HEADER TRANSFERASE 11-JUL-06 2HMA TITLE THE CRYSTAL STRUCTURE OF TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)- TITLE 2 METHYLTRANSFERASE TRMU FROM STREPTOCOCCUS PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)- COMPND 3 METHYLTRANSFERASE; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)- COMPND 6 METHYLTRANSFERASE; COMPND 7 EC: 2.1.1.61; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 GENE: TRMU; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS ALPHA-BETA, BETA BARREL, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,M.ZHOU,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 13-JUL-11 2HMA 1 VERSN REVDAT 2 24-FEB-09 2HMA 1 VERSN REVDAT 1 08-AUG-06 2HMA 0 JRNL AUTH Y.KIM,M.ZHOU,J.ABDULLAH,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF TRNA JRNL TITL 2 (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE TRMU JRNL TITL 3 FROM STREPTOCOCCUS PNEUMONIAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0000 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 27925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3118 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1933 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 216 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2867 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.95000 REMARK 3 B22 (A**2) : 2.95000 REMARK 3 B33 (A**2) : -4.43000 REMARK 3 B12 (A**2) : 1.48000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.226 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.624 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3172 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4312 ; 1.498 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 403 ; 6.232 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;36.887 ;24.259 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 542 ;19.196 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;22.018 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 445 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2521 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1460 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 237 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.204 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.123 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1965 ; 0.852 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3114 ; 1.477 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1364 ; 2.082 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1198 ; 3.145 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 373 REMARK 3 ORIGIN FOR THE GROUP (A): 29.5974 24.2170 3.8805 REMARK 3 T TENSOR REMARK 3 T11: -0.2335 T22: -0.1673 REMARK 3 T33: -0.2105 T12: 0.0801 REMARK 3 T13: 0.0080 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: 1.1995 L22: 1.1963 REMARK 3 L33: 3.4789 L12: -0.4840 REMARK 3 L13: -0.4768 L23: 1.0953 REMARK 3 S TENSOR REMARK 3 S11: 0.0622 S12: -0.3205 S13: -0.0289 REMARK 3 S21: -0.1107 S22: -0.0332 S23: -0.1110 REMARK 3 S31: 0.2899 S32: 0.3351 S33: -0.0290 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 375 A 375 REMARK 3 ORIGIN FOR THE GROUP (A): 29.9312 32.3283 10.8882 REMARK 3 T TENSOR REMARK 3 T11: -0.0020 T22: 0.0158 REMARK 3 T33: 0.0079 T12: -0.0300 REMARK 3 T13: -0.0147 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 31.5453 L22: 10.0195 REMARK 3 L33: 15.4190 L12: -4.8404 REMARK 3 L13: -2.8578 L23: 2.0896 REMARK 3 S TENSOR REMARK 3 S11: 0.1633 S12: 0.0400 S13: -1.3360 REMARK 3 S21: -0.8982 S22: -0.2268 S23: 0.9952 REMARK 3 S31: 0.9221 S32: -0.1115 S33: 0.0635 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HMA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-06. REMARK 100 THE RCSB ID CODE IS RCSB038510. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97912 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31670 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.410 REMARK 200 RESOLUTION RANGE LOW (A) : 44.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.57800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.780 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXE, SOLVE/RESOLVE, ARP/WARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS PH=8.5, AND 3.5M NAFORMATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.67867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.33933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.33933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 104.67867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 GLU A 46 REMARK 465 ASN A 47 REMARK 465 GLY A 48 REMARK 465 VAL A 49 REMARK 465 GLN A 252 REMARK 465 HIS A 253 REMARK 465 GLY A 254 REMARK 465 GLY A 255 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 ILE A 373 O HOH A 597 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 244 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 VAL A 346 CB - CA - C ANGL. DEV. = -13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 110 -76.83 -130.20 REMARK 500 HIS A 280 129.55 -34.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ILE A 373 22.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 535 DISTANCE = 5.88 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 374 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 14 OG REMARK 620 2 SER A 19 OG 59.5 REMARK 620 3 HOH A 592 O 58.9 113.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 374 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 375 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC80192 RELATED DB: TARGETDB DBREF 2HMA A 1 373 UNP Q97T38 TRMU_STRPN 1 373 SEQADV 2HMA SER A -2 UNP Q97T38 CLONING ARTIFACT SEQADV 2HMA ASN A -1 UNP Q97T38 CLONING ARTIFACT SEQADV 2HMA ALA A 0 UNP Q97T38 CLONING ARTIFACT SEQADV 2HMA MSE A 1 UNP Q97T38 MET 1 MODIFIED RESIDUE SEQADV 2HMA MSE A 13 UNP Q97T38 MET 13 MODIFIED RESIDUE SEQADV 2HMA MSE A 38 UNP Q97T38 MET 38 MODIFIED RESIDUE SEQADV 2HMA MSE A 102 UNP Q97T38 MET 102 MODIFIED RESIDUE SEQADV 2HMA MSE A 142 UNP Q97T38 MET 142 MODIFIED RESIDUE SEQADV 2HMA MSE A 168 UNP Q97T38 MET 168 MODIFIED RESIDUE SEQADV 2HMA MSE A 222 UNP Q97T38 MET 222 MODIFIED RESIDUE SEQADV 2HMA MSE A 223 UNP Q97T38 MET 223 MODIFIED RESIDUE SEQADV 2HMA MSE A 230 UNP Q97T38 MET 230 MODIFIED RESIDUE SEQADV 2HMA MSE A 237 UNP Q97T38 MET 237 MODIFIED RESIDUE SEQADV 2HMA MSE A 284 UNP Q97T38 MET 284 MODIFIED RESIDUE SEQADV 2HMA MSE A 299 UNP Q97T38 MET 299 MODIFIED RESIDUE SEQRES 1 A 376 SER ASN ALA MSE SER ASP ASN SER LYS THR ARG VAL VAL SEQRES 2 A 376 VAL GLY MSE SER GLY GLY VAL ASP SER SER VAL THR ALA SEQRES 3 A 376 LEU LEU LEU LYS GLU GLN GLY TYR ASP VAL ILE GLY ILE SEQRES 4 A 376 PHE MSE LYS ASN TRP ASP ASP THR ASP GLU ASN GLY VAL SEQRES 5 A 376 CYS THR ALA THR GLU ASP TYR LYS ASP VAL VAL ALA VAL SEQRES 6 A 376 ALA ASP GLN ILE GLY ILE PRO TYR TYR SER VAL ASN PHE SEQRES 7 A 376 GLU LYS GLU TYR TRP ASP ARG VAL PHE GLU TYR PHE LEU SEQRES 8 A 376 ALA GLU TYR ARG ALA GLY ARG THR PRO ASN PRO ASP VAL SEQRES 9 A 376 MSE CYS ASN LYS GLU ILE LYS PHE LYS ALA PHE LEU ASP SEQRES 10 A 376 TYR ALA ILE THR LEU GLY ALA ASP TYR VAL ALA THR GLY SEQRES 11 A 376 HIS TYR ALA ARG VAL ALA ARG ASP GLU ASP GLY THR VAL SEQRES 12 A 376 HIS MSE LEU ARG GLY VAL ASP ASN GLY LYS ASP GLN THR SEQRES 13 A 376 TYR PHE LEU SER GLN LEU SER GLN GLU GLN LEU GLN LYS SEQRES 14 A 376 THR MSE PHE PRO LEU GLY HIS LEU GLU LYS PRO GLU VAL SEQRES 15 A 376 ARG ARG LEU ALA GLU GLU ALA GLY LEU SER THR ALA LYS SEQRES 16 A 376 LYS LYS ASP SER THR GLY ILE CYS PHE ILE GLY GLU LYS SEQRES 17 A 376 ASN PHE LYS ASN PHE LEU SER ASN TYR LEU PRO ALA GLN SEQRES 18 A 376 PRO GLY ARG MSE MSE THR VAL ASP GLY ARG ASP MSE GLY SEQRES 19 A 376 GLU HIS ALA GLY LEU MSE TYR TYR THR ILE GLY GLN ARG SEQRES 20 A 376 GLY GLY LEU GLY ILE GLY GLY GLN HIS GLY GLY ASP ASN SEQRES 21 A 376 ALA PRO TRP PHE VAL VAL GLY LYS ASP LEU SER LYS ASN SEQRES 22 A 376 ILE LEU TYR VAL GLY GLN GLY PHE TYR HIS ASP SER LEU SEQRES 23 A 376 MSE SER THR SER LEU GLU ALA SER GLN VAL HIS PHE THR SEQRES 24 A 376 ARG GLU MSE PRO GLU GLU PHE THR LEU GLU CYS THR ALA SEQRES 25 A 376 LYS PHE ARG TYR ARG GLN PRO ASP SER LYS VAL THR VAL SEQRES 26 A 376 HIS VAL LYS GLY GLU LYS THR GLU VAL ILE PHE ALA GLU SEQRES 27 A 376 PRO GLN ARG ALA ILE THR PRO GLY GLN ALA VAL VAL PHE SEQRES 28 A 376 TYR ASP GLY GLU GLU CYS LEU GLY GLY GLY LEU ILE ASP SEQRES 29 A 376 ASN ALA TYR ARG ASP GLY GLN VAL CYS GLN TYR ILE MODRES 2HMA MSE A 13 MET SELENOMETHIONINE MODRES 2HMA MSE A 38 MET SELENOMETHIONINE MODRES 2HMA MSE A 102 MET SELENOMETHIONINE MODRES 2HMA MSE A 142 MET SELENOMETHIONINE MODRES 2HMA MSE A 168 MET SELENOMETHIONINE MODRES 2HMA MSE A 222 MET SELENOMETHIONINE MODRES 2HMA MSE A 223 MET SELENOMETHIONINE MODRES 2HMA MSE A 230 MET SELENOMETHIONINE MODRES 2HMA MSE A 237 MET SELENOMETHIONINE MODRES 2HMA MSE A 284 MET SELENOMETHIONINE MODRES 2HMA MSE A 299 MET SELENOMETHIONINE HET MSE A 13 8 HET MSE A 38 8 HET MSE A 102 8 HET MSE A 142 8 HET MSE A 168 8 HET MSE A 222 8 HET MSE A 223 8 HET MSE A 230 8 HET MSE A 237 16 HET MSE A 284 8 HET MSE A 299 8 HET MG A 374 1 HET SAM A 375 27 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 MG MG 2+ FORMUL 3 SAM C15 H22 N6 O5 S FORMUL 4 HOH *225(H2 O) HELIX 1 1 ASP A 3 LYS A 6 5 4 HELIX 2 2 GLY A 16 GLN A 29 1 14 HELIX 3 3 CYS A 50 GLY A 67 1 18 HELIX 4 4 PHE A 75 VAL A 83 1 9 HELIX 5 5 VAL A 83 ALA A 93 1 11 HELIX 6 6 ASN A 98 ILE A 107 1 10 HELIX 7 7 LYS A 110 THR A 118 1 9 HELIX 8 8 GLN A 152 SER A 157 5 6 HELIX 9 9 SER A 160 GLN A 165 1 6 HELIX 10 10 GLU A 175 ALA A 186 1 12 HELIX 11 11 ASN A 206 ASN A 213 1 8 HELIX 12 12 GLY A 235 TYR A 239 5 5 HELIX 13 13 LEU A 267 ASN A 270 5 4 HELIX 14 14 HIS A 280 SER A 282 5 3 SHEET 1 A 5 TYR A 70 ASN A 74 0 SHEET 2 A 5 ASP A 32 LYS A 39 1 N PHE A 37 O VAL A 73 SHEET 3 A 5 ARG A 8 GLY A 12 1 N VAL A 11 O ILE A 36 SHEET 4 A 5 TYR A 123 ALA A 125 1 O ALA A 125 N GLY A 12 SHEET 5 A 5 THR A 167 MSE A 168 1 O MSE A 168 N VAL A 124 SHEET 1 B 9 ALA A 130 ARG A 134 0 SHEET 2 B 9 VAL A 140 ARG A 144 -1 O LEU A 143 N ARG A 131 SHEET 3 B 9 GLU A 353 TYR A 364 -1 O CYS A 354 N MSE A 142 SHEET 4 B 9 ALA A 345 ASP A 350 -1 N ASP A 350 O GLU A 353 SHEET 5 B 9 PHE A 303 LYS A 310 -1 N THR A 308 O TYR A 349 SHEET 6 B 9 SER A 318 VAL A 324 -1 O VAL A 322 N LEU A 305 SHEET 7 B 9 THR A 329 ARG A 338 -1 O ILE A 332 N THR A 321 SHEET 8 B 9 MSE A 284 PHE A 295 -1 N LEU A 288 O VAL A 331 SHEET 9 B 9 GLU A 353 TYR A 364 -1 O LEU A 359 N SER A 291 SHEET 1 C 4 ASP A 229 HIS A 233 0 SHEET 2 C 4 GLY A 220 THR A 224 -1 N MSE A 222 O MSE A 230 SHEET 3 C 4 ILE A 271 GLN A 276 1 O VAL A 274 N MSE A 223 SHEET 4 C 4 TRP A 260 ASP A 266 -1 N PHE A 261 O GLY A 275 LINK C GLY A 12 N MSE A 13 1555 1555 1.32 LINK C MSE A 13 N SER A 14 1555 1555 1.33 LINK C PHE A 37 N MSE A 38 1555 1555 1.33 LINK C MSE A 38 N LYS A 39 1555 1555 1.32 LINK C VAL A 101 N MSE A 102 1555 1555 1.33 LINK C MSE A 102 N CYS A 103 1555 1555 1.33 LINK C AHIS A 141 N MSE A 142 1555 1555 1.34 LINK C BHIS A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N LEU A 143 1555 1555 1.32 LINK C THR A 167 N MSE A 168 1555 1555 1.34 LINK C MSE A 168 N PHE A 169 1555 1555 1.34 LINK C ARG A 221 N MSE A 222 1555 1555 1.31 LINK C MSE A 222 N MSE A 223 1555 1555 1.33 LINK C MSE A 223 N THR A 224 1555 1555 1.32 LINK C ASP A 229 N MSE A 230 1555 1555 1.32 LINK C MSE A 230 N GLY A 231 1555 1555 1.33 LINK C LEU A 236 N AMSE A 237 1555 1555 1.33 LINK C LEU A 236 N BMSE A 237 1555 1555 1.33 LINK C AMSE A 237 N TYR A 238 1555 1555 1.33 LINK C BMSE A 237 N TYR A 238 1555 1555 1.33 LINK C LEU A 283 N MSE A 284 1555 1555 1.33 LINK C MSE A 284 N SER A 285 1555 1555 1.33 LINK C GLU A 298 N MSE A 299 1555 1555 1.34 LINK C MSE A 299 N PRO A 300 1555 1555 1.35 LINK MG MG A 374 OG SER A 14 1555 1555 2.83 LINK MG MG A 374 OG SER A 19 1555 1555 3.12 LINK MG MG A 374 O HOH A 592 1555 1555 2.78 SITE 1 AC1 6 SER A 14 GLY A 16 ASP A 18 SER A 19 SITE 2 AC1 6 SAM A 375 HOH A 592 SITE 1 AC2 16 GLY A 12 MSE A 13 SER A 14 SER A 19 SITE 2 AC2 16 ILE A 36 MSE A 38 ASP A 100 ASN A 104 SITE 3 AC2 16 LYS A 108 THR A 126 GLY A 127 HIS A 128 SITE 4 AC2 16 GLN A 152 PHE A 155 MG A 374 HOH A 592 CRYST1 93.319 93.319 157.018 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010716 0.006187 0.000000 0.00000 SCALE2 0.000000 0.012374 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006369 0.00000