HEADER TRANSCRIPTION 20-JUN-06 2HDE TITLE SOLUTION STRUCTURE OF HUMAN SAP18 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEACETYLASE COMPLEX SUBUNIT SAP18; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 6-149; COMPND 5 SYNONYM: SIN3-ASSOCIATED POLYPEPTIDE, 18 KDA, SIN3-ASSOCIATED COMPND 6 POLYPEPTIDE P18, 2HOR0202; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SAP18; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL-CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS HDAC, HISTONE DEACETYLASE, SIN3, GLI, BICOID, GAGA, TRANSCRIPTIONAL KEYWDS 2 REPRESSOR, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.A.MCCALLUM,J.P.YIN,B.PAN,W.J.FAIRBROTHER REVDAT 3 20-OCT-21 2HDE 1 REMARK SEQADV REVDAT 2 24-FEB-09 2HDE 1 VERSN REVDAT 1 24-APR-07 2HDE 0 JRNL AUTH S.A.MCCALLUM,J.F.BAZAN,M.MERCHANT,J.YIN,B.PAN, JRNL AUTH 2 F.J.DE SAUVAGE,W.J.FAIRBROTHER JRNL TITL STRUCTURE OF SAP18: A UBIQUITIN FOLD IN HISTONE DEACETYLASE JRNL TITL 2 COMPLEX ASSEMBLY. JRNL REF BIOCHEMISTRY V. 45 11974 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 17002296 JRNL DOI 10.1021/BI060687L REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 2000.1, CNX 2000.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ,RICE,SIMONSON, REMARK 3 WARREN,ACCELRYS SOFTWARE INC.(BADGER,BERARD,KUMAR,SZALMA,YIP, REMARK 3 DZAKULA) (CNX) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CYANA VERSION 1.06 AND CANDID VERSION REMARK 3 1.1 WERE ALSO USED FOR REFINEMENT REMARK 4 REMARK 4 2HDE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038223. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 50MM SODIUM PHOSPHATE, 50MM REMARK 210 SODIUM CHLORIDE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM SAP18 U-15N, 13C, 50MM REMARK 210 SODIUM CHLORIDE, 50MM SODIUM REMARK 210 PHOSPHATE, PH 5.5, 20UM EDTA, REMARK 210 3MM SODIUM AZIDE, 0.1MM DSS, 90% REMARK 210 H2O, 10% D2O; 1MM SAP18 U-15N, REMARK 210 50MM SODIUM CHLORIDE, 50MM REMARK 210 SODIUM PHOSPHATE, PH 5.5, 20UM REMARK 210 EDTA, 3MM SODIUM AZIDE, 0.1MM REMARK 210 DSS, 90%H2O, 10%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TALOS 98.040.21.02, MONTE 1.0 REMARK 210 METHOD USED : RESTRAINED MOLECULAR DYNAMICS REMARK 210 (TORSION ANGLE AND CARTESIAN REMARK 210 DYNAMICS) REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 3D TRIPLE REMARK 210 RESONANCE TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 -46.74 -152.15 REMARK 500 1 HIS A 41 -81.16 -30.78 REMARK 500 1 ARG A 42 -174.95 -172.10 REMARK 500 1 SER A 54 -76.98 -97.35 REMARK 500 1 MET A 62 -34.94 -31.34 REMARK 500 1 ASP A 63 30.00 -90.70 REMARK 500 1 ASP A 95 109.57 -46.41 REMARK 500 1 VAL A 96 -159.08 -144.59 REMARK 500 1 THR A 109 -169.79 -113.71 REMARK 500 1 PRO A 146 171.74 -49.40 REMARK 500 2 PRO A 19 179.07 -55.71 REMARK 500 2 ARG A 39 106.70 -162.37 REMARK 500 2 SER A 54 -72.91 -89.34 REMARK 500 2 MET A 62 -39.43 -32.09 REMARK 500 2 ASP A 63 30.08 -92.72 REMARK 500 2 VAL A 96 -63.90 -133.39 REMARK 500 2 ARG A 98 107.50 -56.08 REMARK 500 2 PRO A 99 -121.41 -57.07 REMARK 500 2 ARG A 102 25.09 -146.20 REMARK 500 2 THR A 109 -168.66 -111.19 REMARK 500 2 SER A 111 95.05 -69.74 REMARK 500 2 SER A 147 64.69 -163.84 REMARK 500 3 SER A 3 -54.23 -130.70 REMARK 500 3 ARG A 39 90.69 -162.55 REMARK 500 3 HIS A 41 -31.55 -37.60 REMARK 500 3 PHE A 46 54.03 -160.11 REMARK 500 3 SER A 47 -69.18 -138.84 REMARK 500 3 ASN A 50 92.82 -34.07 REMARK 500 3 SER A 54 -82.28 -85.69 REMARK 500 3 MET A 62 -36.46 -31.77 REMARK 500 3 VAL A 96 -156.50 -66.82 REMARK 500 3 PRO A 99 -112.99 -50.97 REMARK 500 3 ARG A 102 24.93 -150.83 REMARK 500 3 THR A 109 -168.82 -110.50 REMARK 500 3 ASN A 141 33.61 -144.85 REMARK 500 3 ARG A 142 -26.61 -172.58 REMARK 500 3 ALA A 143 -174.42 -54.27 REMARK 500 4 VAL A 7 -69.23 -134.99 REMARK 500 4 PRO A 16 -166.28 -62.96 REMARK 500 4 GLU A 17 104.76 -57.13 REMARK 500 4 HIS A 41 -80.94 -29.58 REMARK 500 4 VAL A 51 138.28 -175.23 REMARK 500 4 SER A 54 -68.55 -101.77 REMARK 500 4 MET A 62 -35.06 -32.72 REMARK 500 4 THR A 94 170.28 -55.88 REMARK 500 4 PRO A 99 -78.79 -57.27 REMARK 500 4 ARG A 102 27.01 -157.35 REMARK 500 4 THR A 109 -168.34 -113.63 REMARK 500 5 SER A 3 60.82 -113.92 REMARK 500 5 GLN A 9 35.59 -151.41 REMARK 500 REMARK 500 THIS ENTRY HAS 248 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2HDE A 6 149 UNP O00422 SAP18_HUMAN 6 149 SEQADV 2HDE GLY A 2 UNP O00422 CLONING ARTIFACT SEQADV 2HDE SER A 3 UNP O00422 CLONING ARTIFACT SEQADV 2HDE HIS A 4 UNP O00422 CLONING ARTIFACT SEQADV 2HDE MET A 5 UNP O00422 CLONING ARTIFACT SEQADV 2HDE SER A 26 UNP O00422 CYS 26 ENGINEERED MUTATION SEQRES 1 A 148 GLY SER HIS MET ARG VAL THR GLN GLU GLU ILE LYS LYS SEQRES 2 A 148 GLU PRO GLU LYS PRO ILE ASP ARG GLU LYS THR SER PRO SEQRES 3 A 148 LEU LEU LEU ARG VAL PHE THR THR ASN ASN GLY ARG HIS SEQRES 4 A 148 HIS ARG MET ASP GLU PHE SER ARG GLY ASN VAL PRO SER SEQRES 5 A 148 SER GLU LEU GLN ILE TYR THR TRP MET ASP ALA THR LEU SEQRES 6 A 148 LYS GLU LEU THR SER LEU VAL LYS GLU VAL TYR PRO GLU SEQRES 7 A 148 ALA ARG LYS LYS GLY THR HIS PHE ASN PHE ALA ILE VAL SEQRES 8 A 148 PHE THR ASP VAL LYS ARG PRO GLY TYR ARG VAL LYS GLU SEQRES 9 A 148 ILE GLY SER THR MET SER GLY ARG LYS GLY THR ASP ASP SEQRES 10 A 148 SER MET THR LEU GLN SER GLN LYS PHE GLN ILE GLY ASP SEQRES 11 A 148 TYR LEU ASP ILE ALA ILE THR PRO PRO ASN ARG ALA PRO SEQRES 12 A 148 PRO PRO SER GLY ARG HELIX 1 1 ARG A 42 PHE A 46 5 5 HELIX 2 2 THR A 65 TYR A 77 1 13 HELIX 3 3 TYR A 77 LYS A 82 1 6 HELIX 4 4 THR A 121 LYS A 126 5 6 SHEET 1 A 5 GLU A 55 THR A 60 0 SHEET 2 A 5 LEU A 28 THR A 35 -1 N LEU A 28 O THR A 60 SHEET 3 A 5 TYR A 132 THR A 138 1 O LEU A 133 N PHE A 33 SHEET 4 A 5 HIS A 86 ILE A 91 -1 N HIS A 86 O THR A 138 SHEET 5 A 5 LYS A 104 MET A 110 -1 O LYS A 104 N ILE A 91 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1