data_2HEV # _entry.id 2HEV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HEV pdb_00002hev 10.2210/pdb2hev/pdb RCSB RCSB038268 ? ? WWPDB D_1000038268 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2HEW . unspecified PDB 2HEY . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2HEV _pdbx_database_status.recvd_initial_deposition_date 2006-06-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hymowitz, S.G.' 1 'Compaan, D.M.' 2 # _citation.id primary _citation.title 'The Crystal Structure of the Costimulatory OX40-OX40L Complex.' _citation.journal_abbrev Structure _citation.journal_volume 14 _citation.page_first 1321 _citation.page_last 1330 _citation.year 2006 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16905106 _citation.pdbx_database_id_DOI 10.1016/j.str.2006.06.015 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Compaan, D.M.' 1 ? primary 'Hymowitz, S.G.' 2 ? # _cell.entry_id 2HEV _cell.length_a 111.903 _cell.length_b 111.903 _cell.length_c 233.238 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HEV _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tumor necrosis factor ligand superfamily member 4' 15858.034 1 ? 'N90D, N114D' 'extracellular domain (residues 51-183)' ? 2 polymer man 'Tumor necrosis factor receptor superfamily member 4' 15808.759 1 ? ? 'extracellular domain (residues 29-170)' ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? 4 water nat water 18.015 87 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'OX40 ligand, OX40L, Glycoprotein Gp34, TAX transcriptionally-activated glycoprotein 1, CD252 antigen' 2 'OX40L receptor, ACT35 antigen, TAX transcriptionally-activated glycoprotein 1 receptor, CD134 antigen' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSHMQVSHRYPRIQSIKVQFTEYKKEKGFILTSQKEDEIMKVQDNSVIINCDGFYLISLKGYFSQEVDISLHYQKDEEPL FQLKKVRSVNSLMVASLTYKDKVYLNVTTDNTSLDDFHVNGGELILIHQNPGEFCVL ; ;GSHMQVSHRYPRIQSIKVQFTEYKKEKGFILTSQKEDEIMKVQDNSVIINCDGFYLISLKGYFSQEVDISLHYQKDEEPL FQLKKVRSVNSLMVASLTYKDKVYLNVTTDNTSLDDFHVNGGELILIHQNPGEFCVL ; F ? 2 'polypeptide(L)' no no ;GSHMLHCVGDTYPSNDRCCHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSSKPCKPCTWCNLRSGSERKQLCTATQD TVCRCRAGTQPLDSYKPGVDCAPCPPGHFSPGDNQACKPWTNCTLAGKHTLQPASNSSDAICEDRD ; ;GSHMLHCVGDTYPSNDRCCHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSSKPCKPCTWCNLRSGSERKQLCTATQD TVCRCRAGTQPLDSYKPGVDCAPCPPGHFSPGDNQACKPWTNCTLAGKHTLQPASNSSDAICEDRD ; R ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 GLN n 1 6 VAL n 1 7 SER n 1 8 HIS n 1 9 ARG n 1 10 TYR n 1 11 PRO n 1 12 ARG n 1 13 ILE n 1 14 GLN n 1 15 SER n 1 16 ILE n 1 17 LYS n 1 18 VAL n 1 19 GLN n 1 20 PHE n 1 21 THR n 1 22 GLU n 1 23 TYR n 1 24 LYS n 1 25 LYS n 1 26 GLU n 1 27 LYS n 1 28 GLY n 1 29 PHE n 1 30 ILE n 1 31 LEU n 1 32 THR n 1 33 SER n 1 34 GLN n 1 35 LYS n 1 36 GLU n 1 37 ASP n 1 38 GLU n 1 39 ILE n 1 40 MET n 1 41 LYS n 1 42 VAL n 1 43 GLN n 1 44 ASP n 1 45 ASN n 1 46 SER n 1 47 VAL n 1 48 ILE n 1 49 ILE n 1 50 ASN n 1 51 CYS n 1 52 ASP n 1 53 GLY n 1 54 PHE n 1 55 TYR n 1 56 LEU n 1 57 ILE n 1 58 SER n 1 59 LEU n 1 60 LYS n 1 61 GLY n 1 62 TYR n 1 63 PHE n 1 64 SER n 1 65 GLN n 1 66 GLU n 1 67 VAL n 1 68 ASP n 1 69 ILE n 1 70 SER n 1 71 LEU n 1 72 HIS n 1 73 TYR n 1 74 GLN n 1 75 LYS n 1 76 ASP n 1 77 GLU n 1 78 GLU n 1 79 PRO n 1 80 LEU n 1 81 PHE n 1 82 GLN n 1 83 LEU n 1 84 LYS n 1 85 LYS n 1 86 VAL n 1 87 ARG n 1 88 SER n 1 89 VAL n 1 90 ASN n 1 91 SER n 1 92 LEU n 1 93 MET n 1 94 VAL n 1 95 ALA n 1 96 SER n 1 97 LEU n 1 98 THR n 1 99 TYR n 1 100 LYS n 1 101 ASP n 1 102 LYS n 1 103 VAL n 1 104 TYR n 1 105 LEU n 1 106 ASN n 1 107 VAL n 1 108 THR n 1 109 THR n 1 110 ASP n 1 111 ASN n 1 112 THR n 1 113 SER n 1 114 LEU n 1 115 ASP n 1 116 ASP n 1 117 PHE n 1 118 HIS n 1 119 VAL n 1 120 ASN n 1 121 GLY n 1 122 GLY n 1 123 GLU n 1 124 LEU n 1 125 ILE n 1 126 LEU n 1 127 ILE n 1 128 HIS n 1 129 GLN n 1 130 ASN n 1 131 PRO n 1 132 GLY n 1 133 GLU n 1 134 PHE n 1 135 CYS n 1 136 VAL n 1 137 LEU n 2 1 GLY n 2 2 SER n 2 3 HIS n 2 4 MET n 2 5 LEU n 2 6 HIS n 2 7 CYS n 2 8 VAL n 2 9 GLY n 2 10 ASP n 2 11 THR n 2 12 TYR n 2 13 PRO n 2 14 SER n 2 15 ASN n 2 16 ASP n 2 17 ARG n 2 18 CYS n 2 19 CYS n 2 20 HIS n 2 21 GLU n 2 22 CYS n 2 23 ARG n 2 24 PRO n 2 25 GLY n 2 26 ASN n 2 27 GLY n 2 28 MET n 2 29 VAL n 2 30 SER n 2 31 ARG n 2 32 CYS n 2 33 SER n 2 34 ARG n 2 35 SER n 2 36 GLN n 2 37 ASN n 2 38 THR n 2 39 VAL n 2 40 CYS n 2 41 ARG n 2 42 PRO n 2 43 CYS n 2 44 GLY n 2 45 PRO n 2 46 GLY n 2 47 PHE n 2 48 TYR n 2 49 ASN n 2 50 ASP n 2 51 VAL n 2 52 VAL n 2 53 SER n 2 54 SER n 2 55 LYS n 2 56 PRO n 2 57 CYS n 2 58 LYS n 2 59 PRO n 2 60 CYS n 2 61 THR n 2 62 TRP n 2 63 CYS n 2 64 ASN n 2 65 LEU n 2 66 ARG n 2 67 SER n 2 68 GLY n 2 69 SER n 2 70 GLU n 2 71 ARG n 2 72 LYS n 2 73 GLN n 2 74 LEU n 2 75 CYS n 2 76 THR n 2 77 ALA n 2 78 THR n 2 79 GLN n 2 80 ASP n 2 81 THR n 2 82 VAL n 2 83 CYS n 2 84 ARG n 2 85 CYS n 2 86 ARG n 2 87 ALA n 2 88 GLY n 2 89 THR n 2 90 GLN n 2 91 PRO n 2 92 LEU n 2 93 ASP n 2 94 SER n 2 95 TYR n 2 96 LYS n 2 97 PRO n 2 98 GLY n 2 99 VAL n 2 100 ASP n 2 101 CYS n 2 102 ALA n 2 103 PRO n 2 104 CYS n 2 105 PRO n 2 106 PRO n 2 107 GLY n 2 108 HIS n 2 109 PHE n 2 110 SER n 2 111 PRO n 2 112 GLY n 2 113 ASP n 2 114 ASN n 2 115 GLN n 2 116 ALA n 2 117 CYS n 2 118 LYS n 2 119 PRO n 2 120 TRP n 2 121 THR n 2 122 ASN n 2 123 CYS n 2 124 THR n 2 125 LEU n 2 126 ALA n 2 127 GLY n 2 128 LYS n 2 129 HIS n 2 130 THR n 2 131 LEU n 2 132 GLN n 2 133 PRO n 2 134 ALA n 2 135 SER n 2 136 ASN n 2 137 SER n 2 138 SER n 2 139 ASP n 2 140 ALA n 2 141 ILE n 2 142 CYS n 2 143 GLU n 2 144 ASP n 2 145 ARG n 2 146 ASP n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human Homo 'TNFSF4, TXGP1' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? 'fall armyworm' 'Spodoptera frugiperda' 7108 Spodoptera ? ? ? ? ? Hi5 ? ? ? ? ? ? ? plasmid ? ? ? ? ? ? 2 1 sample ? ? ? human Homo 'TNFRSF4, TXGP1L' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? 'fall armyworm' 'Spodoptera frugiperda' 7108 Spodoptera ? ? ? ? ? Hi5 ? ? ? ? ? ? ? plasmid ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP TNFL4_HUMAN P23510 1 51 ? ? 2 UNP TNR4_HUMAN P43489 2 29 ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2HEV F 5 ? 137 ? P23510 51 ? 183 ? 51 183 2 2 2HEV R 5 ? 146 ? P43489 29 ? 170 ? 29 170 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2HEV GLY F 1 ? UNP P23510 ? ? 'cloning artifact' 47 1 1 2HEV SER F 2 ? UNP P23510 ? ? 'cloning artifact' 48 2 1 2HEV HIS F 3 ? UNP P23510 ? ? 'cloning artifact' 49 3 1 2HEV MET F 4 ? UNP P23510 ? ? 'cloning artifact' 50 4 1 2HEV ASP F 44 ? UNP P23510 ASN 90 'engineered mutation' 90 5 1 2HEV ASP F 68 ? UNP P23510 ASN 114 'engineered mutation' 114 6 2 2HEV GLY R 1 ? UNP P43489 ? ? 'cloning artifact' 25 7 2 2HEV SER R 2 ? UNP P43489 ? ? 'cloning artifact' 26 8 2 2HEV HIS R 3 ? UNP P43489 ? ? 'cloning artifact' 27 9 2 2HEV MET R 4 ? UNP P43489 ? ? 'cloning artifact' 28 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2HEV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.44 _exptl_crystal.density_percent_sol 72.27 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '8% PEG 20000, 0.1M MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2003-10-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9999 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9999 # _reflns.entry_id 2HEV _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 2.4 _reflns.d_resolution_low 50 _reflns.number_all ? _reflns.number_obs 22255 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.055 _reflns.pdbx_netI_over_sigmaI 11.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.4 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.505 _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.pdbx_redundancy 6.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2195 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2HEV _refine.ls_number_reflns_obs 22103 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I -3 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.41 _refine.ls_percent_reflns_obs 99.86 _refine.ls_R_factor_obs 0.21248 _refine.ls_R_factor_all 0.21248 _refine.ls_R_factor_R_work 0.20825 _refine.ls_R_factor_R_free 0.2511 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 2221 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.913 _refine.B_iso_mean 38.975 _refine.aniso_B[1][1] 1.91 _refine.aniso_B[2][2] 1.91 _refine.aniso_B[3][3] -2.87 _refine.aniso_B[1][2] 0.96 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'murine OX40L' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.229 _refine.pdbx_overall_ESU_R_Free 0.207 _refine.overall_SU_ML 0.136 _refine.overall_SU_B 11.211 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2067 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 87 _refine_hist.number_atoms_total 2182 _refine_hist.d_res_high 2.41 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.022 ? 2143 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1831 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.109 1.974 ? 2910 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.694 3.000 ? 4310 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.866 5.000 ? 264 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.790 25.104 ? 96 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.019 15.000 ? 360 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.332 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.067 0.200 ? 320 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 2359 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 393 'X-RAY DIFFRACTION' ? r_nbd_refined 0.172 0.200 ? 343 'X-RAY DIFFRACTION' ? r_nbd_other 0.168 0.200 ? 1692 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.170 0.200 ? 976 'X-RAY DIFFRACTION' ? r_nbtor_other 0.080 0.200 ? 1284 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.155 0.200 ? 84 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.124 0.200 ? 9 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.158 0.200 ? 47 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.328 0.200 ? 12 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.242 2.500 ? 1708 'X-RAY DIFFRACTION' ? r_mcbond_other 0.368 2.500 ? 537 'X-RAY DIFFRACTION' ? r_mcangle_it 2.877 5.000 ? 2155 'X-RAY DIFFRACTION' ? r_scbond_it 1.909 2.500 ? 938 'X-RAY DIFFRACTION' ? r_scangle_it 2.852 5.000 ? 755 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 25 _refine_ls_shell.d_res_high 2.406 _refine_ls_shell.d_res_low 2.456 _refine_ls_shell.number_reflns_R_work 1144 _refine_ls_shell.R_factor_R_work 0.276 _refine_ls_shell.percent_reflns_obs 99.92 _refine_ls_shell.R_factor_R_free 0.357 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 133 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2HEV _struct.title 'Crystal structure of the complex between OX40L and OX40' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HEV _struct_keywords.pdbx_keywords CYTOKINE _struct_keywords.text 'cytokine, receptor-ligand complex, TNFSF, TNFRSF' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ;The crystallographic assymmetric unit consists of one ligand protomer and one receptor protomer. A crystallographic 3-fold axis generates the biologically relevant trimer ; _struct_biol.pdbx_parent_biol_id ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASN _struct_conf.beg_label_asym_id B _struct_conf.beg_label_seq_id 64 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id SER _struct_conf.end_label_asym_id B _struct_conf.end_label_seq_id 67 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASN _struct_conf.beg_auth_asym_id R _struct_conf.beg_auth_seq_id 88 _struct_conf.end_auth_comp_id SER _struct_conf.end_auth_asym_id R _struct_conf.end_auth_seq_id 91 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 51 SG ? ? ? 1_555 A CYS 135 SG ? ? F CYS 97 F CYS 181 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf2 disulf ? ? B CYS 7 SG ? ? ? 1_555 B CYS 18 SG ? ? R CYS 31 R CYS 42 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? B CYS 19 SG ? ? ? 1_555 B CYS 32 SG ? ? R CYS 43 R CYS 56 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf4 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 40 SG ? ? R CYS 46 R CYS 64 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf5 disulf ? ? B CYS 43 SG ? ? ? 1_555 B CYS 57 SG ? ? R CYS 67 R CYS 81 1_555 ? ? ? ? ? ? ? 2.049 ? ? disulf6 disulf ? ? B CYS 60 SG ? ? ? 1_555 B CYS 75 SG ? ? R CYS 84 R CYS 99 1_555 ? ? ? ? ? ? ? 2.018 ? ? disulf7 disulf ? ? B CYS 63 SG ? ? ? 1_555 B CYS 83 SG ? ? R CYS 87 R CYS 107 1_555 ? ? ? ? ? ? ? 2.045 ? ? disulf8 disulf ? ? B CYS 85 SG ? ? ? 1_555 B CYS 101 SG ? ? R CYS 109 R CYS 125 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf9 disulf ? ? B CYS 104 SG ? ? ? 1_555 B CYS 117 SG ? ? R CYS 128 R CYS 141 1_555 ? ? ? ? ? ? ? 2.047 ? ? disulf10 disulf ? ? B CYS 123 SG ? ? ? 1_555 B CYS 142 SG ? ? R CYS 147 R CYS 166 1_555 ? ? ? ? ? ? ? 2.044 ? ? covale1 covale one ? A ASN 106 ND2 ? ? ? 1_555 C NAG . C1 ? ? F ASN 152 F NAG 200 1_555 ? ? ? ? ? ? ? 1.451 ? N-Glycosylation covale2 covale one ? B ASN 136 ND2 ? ? ? 1_555 D NAG . C1 ? ? R ASN 160 R NAG 200 1_555 ? ? ? ? ? ? ? 1.447 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 5 ? C ? 2 ? D ? 2 ? E ? 2 ? F ? 2 ? G ? 2 ? H ? 2 ? I ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel G 1 2 ? anti-parallel H 1 2 ? anti-parallel I 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 28 ? THR A 32 ? GLY F 74 THR F 78 A 2 SER A 15 ? LYS A 24 ? SER F 61 LYS F 70 A 3 VAL A 119 ? HIS A 128 ? VAL F 165 HIS F 174 A 4 GLY A 53 ? HIS A 72 ? GLY F 99 HIS F 118 A 5 LYS A 102 ? THR A 109 ? LYS F 148 THR F 155 A 6 SER A 46 ? ILE A 48 ? SER F 92 ILE F 94 A 7 VAL A 42 ? GLN A 43 ? VAL F 88 GLN F 89 B 1 GLY A 28 ? THR A 32 ? GLY F 74 THR F 78 B 2 SER A 15 ? LYS A 24 ? SER F 61 LYS F 70 B 3 VAL A 119 ? HIS A 128 ? VAL F 165 HIS F 174 B 4 GLY A 53 ? HIS A 72 ? GLY F 99 HIS F 118 B 5 PHE A 81 ? LEU A 97 ? PHE F 127 LEU F 143 C 1 THR B 11 ? SER B 14 ? THR R 35 SER R 38 C 2 ARG B 17 ? HIS B 20 ? ARG R 41 HIS R 44 D 1 ASN B 26 ? SER B 30 ? ASN R 50 SER R 54 D 2 VAL B 39 ? PRO B 42 ? VAL R 63 PRO R 66 E 1 PHE B 47 ? TYR B 48 ? PHE R 71 TYR R 72 E 2 LYS B 58 ? PRO B 59 ? LYS R 82 PRO R 83 F 1 SER B 69 ? GLN B 73 ? SER R 93 GLN R 97 F 2 VAL B 82 ? CYS B 85 ? VAL R 106 CYS R 109 G 1 THR B 89 ? PRO B 91 ? THR R 113 PRO R 115 G 2 CYS B 101 ? PRO B 103 ? CYS R 125 PRO R 127 H 1 HIS B 108 ? PHE B 109 ? HIS R 132 PHE R 133 H 2 LYS B 118 ? PRO B 119 ? LYS R 142 PRO R 143 I 1 HIS B 129 ? GLN B 132 ? HIS R 153 GLN R 156 I 2 ILE B 141 ? GLU B 143 ? ILE R 165 GLU R 167 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 32 ? O THR F 78 N GLN A 19 ? N GLN F 65 A 2 3 N VAL A 18 ? N VAL F 64 O LEU A 124 ? O LEU F 170 A 3 4 O ILE A 127 ? O ILE F 173 N LEU A 56 ? N LEU F 102 A 4 5 N SER A 70 ? N SER F 116 O ASN A 106 ? O ASN F 152 A 5 6 O VAL A 103 ? O VAL F 149 N VAL A 47 ? N VAL F 93 A 6 7 O SER A 46 ? O SER F 92 N GLN A 43 ? N GLN F 89 B 1 2 O THR A 32 ? O THR F 78 N GLN A 19 ? N GLN F 65 B 2 3 N VAL A 18 ? N VAL F 64 O LEU A 124 ? O LEU F 170 B 3 4 O ILE A 127 ? O ILE F 173 N LEU A 56 ? N LEU F 102 B 4 5 N ILE A 69 ? N ILE F 115 O LEU A 83 ? O LEU F 129 C 1 2 N SER B 14 ? N SER R 38 O ARG B 17 ? O ARG R 41 D 1 2 N GLY B 27 ? N GLY R 51 O ARG B 41 ? O ARG R 65 E 1 2 N TYR B 48 ? N TYR R 72 O LYS B 58 ? O LYS R 82 F 1 2 N GLU B 70 ? N GLU R 94 O ARG B 84 ? O ARG R 108 G 1 2 N GLN B 90 ? N GLN R 114 O ALA B 102 ? O ALA R 126 H 1 2 N PHE B 109 ? N PHE R 133 O LYS B 118 ? O LYS R 142 I 1 2 N LEU B 131 ? N LEU R 155 O ILE B 141 ? O ILE R 165 # _database_PDB_matrix.entry_id 2HEV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2HEV _atom_sites.fract_transf_matrix[1][1] 0.008936 _atom_sites.fract_transf_matrix[1][2] 0.005159 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010319 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004287 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 47 ? ? ? F . n A 1 2 SER 2 48 ? ? ? F . n A 1 3 HIS 3 49 ? ? ? F . n A 1 4 MET 4 50 ? ? ? F . n A 1 5 GLN 5 51 ? ? ? F . n A 1 6 VAL 6 52 ? ? ? F . n A 1 7 SER 7 53 ? ? ? F . n A 1 8 HIS 8 54 ? ? ? F . n A 1 9 ARG 9 55 ? ? ? F . n A 1 10 TYR 10 56 ? ? ? F . n A 1 11 PRO 11 57 ? ? ? F . n A 1 12 ARG 12 58 58 ARG ARG F . n A 1 13 ILE 13 59 59 ILE ILE F . n A 1 14 GLN 14 60 60 GLN GLN F . n A 1 15 SER 15 61 61 SER SER F . n A 1 16 ILE 16 62 62 ILE ILE F . n A 1 17 LYS 17 63 63 LYS LYS F . n A 1 18 VAL 18 64 64 VAL VAL F . n A 1 19 GLN 19 65 65 GLN GLN F . n A 1 20 PHE 20 66 66 PHE PHE F . n A 1 21 THR 21 67 67 THR THR F . n A 1 22 GLU 22 68 68 GLU GLU F . n A 1 23 TYR 23 69 69 TYR TYR F . n A 1 24 LYS 24 70 70 LYS LYS F . n A 1 25 LYS 25 71 71 LYS LYS F . n A 1 26 GLU 26 72 72 GLU GLU F . n A 1 27 LYS 27 73 73 LYS LYS F . n A 1 28 GLY 28 74 74 GLY GLY F . n A 1 29 PHE 29 75 75 PHE PHE F . n A 1 30 ILE 30 76 76 ILE ILE F . n A 1 31 LEU 31 77 77 LEU LEU F . n A 1 32 THR 32 78 78 THR THR F . n A 1 33 SER 33 79 79 SER SER F . n A 1 34 GLN 34 80 80 GLN GLN F . n A 1 35 LYS 35 81 81 LYS LYS F . n A 1 36 GLU 36 82 82 GLU GLU F . n A 1 37 ASP 37 83 83 ASP ASP F . n A 1 38 GLU 38 84 84 GLU GLU F . n A 1 39 ILE 39 85 85 ILE ILE F . n A 1 40 MET 40 86 86 MET MET F . n A 1 41 LYS 41 87 87 LYS LYS F . n A 1 42 VAL 42 88 88 VAL VAL F . n A 1 43 GLN 43 89 89 GLN GLN F . n A 1 44 ASP 44 90 90 ASP ASP F . n A 1 45 ASN 45 91 91 ASN ASN F . n A 1 46 SER 46 92 92 SER SER F . n A 1 47 VAL 47 93 93 VAL VAL F . n A 1 48 ILE 48 94 94 ILE ILE F . n A 1 49 ILE 49 95 95 ILE ILE F . n A 1 50 ASN 50 96 96 ASN ASN F . n A 1 51 CYS 51 97 97 CYS CYS F . n A 1 52 ASP 52 98 98 ASP ASP F . n A 1 53 GLY 53 99 99 GLY GLY F . n A 1 54 PHE 54 100 100 PHE PHE F . n A 1 55 TYR 55 101 101 TYR TYR F . n A 1 56 LEU 56 102 102 LEU LEU F . n A 1 57 ILE 57 103 103 ILE ILE F . n A 1 58 SER 58 104 104 SER SER F . n A 1 59 LEU 59 105 105 LEU LEU F . n A 1 60 LYS 60 106 106 LYS LYS F . n A 1 61 GLY 61 107 107 GLY GLY F . n A 1 62 TYR 62 108 108 TYR TYR F . n A 1 63 PHE 63 109 109 PHE PHE F . n A 1 64 SER 64 110 110 SER SER F . n A 1 65 GLN 65 111 111 GLN GLN F . n A 1 66 GLU 66 112 112 GLU GLU F . n A 1 67 VAL 67 113 113 VAL VAL F . n A 1 68 ASP 68 114 114 ASP ASP F . n A 1 69 ILE 69 115 115 ILE ILE F . n A 1 70 SER 70 116 116 SER SER F . n A 1 71 LEU 71 117 117 LEU LEU F . n A 1 72 HIS 72 118 118 HIS HIS F . n A 1 73 TYR 73 119 119 TYR TYR F . n A 1 74 GLN 74 120 120 GLN GLN F . n A 1 75 LYS 75 121 121 LYS LYS F . n A 1 76 ASP 76 122 122 ASP ASP F . n A 1 77 GLU 77 123 123 GLU GLU F . n A 1 78 GLU 78 124 124 GLU GLU F . n A 1 79 PRO 79 125 125 PRO PRO F . n A 1 80 LEU 80 126 126 LEU LEU F . n A 1 81 PHE 81 127 127 PHE PHE F . n A 1 82 GLN 82 128 128 GLN GLN F . n A 1 83 LEU 83 129 129 LEU LEU F . n A 1 84 LYS 84 130 130 LYS LYS F . n A 1 85 LYS 85 131 131 LYS LYS F . n A 1 86 VAL 86 132 132 VAL VAL F . n A 1 87 ARG 87 133 133 ARG ARG F . n A 1 88 SER 88 134 134 SER SER F . n A 1 89 VAL 89 135 135 VAL VAL F . n A 1 90 ASN 90 136 136 ASN ASN F . n A 1 91 SER 91 137 137 SER SER F . n A 1 92 LEU 92 138 138 LEU LEU F . n A 1 93 MET 93 139 139 MET MET F . n A 1 94 VAL 94 140 140 VAL VAL F . n A 1 95 ALA 95 141 141 ALA ALA F . n A 1 96 SER 96 142 142 SER SER F . n A 1 97 LEU 97 143 143 LEU LEU F . n A 1 98 THR 98 144 144 THR THR F . n A 1 99 TYR 99 145 145 TYR TYR F . n A 1 100 LYS 100 146 146 LYS LYS F . n A 1 101 ASP 101 147 147 ASP ASP F . n A 1 102 LYS 102 148 148 LYS LYS F . n A 1 103 VAL 103 149 149 VAL VAL F . n A 1 104 TYR 104 150 150 TYR TYR F . n A 1 105 LEU 105 151 151 LEU LEU F . n A 1 106 ASN 106 152 152 ASN ASN F . n A 1 107 VAL 107 153 153 VAL VAL F . n A 1 108 THR 108 154 154 THR THR F . n A 1 109 THR 109 155 155 THR THR F . n A 1 110 ASP 110 156 156 ASP ASP F . n A 1 111 ASN 111 157 157 ASN ASN F . n A 1 112 THR 112 158 158 THR THR F . n A 1 113 SER 113 159 159 SER SER F . n A 1 114 LEU 114 160 160 LEU LEU F . n A 1 115 ASP 115 161 161 ASP ASP F . n A 1 116 ASP 116 162 162 ASP ASP F . n A 1 117 PHE 117 163 163 PHE PHE F . n A 1 118 HIS 118 164 164 HIS HIS F . n A 1 119 VAL 119 165 165 VAL VAL F . n A 1 120 ASN 120 166 166 ASN ASN F . n A 1 121 GLY 121 167 167 GLY GLY F . n A 1 122 GLY 122 168 168 GLY GLY F . n A 1 123 GLU 123 169 169 GLU GLU F . n A 1 124 LEU 124 170 170 LEU LEU F . n A 1 125 ILE 125 171 171 ILE ILE F . n A 1 126 LEU 126 172 172 LEU LEU F . n A 1 127 ILE 127 173 173 ILE ILE F . n A 1 128 HIS 128 174 174 HIS HIS F . n A 1 129 GLN 129 175 175 GLN GLN F . n A 1 130 ASN 130 176 176 ASN ASN F . n A 1 131 PRO 131 177 177 PRO PRO F . n A 1 132 GLY 132 178 178 GLY GLY F . n A 1 133 GLU 133 179 179 GLU GLU F . n A 1 134 PHE 134 180 180 PHE PHE F . n A 1 135 CYS 135 181 181 CYS CYS F . n A 1 136 VAL 136 182 182 VAL VAL F . n A 1 137 LEU 137 183 183 LEU LEU F . n B 2 1 GLY 1 25 ? ? ? R . n B 2 2 SER 2 26 ? ? ? R . n B 2 3 HIS 3 27 ? ? ? R . n B 2 4 MET 4 28 ? ? ? R . n B 2 5 LEU 5 29 29 LEU LEU R . n B 2 6 HIS 6 30 30 HIS HIS R . n B 2 7 CYS 7 31 31 CYS CYS R . n B 2 8 VAL 8 32 32 VAL VAL R . n B 2 9 GLY 9 33 33 GLY GLY R . n B 2 10 ASP 10 34 34 ASP ASP R . n B 2 11 THR 11 35 35 THR THR R . n B 2 12 TYR 12 36 36 TYR TYR R . n B 2 13 PRO 13 37 37 PRO PRO R . n B 2 14 SER 14 38 38 SER SER R . n B 2 15 ASN 15 39 39 ASN ASN R . n B 2 16 ASP 16 40 40 ASP ASP R . n B 2 17 ARG 17 41 41 ARG ARG R . n B 2 18 CYS 18 42 42 CYS CYS R . n B 2 19 CYS 19 43 43 CYS CYS R . n B 2 20 HIS 20 44 44 HIS HIS R . n B 2 21 GLU 21 45 45 GLU GLU R . n B 2 22 CYS 22 46 46 CYS CYS R . n B 2 23 ARG 23 47 47 ARG ARG R . n B 2 24 PRO 24 48 48 PRO PRO R . n B 2 25 GLY 25 49 49 GLY GLY R . n B 2 26 ASN 26 50 50 ASN ASN R . n B 2 27 GLY 27 51 51 GLY GLY R . n B 2 28 MET 28 52 52 MET MET R . n B 2 29 VAL 29 53 53 VAL VAL R . n B 2 30 SER 30 54 54 SER SER R . n B 2 31 ARG 31 55 55 ARG ARG R . n B 2 32 CYS 32 56 56 CYS CYS R . n B 2 33 SER 33 57 57 SER SER R . n B 2 34 ARG 34 58 58 ARG ARG R . n B 2 35 SER 35 59 59 SER SER R . n B 2 36 GLN 36 60 60 GLN GLN R . n B 2 37 ASN 37 61 61 ASN ASN R . n B 2 38 THR 38 62 62 THR THR R . n B 2 39 VAL 39 63 63 VAL VAL R . n B 2 40 CYS 40 64 64 CYS CYS R . n B 2 41 ARG 41 65 65 ARG ARG R . n B 2 42 PRO 42 66 66 PRO PRO R . n B 2 43 CYS 43 67 67 CYS CYS R . n B 2 44 GLY 44 68 68 GLY GLY R . n B 2 45 PRO 45 69 69 PRO PRO R . n B 2 46 GLY 46 70 70 GLY GLY R . n B 2 47 PHE 47 71 71 PHE PHE R . n B 2 48 TYR 48 72 72 TYR TYR R . n B 2 49 ASN 49 73 73 ASN ASN R . n B 2 50 ASP 50 74 74 ASP ASP R . n B 2 51 VAL 51 75 75 VAL VAL R . n B 2 52 VAL 52 76 76 VAL VAL R . n B 2 53 SER 53 77 77 SER SER R . n B 2 54 SER 54 78 78 SER SER R . n B 2 55 LYS 55 79 79 LYS LYS R . n B 2 56 PRO 56 80 80 PRO PRO R . n B 2 57 CYS 57 81 81 CYS CYS R . n B 2 58 LYS 58 82 82 LYS LYS R . n B 2 59 PRO 59 83 83 PRO PRO R . n B 2 60 CYS 60 84 84 CYS CYS R . n B 2 61 THR 61 85 85 THR THR R . n B 2 62 TRP 62 86 86 TRP TRP R . n B 2 63 CYS 63 87 87 CYS CYS R . n B 2 64 ASN 64 88 88 ASN ASN R . n B 2 65 LEU 65 89 89 LEU LEU R . n B 2 66 ARG 66 90 90 ARG ARG R . n B 2 67 SER 67 91 91 SER SER R . n B 2 68 GLY 68 92 92 GLY GLY R . n B 2 69 SER 69 93 93 SER SER R . n B 2 70 GLU 70 94 94 GLU GLU R . n B 2 71 ARG 71 95 95 ARG ARG R . n B 2 72 LYS 72 96 96 LYS LYS R . n B 2 73 GLN 73 97 97 GLN GLN R . n B 2 74 LEU 74 98 98 LEU LEU R . n B 2 75 CYS 75 99 99 CYS CYS R . n B 2 76 THR 76 100 100 THR THR R . n B 2 77 ALA 77 101 101 ALA ALA R . n B 2 78 THR 78 102 102 THR THR R . n B 2 79 GLN 79 103 103 GLN GLN R . n B 2 80 ASP 80 104 104 ASP ASP R . n B 2 81 THR 81 105 105 THR THR R . n B 2 82 VAL 82 106 106 VAL VAL R . n B 2 83 CYS 83 107 107 CYS CYS R . n B 2 84 ARG 84 108 108 ARG ARG R . n B 2 85 CYS 85 109 109 CYS CYS R . n B 2 86 ARG 86 110 110 ARG ARG R . n B 2 87 ALA 87 111 111 ALA ALA R . n B 2 88 GLY 88 112 112 GLY GLY R . n B 2 89 THR 89 113 113 THR THR R . n B 2 90 GLN 90 114 114 GLN GLN R . n B 2 91 PRO 91 115 115 PRO PRO R . n B 2 92 LEU 92 116 116 LEU LEU R . n B 2 93 ASP 93 117 117 ASP ASP R . n B 2 94 SER 94 118 118 SER SER R . n B 2 95 TYR 95 119 119 TYR TYR R . n B 2 96 LYS 96 120 120 LYS LYS R . n B 2 97 PRO 97 121 121 PRO PRO R . n B 2 98 GLY 98 122 122 GLY GLY R . n B 2 99 VAL 99 123 123 VAL VAL R . n B 2 100 ASP 100 124 124 ASP ASP R . n B 2 101 CYS 101 125 125 CYS CYS R . n B 2 102 ALA 102 126 126 ALA ALA R . n B 2 103 PRO 103 127 127 PRO PRO R . n B 2 104 CYS 104 128 128 CYS CYS R . n B 2 105 PRO 105 129 129 PRO PRO R . n B 2 106 PRO 106 130 130 PRO PRO R . n B 2 107 GLY 107 131 131 GLY GLY R . n B 2 108 HIS 108 132 132 HIS HIS R . n B 2 109 PHE 109 133 133 PHE PHE R . n B 2 110 SER 110 134 134 SER SER R . n B 2 111 PRO 111 135 135 PRO PRO R . n B 2 112 GLY 112 136 136 GLY GLY R . n B 2 113 ASP 113 137 137 ASP ASP R . n B 2 114 ASN 114 138 138 ASN ASN R . n B 2 115 GLN 115 139 139 GLN GLN R . n B 2 116 ALA 116 140 140 ALA ALA R . n B 2 117 CYS 117 141 141 CYS CYS R . n B 2 118 LYS 118 142 142 LYS LYS R . n B 2 119 PRO 119 143 143 PRO PRO R . n B 2 120 TRP 120 144 144 TRP TRP R . n B 2 121 THR 121 145 145 THR THR R . n B 2 122 ASN 122 146 146 ASN ASN R . n B 2 123 CYS 123 147 147 CYS CYS R . n B 2 124 THR 124 148 148 THR THR R . n B 2 125 LEU 125 149 149 LEU LEU R . n B 2 126 ALA 126 150 150 ALA ALA R . n B 2 127 GLY 127 151 151 GLY GLY R . n B 2 128 LYS 128 152 152 LYS LYS R . n B 2 129 HIS 129 153 153 HIS HIS R . n B 2 130 THR 130 154 154 THR THR R . n B 2 131 LEU 131 155 155 LEU LEU R . n B 2 132 GLN 132 156 156 GLN GLN R . n B 2 133 PRO 133 157 157 PRO PRO R . n B 2 134 ALA 134 158 158 ALA ALA R . n B 2 135 SER 135 159 159 SER SER R . n B 2 136 ASN 136 160 160 ASN ASN R . n B 2 137 SER 137 161 161 SER SER R . n B 2 138 SER 138 162 162 SER SER R . n B 2 139 ASP 139 163 163 ASP ASP R . n B 2 140 ALA 140 164 164 ALA ALA R . n B 2 141 ILE 141 165 165 ILE ILE R . n B 2 142 CYS 142 166 166 CYS CYS R . n B 2 143 GLU 143 167 167 GLU GLU R . n B 2 144 ASP 144 168 168 ASP ASP R . n B 2 145 ARG 145 169 ? ? ? R . n B 2 146 ASP 146 170 ? ? ? R . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 200 200 NAG NAG F . D 3 NAG 1 200 200 NAG NAG R . E 4 HOH 1 201 1 HOH HOH F . E 4 HOH 2 202 2 HOH HOH F . E 4 HOH 3 203 3 HOH HOH F . E 4 HOH 4 204 4 HOH HOH F . E 4 HOH 5 205 5 HOH HOH F . E 4 HOH 6 206 6 HOH HOH F . E 4 HOH 7 207 7 HOH HOH F . E 4 HOH 8 208 9 HOH HOH F . E 4 HOH 9 209 12 HOH HOH F . E 4 HOH 10 210 13 HOH HOH F . E 4 HOH 11 211 16 HOH HOH F . E 4 HOH 12 212 17 HOH HOH F . E 4 HOH 13 213 20 HOH HOH F . E 4 HOH 14 214 21 HOH HOH F . E 4 HOH 15 215 22 HOH HOH F . E 4 HOH 16 216 26 HOH HOH F . E 4 HOH 17 217 27 HOH HOH F . E 4 HOH 18 218 28 HOH HOH F . E 4 HOH 19 219 29 HOH HOH F . E 4 HOH 20 220 30 HOH HOH F . E 4 HOH 21 221 31 HOH HOH F . E 4 HOH 22 222 32 HOH HOH F . E 4 HOH 23 223 33 HOH HOH F . E 4 HOH 24 224 34 HOH HOH F . E 4 HOH 25 225 37 HOH HOH F . E 4 HOH 26 226 39 HOH HOH F . E 4 HOH 27 227 40 HOH HOH F . E 4 HOH 28 228 41 HOH HOH F . E 4 HOH 29 229 42 HOH HOH F . E 4 HOH 30 230 43 HOH HOH F . E 4 HOH 31 231 47 HOH HOH F . E 4 HOH 32 232 48 HOH HOH F . E 4 HOH 33 233 49 HOH HOH F . E 4 HOH 34 234 50 HOH HOH F . E 4 HOH 35 235 51 HOH HOH F . E 4 HOH 36 236 53 HOH HOH F . E 4 HOH 37 237 56 HOH HOH F . E 4 HOH 38 238 59 HOH HOH F . E 4 HOH 39 239 61 HOH HOH F . E 4 HOH 40 240 62 HOH HOH F . E 4 HOH 41 241 68 HOH HOH F . E 4 HOH 42 242 72 HOH HOH F . E 4 HOH 43 243 73 HOH HOH F . E 4 HOH 44 244 74 HOH HOH F . E 4 HOH 45 245 76 HOH HOH F . E 4 HOH 46 246 77 HOH HOH F . E 4 HOH 47 247 78 HOH HOH F . E 4 HOH 48 248 89 HOH HOH F . E 4 HOH 49 249 90 HOH HOH F . E 4 HOH 50 250 91 HOH HOH F . E 4 HOH 51 251 92 HOH HOH F . E 4 HOH 52 252 93 HOH HOH F . E 4 HOH 53 253 94 HOH HOH F . E 4 HOH 54 254 95 HOH HOH F . E 4 HOH 55 255 96 HOH HOH F . F 4 HOH 1 201 8 HOH HOH R . F 4 HOH 2 202 10 HOH HOH R . F 4 HOH 3 203 11 HOH HOH R . F 4 HOH 4 204 14 HOH HOH R . F 4 HOH 5 205 15 HOH HOH R . F 4 HOH 6 206 18 HOH HOH R . F 4 HOH 7 207 19 HOH HOH R . F 4 HOH 8 208 23 HOH HOH R . F 4 HOH 9 209 25 HOH HOH R . F 4 HOH 10 210 35 HOH HOH R . F 4 HOH 11 211 38 HOH HOH R . F 4 HOH 12 212 44 HOH HOH R . F 4 HOH 13 213 45 HOH HOH R . F 4 HOH 14 214 46 HOH HOH R . F 4 HOH 15 215 52 HOH HOH R . F 4 HOH 16 216 54 HOH HOH R . F 4 HOH 17 217 55 HOH HOH R . F 4 HOH 18 218 58 HOH HOH R . F 4 HOH 19 219 65 HOH HOH R . F 4 HOH 20 220 67 HOH HOH R . F 4 HOH 21 221 70 HOH HOH R . F 4 HOH 22 222 71 HOH HOH R . F 4 HOH 23 223 79 HOH HOH R . F 4 HOH 24 224 80 HOH HOH R . F 4 HOH 25 225 81 HOH HOH R . F 4 HOH 26 226 82 HOH HOH R . F 4 HOH 27 227 83 HOH HOH R . F 4 HOH 28 228 84 HOH HOH R . F 4 HOH 29 229 85 HOH HOH R . F 4 HOH 30 230 86 HOH HOH R . F 4 HOH 31 231 87 HOH HOH R . F 4 HOH 32 232 88 HOH HOH R . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 106 F ASN 152 ? ASN 'GLYCOSYLATION SITE' 2 B ASN 136 R ASN 160 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 55.9515000000 0.8660254038 -0.5000000000 0.0000000000 96.9108407597 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -55.9515000000 -0.8660254038 -0.5000000000 0.0000000000 96.9108407597 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id F _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 201 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-29 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-07-29 5 'Structure model' 1 4 2021-10-20 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Refinement description' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' Advisory 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' 'Structure summary' 10 5 'Structure model' Advisory 11 5 'Structure model' 'Database references' 12 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' entity 3 4 'Structure model' pdbx_chem_comp_identifier 4 4 'Structure model' pdbx_entity_nonpoly 5 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif 8 4 'Structure model' struct_site 9 4 'Structure model' struct_site_gen 10 5 'Structure model' chem_comp 11 5 'Structure model' database_2 12 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 13 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity.pdbx_description' 4 4 'Structure model' '_pdbx_entity_nonpoly.name' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_conn.pdbx_role' 7 4 'Structure model' '_struct_ref_seq_dif.details' 8 5 'Structure model' '_chem_comp.pdbx_synonyms' 9 5 'Structure model' '_database_2.pdbx_DOI' 10 5 'Structure model' '_database_2.pdbx_database_accession' 11 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -7.8785 50.6023 72.1994 -0.1062 -0.1850 -0.0686 0.0015 0.0020 -0.0049 3.8381 2.1796 4.3252 -0.8241 -2.1881 0.5823 -0.2276 0.0664 0.1612 -0.0799 -0.4435 0.2325 0.1453 0.4190 -0.0636 'X-RAY DIFFRACTION' 2 ? refined 13.7010 41.2586 66.6269 -0.0682 -0.1533 -0.0925 0.0389 0.0388 0.0193 1.9807 2.6417 11.0623 -0.2957 2.3891 1.0837 0.1067 -0.2205 0.1138 0.2259 -0.2228 -0.0924 -0.2702 0.1546 0.3839 'X-RAY DIFFRACTION' 3 ? refined 11.6952 43.2929 95.7162 0.1892 -0.1001 -0.0550 0.0496 0.0457 0.0097 3.7438 10.2790 17.8915 3.7855 -2.0543 -12.4767 0.3741 0.1023 -0.4764 0.4377 0.5374 0.4310 1.1423 -1.4776 -0.6530 'X-RAY DIFFRACTION' 4 ? refined 8.7716 33.7127 113.0385 0.3210 0.1111 -0.1255 -0.0831 0.0000 -0.0175 12.7405 12.4875 34.5604 2.0421 -12.3548 -14.4159 0.1582 -0.4932 0.3350 -1.6300 -0.6502 0.1028 1.3331 -1.0266 1.5312 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 F 58 F 183 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 R 29 R 108 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 R 109 R 140 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 R 141 R 168 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 AMoRE phasing . ? 2 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 F _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 230 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 F _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 237 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.14 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O F HOH 255 ? ? 1_555 O R HOH 225 ? ? 3_565 1.87 2 1 O F HOH 222 ? ? 1_555 O R HOH 224 ? ? 3_565 2.18 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 F _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 172 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 F _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 172 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 F _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 172 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 130.31 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation 15.01 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR F 67 ? ? -132.85 -43.04 2 1 GLU F 72 ? ? -106.97 51.80 3 1 LYS F 73 ? ? -161.44 -29.47 4 1 ASN F 136 ? ? -156.01 83.75 5 1 LYS F 146 ? ? 94.56 -19.46 6 1 ASP R 34 ? ? -99.00 52.27 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 R ARG 90 ? CB ? B ARG 66 CB 2 1 Y 0 R ARG 90 ? CG ? B ARG 66 CG 3 1 Y 0 R ARG 90 ? CD ? B ARG 66 CD 4 1 Y 0 R ARG 90 ? NE ? B ARG 66 NE 5 1 Y 0 R ARG 90 ? CZ ? B ARG 66 CZ 6 1 Y 0 R ARG 90 ? NH1 ? B ARG 66 NH1 7 1 Y 0 R ARG 90 ? NH2 ? B ARG 66 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 F GLY 47 ? A GLY 1 2 1 Y 1 F SER 48 ? A SER 2 3 1 Y 1 F HIS 49 ? A HIS 3 4 1 Y 1 F MET 50 ? A MET 4 5 1 Y 1 F GLN 51 ? A GLN 5 6 1 Y 1 F VAL 52 ? A VAL 6 7 1 Y 1 F SER 53 ? A SER 7 8 1 Y 1 F HIS 54 ? A HIS 8 9 1 Y 1 F ARG 55 ? A ARG 9 10 1 Y 1 F TYR 56 ? A TYR 10 11 1 Y 1 F PRO 57 ? A PRO 11 12 1 Y 1 R GLY 25 ? B GLY 1 13 1 Y 1 R SER 26 ? B SER 2 14 1 Y 1 R HIS 27 ? B HIS 3 15 1 Y 1 R MET 28 ? B MET 4 16 1 Y 1 R ARG 169 ? B ARG 145 17 1 Y 1 R ASP 170 ? B ASP 146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 water HOH #