 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 9 O2 ? ? B DG 5 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 9 N4 ? ? B DG 5 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 8 N3 ? ? B DA 6 C DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 8 O4 ? ? B DA 6 C DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 7 N3 ? ? B DA 7 C DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 7 O4 ? ? B DA 7 C DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 6 N1 ? ? B DC 8 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 6 O6 ? ? B DC 8 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 6 N2 ? ? B DC 8 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 5 N1 ? ? B DT 9 C DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 5 N6 ? ? B DT 9 C DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 4 N1 ? ? B DT 10 C DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 4 N6 ? ? B DT 10 C DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 3 N1 ? ? B DC 11 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 3 O6 ? ? B DC 11 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 3 N2 ? ? B DC 11 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 12 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 12 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 12 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 12 N1 ? ? E DC 2 F DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 12 O6 ? ? E DC 2 F DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 12 N2 ? ? E DC 2 F DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DC 3 N3 ? ? ? 1_555 D DG 11 N1 ? ? E DC 3 F DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DC 3 N4 ? ? ? 1_555 D DG 11 O6 ? ? E DC 3 F DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DC 3 O2 ? ? ? 1_555 D DG 11 N2 ? ? E DC 3 F DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DC 10 N3 ? ? E DG 4 F DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DC 10 O2 ? ? E DG 4 F DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DC 10 N4 ? ? E DG 4 F DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D DC 9 N3 ? ? E DG 5 F DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D DC 9 O2 ? ? E DG 5 F DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D DC 9 N4 ? ? E DG 5 F DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DA 6 N1 ? ? ? 1_555 D DT 8 N3 ? ? E DA 6 F DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DA 6 N6 ? ? ? 1_555 D DT 8 O4 ? ? E DA 6 F DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DA 7 N1 ? ? ? 1_555 D DT 7 N3 ? ? E DA 7 F DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DA 7 N6 ? ? ? 1_555 D DT 7 O4 ? ? E DA 7 F DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DC 8 N3 ? ? ? 1_555 D DG 6 N1 ? ? E DC 8 F DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DC 8 N4 ? ? ? 1_555 D DG 6 O6 ? ? E DC 8 F DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DC 8 O2 ? ? ? 1_555 D DG 6 N2 ? ? E DC 8 F DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DT 9 N3 ? ? ? 1_555 D DA 5 N1 ? ? E DT 9 F DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DT 9 O4 ? ? ? 1_555 D DA 5 N6 ? ? E DT 9 F DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C DT 10 N3 ? ? ? 1_555 D DA 4 N1 ? ? E DT 10 F DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C DT 10 O4 ? ? ? 1_555 D DA 4 N6 ? ? E DT 10 F DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C DC 11 N3 ? ? ? 1_555 D DG 3 N1 ? ? E DC 11 F DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C DC 11 N4 ? ? ? 1_555 D DG 3 O6 ? ? E DC 11 F DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C DC 11 O2 ? ? ? 1_555 D DG 3 N2 ? ? E DC 11 F DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C DG 12 N1 ? ? ? 1_555 D DC 2 N3 ? ? E DG 12 F DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C DG 12 N2 ? ? ? 1_555 D DC 2 O2 ? ? E DG 12 F DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C DG 12 O6 ? ? ? 1_555 D DC 2 N4 ? ? E DG 12 F DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id D _struct_site.pdbx_auth_comp_id MPD _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE MPD D 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP F 23 ? ASP D 141 . ? 1_555 ? 2 AC1 5 ARG F 55 ? ARG D 173 . ? 1_555 ? 3 AC1 5 HOH M . ? HOH D 196 . ? 1_555 ? 4 AC1 5 DC C 3 ? DC E 3 . ? 1_555 ? 5 AC1 5 DG C 4 ? DG E 4 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O F HOH 35 ? ? O D HOH 214 ? ? 1.43 2 1 O C HOH 122 ? ? O A HOH 235 ? ? 1.58 3 1 OE2 A GLU 157 ? ? O A HOH 232 ? ? 1.61 4 1 OE2 A GLU 150 ? ? O A HOH 227 ? ? 1.63 5 1 OP2 E DG 12 ? ? O E HOH 23 ? ? 1.68 6 1 O A HOH 241 ? ? O A HOH 243 ? ? 1.73 7 1 O A HOH 242 ? ? O A HOH 243 ? ? 1.77 8 1 O D HOH 221 ? ? O D HOH 227 ? ? 1.86 9 1 O E HOH 27 ? ? O D HOH 216 ? ? 1.89 10 1 O E HOH 26 ? ? O F HOH 34 ? ? 1.92 11 1 OP2 E DT 9 ? ? O E HOH 22 ? ? 1.95 12 1 O D HOH 223 ? ? O D HOH 224 ? ? 1.95 13 1 OP2 B DG 12 ? ? O B HOH 97 ? ? 1.96 14 1 OE2 D GLU 150 ? ? O D HOH 210 ? ? 1.97 15 1 O C HOH 66 ? ? O C HOH 70 ? ? 1.99 16 1 NH2 D ARG 143 ? ? O D HOH 209 ? ? 2.00 17 1 O B HOH 123 ? ? O C HOH 115 ? ? 2.01 18 1 O A HOH 239 ? ? O D HOH 223 ? ? 2.04 19 1 OG D SER 137 ? ? O D HOH 200 ? ? 2.06 20 1 NE A ARG 178 ? ? O A HOH 227 ? ? 2.09 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 111.24 108.30 2.94 0.30 N 2 1 "O4'" B DG 5 ? ? "C1'" B DG 5 ? ? N9 B DG 5 ? ? 110.25 108.30 1.95 0.30 N 3 1 "O4'" E DC 3 ? ? "C1'" E DC 3 ? ? N1 E DC 3 ? ? 110.84 108.30 2.54 0.30 N 4 1 "C5'" F DG 24 ? ? "C4'" F DG 24 ? ? "C3'" F DG 24 ? ? 101.66 114.10 -12.44 1.80 N 5 1 "C3'" F DG 24 ? ? "C2'" F DG 24 ? ? "C1'" F DG 24 ? ? 96.87 102.40 -5.53 0.80 N 6 1 "O4'" F DG 24 ? ? "C1'" F DG 24 ? ? N9 F DG 24 ? ? 113.07 108.30 4.77 0.30 N 7 1 NE A ARG 133 ? ? CZ A ARG 133 ? ? NH1 A ARG 133 ? ? 123.96 120.30 3.66 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id PRO _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 187 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -66.27 _pdbx_validate_torsion.psi 5.17 # _pdbx_phasing_MR.entry_id 2H27 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor 0.576 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc 0.487 _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.000 _pdbx_phasing_MR.d_res_low_rotation 19.990 _pdbx_phasing_MR.d_res_high_translation 3.000 _pdbx_phasing_MR.d_res_low_translation 19.990 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _pdbx_phasing_dm_shell.d_res_high 2.300 _pdbx_phasing_dm_shell.d_res_low 20.000 _pdbx_phasing_dm_shell.delta_phi_final 0.205 _pdbx_phasing_dm_shell.delta_phi_initial ? _pdbx_phasing_dm_shell.fom_acentric ? _pdbx_phasing_dm_shell.fom_centric ? _pdbx_phasing_dm_shell.fom 0.224 _pdbx_phasing_dm_shell.reflns_acentric ? _pdbx_phasing_dm_shell.reflns_centric ? _pdbx_phasing_dm_shell.reflns 18308 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C DC 14 ? B DC 1 2 1 Y 1 F DC 14 ? D DC 1 3 1 Y 1 A GLY 8 ? E GLY 1 4 1 Y 1 A ARG 191 ? E ARG 73 5 1 Y 1 D GLY 8 ? F GLY 1 6 1 Y 1 D SER 9 ? F SER 2 7 1 Y 1 D HIS 10 ? F HIS 3 8 1 Y 1 D ARG 191 ? F ARG 73 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 MPD C1 C N N 393 MPD C2 C N N 394 MPD O2 O N N 395 MPD CM C N N 396 MPD C3 C N N 397 MPD C4 C N S 398 MPD O4 O N N 399 MPD C5 C N N 400 MPD H11 H N N 401 MPD H12 H N N 402 MPD H13 H N N 403 MPD HO2 H N N 404 MPD HM1 H N N 405 MPD HM2 H N N 406 MPD HM3 H N N 407 MPD H31 H N N 408 MPD H32 H N N 409 MPD H4 H N N 410 MPD HO4 H N N 411 MPD H51 H N N 412 MPD H52 H N N 413 MPD H53 H N N 414 PHE N N N N 415 PHE CA C N S 416 PHE C C N N 417 PHE O O N N 418 PHE CB C N N 419 PHE CG C Y N 420 PHE CD1 C Y N 421 PHE CD2 C Y N 422 PHE CE1 C Y N 423 PHE CE2 C Y N 424 PHE CZ C Y N 425 PHE OXT O N N 426 PHE H H N N 427 PHE H2 H N N 428 PHE HA H N N 429 PHE HB2 H N N 430 PHE HB3 H N N 431 PHE HD1 H N N 432 PHE HD2 H N N 433 PHE HE1 H N N 434 PHE HE2 H N N 435 PHE HZ H N N 436 PHE HXT H N N 437 PRO N N N N 438 PRO CA C N S 439 PRO C C N N 440 PRO O O N N 441 PRO CB C N N 442 PRO CG C N N 443 PRO CD C N N 444 PRO OXT O N N 445 PRO H H N N 446 PRO HA H N N 447 PRO HB2 H N N 448 PRO HB3 H N N 449 PRO HG2 H N N 450 PRO HG3 H N N 451 PRO HD2 H N N 452 PRO HD3 H N N 453 PRO HXT H N N 454 SER N N N N 455 SER CA C N S 456 SER C C N N 457 SER O O N N 458 SER CB C N N 459 SER OG O N N 460 SER OXT O N N 461 SER H H N N 462 SER H2 H N N 463 SER HA H N N 464 SER HB2 H N N 465 SER HB3 H N N 466 SER HG H N N 467 SER HXT H N N 468 THR N N N N 469 THR CA C N S 470 THR C C N N 471 THR O O N N 472 THR CB C N R 473 THR OG1 O N N 474 THR CG2 C N N 475 THR OXT O N N 476 THR H H N N 477 THR H2 H N N 478 THR HA H N N 479 THR HB H N N 480 THR HG1 H N N 481 THR HG21 H N N 482 THR HG22 H N N 483 THR HG23 H N N 484 THR HXT H N N 485 TYR N N N N 486 TYR CA C N S 487 TYR C C N N 488 TYR O O N N 489 TYR CB C N N 490 TYR CG C Y N 491 TYR CD1 C Y N 492 TYR CD2 C Y N 493 TYR CE1 C Y N 494 TYR CE2 C Y N 495 TYR CZ C Y N 496 TYR OH O N N 497 TYR OXT O N N 498 TYR H H N N 499 TYR H2 H N N 500 TYR HA H N N 501 TYR HB2 H N N 502 TYR HB3 H N N 503 TYR HD1 H N N 504 TYR HD2 H N N 505 TYR HE1 H N N 506 TYR HE2 H N N 507 TYR HH H N N 508 TYR HXT H N N 509 VAL N N N N 510 VAL CA C N S 511 VAL C C N N 512 VAL O O N N 513 VAL CB C N N 514 VAL CG1 C N N 515 VAL CG2 C N N 516 VAL OXT O N N 517 VAL H H N N 518 VAL H2 H N N 519 VAL HA H N N 520 VAL HB H N N 521 VAL HG11 H N N 522 VAL HG12 H N N 523 VAL HG13 H N N 524 VAL HG21 H N N 525 VAL HG22 H N N 526 VAL HG23 H N N 527 VAL HXT H N N 528 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 MPD C1 C2 sing N N 386 MPD C1 H11 sing N N 387 MPD C1 H12 sing N N 388 MPD C1 H13 sing N N 389 MPD C2 O2 sing N N 390 MPD C2 CM sing N N 391 MPD C2 C3 sing N N 392 MPD O2 HO2 sing N N 393 MPD CM HM1 sing N N 394 MPD CM HM2 sing N N 395 MPD CM HM3 sing N N 396 MPD C3 C4 sing N N 397 MPD C3 H31 sing N N 398 MPD C3 H32 sing N N 399 MPD C4 O4 sing N N 400 MPD C4 C5 sing N N 401 MPD C4 H4 sing N N 402 MPD O4 HO4 sing N N 403 MPD C5 H51 sing N N 404 MPD C5 H52 sing N N 405 MPD C5 H53 sing N N 406 PHE N CA sing N N 407 PHE N H sing N N 408 PHE N H2 sing N N 409 PHE CA C sing N N 410 PHE CA CB sing N N 411 PHE CA HA sing N N 412 PHE C O doub N N 413 PHE C OXT sing N N 414 PHE CB CG sing N N 415 PHE CB HB2 sing N N 416 PHE CB HB3 sing N N 417 PHE CG CD1 doub Y N 418 PHE CG CD2 sing Y N 419 PHE CD1 CE1 sing Y N 420 PHE CD1 HD1 sing N N 421 PHE CD2 CE2 doub Y N 422 PHE CD2 HD2 sing N N 423 PHE CE1 CZ doub Y N 424 PHE CE1 HE1 sing N N 425 PHE CE2 CZ sing Y N 426 PHE CE2 HE2 sing N N 427 PHE CZ HZ sing N N 428 PHE OXT HXT sing N N 429 PRO N CA sing N N 430 PRO N CD sing N N 431 PRO N H sing N N 432 PRO CA C sing N N 433 PRO CA CB sing N N 434 PRO CA HA sing N N 435 PRO C O doub N N 436 PRO C OXT sing N N 437 PRO CB CG sing N N 438 PRO CB HB2 sing N N 439 PRO CB HB3 sing N N 440 PRO CG CD sing N N 441 PRO CG HG2 sing N N 442 PRO CG HG3 sing N N 443 PRO CD HD2 sing N N 444 PRO CD HD3 sing N N 445 PRO OXT HXT sing N N 446 SER N CA sing N N 447 SER N H sing N N 448 SER N H2 sing N N 449 SER CA C sing N N 450 SER CA CB sing N N 451 SER CA HA sing N N 452 SER C O doub N N 453 SER C OXT sing N N 454 SER CB OG sing N N 455 SER CB HB2 sing N N 456 SER CB HB3 sing N N 457 SER OG HG sing N N 458 SER OXT HXT sing N N 459 THR N CA sing N N 460 THR N H sing N N 461 THR N H2 sing N N 462 THR CA C sing N N 463 THR CA CB sing N N 464 THR CA HA sing N N 465 THR C O doub N N 466 THR C OXT sing N N 467 THR CB OG1 sing N N 468 THR CB CG2 sing N N 469 THR CB HB sing N N 470 THR OG1 HG1 sing N N 471 THR CG2 HG21 sing N N 472 THR CG2 HG22 sing N N 473 THR CG2 HG23 sing N N 474 THR OXT HXT sing N N 475 TYR N CA sing N N 476 TYR N H sing N N 477 TYR N H2 sing N N 478 TYR CA C sing N N 479 TYR CA CB sing N N 480 TYR CA HA sing N N 481 TYR C O doub N N 482 TYR C OXT sing N N 483 TYR CB CG sing N N 484 TYR CB HB2 sing N N 485 TYR CB HB3 sing N N 486 TYR CG CD1 doub Y N 487 TYR CG CD2 sing Y N 488 TYR CD1 CE1 sing Y N 489 TYR CD1 HD1 sing N N 490 TYR CD2 CE2 doub Y N 491 TYR CD2 HD2 sing N N 492 TYR CE1 CZ doub Y N 493 TYR CE1 HE1 sing N N 494 TYR CE2 CZ sing Y N 495 TYR CE2 HE2 sing N N 496 TYR CZ OH sing N N 497 TYR OH HH sing N N 498 TYR OXT HXT sing N N 499 VAL N CA sing N N 500 VAL N H sing N N 501 VAL N H2 sing N N 502 VAL CA C sing N N 503 VAL CA CB sing N N 504 VAL CA HA sing N N 505 VAL C O doub N N 506 VAL C OXT sing N N 507 VAL CB CG1 sing N N 508 VAL CB CG2 sing N N 509 VAL CB HB sing N N 510 VAL CG1 HG11 sing N N 511 VAL CG1 HG12 sing N N 512 VAL CG1 HG13 sing N N 513 VAL CG2 HG21 sing N N 514 VAL CG2 HG22 sing N N 515 VAL CG2 HG23 sing N N 516 VAL OXT HXT sing N N 517 # _ndb_struct_conf_na.entry_id 2H27 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 B DG 12 1_555 0.207 -0.230 0.178 -4.853 -9.446 -1.818 1 B_DC2:DG25_C B 2 ? C 25 ? 19 1 1 A DC 3 1_555 B DG 11 1_555 -0.042 -0.346 0.631 -0.417 -17.861 -6.171 2 B_DC3:DG24_C B 3 ? C 24 ? 19 1 1 A DG 4 1_555 B DC 10 1_555 -0.177 -0.214 0.222 -1.715 -14.188 -0.633 3 B_DG4:DC23_C B 4 ? C 23 ? 19 1 1 A DG 5 1_555 B DC 9 1_555 -0.229 -0.151 -0.226 3.213 -8.027 2.943 4 B_DG5:DC22_C B 5 ? C 22 ? 19 1 1 A DA 6 1_555 B DT 8 1_555 0.166 -0.035 -0.062 8.881 -13.921 0.826 5 B_DA6:DT21_C B 6 ? C 21 ? 20 1 1 A DA 7 1_555 B DT 7 1_555 0.101 -0.031 0.111 12.524 -13.199 0.749 6 B_DA7:DT20_C B 7 ? C 20 ? 20 1 1 A DC 8 1_555 B DG 6 1_555 0.058 -0.009 0.245 4.055 -11.677 1.056 7 B_DC8:DG19_C B 8 ? C 19 ? 19 1 1 A DT 9 1_555 B DA 5 1_555 0.086 -0.091 0.073 0.770 -8.029 4.005 8 B_DT9:DA18_C B 9 ? C 18 ? 20 1 1 A DT 10 1_555 B DA 4 1_555 -0.092 -0.032 0.091 -6.440 -12.188 2.087 9 B_DT10:DA17_C B 10 ? C 17 ? 20 1 1 A DC 11 1_555 B DG 3 1_555 0.171 -0.036 0.343 -7.040 -11.546 3.266 10 B_DC11:DG16_C B 11 ? C 16 ? 19 1 1 A DG 12 1_555 B DC 2 1_555 -0.227 -0.145 -0.429 -10.636 -14.558 2.584 11 B_DG12:DC15_C B 12 ? C 15 ? 19 1 1 C DC 2 1_555 D DG 12 1_555 0.231 -0.119 0.121 -6.628 -7.153 -0.533 12 E_DC2:DG25_F E 2 ? F 25 ? 19 1 1 C DC 3 1_555 D DG 11 1_555 0.326 -0.137 0.313 7.402 -21.392 -2.332 13 E_DC3:DG24_F E 3 ? F 24 ? 19 1 1 C DG 4 1_555 D DC 10 1_555 -0.192 0.028 0.206 -5.643 -12.010 -2.389 14 E_DG4:DC23_F E 4 ? F 23 ? 19 1 1 C DG 5 1_555 D DC 9 1_555 -0.177 -0.110 -0.389 0.353 -1.387 0.561 15 E_DG5:DC22_F E 5 ? F 22 ? 19 1 1 C DA 6 1_555 D DT 8 1_555 -0.030 -0.106 -0.096 5.650 -5.731 3.473 16 E_DA6:DT21_F E 6 ? F 21 ? 20 1 1 C DA 7 1_555 D DT 7 1_555 0.111 0.039 0.213 13.967 -9.654 -1.346 17 E_DA7:DT20_F E 7 ? F 20 ? 20 1 1 C DC 8 1_555 D DG 6 1_555 -0.013 0.005 0.008 5.770 -10.829 3.344 18 E_DC8:DG19_F E 8 ? F 19 ? 19 1 1 C DT 9 1_555 D DA 5 1_555 0.047 -0.054 0.050 -0.158 -7.750 4.992 19 E_DT9:DA18_F E 9 ? F 18 ? 20 1 1 C DT 10 1_555 D DA 4 1_555 -0.114 -0.035 -0.079 -5.140 -10.434 0.591 20 E_DT10:DA17_F E 10 ? F 17 ? 20 1 1 C DC 11 1_555 D DG 3 1_555 -0.291 0.230 0.201 -10.448 -9.726 4.927 21 E_DC11:DG16_F E 11 ? F 16 ? 19 1 1 C DG 12 1_555 D DC 2 1_555 -0.181 -0.228 -0.673 -5.566 -9.026 5.337 22 E_DG12:DC15_F E 12 ? F 15 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 B DG 12 1_555 A DC 3 1_555 B DG 11 1_555 1.101 -0.534 3.232 -3.089 4.282 26.466 -2.189 -3.113 2.965 9.237 6.663 26.979 1 BB_DC2DC3:DG24DG25_CC B 2 ? C 25 ? B 3 ? C 24 ? 1 A DC 3 1_555 B DG 11 1_555 A DG 4 1_555 B DC 10 1_555 -1.423 -0.188 3.191 1.250 1.929 37.364 -0.537 2.376 3.130 3.007 -1.949 37.433 2 BB_DC3DG4:DC23DG24_CC B 3 ? C 24 ? B 4 ? C 23 ? 1 A DG 4 1_555 B DC 10 1_555 A DG 5 1_555 B DC 9 1_555 1.020 0.777 3.322 3.574 2.836 30.799 0.883 -1.188 3.471 5.303 -6.683 31.127 3 BB_DG4DG5:DC22DC23_CC B 4 ? C 23 ? B 5 ? C 22 ? 1 A DG 5 1_555 B DC 9 1_555 A DA 6 1_555 B DT 8 1_555 -0.378 0.655 3.310 -2.258 3.975 35.558 0.479 0.282 3.378 6.475 3.678 35.841 4 BB_DG5DA6:DT21DC22_CC B 5 ? C 22 ? B 6 ? C 21 ? 1 A DA 6 1_555 B DT 8 1_555 A DA 7 1_555 B DT 7 1_555 -0.458 -0.157 3.123 -1.855 -3.875 37.574 0.237 0.478 3.141 -5.992 2.868 37.810 5 BB_DA6DA7:DT20DT21_CC B 6 ? C 21 ? B 7 ? C 20 ? 1 A DA 7 1_555 B DT 7 1_555 A DC 8 1_555 B DG 6 1_555 0.637 -0.956 3.514 -2.181 1.360 34.714 -1.818 -1.418 3.430 2.276 3.649 34.806 6 BB_DA7DC8:DG19DT20_CC B 7 ? C 20 ? B 8 ? C 19 ? 1 A DC 8 1_555 B DG 6 1_555 A DT 9 1_555 B DA 5 1_555 -0.065 -0.862 3.365 2.040 -0.766 34.070 -1.343 0.443 3.374 -1.306 -3.477 34.138 7 BB_DC8DT9:DA18DG19_CC B 8 ? C 19 ? B 9 ? C 18 ? 1 A DT 9 1_555 B DA 5 1_555 A DT 10 1_555 B DA 4 1_555 -0.111 -0.471 3.341 1.888 -2.006 35.625 -0.471 0.459 3.352 -3.273 -3.081 35.728 8 BB_DT9DT10:DA17DA18_CC B 9 ? C 18 ? B 10 ? C 17 ? 1 A DT 10 1_555 B DA 4 1_555 A DC 11 1_555 B DG 3 1_555 0.223 -0.091 3.248 -0.407 -1.236 40.012 0.008 -0.372 3.247 -1.806 0.595 40.032 9 BB_DT10DC11:DG16DA17_CC B 10 ? C 17 ? B 11 ? C 16 ? 1 A DC 11 1_555 B DG 3 1_555 A DG 12 1_555 B DC 2 1_555 -0.129 0.787 3.439 5.165 6.971 35.896 0.233 0.953 3.476 11.112 -8.233 36.896 10 BB_DC11DG12:DC15DG16_CC B 11 ? C 16 ? B 12 ? C 15 ? 1 C DC 2 1_555 D DG 12 1_555 C DC 3 1_555 D DG 11 1_555 0.834 -0.317 2.971 -1.485 6.315 29.667 -1.740 -1.860 2.801 12.151 2.858 30.353 11 EE_DC2DC3:DG24DG25_FF E 2 ? F 25 ? E 3 ? F 24 ? 1 C DC 3 1_555 D DG 11 1_555 C DG 4 1_555 D DC 10 1_555 -1.610 -0.290 3.552 -3.148 1.071 34.969 -0.657 2.147 3.668 1.778 5.224 35.122 12 EE_DC3DG4:DC23DG24_FF E 3 ? F 24 ? E 4 ? F 23 ? 1 C DG 4 1_555 D DC 10 1_555 C DG 5 1_555 D DC 9 1_555 1.057 0.788 3.278 5.732 1.372 34.261 1.102 -0.864 3.432 2.308 -9.641 34.750 13 EE_DG4DG5:DC22DC23_FF E 4 ? F 23 ? E 5 ? F 22 ? 1 C DG 5 1_555 D DC 9 1_555 C DA 6 1_555 D DT 8 1_555 -0.400 0.853 3.267 -5.556 5.826 31.164 0.462 -0.305 3.387 10.624 10.131 32.163 14 EE_DG5DA6:DT21DC22_FF E 5 ? F 22 ? E 6 ? F 21 ? 1 C DA 6 1_555 D DT 8 1_555 C DA 7 1_555 D DT 7 1_555 -0.710 -0.266 3.039 -2.388 -4.886 39.186 0.146 0.786 3.085 -7.242 3.539 39.547 15 EE_DA6DA7:DT20DT21_FF E 6 ? F 21 ? E 7 ? F 20 ? 1 C DA 7 1_555 D DT 7 1_555 C DC 8 1_555 D DG 6 1_555 0.605 -0.778 3.532 0.314 1.532 35.002 -1.540 -0.954 3.501 2.545 -0.521 35.036 16 EE_DA7DC8:DG19DT20_FF E 7 ? F 20 ? E 8 ? F 19 ? 1 C DC 8 1_555 D DG 6 1_555 C DT 9 1_555 D DA 5 1_555 -0.213 -1.048 3.472 0.165 1.971 34.574 -2.080 0.385 3.407 3.314 -0.277 34.629 17 EE_DC8DT9:DA18DG19_FF E 8 ? F 19 ? E 9 ? F 18 ? 1 C DT 9 1_555 D DA 5 1_555 C DT 10 1_555 D DA 4 1_555 -0.073 -0.306 3.290 1.533 -4.453 35.082 0.159 0.349 3.297 -7.347 -2.529 35.387 18 EE_DT9DT10:DA17DA18_FF E 9 ? F 18 ? E 10 ? F 17 ? 1 C DT 10 1_555 D DA 4 1_555 C DC 11 1_555 D DG 3 1_555 0.497 -0.222 3.407 0.795 1.116 37.126 -0.504 -0.669 3.408 1.753 -1.247 37.151 19 EE_DT10DC11:DG16DA17_FF E 10 ? F 17 ? E 11 ? F 16 ? 1 C DC 11 1_555 D DG 3 1_555 C DG 12 1_555 D DC 2 1_555 -0.238 0.991 3.368 3.271 4.463 35.597 0.941 0.870 3.429 7.247 -5.310 36.010 20 EE_DC11DG12:DC15DG16_FF E 11 ? F 16 ? E 12 ? F 15 ? # _atom_sites.entry_id 2H27 _atom_sites.fract_transf_matrix[1][1] 0.018179 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003616 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014554 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016678 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_