data_2HBO # _entry.id 2HBO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HBO pdb_00002hbo 10.2210/pdb2hbo/pdb RCSB RCSB038167 ? ? WWPDB D_1000038167 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 366861 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2HBO _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-06-14 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of hypothetical protein (np_422103.1) from Caulobacter crescentus at 1.85 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 2HBO _cell.length_a 53.440 _cell.length_b 53.440 _cell.length_c 99.090 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HBO _symmetry.Int_Tables_number 94 _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hypothetical protein (np_422103.1)' 17780.152 1 ? ? ? ? 2 non-polymer syn '2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL' 354.436 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 4 water nat water 18.015 64 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)SDDLTDAQTAAIPEGFSQLNWSRGFGRQIGPLFEHREGPGQARLAFRVEEHHTNGLGNCHGG(MSE)L(MSE)S FAD(MSE)AWGRIISLQKSYSWVTVRL(MSE)CDFLSGAKLGDWVEGEGELISEED(MSE)LFTVRGRIWAGERTLITGT GVFKALSARKPRPGELAYKEEA ; _entity_poly.pdbx_seq_one_letter_code_can ;GMSDDLTDAQTAAIPEGFSQLNWSRGFGRQIGPLFEHREGPGQARLAFRVEEHHTNGLGNCHGGMLMSFADMAWGRIISL QKSYSWVTVRLMCDFLSGAKLGDWVEGEGELISEEDMLFTVRGRIWAGERTLITGTGVFKALSARKPRPGELAYKEEA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 366861 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 SER n 1 4 ASP n 1 5 ASP n 1 6 LEU n 1 7 THR n 1 8 ASP n 1 9 ALA n 1 10 GLN n 1 11 THR n 1 12 ALA n 1 13 ALA n 1 14 ILE n 1 15 PRO n 1 16 GLU n 1 17 GLY n 1 18 PHE n 1 19 SER n 1 20 GLN n 1 21 LEU n 1 22 ASN n 1 23 TRP n 1 24 SER n 1 25 ARG n 1 26 GLY n 1 27 PHE n 1 28 GLY n 1 29 ARG n 1 30 GLN n 1 31 ILE n 1 32 GLY n 1 33 PRO n 1 34 LEU n 1 35 PHE n 1 36 GLU n 1 37 HIS n 1 38 ARG n 1 39 GLU n 1 40 GLY n 1 41 PRO n 1 42 GLY n 1 43 GLN n 1 44 ALA n 1 45 ARG n 1 46 LEU n 1 47 ALA n 1 48 PHE n 1 49 ARG n 1 50 VAL n 1 51 GLU n 1 52 GLU n 1 53 HIS n 1 54 HIS n 1 55 THR n 1 56 ASN n 1 57 GLY n 1 58 LEU n 1 59 GLY n 1 60 ASN n 1 61 CYS n 1 62 HIS n 1 63 GLY n 1 64 GLY n 1 65 MSE n 1 66 LEU n 1 67 MSE n 1 68 SER n 1 69 PHE n 1 70 ALA n 1 71 ASP n 1 72 MSE n 1 73 ALA n 1 74 TRP n 1 75 GLY n 1 76 ARG n 1 77 ILE n 1 78 ILE n 1 79 SER n 1 80 LEU n 1 81 GLN n 1 82 LYS n 1 83 SER n 1 84 TYR n 1 85 SER n 1 86 TRP n 1 87 VAL n 1 88 THR n 1 89 VAL n 1 90 ARG n 1 91 LEU n 1 92 MSE n 1 93 CYS n 1 94 ASP n 1 95 PHE n 1 96 LEU n 1 97 SER n 1 98 GLY n 1 99 ALA n 1 100 LYS n 1 101 LEU n 1 102 GLY n 1 103 ASP n 1 104 TRP n 1 105 VAL n 1 106 GLU n 1 107 GLY n 1 108 GLU n 1 109 GLY n 1 110 GLU n 1 111 LEU n 1 112 ILE n 1 113 SER n 1 114 GLU n 1 115 GLU n 1 116 ASP n 1 117 MSE n 1 118 LEU n 1 119 PHE n 1 120 THR n 1 121 VAL n 1 122 ARG n 1 123 GLY n 1 124 ARG n 1 125 ILE n 1 126 TRP n 1 127 ALA n 1 128 GLY n 1 129 GLU n 1 130 ARG n 1 131 THR n 1 132 LEU n 1 133 ILE n 1 134 THR n 1 135 GLY n 1 136 THR n 1 137 GLY n 1 138 VAL n 1 139 PHE n 1 140 LYS n 1 141 ALA n 1 142 LEU n 1 143 SER n 1 144 ALA n 1 145 ARG n 1 146 LYS n 1 147 PRO n 1 148 ARG n 1 149 PRO n 1 150 GLY n 1 151 GLU n 1 152 LEU n 1 153 ALA n 1 154 TYR n 1 155 LYS n 1 156 GLU n 1 157 GLU n 1 158 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Caulobacter _entity_src_gen.pdbx_gene_src_gene np_422103.1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Caulobacter vibrioides' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 155892 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9A395_CAUCR _struct_ref.pdbx_db_accession Q9A395 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HBO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 158 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9A395 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 157 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 157 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2HBO GLY A 1 ? UNP Q9A395 ? ? 'expression tag' 0 1 1 2HBO MSE A 2 ? UNP Q9A395 MET 1 'modified residue' 1 2 1 2HBO MSE A 65 ? UNP Q9A395 MET 64 'modified residue' 64 3 1 2HBO MSE A 67 ? UNP Q9A395 MET 66 'modified residue' 66 4 1 2HBO MSE A 72 ? UNP Q9A395 MET 71 'modified residue' 71 5 1 2HBO MSE A 92 ? UNP Q9A395 MET 91 'modified residue' 91 6 1 2HBO MSE A 117 ? UNP Q9A395 MET 116 'modified residue' 116 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PE4 non-polymer . '2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL' 'POLYETHYLENE GLYCOL PEG4000' 'C16 H34 O8' 354.436 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 2 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2HBO # loop_ _exptl_crystal.id _exptl_crystal.density_percent_sol _exptl_crystal.density_Matthews _exptl_crystal.description _exptl_crystal.density_meas _exptl_crystal.F_000 _exptl_crystal.preparation 1 41.08 2.10 ;DATA FROM A SE-MET CONTAINING CRYSTAL IN SPACEGROUP P4(3)2(1)2 WAS USED FOR THE MAD PHASING EXPERIMENTS AT 2.1 ANGSTROMS RESOLUTION. THIS MAD STRUCTURE WAS USE D AS A MOLECULAR REPLACEMENT MODEL TO PHASE THIS STRUCTURE AT 1.85 ANGSTROMS RES OLUTION IN THE P4(2)2(1)2 SPACEGROUP. ; ? ? ? 2 ? ? ;DATA FROM A SE-MET CONTAINING CRYSTAL IN SPACEGROUP P4(3)2(1)2 WAS USED FOR THE MAD PHASING EXPERIMENTS AT 2.1 ANGSTROMS RESOLUTION. THIS MAD STRUCTURE WAS USE D AS A MOLECULAR REPLACEMENT MODEL TO PHASE THIS STRUCTURE AT 1.85 ANGSTROMS RES OLUTION IN THE P4(2)2(1)2 SPACEGROUP. ; ? ? ? # loop_ _exptl_crystal_grow.crystal_id _exptl_crystal_grow.method _exptl_crystal_grow.pH _exptl_crystal_grow.temp _exptl_crystal_grow.pdbx_details _exptl_crystal_grow.temp_details _exptl_crystal_grow.pdbx_pH_range 1 'VAPOR DIFFUSION, SITTING DROP, NANODROP' 6.6 277 '0.2M NH4Formate, 20.0% PEG-3350, No Buffer, pH 6.6, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K' ? . 2 'VAPOR DIFFUSION, SITTING DROP, NANODROP' 4.2 277 '40.0% PEG-300, 0.1M Phosphate Citrate, pH 4.2, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K' ? . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 2 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.details _diffrn_detector.pdbx_collection_date 1 CCD 'MARMOSAIC 325 mm CCD' 'Flat collimating mirror, toroid focusing mirror' 2006-05-14 2 CCD 'ADSC QUANTUM 315' 'Flat mirror (vertical focusing)' 2006-05-08 # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_scattering_type 1 M ? 'SINGLE WAVELENGTH' 1 x-ray 2 M 'Single crystal Si(111) bent monochromator (horizontal focusing)' MAD 2 x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.979008 1.0 3 0.979318 1.0 4 0.918370 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.type _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_synchrotron_site 1 SYNCHROTRON BL9-2 'SSRL BEAMLINE BL9-2' 0.91162 ? SSRL 2 SYNCHROTRON BL11-1 'SSRL BEAMLINE BL11-1' ? '0.979008, 0.979318, 0.918370' SSRL # _reflns.entry_id 2HBO _reflns.d_resolution_high 1.850 _reflns.d_resolution_low 50.000 _reflns.number_obs 12896 _reflns.pdbx_Rmerge_I_obs 0.073 _reflns.pdbx_netI_over_sigmaI 13.700 _reflns.pdbx_chi_squared 0.973 _reflns.pdbx_redundancy 6.800 _reflns.percent_possible_obs 99.800 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.85 1.90 ? ? ? 0.805 ? ? 0.974 5.50 ? 887 100.00 1 1,2 1.90 1.95 ? ? ? 0.6 ? ? 1.037 6.90 ? 900 100.00 2 1,2 1.95 2.00 ? ? ? 0.495 ? ? 1.008 7.10 ? 884 100.00 3 1,2 2.00 2.07 ? ? ? 0.397 ? ? 0.996 7.10 ? 912 100.00 4 1,2 2.07 2.14 ? ? ? 0.317 ? ? 0.919 7.10 ? 904 100.00 5 1,2 2.14 2.23 ? ? ? 0.223 ? ? 0.954 7.10 ? 899 100.00 6 1,2 2.23 2.33 ? ? ? 0.198 ? ? 0.961 7.10 ? 901 100.00 7 1,2 2.33 2.45 ? ? ? 0.161 ? ? 1.077 7.10 ? 909 100.00 8 1,2 2.45 2.61 ? ? ? 0.126 ? ? 0.978 7.10 ? 918 100.00 9 1,2 2.61 2.81 ? ? ? 0.096 ? ? 0.964 7.10 ? 922 100.00 10 1,2 2.81 3.09 ? ? ? 0.07 ? ? 0.923 7.00 ? 920 100.00 11 1,2 3.09 3.54 ? ? ? 0.054 ? ? 1.062 6.90 ? 950 99.90 12 1,2 3.54 4.46 ? ? ? 0.043 ? ? 0.863 6.60 ? 957 99.50 13 1,2 4.46 50.00 ? ? ? 0.052 ? ? 0.896 6.00 ? 1033 98.70 14 1,2 # _refine.entry_id 2HBO _refine.ls_d_res_high 1.850 _refine.ls_d_res_low 28.10 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.760 _refine.ls_number_reflns_obs 12846 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. PEG-3350 HAS BEEN PARTIALLED MODELED AS PE4. 4. THERE ARE SOME POSITIVE DIFFERENCE DENSITIES AROUND PEG THAT SUGGEST THAT PEG MOLECULE MIGHT OCCUPY ALTERNATE CONFORMATIONS WITH PARTIAL OCCUPANCIES. 5. ETHYLENE GLYCOL (EDO) FROM CRYO CONDITION HAS BEEN MODELED. 6. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.208 _refine.ls_R_factor_R_free 0.244 _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 628 _refine.B_iso_mean 36.857 _refine.aniso_B[1][1] -1.750 _refine.aniso_B[2][2] -1.750 _refine.aniso_B[3][3] 3.510 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.946 _refine.pdbx_overall_ESU_R 0.158 _refine.pdbx_overall_ESU_R_Free 0.144 _refine.overall_SU_ML 0.117 _refine.overall_SU_B 8.068 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs 0.21 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1089 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 64 _refine_hist.number_atoms_total 1184 _refine_hist.d_res_high 1.850 _refine_hist.d_res_low 28.10 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1165 0.016 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1094 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1562 1.560 1.952 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2516 0.823 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 147 6.901 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 49 29.090 21.633 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 187 14.465 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11 18.817 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 159 0.084 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1290 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 264 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 212 0.223 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1169 0.203 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 555 0.180 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 716 0.085 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 56 0.143 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 18 0.126 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 75 0.192 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 16 0.128 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 752 1.598 2.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 304 0.297 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1115 2.338 4.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 519 3.382 4.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 444 4.120 6.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.850 _refine_ls_shell.d_res_low 1.898 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.370 _refine_ls_shell.number_reflns_R_work 867 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.298 _refine_ls_shell.R_factor_R_free 0.359 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 38 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 905 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2HBO _struct.title 'Crystal structure of a thioesterase superfamily protein (cc_3309) from caulobacter vibrioides at 1.85 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Thioesterase/thiol ester dehydrase-isomerase fold, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, hydrolase ; _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.entry_id 2HBO # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 26 ? GLY A 32 ? GLY A 25 GLY A 31 1 ? 7 HELX_P HELX_P2 2 GLU A 51 ? THR A 55 ? GLU A 50 THR A 54 5 ? 5 HELX_P HELX_P3 3 HIS A 62 ? SER A 83 ? HIS A 61 SER A 82 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 64 C ? ? ? 1_555 A MSE 65 N ? ? A GLY 63 A MSE 64 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale2 covale both ? A MSE 65 C ? ? ? 1_555 A LEU 66 N ? ? A MSE 64 A LEU 65 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? A LEU 66 C ? ? ? 1_555 A MSE 67 N ? ? A LEU 65 A MSE 66 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale4 covale both ? A MSE 67 C ? ? ? 1_555 A SER 68 N ? ? A MSE 66 A SER 67 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale5 covale both ? A ASP 71 C ? ? ? 1_555 A MSE 72 N ? ? A ASP 70 A MSE 71 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? A MSE 72 C ? ? ? 1_555 A ALA 73 N ? ? A MSE 71 A ALA 72 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale7 covale both ? A LEU 91 C ? ? ? 1_555 A MSE 92 N ? ? A LEU 90 A MSE 91 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale8 covale both ? A MSE 92 C ? ? ? 1_555 A CYS 93 N ? ? A MSE 91 A CYS 92 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale9 covale both ? A ASP 116 C ? ? ? 1_555 A MSE 117 N ? ? A ASP 115 A MSE 116 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale10 covale both ? A MSE 117 C ? ? ? 1_555 A LEU 118 N ? ? A MSE 116 A LEU 117 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 32 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 31 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 33 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 32 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.85 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 18 ? GLN A 20 ? PHE A 17 GLN A 19 A 2 LEU A 34 ? HIS A 37 ? LEU A 33 HIS A 36 A 3 LEU A 46 ? ARG A 49 ? LEU A 45 ARG A 48 A 4 TRP A 104 ? GLU A 115 ? TRP A 103 GLU A 114 A 5 LEU A 118 ? ALA A 127 ? LEU A 117 ALA A 126 A 6 ARG A 130 ? ALA A 144 ? ARG A 129 ALA A 143 A 7 TYR A 84 ? PHE A 95 ? TYR A 83 PHE A 94 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 19 ? N SER A 18 O GLU A 36 ? O GLU A 35 A 2 3 N PHE A 35 ? N PHE A 34 O ALA A 47 ? O ALA A 46 A 3 4 N PHE A 48 ? N PHE A 47 O VAL A 105 ? O VAL A 104 A 4 5 N GLU A 110 ? N GLU A 109 O ARG A 122 ? O ARG A 121 A 5 6 N GLY A 123 ? N GLY A 122 O GLY A 135 ? O GLY A 134 A 6 7 O LYS A 140 ? O LYS A 139 N VAL A 87 ? N VAL A 86 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PE4 158 ? 9 'BINDING SITE FOR RESIDUE PE4 A 158' AC2 Software A EDO 159 ? 5 'BINDING SITE FOR RESIDUE EDO A 159' AC3 Software A EDO 160 ? 5 'BINDING SITE FOR RESIDUE EDO A 160' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 HIS A 62 ? HIS A 61 . ? 2_555 ? 2 AC1 9 GLY A 63 ? GLY A 62 . ? 2_555 ? 3 AC1 9 SER A 85 ? SER A 84 . ? 1_555 ? 4 AC1 9 TRP A 86 ? TRP A 85 . ? 1_555 ? 5 AC1 9 VAL A 87 ? VAL A 86 . ? 1_555 ? 6 AC1 9 THR A 88 ? THR A 87 . ? 1_555 ? 7 AC1 9 ARG A 148 ? ARG A 147 . ? 1_555 ? 8 AC1 9 HOH E . ? HOH A 214 . ? 1_555 ? 9 AC1 9 HOH E . ? HOH A 223 . ? 2_555 ? 10 AC2 5 MSE A 92 ? MSE A 91 . ? 1_555 ? 11 AC2 5 CYS A 93 ? CYS A 92 . ? 1_555 ? 12 AC2 5 ASP A 94 ? ASP A 93 . ? 1_555 ? 13 AC2 5 THR A 134 ? THR A 133 . ? 1_555 ? 14 AC2 5 GLY A 135 ? GLY A 134 . ? 1_555 ? 15 AC3 5 ALA A 13 ? ALA A 12 . ? 1_555 ? 16 AC3 5 ILE A 14 ? ILE A 13 . ? 1_555 ? 17 AC3 5 ARG A 49 ? ARG A 48 . ? 1_555 ? 18 AC3 5 TRP A 104 ? TRP A 103 . ? 1_555 ? 19 AC3 5 HOH E . ? HOH A 207 . ? 1_555 ? # _atom_sites.entry_id 2HBO _atom_sites.fract_transf_matrix[1][1] 0.01871 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01871 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.01009 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 SER 3 2 ? ? ? A . n A 1 4 ASP 4 3 ? ? ? A . n A 1 5 ASP 5 4 ? ? ? A . n A 1 6 LEU 6 5 ? ? ? A . n A 1 7 THR 7 6 ? ? ? A . n A 1 8 ASP 8 7 ? ? ? A . n A 1 9 ALA 9 8 ? ? ? A . n A 1 10 GLN 10 9 ? ? ? A . n A 1 11 THR 11 10 ? ? ? A . n A 1 12 ALA 12 11 ? ? ? A . n A 1 13 ALA 13 12 12 ALA ALA A . n A 1 14 ILE 14 13 13 ILE ILE A . n A 1 15 PRO 15 14 14 PRO PRO A . n A 1 16 GLU 16 15 15 GLU GLU A . n A 1 17 GLY 17 16 16 GLY GLY A . n A 1 18 PHE 18 17 17 PHE PHE A . n A 1 19 SER 19 18 18 SER SER A . n A 1 20 GLN 20 19 19 GLN GLN A . n A 1 21 LEU 21 20 20 LEU LEU A . n A 1 22 ASN 22 21 21 ASN ASN A . n A 1 23 TRP 23 22 22 TRP TRP A . n A 1 24 SER 24 23 23 SER SER A . n A 1 25 ARG 25 24 24 ARG ARG A . n A 1 26 GLY 26 25 25 GLY GLY A . n A 1 27 PHE 27 26 26 PHE PHE A . n A 1 28 GLY 28 27 27 GLY GLY A . n A 1 29 ARG 29 28 28 ARG ARG A . n A 1 30 GLN 30 29 29 GLN GLN A . n A 1 31 ILE 31 30 30 ILE ILE A . n A 1 32 GLY 32 31 31 GLY GLY A . n A 1 33 PRO 33 32 32 PRO PRO A . n A 1 34 LEU 34 33 33 LEU LEU A . n A 1 35 PHE 35 34 34 PHE PHE A . n A 1 36 GLU 36 35 35 GLU GLU A . n A 1 37 HIS 37 36 36 HIS HIS A . n A 1 38 ARG 38 37 37 ARG ARG A . n A 1 39 GLU 39 38 38 GLU GLU A . n A 1 40 GLY 40 39 39 GLY GLY A . n A 1 41 PRO 41 40 40 PRO PRO A . n A 1 42 GLY 42 41 41 GLY GLY A . n A 1 43 GLN 43 42 42 GLN GLN A . n A 1 44 ALA 44 43 43 ALA ALA A . n A 1 45 ARG 45 44 44 ARG ARG A . n A 1 46 LEU 46 45 45 LEU LEU A . n A 1 47 ALA 47 46 46 ALA ALA A . n A 1 48 PHE 48 47 47 PHE PHE A . n A 1 49 ARG 49 48 48 ARG ARG A . n A 1 50 VAL 50 49 49 VAL VAL A . n A 1 51 GLU 51 50 50 GLU GLU A . n A 1 52 GLU 52 51 51 GLU GLU A . n A 1 53 HIS 53 52 52 HIS HIS A . n A 1 54 HIS 54 53 53 HIS HIS A . n A 1 55 THR 55 54 54 THR THR A . n A 1 56 ASN 56 55 55 ASN ASN A . n A 1 57 GLY 57 56 56 GLY GLY A . n A 1 58 LEU 58 57 57 LEU LEU A . n A 1 59 GLY 59 58 58 GLY GLY A . n A 1 60 ASN 60 59 59 ASN ASN A . n A 1 61 CYS 61 60 60 CYS CYS A . n A 1 62 HIS 62 61 61 HIS HIS A . n A 1 63 GLY 63 62 62 GLY GLY A . n A 1 64 GLY 64 63 63 GLY GLY A . n A 1 65 MSE 65 64 64 MSE MSE A . n A 1 66 LEU 66 65 65 LEU LEU A . n A 1 67 MSE 67 66 66 MSE MSE A . n A 1 68 SER 68 67 67 SER SER A . n A 1 69 PHE 69 68 68 PHE PHE A . n A 1 70 ALA 70 69 69 ALA ALA A . n A 1 71 ASP 71 70 70 ASP ASP A . n A 1 72 MSE 72 71 71 MSE MSE A . n A 1 73 ALA 73 72 72 ALA ALA A . n A 1 74 TRP 74 73 73 TRP TRP A . n A 1 75 GLY 75 74 74 GLY GLY A . n A 1 76 ARG 76 75 75 ARG ARG A . n A 1 77 ILE 77 76 76 ILE ILE A . n A 1 78 ILE 78 77 77 ILE ILE A . n A 1 79 SER 79 78 78 SER SER A . n A 1 80 LEU 80 79 79 LEU LEU A . n A 1 81 GLN 81 80 80 GLN GLN A . n A 1 82 LYS 82 81 81 LYS LYS A . n A 1 83 SER 83 82 82 SER SER A . n A 1 84 TYR 84 83 83 TYR TYR A . n A 1 85 SER 85 84 84 SER SER A . n A 1 86 TRP 86 85 85 TRP TRP A . n A 1 87 VAL 87 86 86 VAL VAL A . n A 1 88 THR 88 87 87 THR THR A . n A 1 89 VAL 89 88 88 VAL VAL A . n A 1 90 ARG 90 89 89 ARG ARG A . n A 1 91 LEU 91 90 90 LEU LEU A . n A 1 92 MSE 92 91 91 MSE MSE A . n A 1 93 CYS 93 92 92 CYS CYS A . n A 1 94 ASP 94 93 93 ASP ASP A . n A 1 95 PHE 95 94 94 PHE PHE A . n A 1 96 LEU 96 95 95 LEU LEU A . n A 1 97 SER 97 96 96 SER SER A . n A 1 98 GLY 98 97 97 GLY GLY A . n A 1 99 ALA 99 98 98 ALA ALA A . n A 1 100 LYS 100 99 99 LYS LYS A . n A 1 101 LEU 101 100 100 LEU LEU A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 ASP 103 102 102 ASP ASP A . n A 1 104 TRP 104 103 103 TRP TRP A . n A 1 105 VAL 105 104 104 VAL VAL A . n A 1 106 GLU 106 105 105 GLU GLU A . n A 1 107 GLY 107 106 106 GLY GLY A . n A 1 108 GLU 108 107 107 GLU GLU A . n A 1 109 GLY 109 108 108 GLY GLY A . n A 1 110 GLU 110 109 109 GLU GLU A . n A 1 111 LEU 111 110 110 LEU LEU A . n A 1 112 ILE 112 111 111 ILE ILE A . n A 1 113 SER 113 112 112 SER SER A . n A 1 114 GLU 114 113 113 GLU GLU A . n A 1 115 GLU 115 114 114 GLU GLU A . n A 1 116 ASP 116 115 115 ASP ASP A . n A 1 117 MSE 117 116 116 MSE MSE A . n A 1 118 LEU 118 117 117 LEU LEU A . n A 1 119 PHE 119 118 118 PHE PHE A . n A 1 120 THR 120 119 119 THR THR A . n A 1 121 VAL 121 120 120 VAL VAL A . n A 1 122 ARG 122 121 121 ARG ARG A . n A 1 123 GLY 123 122 122 GLY GLY A . n A 1 124 ARG 124 123 123 ARG ARG A . n A 1 125 ILE 125 124 124 ILE ILE A . n A 1 126 TRP 126 125 125 TRP TRP A . n A 1 127 ALA 127 126 126 ALA ALA A . n A 1 128 GLY 128 127 127 GLY GLY A . n A 1 129 GLU 129 128 128 GLU GLU A . n A 1 130 ARG 130 129 129 ARG ARG A . n A 1 131 THR 131 130 130 THR THR A . n A 1 132 LEU 132 131 131 LEU LEU A . n A 1 133 ILE 133 132 132 ILE ILE A . n A 1 134 THR 134 133 133 THR THR A . n A 1 135 GLY 135 134 134 GLY GLY A . n A 1 136 THR 136 135 135 THR THR A . n A 1 137 GLY 137 136 136 GLY GLY A . n A 1 138 VAL 138 137 137 VAL VAL A . n A 1 139 PHE 139 138 138 PHE PHE A . n A 1 140 LYS 140 139 139 LYS LYS A . n A 1 141 ALA 141 140 140 ALA ALA A . n A 1 142 LEU 142 141 141 LEU LEU A . n A 1 143 SER 143 142 142 SER SER A . n A 1 144 ALA 144 143 143 ALA ALA A . n A 1 145 ARG 145 144 144 ARG ARG A . n A 1 146 LYS 146 145 145 LYS LYS A . n A 1 147 PRO 147 146 146 PRO PRO A . n A 1 148 ARG 148 147 147 ARG ARG A . n A 1 149 PRO 149 148 148 PRO PRO A . n A 1 150 GLY 150 149 149 GLY GLY A . n A 1 151 GLU 151 150 150 GLU GLU A . n A 1 152 LEU 152 151 151 LEU LEU A . n A 1 153 ALA 153 152 152 ALA ALA A . n A 1 154 TYR 154 153 153 TYR TYR A . n A 1 155 LYS 155 154 ? ? ? A . n A 1 156 GLU 156 155 ? ? ? A . n A 1 157 GLU 157 156 ? ? ? A . n A 1 158 ALA 158 157 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PE4 1 158 1 PE4 PE4 A . C 3 EDO 1 159 2 EDO EDO A . D 3 EDO 1 160 3 EDO EDO A . E 4 HOH 1 161 4 HOH HOH A . E 4 HOH 2 162 5 HOH HOH A . E 4 HOH 3 163 6 HOH HOH A . E 4 HOH 4 164 7 HOH HOH A . E 4 HOH 5 165 8 HOH HOH A . E 4 HOH 6 166 9 HOH HOH A . E 4 HOH 7 167 10 HOH HOH A . E 4 HOH 8 168 11 HOH HOH A . E 4 HOH 9 169 12 HOH HOH A . E 4 HOH 10 170 13 HOH HOH A . E 4 HOH 11 171 14 HOH HOH A . E 4 HOH 12 172 15 HOH HOH A . E 4 HOH 13 173 16 HOH HOH A . E 4 HOH 14 174 17 HOH HOH A . E 4 HOH 15 175 18 HOH HOH A . E 4 HOH 16 176 19 HOH HOH A . E 4 HOH 17 177 20 HOH HOH A . E 4 HOH 18 178 21 HOH HOH A . E 4 HOH 19 179 22 HOH HOH A . E 4 HOH 20 180 23 HOH HOH A . E 4 HOH 21 181 24 HOH HOH A . E 4 HOH 22 182 25 HOH HOH A . E 4 HOH 23 183 26 HOH HOH A . E 4 HOH 24 184 27 HOH HOH A . E 4 HOH 25 185 28 HOH HOH A . E 4 HOH 26 186 29 HOH HOH A . E 4 HOH 27 187 30 HOH HOH A . E 4 HOH 28 188 31 HOH HOH A . E 4 HOH 29 189 32 HOH HOH A . E 4 HOH 30 190 33 HOH HOH A . E 4 HOH 31 191 34 HOH HOH A . E 4 HOH 32 192 35 HOH HOH A . E 4 HOH 33 193 36 HOH HOH A . E 4 HOH 34 194 37 HOH HOH A . E 4 HOH 35 195 38 HOH HOH A . E 4 HOH 36 196 39 HOH HOH A . E 4 HOH 37 197 40 HOH HOH A . E 4 HOH 38 198 41 HOH HOH A . E 4 HOH 39 199 42 HOH HOH A . E 4 HOH 40 200 43 HOH HOH A . E 4 HOH 41 201 44 HOH HOH A . E 4 HOH 42 202 45 HOH HOH A . E 4 HOH 43 203 46 HOH HOH A . E 4 HOH 44 204 47 HOH HOH A . E 4 HOH 45 205 48 HOH HOH A . E 4 HOH 46 206 49 HOH HOH A . E 4 HOH 47 207 50 HOH HOH A . E 4 HOH 48 208 51 HOH HOH A . E 4 HOH 49 209 52 HOH HOH A . E 4 HOH 50 210 53 HOH HOH A . E 4 HOH 51 211 54 HOH HOH A . E 4 HOH 52 212 55 HOH HOH A . E 4 HOH 53 213 56 HOH HOH A . E 4 HOH 54 214 57 HOH HOH A . E 4 HOH 55 215 58 HOH HOH A . E 4 HOH 56 216 59 HOH HOH A . E 4 HOH 57 217 60 HOH HOH A . E 4 HOH 58 218 61 HOH HOH A . E 4 HOH 59 219 62 HOH HOH A . E 4 HOH 60 220 63 HOH HOH A . E 4 HOH 61 221 64 HOH HOH A . E 4 HOH 62 222 65 HOH HOH A . E 4 HOH 63 223 66 HOH HOH A . E 4 HOH 64 224 67 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 65 A MSE 64 ? MET SELENOMETHIONINE 2 A MSE 67 A MSE 66 ? MET SELENOMETHIONINE 3 A MSE 72 A MSE 71 ? MET SELENOMETHIONINE 4 A MSE 92 A MSE 91 ? MET SELENOMETHIONINE 5 A MSE 117 A MSE 116 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-08 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_struct_ref_seq_dif.details' 7 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 7.7550 -20.4920 -7.3890 0.2115 0.0282 -0.0385 0.0340 0.0665 -0.0253 11.6958 22.7200 14.3167 12.0065 6.0438 -4.5822 -0.1885 -0.5626 0.7510 -0.1391 -0.3998 -0.7313 1.7376 0.6692 -0.7615 'X-RAY DIFFRACTION' 2 ? refined 7.7730 -7.5130 -16.7760 -0.0716 0.0546 -0.2138 -0.0256 0.0335 -0.0370 1.0885 2.4107 0.6543 0.6675 -0.3041 -0.2579 0.0015 -0.0521 0.0506 0.1029 0.0569 0.0175 0.1027 -0.0319 -0.0656 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 13 A 18 ALL A 12 A 17 'X-RAY DIFFRACTION' ? 2 2 A 19 A 154 ALL A 18 A 153 'X-RAY DIFFRACTION' ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 1 REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LEU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 141 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -104.13 _pdbx_validate_torsion.psi -70.68 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 15 ? CD ? A GLU 16 CD 2 1 Y 1 A GLU 15 ? OE1 ? A GLU 16 OE1 3 1 Y 1 A GLU 15 ? OE2 ? A GLU 16 OE2 4 1 Y 1 A SER 23 ? OG ? A SER 24 OG 5 1 Y 1 A ARG 24 ? NE ? A ARG 25 NE 6 1 Y 1 A ARG 24 ? CZ ? A ARG 25 CZ 7 1 Y 1 A ARG 24 ? NH1 ? A ARG 25 NH1 8 1 Y 1 A ARG 24 ? NH2 ? A ARG 25 NH2 9 1 Y 1 A GLU 38 ? CD ? A GLU 39 CD 10 1 Y 1 A GLU 38 ? OE1 ? A GLU 39 OE1 11 1 Y 1 A GLU 38 ? OE2 ? A GLU 39 OE2 12 1 Y 1 A GLU 51 ? CD ? A GLU 52 CD 13 1 Y 1 A GLU 51 ? OE1 ? A GLU 52 OE1 14 1 Y 1 A GLU 51 ? OE2 ? A GLU 52 OE2 15 1 Y 1 A LYS 99 ? CD ? A LYS 100 CD 16 1 Y 1 A LYS 99 ? CE ? A LYS 100 CE 17 1 Y 1 A LYS 99 ? NZ ? A LYS 100 NZ 18 1 Y 1 A GLU 109 ? CD ? A GLU 110 CD 19 1 Y 1 A GLU 109 ? OE1 ? A GLU 110 OE1 20 1 Y 1 A GLU 109 ? OE2 ? A GLU 110 OE2 21 1 Y 1 A ARG 121 ? NE ? A ARG 122 NE 22 1 Y 1 A ARG 121 ? CZ ? A ARG 122 CZ 23 1 Y 1 A ARG 121 ? NH1 ? A ARG 122 NH1 24 1 Y 1 A ARG 121 ? NH2 ? A ARG 122 NH2 25 1 N 1 A PE4 158 ? C16 ? B PE4 1 C16 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A SER 2 ? A SER 3 4 1 Y 1 A ASP 3 ? A ASP 4 5 1 Y 1 A ASP 4 ? A ASP 5 6 1 Y 1 A LEU 5 ? A LEU 6 7 1 Y 1 A THR 6 ? A THR 7 8 1 Y 1 A ASP 7 ? A ASP 8 9 1 Y 1 A ALA 8 ? A ALA 9 10 1 Y 1 A GLN 9 ? A GLN 10 11 1 Y 1 A THR 10 ? A THR 11 12 1 Y 1 A ALA 11 ? A ALA 12 13 1 Y 1 A LYS 154 ? A LYS 155 14 1 Y 1 A GLU 155 ? A GLU 156 15 1 Y 1 A GLU 156 ? A GLU 157 16 1 Y 1 A ALA 157 ? A ALA 158 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL' PE4 3 1,2-ETHANEDIOL EDO 4 water HOH #