data_2HLJ # _entry.id 2HLJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HLJ pdb_00002hlj 10.2210/pdb2hlj/pdb RCSB RCSB038484 ? ? WWPDB D_1000038484 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 366984 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2HLJ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-07-07 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of hypothetical protein (NP_742468.1) from Pseudomonas putida KT2440 at 2.00 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 2HLJ _cell.length_a 53.809 _cell.length_b 73.613 _cell.length_c 39.752 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HLJ _symmetry.Int_Tables_number 18 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hypothetical protein' 17917.578 1 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 water nat water 18.015 170 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)PALITYRTTVQEDWVDYNGHLRDAFYLLIFSYATDAL(MSE)DRIGLDADSRGQSGNSLFTLEAHINYLHEVKL GTEVWVQTQILGFDRKRLHVYHSLHRAGFDEVLAASEQ(MSE)LLHVDLAGPQSAPFGHTTVCRLNHLVEQQEGAQAPQY (MSE)GRTIKLPA ; _entity_poly.pdbx_seq_one_letter_code_can ;GMPALITYRTTVQEDWVDYNGHLRDAFYLLIFSYATDALMDRIGLDADSRGQSGNSLFTLEAHINYLHEVKLGTEVWVQT QILGFDRKRLHVYHSLHRAGFDEVLAASEQMLLHVDLAGPQSAPFGHTTVCRLNHLVEQQEGAQAPQYMGRTIKLPA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 366984 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 PRO n 1 4 ALA n 1 5 LEU n 1 6 ILE n 1 7 THR n 1 8 TYR n 1 9 ARG n 1 10 THR n 1 11 THR n 1 12 VAL n 1 13 GLN n 1 14 GLU n 1 15 ASP n 1 16 TRP n 1 17 VAL n 1 18 ASP n 1 19 TYR n 1 20 ASN n 1 21 GLY n 1 22 HIS n 1 23 LEU n 1 24 ARG n 1 25 ASP n 1 26 ALA n 1 27 PHE n 1 28 TYR n 1 29 LEU n 1 30 LEU n 1 31 ILE n 1 32 PHE n 1 33 SER n 1 34 TYR n 1 35 ALA n 1 36 THR n 1 37 ASP n 1 38 ALA n 1 39 LEU n 1 40 MSE n 1 41 ASP n 1 42 ARG n 1 43 ILE n 1 44 GLY n 1 45 LEU n 1 46 ASP n 1 47 ALA n 1 48 ASP n 1 49 SER n 1 50 ARG n 1 51 GLY n 1 52 GLN n 1 53 SER n 1 54 GLY n 1 55 ASN n 1 56 SER n 1 57 LEU n 1 58 PHE n 1 59 THR n 1 60 LEU n 1 61 GLU n 1 62 ALA n 1 63 HIS n 1 64 ILE n 1 65 ASN n 1 66 TYR n 1 67 LEU n 1 68 HIS n 1 69 GLU n 1 70 VAL n 1 71 LYS n 1 72 LEU n 1 73 GLY n 1 74 THR n 1 75 GLU n 1 76 VAL n 1 77 TRP n 1 78 VAL n 1 79 GLN n 1 80 THR n 1 81 GLN n 1 82 ILE n 1 83 LEU n 1 84 GLY n 1 85 PHE n 1 86 ASP n 1 87 ARG n 1 88 LYS n 1 89 ARG n 1 90 LEU n 1 91 HIS n 1 92 VAL n 1 93 TYR n 1 94 HIS n 1 95 SER n 1 96 LEU n 1 97 HIS n 1 98 ARG n 1 99 ALA n 1 100 GLY n 1 101 PHE n 1 102 ASP n 1 103 GLU n 1 104 VAL n 1 105 LEU n 1 106 ALA n 1 107 ALA n 1 108 SER n 1 109 GLU n 1 110 GLN n 1 111 MSE n 1 112 LEU n 1 113 LEU n 1 114 HIS n 1 115 VAL n 1 116 ASP n 1 117 LEU n 1 118 ALA n 1 119 GLY n 1 120 PRO n 1 121 GLN n 1 122 SER n 1 123 ALA n 1 124 PRO n 1 125 PHE n 1 126 GLY n 1 127 HIS n 1 128 THR n 1 129 THR n 1 130 VAL n 1 131 CYS n 1 132 ARG n 1 133 LEU n 1 134 ASN n 1 135 HIS n 1 136 LEU n 1 137 VAL n 1 138 GLU n 1 139 GLN n 1 140 GLN n 1 141 GLU n 1 142 GLY n 1 143 ALA n 1 144 GLN n 1 145 ALA n 1 146 PRO n 1 147 GLN n 1 148 TYR n 1 149 MSE n 1 150 GLY n 1 151 ARG n 1 152 THR n 1 153 ILE n 1 154 LYS n 1 155 LEU n 1 156 PRO n 1 157 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pseudomonas _entity_src_gen.pdbx_gene_src_gene NP_742468.1 _entity_src_gen.gene_src_species 'Pseudomonas putida' _entity_src_gen.gene_src_strain KT2440 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas putida' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 160488 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q88R33_PSEPK _struct_ref.pdbx_db_accession Q88R33 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HLJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 157 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q88R33 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 156 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 156 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2HLJ GLY A 1 ? UNP Q88R33 ? ? 'expression tag' 0 1 1 2HLJ MSE A 2 ? UNP Q88R33 MET 1 'modified residue' 1 2 1 2HLJ MSE A 40 ? UNP Q88R33 MET 39 'modified residue' 39 3 1 2HLJ MSE A 111 ? UNP Q88R33 MET 110 'modified residue' 110 4 1 2HLJ MSE A 149 ? UNP Q88R33 MET 148 'modified residue' 148 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2HLJ # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 44.00 _exptl_crystal.density_Matthews 2.21 _exptl_crystal.description ? _exptl_crystal.density_meas ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP, NANODROP' _exptl_crystal_grow.pH 6.9 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2M K2NO3, 20.0% PEG-3350, No Buffer, pH 6.9, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2006-06-18 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97934 1.0 2 0.97915 1.0 3 0.91837 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list '0.97934, 0.97915, 0.91837' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 2HLJ _reflns.d_resolution_high 2.000 _reflns.d_resolution_low 29.323 _reflns.number_obs 11181 _reflns.pdbx_Rmerge_I_obs 0.085 _reflns.pdbx_netI_over_sigmaI 6.700 _reflns.pdbx_Rsym_value 0.085 _reflns.pdbx_redundancy 3.600 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate 20.20 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.00 2.05 ? 2855 ? 0.287 2.6 0.287 ? 3.60 ? 785 100.00 1 1 2.05 2.11 ? 2892 ? 0.276 2.7 0.276 ? 3.60 ? 795 100.00 2 1 2.11 2.17 ? 2827 ? 0.229 3.3 0.229 ? 3.60 ? 777 100.00 3 1 2.17 2.24 ? 2753 ? 0.224 3.3 0.224 ? 3.70 ? 752 100.00 4 1 2.24 2.31 ? 2632 ? 0.19 3.6 0.19 ? 3.60 ? 728 100.00 5 1 2.31 2.39 ? 2504 ? 0.16 4.6 0.16 ? 3.60 ? 688 100.00 6 1 2.39 2.48 ? 2520 ? 0.154 4.6 0.154 ? 3.60 ? 696 100.00 7 1 2.48 2.58 ? 2333 ? 0.145 5.1 0.145 ? 3.60 ? 641 100.00 8 1 2.58 2.70 ? 2332 ? 0.13 5.6 0.13 ? 3.60 ? 643 100.00 9 1 2.70 2.83 ? 2185 ? 0.095 7.4 0.095 ? 3.60 ? 607 100.00 10 1 2.83 2.98 ? 2034 ? 0.086 8.3 0.086 ? 3.60 ? 565 100.00 11 1 2.98 3.16 ? 1981 ? 0.071 9.3 0.071 ? 3.60 ? 550 100.00 12 1 3.16 3.38 ? 1847 ? 0.068 9.3 0.068 ? 3.50 ? 521 100.00 13 1 3.38 3.65 ? 1747 ? 0.062 9.2 0.062 ? 3.60 ? 491 100.00 14 1 3.65 4.00 ? 1597 ? 0.058 10.2 0.058 ? 3.50 ? 450 100.00 15 1 4.00 4.47 ? 1429 ? 0.049 11.5 0.049 ? 3.50 ? 410 100.00 16 1 4.47 5.16 ? 1257 ? 0.048 12.4 0.048 ? 3.50 ? 363 100.00 17 1 5.16 6.32 ? 1065 ? 0.06 11.0 0.06 ? 3.40 ? 317 100.00 18 1 6.32 8.94 ? 820 ? 0.055 9.9 0.055 ? 3.20 ? 256 99.60 19 1 8.94 29.33 ? 433 ? 0.044 13.1 0.044 ? 3.00 ? 146 94.30 20 1 # _refine.entry_id 2HLJ _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 29.323 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.860 _refine.ls_number_reflns_obs 11154 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 4. RESIDUES 117-119 ARE DISORDERED AND WERE NOT MODELED. 5. GLYCEROL ADDED BASED ON CRYSTALLIZATION CONDITIONS. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.167 _refine.ls_R_factor_R_free 0.227 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 531 _refine.B_iso_mean 21.701 _refine.aniso_B[1][1] -1.320 _refine.aniso_B[2][2] -1.850 _refine.aniso_B[3][3] 3.170 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.928 _refine.pdbx_overall_ESU_R 0.181 _refine.pdbx_overall_ESU_R_Free 0.169 _refine.overall_SU_ML 0.115 _refine.overall_SU_B 7.727 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs 0.17 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1224 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 170 _refine_hist.number_atoms_total 1400 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 29.323 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1273 0.014 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1145 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1731 1.447 1.943 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2645 0.856 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 158 6.354 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 63 36.235 23.651 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 206 12.036 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 13.386 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 193 0.091 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1429 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 269 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 203 0.211 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1106 0.182 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 610 0.175 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 750 0.085 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 118 0.154 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 25 0.226 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 109 0.287 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 14 0.220 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 837 2.219 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 320 0.524 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1238 3.021 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 550 5.220 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 490 6.709 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 745 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.178 _refine_ls_shell.R_factor_R_free 0.237 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 38 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 783 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2HLJ _struct.title 'CRYSTAL STRUCTURE OF A PUTATIVE THIOESTERASE (KT2440) FROM PSEUDOMONAS PUTIDA KT2440 AT 2.00 A RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;PUTATIVE THIOESTERASE, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE ; _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.entry_id 2HLJ # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 13 ? VAL A 17 ? GLN A 12 VAL A 16 5 ? 5 HELX_P HELX_P2 2 ARG A 24 ? GLY A 44 ? ARG A 23 GLY A 43 1 ? 21 HELX_P HELX_P3 3 GLY A 126 ? GLN A 139 ? GLY A 125 GLN A 138 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A PRO 3 N ? ? A MSE 1 A PRO 2 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale3 covale both ? A LEU 39 C ? ? ? 1_555 A MSE 40 N ? ? A LEU 38 A MSE 39 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? A MSE 40 C ? ? ? 1_555 A ASP 41 N ? ? A MSE 39 A ASP 40 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale5 covale both ? A GLN 110 C ? ? ? 1_555 A MSE 111 N ? ? A GLN 109 A MSE 110 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale6 covale both ? A MSE 111 C ? ? ? 1_555 A LEU 112 N ? ? A MSE 110 A LEU 111 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale7 covale both ? A TYR 148 C ? ? ? 1_555 A MSE 149 N ? ? A TYR 147 A MSE 148 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale8 covale both ? A MSE 149 C ? ? ? 1_555 A GLY 150 N ? ? A MSE 148 A GLY 149 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 6 ? THR A 11 ? ILE A 5 THR A 10 A 2 GLU A 75 ? PHE A 85 ? GLU A 74 PHE A 84 A 3 ARG A 89 ? ARG A 98 ? ARG A 88 ARG A 97 A 4 PHE A 101 ? HIS A 114 ? PHE A 100 HIS A 113 A 5 LEU A 57 ? TYR A 66 ? LEU A 56 TYR A 65 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 10 ? N THR A 9 O VAL A 76 ? O VAL A 75 A 2 3 N GLY A 84 ? N GLY A 83 O HIS A 91 ? O HIS A 90 A 3 4 N LEU A 96 ? N LEU A 95 O ALA A 106 ? O ALA A 105 A 4 5 O LEU A 113 ? O LEU A 112 N PHE A 58 ? N PHE A 57 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id GOL _struct_site.pdbx_auth_seq_id 157 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'BINDING SITE FOR RESIDUE GOL A 157' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 SER A 33 ? SER A 32 . ? 1_555 ? 2 AC1 9 THR A 36 ? THR A 35 . ? 1_555 ? 3 AC1 9 ASP A 37 ? ASP A 36 . ? 1_555 ? 4 AC1 9 GLY A 54 ? GLY A 53 . ? 1_555 ? 5 AC1 9 LEU A 57 ? LEU A 56 . ? 1_555 ? 6 AC1 9 THR A 59 ? THR A 58 . ? 1_555 ? 7 AC1 9 LEU A 112 ? LEU A 111 . ? 1_555 ? 8 AC1 9 HOH C . ? HOH A 195 . ? 2_755 ? 9 AC1 9 HOH C . ? HOH A 198 . ? 2_755 ? # _atom_sites.entry_id 2HLJ _atom_sites.fract_transf_matrix[1][1] 0.01858 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01359 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.02516 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 PRO 3 2 2 PRO PRO A . n A 1 4 ALA 4 3 3 ALA ALA A . n A 1 5 LEU 5 4 4 LEU LEU A . n A 1 6 ILE 6 5 5 ILE ILE A . n A 1 7 THR 7 6 6 THR THR A . n A 1 8 TYR 8 7 7 TYR TYR A . n A 1 9 ARG 9 8 8 ARG ARG A . n A 1 10 THR 10 9 9 THR THR A . n A 1 11 THR 11 10 10 THR THR A . n A 1 12 VAL 12 11 11 VAL VAL A . n A 1 13 GLN 13 12 12 GLN GLN A . n A 1 14 GLU 14 13 13 GLU GLU A . n A 1 15 ASP 15 14 14 ASP ASP A . n A 1 16 TRP 16 15 15 TRP TRP A . n A 1 17 VAL 17 16 16 VAL VAL A . n A 1 18 ASP 18 17 17 ASP ASP A . n A 1 19 TYR 19 18 18 TYR TYR A . n A 1 20 ASN 20 19 19 ASN ASN A . n A 1 21 GLY 21 20 20 GLY GLY A . n A 1 22 HIS 22 21 21 HIS HIS A . n A 1 23 LEU 23 22 22 LEU LEU A . n A 1 24 ARG 24 23 23 ARG ARG A . n A 1 25 ASP 25 24 24 ASP ASP A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 PHE 27 26 26 PHE PHE A . n A 1 28 TYR 28 27 27 TYR TYR A . n A 1 29 LEU 29 28 28 LEU LEU A . n A 1 30 LEU 30 29 29 LEU LEU A . n A 1 31 ILE 31 30 30 ILE ILE A . n A 1 32 PHE 32 31 31 PHE PHE A . n A 1 33 SER 33 32 32 SER SER A . n A 1 34 TYR 34 33 33 TYR TYR A . n A 1 35 ALA 35 34 34 ALA ALA A . n A 1 36 THR 36 35 35 THR THR A . n A 1 37 ASP 37 36 36 ASP ASP A . n A 1 38 ALA 38 37 37 ALA ALA A . n A 1 39 LEU 39 38 38 LEU LEU A . n A 1 40 MSE 40 39 39 MSE MSE A . n A 1 41 ASP 41 40 40 ASP ASP A . n A 1 42 ARG 42 41 41 ARG ARG A . n A 1 43 ILE 43 42 42 ILE ILE A . n A 1 44 GLY 44 43 43 GLY GLY A . n A 1 45 LEU 45 44 44 LEU LEU A . n A 1 46 ASP 46 45 45 ASP ASP A . n A 1 47 ALA 47 46 46 ALA ALA A . n A 1 48 ASP 48 47 47 ASP ASP A . n A 1 49 SER 49 48 48 SER SER A . n A 1 50 ARG 50 49 49 ARG ARG A . n A 1 51 GLY 51 50 50 GLY GLY A . n A 1 52 GLN 52 51 51 GLN GLN A . n A 1 53 SER 53 52 52 SER SER A . n A 1 54 GLY 54 53 53 GLY GLY A . n A 1 55 ASN 55 54 54 ASN ASN A . n A 1 56 SER 56 55 55 SER SER A . n A 1 57 LEU 57 56 56 LEU LEU A . n A 1 58 PHE 58 57 57 PHE PHE A . n A 1 59 THR 59 58 58 THR THR A . n A 1 60 LEU 60 59 59 LEU LEU A . n A 1 61 GLU 61 60 60 GLU GLU A . n A 1 62 ALA 62 61 61 ALA ALA A . n A 1 63 HIS 63 62 62 HIS HIS A . n A 1 64 ILE 64 63 63 ILE ILE A . n A 1 65 ASN 65 64 64 ASN ASN A . n A 1 66 TYR 66 65 65 TYR TYR A . n A 1 67 LEU 67 66 66 LEU LEU A . n A 1 68 HIS 68 67 67 HIS HIS A . n A 1 69 GLU 69 68 68 GLU GLU A . n A 1 70 VAL 70 69 69 VAL VAL A . n A 1 71 LYS 71 70 70 LYS LYS A . n A 1 72 LEU 72 71 71 LEU LEU A . n A 1 73 GLY 73 72 72 GLY GLY A . n A 1 74 THR 74 73 73 THR THR A . n A 1 75 GLU 75 74 74 GLU GLU A . n A 1 76 VAL 76 75 75 VAL VAL A . n A 1 77 TRP 77 76 76 TRP TRP A . n A 1 78 VAL 78 77 77 VAL VAL A . n A 1 79 GLN 79 78 78 GLN GLN A . n A 1 80 THR 80 79 79 THR THR A . n A 1 81 GLN 81 80 80 GLN GLN A . n A 1 82 ILE 82 81 81 ILE ILE A . n A 1 83 LEU 83 82 82 LEU LEU A . n A 1 84 GLY 84 83 83 GLY GLY A . n A 1 85 PHE 85 84 84 PHE PHE A . n A 1 86 ASP 86 85 85 ASP ASP A . n A 1 87 ARG 87 86 86 ARG ARG A . n A 1 88 LYS 88 87 87 LYS LYS A . n A 1 89 ARG 89 88 88 ARG ARG A . n A 1 90 LEU 90 89 89 LEU LEU A . n A 1 91 HIS 91 90 90 HIS HIS A . n A 1 92 VAL 92 91 91 VAL VAL A . n A 1 93 TYR 93 92 92 TYR TYR A . n A 1 94 HIS 94 93 93 HIS HIS A . n A 1 95 SER 95 94 94 SER SER A . n A 1 96 LEU 96 95 95 LEU LEU A . n A 1 97 HIS 97 96 96 HIS HIS A . n A 1 98 ARG 98 97 97 ARG ARG A . n A 1 99 ALA 99 98 98 ALA ALA A . n A 1 100 GLY 100 99 99 GLY GLY A . n A 1 101 PHE 101 100 100 PHE PHE A . n A 1 102 ASP 102 101 101 ASP ASP A . n A 1 103 GLU 103 102 102 GLU GLU A . n A 1 104 VAL 104 103 103 VAL VAL A . n A 1 105 LEU 105 104 104 LEU LEU A . n A 1 106 ALA 106 105 105 ALA ALA A . n A 1 107 ALA 107 106 106 ALA ALA A . n A 1 108 SER 108 107 107 SER SER A . n A 1 109 GLU 109 108 108 GLU GLU A . n A 1 110 GLN 110 109 109 GLN GLN A . n A 1 111 MSE 111 110 110 MSE MSE A . n A 1 112 LEU 112 111 111 LEU LEU A . n A 1 113 LEU 113 112 112 LEU LEU A . n A 1 114 HIS 114 113 113 HIS HIS A . n A 1 115 VAL 115 114 114 VAL VAL A . n A 1 116 ASP 116 115 115 ASP ASP A . n A 1 117 LEU 117 116 116 LEU LEU A . n A 1 118 ALA 118 117 ? ? ? A . n A 1 119 GLY 119 118 ? ? ? A . n A 1 120 PRO 120 119 ? ? ? A . n A 1 121 GLN 121 120 120 GLN GLN A . n A 1 122 SER 122 121 121 SER SER A . n A 1 123 ALA 123 122 122 ALA ALA A . n A 1 124 PRO 124 123 123 PRO PRO A . n A 1 125 PHE 125 124 124 PHE PHE A . n A 1 126 GLY 126 125 125 GLY GLY A . n A 1 127 HIS 127 126 126 HIS HIS A . n A 1 128 THR 128 127 127 THR THR A . n A 1 129 THR 129 128 128 THR THR A . n A 1 130 VAL 130 129 129 VAL VAL A . n A 1 131 CYS 131 130 130 CYS CYS A . n A 1 132 ARG 132 131 131 ARG ARG A . n A 1 133 LEU 133 132 132 LEU LEU A . n A 1 134 ASN 134 133 133 ASN ASN A . n A 1 135 HIS 135 134 134 HIS HIS A . n A 1 136 LEU 136 135 135 LEU LEU A . n A 1 137 VAL 137 136 136 VAL VAL A . n A 1 138 GLU 138 137 137 GLU GLU A . n A 1 139 GLN 139 138 138 GLN GLN A . n A 1 140 GLN 140 139 139 GLN GLN A . n A 1 141 GLU 141 140 140 GLU GLU A . n A 1 142 GLY 142 141 141 GLY GLY A . n A 1 143 ALA 143 142 142 ALA ALA A . n A 1 144 GLN 144 143 143 GLN GLN A . n A 1 145 ALA 145 144 144 ALA ALA A . n A 1 146 PRO 146 145 145 PRO PRO A . n A 1 147 GLN 147 146 146 GLN GLN A . n A 1 148 TYR 148 147 147 TYR TYR A . n A 1 149 MSE 149 148 148 MSE MSE A . n A 1 150 GLY 150 149 149 GLY GLY A . n A 1 151 ARG 151 150 150 ARG ARG A . n A 1 152 THR 152 151 151 THR THR A . n A 1 153 ILE 153 152 152 ILE ILE A . n A 1 154 LYS 154 153 153 LYS LYS A . n A 1 155 LEU 155 154 154 LEU LEU A . n A 1 156 PRO 156 155 155 PRO PRO A . n A 1 157 ALA 157 156 156 ALA ALA A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 157 1 GOL GOL A . C 3 HOH 1 158 2 HOH HOH A . C 3 HOH 2 159 3 HOH HOH A . C 3 HOH 3 160 4 HOH HOH A . C 3 HOH 4 161 5 HOH HOH A . C 3 HOH 5 162 6 HOH HOH A . C 3 HOH 6 163 7 HOH HOH A . C 3 HOH 7 164 8 HOH HOH A . C 3 HOH 8 165 9 HOH HOH A . C 3 HOH 9 166 10 HOH HOH A . C 3 HOH 10 167 11 HOH HOH A . C 3 HOH 11 168 12 HOH HOH A . C 3 HOH 12 169 13 HOH HOH A . C 3 HOH 13 170 14 HOH HOH A . C 3 HOH 14 171 15 HOH HOH A . C 3 HOH 15 172 16 HOH HOH A . C 3 HOH 16 173 17 HOH HOH A . C 3 HOH 17 174 18 HOH HOH A . C 3 HOH 18 175 19 HOH HOH A . C 3 HOH 19 176 20 HOH HOH A . C 3 HOH 20 177 21 HOH HOH A . C 3 HOH 21 178 22 HOH HOH A . C 3 HOH 22 179 23 HOH HOH A . C 3 HOH 23 180 24 HOH HOH A . C 3 HOH 24 181 25 HOH HOH A . C 3 HOH 25 182 26 HOH HOH A . C 3 HOH 26 183 27 HOH HOH A . C 3 HOH 27 184 28 HOH HOH A . C 3 HOH 28 185 29 HOH HOH A . C 3 HOH 29 186 30 HOH HOH A . C 3 HOH 30 187 31 HOH HOH A . C 3 HOH 31 188 32 HOH HOH A . C 3 HOH 32 189 33 HOH HOH A . C 3 HOH 33 190 34 HOH HOH A . C 3 HOH 34 191 35 HOH HOH A . C 3 HOH 35 192 36 HOH HOH A . C 3 HOH 36 193 37 HOH HOH A . C 3 HOH 37 194 38 HOH HOH A . C 3 HOH 38 195 39 HOH HOH A . C 3 HOH 39 196 40 HOH HOH A . C 3 HOH 40 197 41 HOH HOH A . C 3 HOH 41 198 42 HOH HOH A . C 3 HOH 42 199 43 HOH HOH A . C 3 HOH 43 200 44 HOH HOH A . C 3 HOH 44 201 45 HOH HOH A . C 3 HOH 45 202 46 HOH HOH A . C 3 HOH 46 203 47 HOH HOH A . C 3 HOH 47 204 48 HOH HOH A . C 3 HOH 48 205 49 HOH HOH A . C 3 HOH 49 206 50 HOH HOH A . C 3 HOH 50 207 51 HOH HOH A . C 3 HOH 51 208 52 HOH HOH A . C 3 HOH 52 209 53 HOH HOH A . C 3 HOH 53 210 54 HOH HOH A . C 3 HOH 54 211 55 HOH HOH A . C 3 HOH 55 212 56 HOH HOH A . C 3 HOH 56 213 57 HOH HOH A . C 3 HOH 57 214 58 HOH HOH A . C 3 HOH 58 215 59 HOH HOH A . C 3 HOH 59 216 60 HOH HOH A . C 3 HOH 60 217 61 HOH HOH A . C 3 HOH 61 218 62 HOH HOH A . C 3 HOH 62 219 63 HOH HOH A . C 3 HOH 63 220 64 HOH HOH A . C 3 HOH 64 221 65 HOH HOH A . C 3 HOH 65 222 66 HOH HOH A . C 3 HOH 66 223 67 HOH HOH A . C 3 HOH 67 224 68 HOH HOH A . C 3 HOH 68 225 69 HOH HOH A . C 3 HOH 69 226 70 HOH HOH A . C 3 HOH 70 227 71 HOH HOH A . C 3 HOH 71 228 72 HOH HOH A . C 3 HOH 72 229 73 HOH HOH A . C 3 HOH 73 230 74 HOH HOH A . C 3 HOH 74 231 75 HOH HOH A . C 3 HOH 75 232 76 HOH HOH A . C 3 HOH 76 233 77 HOH HOH A . C 3 HOH 77 234 78 HOH HOH A . C 3 HOH 78 235 79 HOH HOH A . C 3 HOH 79 236 80 HOH HOH A . C 3 HOH 80 237 81 HOH HOH A . C 3 HOH 81 238 82 HOH HOH A . C 3 HOH 82 239 83 HOH HOH A . C 3 HOH 83 240 84 HOH HOH A . C 3 HOH 84 241 85 HOH HOH A . C 3 HOH 85 242 86 HOH HOH A . C 3 HOH 86 243 87 HOH HOH A . C 3 HOH 87 244 88 HOH HOH A . C 3 HOH 88 245 89 HOH HOH A . C 3 HOH 89 246 90 HOH HOH A . C 3 HOH 90 247 91 HOH HOH A . C 3 HOH 91 248 92 HOH HOH A . C 3 HOH 92 249 93 HOH HOH A . C 3 HOH 93 250 94 HOH HOH A . C 3 HOH 94 251 95 HOH HOH A . C 3 HOH 95 252 96 HOH HOH A . C 3 HOH 96 253 97 HOH HOH A . C 3 HOH 97 254 98 HOH HOH A . C 3 HOH 98 255 99 HOH HOH A . C 3 HOH 99 256 100 HOH HOH A . C 3 HOH 100 257 101 HOH HOH A . C 3 HOH 101 258 102 HOH HOH A . C 3 HOH 102 259 103 HOH HOH A . C 3 HOH 103 260 104 HOH HOH A . C 3 HOH 104 261 105 HOH HOH A . C 3 HOH 105 262 106 HOH HOH A . C 3 HOH 106 263 107 HOH HOH A . C 3 HOH 107 264 108 HOH HOH A . C 3 HOH 108 265 109 HOH HOH A . C 3 HOH 109 266 110 HOH HOH A . C 3 HOH 110 267 111 HOH HOH A . C 3 HOH 111 268 112 HOH HOH A . C 3 HOH 112 269 113 HOH HOH A . C 3 HOH 113 270 114 HOH HOH A . C 3 HOH 114 271 115 HOH HOH A . C 3 HOH 115 272 116 HOH HOH A . C 3 HOH 116 273 117 HOH HOH A . C 3 HOH 117 274 118 HOH HOH A . C 3 HOH 118 275 119 HOH HOH A . C 3 HOH 119 276 120 HOH HOH A . C 3 HOH 120 277 121 HOH HOH A . C 3 HOH 121 278 122 HOH HOH A . C 3 HOH 122 279 123 HOH HOH A . C 3 HOH 123 280 124 HOH HOH A . C 3 HOH 124 281 125 HOH HOH A . C 3 HOH 125 282 126 HOH HOH A . C 3 HOH 126 283 127 HOH HOH A . C 3 HOH 127 284 128 HOH HOH A . C 3 HOH 128 285 129 HOH HOH A . C 3 HOH 129 286 130 HOH HOH A . C 3 HOH 130 287 131 HOH HOH A . C 3 HOH 131 288 132 HOH HOH A . C 3 HOH 132 289 133 HOH HOH A . C 3 HOH 133 290 134 HOH HOH A . C 3 HOH 134 291 135 HOH HOH A . C 3 HOH 135 292 136 HOH HOH A . C 3 HOH 136 293 137 HOH HOH A . C 3 HOH 137 294 138 HOH HOH A . C 3 HOH 138 295 139 HOH HOH A . C 3 HOH 139 296 140 HOH HOH A . C 3 HOH 140 297 141 HOH HOH A . C 3 HOH 141 298 142 HOH HOH A . C 3 HOH 142 299 143 HOH HOH A . C 3 HOH 143 300 144 HOH HOH A . C 3 HOH 144 301 145 HOH HOH A . C 3 HOH 145 302 146 HOH HOH A . C 3 HOH 146 303 147 HOH HOH A . C 3 HOH 147 304 148 HOH HOH A . C 3 HOH 148 305 149 HOH HOH A . C 3 HOH 149 306 150 HOH HOH A . C 3 HOH 150 307 151 HOH HOH A . C 3 HOH 151 308 152 HOH HOH A . C 3 HOH 152 309 153 HOH HOH A . C 3 HOH 153 310 154 HOH HOH A . C 3 HOH 154 311 155 HOH HOH A . C 3 HOH 155 312 156 HOH HOH A . C 3 HOH 156 313 157 HOH HOH A . C 3 HOH 157 314 158 HOH HOH A . C 3 HOH 158 315 159 HOH HOH A . C 3 HOH 159 316 160 HOH HOH A . C 3 HOH 160 317 161 HOH HOH A . C 3 HOH 161 318 162 HOH HOH A . C 3 HOH 162 319 163 HOH HOH A . C 3 HOH 163 320 164 HOH HOH A . C 3 HOH 164 321 165 HOH HOH A . C 3 HOH 165 322 166 HOH HOH A . C 3 HOH 166 323 167 HOH HOH A . C 3 HOH 167 324 168 HOH HOH A . C 3 HOH 168 325 169 HOH HOH A . C 3 HOH 169 326 170 HOH HOH A . C 3 HOH 170 327 171 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 40 A MSE 39 ? MET SELENOMETHIONINE 3 A MSE 111 A MSE 110 ? MET SELENOMETHIONINE 4 A MSE 149 A MSE 148 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4470 ? 1 MORE -17 ? 1 'SSA (A^2)' 15080 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_755 -x+2,-y,z -1.0000000000 0.0000000000 0.0000000000 107.6180000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-15 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Source and taxonomy' 5 3 'Structure model' 'Version format compliance' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_struct_ref_seq_dif.details' 7 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 46.5970 _pdbx_refine_tls.origin_y 7.8970 _pdbx_refine_tls.origin_z 7.0620 _pdbx_refine_tls.T[1][1] -0.0614 _pdbx_refine_tls.T[2][2] -0.0376 _pdbx_refine_tls.T[3][3] -0.0290 _pdbx_refine_tls.T[1][2] 0.0123 _pdbx_refine_tls.T[1][3] 0.0008 _pdbx_refine_tls.T[2][3] -0.0010 _pdbx_refine_tls.L[1][1] 1.0167 _pdbx_refine_tls.L[2][2] 1.6542 _pdbx_refine_tls.L[3][3] 0.6490 _pdbx_refine_tls.L[1][2] -0.2942 _pdbx_refine_tls.L[1][3] 0.1113 _pdbx_refine_tls.L[2][3] 0.0984 _pdbx_refine_tls.S[1][1] -0.0580 _pdbx_refine_tls.S[2][2] 0.0462 _pdbx_refine_tls.S[3][3] 0.0119 _pdbx_refine_tls.S[1][2] -0.0800 _pdbx_refine_tls.S[1][3] 0.0868 _pdbx_refine_tls.S[2][3] 0.0254 _pdbx_refine_tls.S[2][1] 0.1033 _pdbx_refine_tls.S[3][1] 0.0015 _pdbx_refine_tls.S[3][2] 0.0140 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 1 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 157 _pdbx_refine_tls_group.selection ALL _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 156 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 1 REFMAC 5.2.0005 ? ? 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 2 SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 5 CCP4 '(SCALA)' ? ? ? ? 'data scaling' ? ? ? 6 SOLVE . ? ? ? ? phasing ? ? ? 7 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 85 ? ? -125.89 -152.47 2 1 ASP A 101 ? ? -104.54 47.15 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 86 ? NE ? A ARG 87 NE 2 1 Y 1 A ARG 86 ? CZ ? A ARG 87 CZ 3 1 Y 1 A ARG 86 ? NH1 ? A ARG 87 NH1 4 1 Y 1 A ARG 86 ? NH2 ? A ARG 87 NH2 5 1 Y 1 A GLN 120 ? CD ? A GLN 121 CD 6 1 Y 1 A GLN 120 ? OE1 ? A GLN 121 OE1 7 1 Y 1 A GLN 120 ? NE2 ? A GLN 121 NE2 8 1 Y 1 A LYS 153 ? CD ? A LYS 154 CD 9 1 Y 1 A LYS 153 ? CE ? A LYS 154 CE 10 1 Y 1 A LYS 153 ? NZ ? A LYS 154 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 117 ? A ALA 118 2 1 Y 1 A GLY 118 ? A GLY 119 3 1 Y 1 A PRO 119 ? A PRO 120 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH #