data_2HH6 # _entry.id 2HH6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HH6 pdb_00002hh6 10.2210/pdb2hh6/pdb RCSB RCSB038343 ? ? WWPDB D_1000038343 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 361188 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2HH6 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-06-27 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of BH3980 (10176605) from BACILLUS HALODURANS at 2.04 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 2HH6 _cell.length_a 93.540 _cell.length_b 93.540 _cell.length_c 115.320 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HH6 _symmetry.Int_Tables_number 179 _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'BH3980 protein' 13261.146 1 ? ? ? ? 2 water nat water 18.015 78 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)SFIEK(MSE)IGSLNDKREWKA(MSE)EARAKALPKEYHHAYKAIQKY(MSE)WTSGGPTDWQDTKRIFGGILD LFEEGAAEGKKVTDLTGEDVAAFCDEL(MSE)KDTKTW(MSE)DKYRTKLNDSIGRD ; _entity_poly.pdbx_seq_one_letter_code_can ;GMSFIEKMIGSLNDKREWKAMEARAKALPKEYHHAYKAIQKYMWTSGGPTDWQDTKRIFGGILDLFEEGAAEGKKVTDLT GEDVAAFCDELMKDTKTWMDKYRTKLNDSIGRD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 361188 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 SER n 1 4 PHE n 1 5 ILE n 1 6 GLU n 1 7 LYS n 1 8 MSE n 1 9 ILE n 1 10 GLY n 1 11 SER n 1 12 LEU n 1 13 ASN n 1 14 ASP n 1 15 LYS n 1 16 ARG n 1 17 GLU n 1 18 TRP n 1 19 LYS n 1 20 ALA n 1 21 MSE n 1 22 GLU n 1 23 ALA n 1 24 ARG n 1 25 ALA n 1 26 LYS n 1 27 ALA n 1 28 LEU n 1 29 PRO n 1 30 LYS n 1 31 GLU n 1 32 TYR n 1 33 HIS n 1 34 HIS n 1 35 ALA n 1 36 TYR n 1 37 LYS n 1 38 ALA n 1 39 ILE n 1 40 GLN n 1 41 LYS n 1 42 TYR n 1 43 MSE n 1 44 TRP n 1 45 THR n 1 46 SER n 1 47 GLY n 1 48 GLY n 1 49 PRO n 1 50 THR n 1 51 ASP n 1 52 TRP n 1 53 GLN n 1 54 ASP n 1 55 THR n 1 56 LYS n 1 57 ARG n 1 58 ILE n 1 59 PHE n 1 60 GLY n 1 61 GLY n 1 62 ILE n 1 63 LEU n 1 64 ASP n 1 65 LEU n 1 66 PHE n 1 67 GLU n 1 68 GLU n 1 69 GLY n 1 70 ALA n 1 71 ALA n 1 72 GLU n 1 73 GLY n 1 74 LYS n 1 75 LYS n 1 76 VAL n 1 77 THR n 1 78 ASP n 1 79 LEU n 1 80 THR n 1 81 GLY n 1 82 GLU n 1 83 ASP n 1 84 VAL n 1 85 ALA n 1 86 ALA n 1 87 PHE n 1 88 CYS n 1 89 ASP n 1 90 GLU n 1 91 LEU n 1 92 MSE n 1 93 LYS n 1 94 ASP n 1 95 THR n 1 96 LYS n 1 97 THR n 1 98 TRP n 1 99 MSE n 1 100 ASP n 1 101 LYS n 1 102 TYR n 1 103 ARG n 1 104 THR n 1 105 LYS n 1 106 LEU n 1 107 ASN n 1 108 ASP n 1 109 SER n 1 110 ILE n 1 111 GLY n 1 112 ARG n 1 113 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacillus _entity_src_gen.pdbx_gene_src_gene 10176605 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus halodurans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 86665 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9K5V7_BACHD _struct_ref.pdbx_db_accession Q9K5V7 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HH6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 113 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9K5V7 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 112 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 112 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2HH6 GLY A 1 ? UNP Q9K5V7 ? ? 'expression tag' 0 1 1 2HH6 MSE A 2 ? UNP Q9K5V7 MET 1 'modified residue' 1 2 1 2HH6 MSE A 8 ? UNP Q9K5V7 MET 7 'modified residue' 7 3 1 2HH6 MSE A 21 ? UNP Q9K5V7 MET 20 'modified residue' 20 4 1 2HH6 MSE A 43 ? UNP Q9K5V7 MET 42 'modified residue' 42 5 1 2HH6 MSE A 92 ? UNP Q9K5V7 MET 91 'modified residue' 91 6 1 2HH6 MSE A 99 ? UNP Q9K5V7 MET 98 'modified residue' 98 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2HH6 # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 76.43 _exptl_crystal.density_Matthews 5.26 _exptl_crystal.description ;THE STRUCTURE WAS INITIALLY PHASED USING PEAK DATA COLLECTED ON SSRL BEAMLINE 11-1. A LOW RESOLUTION PASS TO FILL IN OVERLOADED REFLECTIONS WAS COLLECTED LATER ON SSRL BEAMLINE 1-5. THE TWO SWEEPS WERE MERGED FOR REFINEMENT. ALL DATA WAS COLLECTED AT THE PEAK WAVELENGTH FROM A SELENIUM SAD EXPERIMENT. THE PEAK WAVELENGTH ON EACH BEAMLINE WAS SELECTED USING CHOOCH FROM AN X-RAY FLUORESCENCE SCAN COLLECTED ON THAT BEAMLINE. THE STATISTICS DESCRIBED ABOVE ARE FOR THE MERGED DATA. ; _exptl_crystal.density_meas ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION,SITTING DROP,NANODROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '2.0M (NH4)2SO4, 0.1M TRIS pH 8.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.details _diffrn_detector.pdbx_collection_date 1 CCD 'ADSC QUANTUM 315' '1m long Rh coated bent cylindrical mirror forhorizontal and vertical focussing' 2006-05-26 2 CCD 'ADSC Q315' 'Flat mirror (vertical focusing)' 2006-04-09 # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_scattering_type 1 M 'Double-crystal monochromator' 'SINGLE WAVELENGTH' 1 x-ray 2 M 'Single crystal Si(111) bent monochromator (horizontal focusing)' 'SINGLE WAVELENGTH' 1 x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979075 _diffrn_radiation_wavelength.wt 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.type _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_synchrotron_site 1 SYNCHROTRON BL1-5 'SSRL BEAMLINE BL1-5' ? 0.979075 SSRL 2 SYNCHROTRON BL11-1 'SSRL BEAMLINE BL11-1' ? 0.979075 SSRL # _reflns.entry_id 2HH6 _reflns.d_resolution_high 2.040 _reflns.d_resolution_low 46.984 _reflns.number_obs 19622 _reflns.pdbx_Rmerge_I_obs 0.098 _reflns.pdbx_netI_over_sigmaI 12.240 _reflns.percent_possible_obs 98.100 _reflns.B_iso_Wilson_estimate 40.266 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.04 2.11 24091 ? ? 0.893 2.2 ? ? ? ? 3296 95.30 1 1,2 2.11 2.20 28381 ? ? 0.673 3.0 ? ? ? ? 3728 97.50 2 1,2 2.20 2.30 26555 ? ? 0.589 3.4 ? ? ? ? 3494 97.90 3 1,2 2.30 2.42 26710 ? ? 0.463 4.3 ? ? ? ? 3499 98.10 4 1,2 2.42 2.57 26514 ? ? 0.364 5.4 ? ? ? ? 3465 97.70 5 1,2 2.57 2.77 27193 ? ? 0.239 7.7 ? ? ? ? 3566 98.40 6 1,2 2.77 3.04 26511 ? ? 0.156 11.0 ? ? ? ? 3465 98.60 7 1,2 3.04 3.48 27470 ? ? 0.078 19.8 ? ? ? ? 3607 99.70 8 1,2 3.48 46.98 27153 ? ? 0.05 29.0 ? ? ? ? 3607 99.80 9 1,2 # _refine.entry_id 2HH6 _refine.ls_d_res_high 2.040 _refine.ls_d_res_low 46.984 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.980 _refine.ls_number_reflns_obs 19577 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 1) ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 2) HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 3) A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4) ELECTRON DENSITY MAPS INDICATE THAT SEVERAL SIDECHAINS INCLUDING TRP 17 AND TRP 43 ARE DISORDERED. 5) UNEXPLAINED DIFFERENCE ELECTRON DENSITIES WERE OBSERVED AT SEVERAL LOCATIONS AND COULD NOT BE RELIABLY MODELED. ; _refine.ls_R_factor_all 0.225 _refine.ls_R_factor_R_work 0.224 _refine.ls_R_factor_R_free 0.238 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 999 _refine.B_iso_mean 30.351 _refine.aniso_B[1][1] 0.000 _refine.aniso_B[2][2] 0.000 _refine.aniso_B[3][3] 0.000 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.946 _refine.correlation_coeff_Fo_to_Fc_free 0.938 _refine.pdbx_overall_ESU_R 0.121 _refine.pdbx_overall_ESU_R_Free 0.114 _refine.overall_SU_ML 0.102 _refine.overall_SU_B 7.403 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs 0.22491 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 888 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 78 _refine_hist.number_atoms_total 966 _refine_hist.d_res_high 2.040 _refine_hist.d_res_low 46.984 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 936 0.016 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 826 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1267 1.053 1.932 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1924 0.720 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 119 4.790 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 44 31.297 24.773 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 170 14.017 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 4 20.700 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 130 0.063 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1053 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 194 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 229 0.210 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 794 0.170 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 477 0.189 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 523 0.087 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 60 0.209 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 6 0.350 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 56 0.200 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 7 0.070 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 605 2.126 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 237 0.416 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 904 2.763 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 425 5.071 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 359 6.446 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.040 _refine_ls_shell.d_res_low 2.093 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 1343 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.34 _refine_ls_shell.R_factor_R_free 0.35 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 78 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1421 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2HH6 _struct.title 'Crystal structure of BH3980 (10176605) from BACILLUS HALODURANS at 2.04 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;10176605, BH3980, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, unknown function ; _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, unknown function' _struct_keywords.entry_id 2HH6 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MSE A 2 ? LEU A 28 ? MSE A 1 LEU A 27 1 ? 27 HELX_P HELX_P2 2 PRO A 29 ? TRP A 44 ? PRO A 28 TRP A 43 1 ? 16 HELX_P HELX_P3 3 ASP A 51 ? GLU A 72 ? ASP A 50 GLU A 71 1 ? 22 HELX_P HELX_P4 4 LYS A 75 ? GLY A 81 ? LYS A 74 GLY A 80 1 ? 7 HELX_P HELX_P5 5 ASP A 83 ? LYS A 93 ? ASP A 82 LYS A 92 1 ? 11 HELX_P HELX_P6 6 THR A 97 ? GLY A 111 ? THR A 96 GLY A 110 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 2 C ? ? ? 1_555 A SER 3 N ? ? A MSE 1 A SER 2 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? A LYS 7 C ? ? ? 1_555 A MSE 8 N ? ? A LYS 6 A MSE 7 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale3 covale both ? A MSE 8 C ? ? ? 1_555 A ILE 9 N ? ? A MSE 7 A ILE 8 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A ALA 20 C ? ? ? 1_555 A MSE 21 N ? ? A ALA 19 A MSE 20 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale5 covale both ? A MSE 21 C ? ? ? 1_555 A GLU 22 N ? ? A MSE 20 A GLU 21 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale6 covale both ? A TYR 42 C ? ? ? 1_555 A MSE 43 N ? ? A TYR 41 A MSE 42 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale7 covale both ? A MSE 43 C ? ? ? 1_555 A TRP 44 N ? ? A MSE 42 A TRP 43 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale8 covale both ? A LEU 91 C ? ? ? 1_555 A MSE 92 N ? ? A LEU 90 A MSE 91 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale9 covale both ? A MSE 92 C ? ? ? 1_555 A LYS 93 N ? ? A MSE 91 A LYS 92 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale10 covale both ? A TRP 98 C ? ? ? 1_555 A MSE 99 N ? ? A TRP 97 A MSE 98 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale11 covale both ? A MSE 99 C ? ? ? 1_555 A ASP 100 N ? ? A MSE 98 A ASP 99 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 2HH6 _atom_sites.fract_transf_matrix[1][1] 0.01069 _atom_sites.fract_transf_matrix[1][2] 0.00617 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01234 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.00867 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 SER 3 2 2 SER SER A . n A 1 4 PHE 4 3 3 PHE PHE A . n A 1 5 ILE 5 4 4 ILE ILE A . n A 1 6 GLU 6 5 5 GLU GLU A . n A 1 7 LYS 7 6 6 LYS LYS A . n A 1 8 MSE 8 7 7 MSE MSE A . n A 1 9 ILE 9 8 8 ILE ILE A . n A 1 10 GLY 10 9 9 GLY GLY A . n A 1 11 SER 11 10 10 SER SER A . n A 1 12 LEU 12 11 11 LEU LEU A . n A 1 13 ASN 13 12 12 ASN ASN A . n A 1 14 ASP 14 13 13 ASP ASP A . n A 1 15 LYS 15 14 14 LYS LYS A . n A 1 16 ARG 16 15 15 ARG ARG A . n A 1 17 GLU 17 16 16 GLU GLU A . n A 1 18 TRP 18 17 17 TRP TRP A . n A 1 19 LYS 19 18 18 LYS LYS A . n A 1 20 ALA 20 19 19 ALA ALA A . n A 1 21 MSE 21 20 20 MSE MSE A . n A 1 22 GLU 22 21 21 GLU GLU A . n A 1 23 ALA 23 22 22 ALA ALA A . n A 1 24 ARG 24 23 23 ARG ARG A . n A 1 25 ALA 25 24 24 ALA ALA A . n A 1 26 LYS 26 25 25 LYS LYS A . n A 1 27 ALA 27 26 26 ALA ALA A . n A 1 28 LEU 28 27 27 LEU LEU A . n A 1 29 PRO 29 28 28 PRO PRO A . n A 1 30 LYS 30 29 29 LYS LYS A . n A 1 31 GLU 31 30 30 GLU GLU A . n A 1 32 TYR 32 31 31 TYR TYR A . n A 1 33 HIS 33 32 32 HIS HIS A . n A 1 34 HIS 34 33 33 HIS HIS A . n A 1 35 ALA 35 34 34 ALA ALA A . n A 1 36 TYR 36 35 35 TYR TYR A . n A 1 37 LYS 37 36 36 LYS LYS A . n A 1 38 ALA 38 37 37 ALA ALA A . n A 1 39 ILE 39 38 38 ILE ILE A . n A 1 40 GLN 40 39 39 GLN GLN A . n A 1 41 LYS 41 40 40 LYS LYS A . n A 1 42 TYR 42 41 41 TYR TYR A . n A 1 43 MSE 43 42 42 MSE MSE A . n A 1 44 TRP 44 43 43 TRP TRP A . n A 1 45 THR 45 44 44 THR THR A . n A 1 46 SER 46 45 45 SER SER A . n A 1 47 GLY 47 46 46 GLY GLY A . n A 1 48 GLY 48 47 47 GLY GLY A . n A 1 49 PRO 49 48 48 PRO PRO A . n A 1 50 THR 50 49 49 THR THR A . n A 1 51 ASP 51 50 50 ASP ASP A . n A 1 52 TRP 52 51 51 TRP TRP A . n A 1 53 GLN 53 52 52 GLN GLN A . n A 1 54 ASP 54 53 53 ASP ASP A . n A 1 55 THR 55 54 54 THR THR A . n A 1 56 LYS 56 55 55 LYS LYS A . n A 1 57 ARG 57 56 56 ARG ARG A . n A 1 58 ILE 58 57 57 ILE ILE A . n A 1 59 PHE 59 58 58 PHE PHE A . n A 1 60 GLY 60 59 59 GLY GLY A . n A 1 61 GLY 61 60 60 GLY GLY A . n A 1 62 ILE 62 61 61 ILE ILE A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 ASP 64 63 63 ASP ASP A . n A 1 65 LEU 65 64 64 LEU LEU A . n A 1 66 PHE 66 65 65 PHE PHE A . n A 1 67 GLU 67 66 66 GLU GLU A . n A 1 68 GLU 68 67 67 GLU GLU A . n A 1 69 GLY 69 68 68 GLY GLY A . n A 1 70 ALA 70 69 69 ALA ALA A . n A 1 71 ALA 71 70 70 ALA ALA A . n A 1 72 GLU 72 71 71 GLU GLU A . n A 1 73 GLY 73 72 72 GLY GLY A . n A 1 74 LYS 74 73 73 LYS LYS A . n A 1 75 LYS 75 74 74 LYS LYS A . n A 1 76 VAL 76 75 75 VAL VAL A . n A 1 77 THR 77 76 76 THR THR A . n A 1 78 ASP 78 77 77 ASP ASP A . n A 1 79 LEU 79 78 78 LEU LEU A . n A 1 80 THR 80 79 79 THR THR A . n A 1 81 GLY 81 80 80 GLY GLY A . n A 1 82 GLU 82 81 81 GLU GLU A . n A 1 83 ASP 83 82 82 ASP ASP A . n A 1 84 VAL 84 83 83 VAL VAL A . n A 1 85 ALA 85 84 84 ALA ALA A . n A 1 86 ALA 86 85 85 ALA ALA A . n A 1 87 PHE 87 86 86 PHE PHE A . n A 1 88 CYS 88 87 87 CYS CYS A . n A 1 89 ASP 89 88 88 ASP ASP A . n A 1 90 GLU 90 89 89 GLU GLU A . n A 1 91 LEU 91 90 90 LEU LEU A . n A 1 92 MSE 92 91 91 MSE MSE A . n A 1 93 LYS 93 92 92 LYS LYS A . n A 1 94 ASP 94 93 93 ASP ASP A . n A 1 95 THR 95 94 94 THR THR A . n A 1 96 LYS 96 95 95 LYS LYS A . n A 1 97 THR 97 96 96 THR THR A . n A 1 98 TRP 98 97 97 TRP TRP A . n A 1 99 MSE 99 98 98 MSE MSE A . n A 1 100 ASP 100 99 99 ASP ASP A . n A 1 101 LYS 101 100 100 LYS LYS A . n A 1 102 TYR 102 101 101 TYR TYR A . n A 1 103 ARG 103 102 102 ARG ARG A . n A 1 104 THR 104 103 103 THR THR A . n A 1 105 LYS 105 104 104 LYS LYS A . n A 1 106 LEU 106 105 105 LEU LEU A . n A 1 107 ASN 107 106 106 ASN ASN A . n A 1 108 ASP 108 107 107 ASP ASP A . n A 1 109 SER 109 108 108 SER SER A . n A 1 110 ILE 110 109 109 ILE ILE A . n A 1 111 GLY 111 110 110 GLY GLY A . n A 1 112 ARG 112 111 111 ARG ARG A . n A 1 113 ASP 113 112 112 ASP ASP A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 113 1 HOH HOH A . B 2 HOH 2 114 2 HOH HOH A . B 2 HOH 3 115 3 HOH HOH A . B 2 HOH 4 116 4 HOH HOH A . B 2 HOH 5 117 5 HOH HOH A . B 2 HOH 6 118 6 HOH HOH A . B 2 HOH 7 119 7 HOH HOH A . B 2 HOH 8 120 8 HOH HOH A . B 2 HOH 9 121 9 HOH HOH A . B 2 HOH 10 122 10 HOH HOH A . B 2 HOH 11 123 11 HOH HOH A . B 2 HOH 12 124 12 HOH HOH A . B 2 HOH 13 125 13 HOH HOH A . B 2 HOH 14 126 14 HOH HOH A . B 2 HOH 15 127 15 HOH HOH A . B 2 HOH 16 128 16 HOH HOH A . B 2 HOH 17 129 17 HOH HOH A . B 2 HOH 18 130 18 HOH HOH A . B 2 HOH 19 131 19 HOH HOH A . B 2 HOH 20 132 20 HOH HOH A . B 2 HOH 21 133 21 HOH HOH A . B 2 HOH 22 134 22 HOH HOH A . B 2 HOH 23 135 23 HOH HOH A . B 2 HOH 24 136 24 HOH HOH A . B 2 HOH 25 137 25 HOH HOH A . B 2 HOH 26 138 26 HOH HOH A . B 2 HOH 27 139 27 HOH HOH A . B 2 HOH 28 140 28 HOH HOH A . B 2 HOH 29 141 29 HOH HOH A . B 2 HOH 30 142 30 HOH HOH A . B 2 HOH 31 143 31 HOH HOH A . B 2 HOH 32 144 32 HOH HOH A . B 2 HOH 33 145 33 HOH HOH A . B 2 HOH 34 146 34 HOH HOH A . B 2 HOH 35 147 35 HOH HOH A . B 2 HOH 36 148 36 HOH HOH A . B 2 HOH 37 149 37 HOH HOH A . B 2 HOH 38 150 38 HOH HOH A . B 2 HOH 39 151 39 HOH HOH A . B 2 HOH 40 152 40 HOH HOH A . B 2 HOH 41 153 41 HOH HOH A . B 2 HOH 42 154 42 HOH HOH A . B 2 HOH 43 155 43 HOH HOH A . B 2 HOH 44 156 45 HOH HOH A . B 2 HOH 45 157 46 HOH HOH A . B 2 HOH 46 158 47 HOH HOH A . B 2 HOH 47 159 48 HOH HOH A . B 2 HOH 48 160 49 HOH HOH A . B 2 HOH 49 161 50 HOH HOH A . B 2 HOH 50 162 51 HOH HOH A . B 2 HOH 51 163 52 HOH HOH A . B 2 HOH 52 164 53 HOH HOH A . B 2 HOH 53 165 54 HOH HOH A . B 2 HOH 54 166 55 HOH HOH A . B 2 HOH 55 167 56 HOH HOH A . B 2 HOH 56 168 57 HOH HOH A . B 2 HOH 57 169 58 HOH HOH A . B 2 HOH 58 170 59 HOH HOH A . B 2 HOH 59 171 60 HOH HOH A . B 2 HOH 60 172 61 HOH HOH A . B 2 HOH 61 173 62 HOH HOH A . B 2 HOH 62 174 63 HOH HOH A . B 2 HOH 63 175 64 HOH HOH A . B 2 HOH 64 176 65 HOH HOH A . B 2 HOH 65 177 66 HOH HOH A . B 2 HOH 66 178 67 HOH HOH A . B 2 HOH 67 179 68 HOH HOH A . B 2 HOH 68 180 69 HOH HOH A . B 2 HOH 69 181 70 HOH HOH A . B 2 HOH 70 182 71 HOH HOH A . B 2 HOH 71 183 72 HOH HOH A . B 2 HOH 72 184 73 HOH HOH A . B 2 HOH 73 185 74 HOH HOH A . B 2 HOH 74 186 75 HOH HOH A . B 2 HOH 75 187 76 HOH HOH A . B 2 HOH 76 188 77 HOH HOH A . B 2 HOH 77 189 78 HOH HOH A . B 2 HOH 78 190 79 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 8 A MSE 7 ? MET SELENOMETHIONINE 3 A MSE 21 A MSE 20 ? MET SELENOMETHIONINE 4 A MSE 43 A MSE 42 ? MET SELENOMETHIONINE 5 A MSE 92 A MSE 91 ? MET SELENOMETHIONINE 6 A MSE 99 A MSE 98 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2540 ? 1 MORE -14 ? 1 'SSA (A^2)' 13040 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5000000000 -0.8660254038 0.0000000000 46.7700000000 -0.8660254038 -0.5000000000 0.0000000000 81.0080162700 0.0000000000 0.0000000000 -1.0000000000 19.2200000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 137 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-22 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 24.9840 19.5100 0.7880 0.2117 0.1629 -0.1826 0.0738 0.0087 -0.0128 1.5962 4.0293 0.7488 -0.8501 1.0236 -1.1202 -0.0175 0.0147 0.0028 0.0448 -0.0912 0.0428 0.3719 0.0133 0.2666 'X-RAY DIFFRACTION' 2 ? refined 18.7730 31.9350 5.0110 0.1898 0.1380 -0.1619 -0.0059 -0.0075 -0.0289 1.2372 1.6556 6.3876 1.0819 2.0254 2.5206 0.0600 -0.1345 0.0745 -0.0360 0.1466 0.1649 0.1563 -0.4018 0.0299 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 2 A 43 ALL A 1 A 42 'X-RAY DIFFRACTION' ? 2 2 A 44 A 113 ALL A 43 A 112 'X-RAY DIFFRACTION' ? # _phasing.method SAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 1 REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 2 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG: MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 43 ? ? -81.51 34.93 2 1 THR A 44 ? ? -124.01 -164.31 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 6 ? CE ? A LYS 7 CE 2 1 Y 1 A LYS 6 ? NZ ? A LYS 7 NZ 3 1 Y 1 A LYS 14 ? NZ ? A LYS 15 NZ 4 1 Y 1 A LYS 29 ? CE ? A LYS 30 CE 5 1 Y 1 A LYS 29 ? NZ ? A LYS 30 NZ 6 1 Y 1 A LYS 36 ? CE ? A LYS 37 CE 7 1 Y 1 A LYS 36 ? NZ ? A LYS 37 NZ 8 1 Y 1 A LYS 40 ? NZ ? A LYS 41 NZ 9 1 Y 1 A LYS 92 ? CE ? A LYS 93 CE 10 1 Y 1 A LYS 92 ? NZ ? A LYS 93 NZ 11 1 Y 1 A LYS 95 ? NZ ? A LYS 96 NZ 12 1 Y 1 A LYS 104 ? CE ? A LYS 105 CE 13 1 Y 1 A LYS 104 ? NZ ? A LYS 105 NZ 14 1 Y 1 A ARG 111 ? NE ? A ARG 112 NE 15 1 Y 1 A ARG 111 ? CZ ? A ARG 112 CZ 16 1 Y 1 A ARG 111 ? NH1 ? A ARG 112 NH1 17 1 Y 1 A ARG 111 ? NH2 ? A ARG 112 NH2 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 0 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #