data_2HPS # _entry.id 2HPS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2HPS RCSB RCSB038616 WWPDB D_1000038616 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2HPS _pdbx_database_status.recvd_initial_deposition_date 2006-07-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stepanyuk, G.' 1 'Liu, Z.J.' 2 'Vysotski, E.S.' 3 'Lee, J.' 4 'Rose, J.P.' 5 'Wang, B.C.' 6 'Southeast Collaboratory for Structural Genomics (SECSG)' 7 # _citation.id primary _citation.title 'Crystal structure of coelenterazine-binding protein from Renilla muelleri at 1.7 A: why it is not a calcium-regulated photoprotein.' _citation.journal_abbrev PHOTOCHEM.PHOTOBIOL.SCI. _citation.journal_volume 7 _citation.page_first 442 _citation.page_last 447 _citation.year 2008 _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18385886 _citation.pdbx_database_id_DOI 10.1039/b716535h # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Stepanyuk, G.A.' 1 primary 'Liu, Z.J.' 2 primary 'Markova, S.S.' 3 primary 'Frank, L.A.' 4 primary 'Lee, J.' 5 primary 'Vysotski, E.S.' 6 primary 'Wang, B.C.' 7 # _cell.entry_id 2HPS _cell.length_a 55.948 _cell.length_b 55.948 _cell.length_c 292.202 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HPS _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'coelenterazine-binding protein with bound coelenterazine' 21134.025 1 ? ? ? ? 2 non-polymer syn C2-HYDROXY-COELENTERAZINE 439.463 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 4 water nat water 18.015 176 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)PEITESERAYHLRK(MSE)KTR(MSE)QRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQL GLAPGVRISVEEAAVNATDSLLK(MSE)KGEEKA(MSE)AVIQSLI(MSE)YDCIDTDKDGYVSLPEFKAFLQAVGPDLT DDKAITCFNTLDFNKNGQISRDEFLVTVNDFLFGLEETALANAFYGDLVD ; _entity_poly.pdbx_seq_one_letter_code_can ;MPEITESERAYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISVEE AAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEF LVTVNDFLFGLEETALANAFYGDLVD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 PRO n 1 3 GLU n 1 4 ILE n 1 5 THR n 1 6 GLU n 1 7 SER n 1 8 GLU n 1 9 ARG n 1 10 ALA n 1 11 TYR n 1 12 HIS n 1 13 LEU n 1 14 ARG n 1 15 LYS n 1 16 MSE n 1 17 LYS n 1 18 THR n 1 19 ARG n 1 20 MSE n 1 21 GLN n 1 22 ARG n 1 23 VAL n 1 24 ASP n 1 25 VAL n 1 26 THR n 1 27 GLY n 1 28 ASP n 1 29 GLY n 1 30 PHE n 1 31 ILE n 1 32 SER n 1 33 ARG n 1 34 GLU n 1 35 ASP n 1 36 TYR n 1 37 GLU n 1 38 LEU n 1 39 ILE n 1 40 ALA n 1 41 VAL n 1 42 ARG n 1 43 ILE n 1 44 ALA n 1 45 LYS n 1 46 ILE n 1 47 ALA n 1 48 LYS n 1 49 LEU n 1 50 SER n 1 51 ALA n 1 52 GLU n 1 53 LYS n 1 54 ALA n 1 55 GLU n 1 56 GLU n 1 57 THR n 1 58 ARG n 1 59 GLN n 1 60 GLU n 1 61 PHE n 1 62 LEU n 1 63 ARG n 1 64 VAL n 1 65 ALA n 1 66 ASP n 1 67 GLN n 1 68 LEU n 1 69 GLY n 1 70 LEU n 1 71 ALA n 1 72 PRO n 1 73 GLY n 1 74 VAL n 1 75 ARG n 1 76 ILE n 1 77 SER n 1 78 VAL n 1 79 GLU n 1 80 GLU n 1 81 ALA n 1 82 ALA n 1 83 VAL n 1 84 ASN n 1 85 ALA n 1 86 THR n 1 87 ASP n 1 88 SER n 1 89 LEU n 1 90 LEU n 1 91 LYS n 1 92 MSE n 1 93 LYS n 1 94 GLY n 1 95 GLU n 1 96 GLU n 1 97 LYS n 1 98 ALA n 1 99 MSE n 1 100 ALA n 1 101 VAL n 1 102 ILE n 1 103 GLN n 1 104 SER n 1 105 LEU n 1 106 ILE n 1 107 MSE n 1 108 TYR n 1 109 ASP n 1 110 CYS n 1 111 ILE n 1 112 ASP n 1 113 THR n 1 114 ASP n 1 115 LYS n 1 116 ASP n 1 117 GLY n 1 118 TYR n 1 119 VAL n 1 120 SER n 1 121 LEU n 1 122 PRO n 1 123 GLU n 1 124 PHE n 1 125 LYS n 1 126 ALA n 1 127 PHE n 1 128 LEU n 1 129 GLN n 1 130 ALA n 1 131 VAL n 1 132 GLY n 1 133 PRO n 1 134 ASP n 1 135 LEU n 1 136 THR n 1 137 ASP n 1 138 ASP n 1 139 LYS n 1 140 ALA n 1 141 ILE n 1 142 THR n 1 143 CYS n 1 144 PHE n 1 145 ASN n 1 146 THR n 1 147 LEU n 1 148 ASP n 1 149 PHE n 1 150 ASN n 1 151 LYS n 1 152 ASN n 1 153 GLY n 1 154 GLN n 1 155 ILE n 1 156 SER n 1 157 ARG n 1 158 ASP n 1 159 GLU n 1 160 PHE n 1 161 LEU n 1 162 VAL n 1 163 THR n 1 164 VAL n 1 165 ASN n 1 166 ASP n 1 167 PHE n 1 168 LEU n 1 169 PHE n 1 170 GLY n 1 171 LEU n 1 172 GLU n 1 173 GLU n 1 174 THR n 1 175 ALA n 1 176 LEU n 1 177 ALA n 1 178 ASN n 1 179 ALA n 1 180 PHE n 1 181 TYR n 1 182 GLY n 1 183 ASP n 1 184 LEU n 1 185 VAL n 1 186 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Renilla _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Renilla muelleri' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 37510 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2HPS _struct_ref.pdbx_db_accession 2HPS _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HPS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 186 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2HPS _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 186 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 186 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CTZ non-polymer . C2-HYDROXY-COELENTERAZINE '8-BENZYL-2-HYDROXY-2-(4-HYDROXY-BENZYL)-6-(4-HYDROXY-PHENYL)-2H-IMIDAZO[1,2-A]PYRAZIN-3-ONE' 'C26 H21 N3 O4' 439.463 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2HPS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.12 _exptl_crystal.density_percent_sol 60.61 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details ;2 microliter drops containing equal volumes of protein solution (12 mg/ml) and precipitate solution (0.5M ammonium sulfate, 0.1M sodium citrate dihydrate, 1M lithium sulfate monohydrate), pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2005-11-26 _diffrn_detector.details Rosenbaum # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI CHANNEL 220' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.979 # _reflns.entry_id 2HPS _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_high 1.72 _reflns.d_resolution_low 10 _reflns.number_all ? _reflns.number_obs 27912 _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.07 _reflns.pdbx_netI_over_sigmaI 25.30 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 13.00 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.72 _reflns_shell.d_res_low 1.78 _reflns_shell.percent_possible_all 87.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.33 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 2.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2510 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2HPS _refine.ls_number_reflns_obs 27912 _refine.ls_number_reflns_all 27921 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 1.72 _refine.ls_percent_reflns_obs 98.57 _refine.ls_R_factor_obs 0.20024 _refine.ls_R_factor_all 0.20024 _refine.ls_R_factor_R_work 0.19879 _refine.ls_R_factor_R_free 0.22887 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1489 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.939 _refine.B_iso_mean 18.613 _refine.aniso_B[1][1] 0.03 _refine.aniso_B[2][2] 0.03 _refine.aniso_B[3][3] -0.05 _refine.aniso_B[1][2] 0.02 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.098 _refine.pdbx_overall_ESU_R_Free 0.099 _refine.overall_SU_ML 0.060 _refine.overall_SU_B 1.796 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1435 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 176 _refine_hist.number_atoms_total 1655 _refine_hist.d_res_high 1.72 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.022 ? 1518 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.314 2.003 ? 2045 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.249 5.000 ? 182 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 28.859 24.595 ? 74 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.082 15.000 ? 269 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.576 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.087 0.200 ? 231 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1136 'X-RAY DIFFRACTION' ? r_nbd_refined 0.205 0.200 ? 773 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.303 0.200 ? 1089 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.121 0.200 ? 130 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.154 0.200 ? 31 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.063 0.200 ? 11 'X-RAY DIFFRACTION' ? r_mcbond_it 0.852 1.500 ? 945 'X-RAY DIFFRACTION' ? r_mcangle_it 1.166 2.000 ? 1472 'X-RAY DIFFRACTION' ? r_scbond_it 2.358 3.000 ? 663 'X-RAY DIFFRACTION' ? r_scangle_it 3.148 4.500 ? 573 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.723 _refine_ls_shell.d_res_low 1.767 _refine_ls_shell.number_reflns_R_work 1731 _refine_ls_shell.R_factor_R_work 0.274 _refine_ls_shell.percent_reflns_obs 87.69 _refine_ls_shell.R_factor_R_free 0.325 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 107 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2HPS _struct.title 'Crystal structure of coelenterazine-binding protein from Renilla Muelleri' _struct.pdbx_descriptor 'coelenterazine-binding protein with bound coelenterazine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HPS _struct_keywords.pdbx_keywords 'LUMINESCENT PROTEIN' _struct_keywords.text ;bioluminescence, coelenterazine-binding, Southeast Collaboratory for Structural Genomics, SECSG, Structural Genomics, PSI, Protein Structure Initiative, LUMINESCENT PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 5 ? ARG A 22 ? THR A 5 ARG A 22 1 ? 18 HELX_P HELX_P2 2 ARG A 33 ? LYS A 48 ? ARG A 33 LYS A 48 1 ? 16 HELX_P HELX_P3 3 SER A 50 ? GLY A 69 ? SER A 50 GLY A 69 1 ? 20 HELX_P HELX_P4 4 VAL A 78 ? MSE A 92 ? VAL A 78 MSE A 92 1 ? 15 HELX_P HELX_P5 5 GLY A 94 ? ALA A 100 ? GLY A 94 ALA A 100 1 ? 7 HELX_P HELX_P6 6 VAL A 101 ? ASP A 112 ? VAL A 101 ASP A 112 1 ? 12 HELX_P HELX_P7 7 LEU A 121 ? GLY A 132 ? LEU A 121 GLY A 132 1 ? 12 HELX_P HELX_P8 8 THR A 136 ? ASP A 148 ? THR A 136 ASP A 148 1 ? 13 HELX_P HELX_P9 9 ARG A 157 ? GLY A 170 ? ARG A 157 GLY A 170 1 ? 14 HELX_P HELX_P10 10 THR A 174 ? TYR A 181 ? THR A 174 TYR A 181 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LYS 15 C ? ? ? 1_555 A MSE 16 N ? ? A LYS 15 A MSE 16 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A MSE 16 C ? ? ? 1_555 A LYS 17 N ? ? A MSE 16 A LYS 17 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale ? ? A ARG 19 C ? ? ? 1_555 A MSE 20 N ? ? A ARG 19 A MSE 20 1_555 ? ? ? ? ? ? ? 1.324 ? covale4 covale ? ? A MSE 20 C ? ? ? 1_555 A GLN 21 N ? ? A MSE 20 A GLN 21 1_555 ? ? ? ? ? ? ? 1.335 ? covale5 covale ? ? A LYS 91 C ? ? ? 1_555 A MSE 92 N ? ? A LYS 91 A MSE 92 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? A MSE 92 C ? ? ? 1_555 A LYS 93 N ? ? A MSE 92 A LYS 93 1_555 ? ? ? ? ? ? ? 1.334 ? covale7 covale ? ? A ALA 98 C ? ? ? 1_555 A MSE 99 N ? ? A ALA 98 A MSE 99 1_555 ? ? ? ? ? ? ? 1.332 ? covale8 covale ? ? A MSE 99 C ? ? ? 1_555 A ALA 100 N ? ? A MSE 99 A ALA 100 1_555 ? ? ? ? ? ? ? 1.338 ? covale9 covale ? ? A ILE 106 C ? ? ? 1_555 A MSE 107 N ? ? A ILE 106 A MSE 107 1_555 ? ? ? ? ? ? ? 1.338 ? covale10 covale ? ? A MSE 107 C ? ? ? 1_555 A TYR 108 N ? ? A MSE 107 A TYR 108 1_555 ? ? ? ? ? ? ? 1.334 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 30 ? SER A 32 ? PHE A 30 SER A 32 A 2 ARG A 75 ? SER A 77 ? ARG A 75 SER A 77 B 1 TYR A 118 ? SER A 120 ? TYR A 118 SER A 120 B 2 GLN A 154 ? SER A 156 ? GLN A 154 SER A 156 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 31 ? N ILE A 31 O ILE A 76 ? O ILE A 76 B 1 2 N VAL A 119 ? N VAL A 119 O ILE A 155 ? O ILE A 155 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 13 'BINDING SITE FOR RESIDUE CTZ A 187' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL A 376' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE GOL A 377' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 ARG A 19 ? ARG A 19 . ? 1_555 ? 2 AC1 13 ARG A 22 ? ARG A 22 . ? 1_555 ? 3 AC1 13 TYR A 36 ? TYR A 36 . ? 1_555 ? 4 AC1 13 ILE A 39 ? ILE A 39 . ? 1_555 ? 5 AC1 13 PHE A 124 ? PHE A 124 . ? 1_555 ? 6 AC1 13 LEU A 135 ? LEU A 135 . ? 1_555 ? 7 AC1 13 LYS A 139 ? LYS A 139 . ? 1_555 ? 8 AC1 13 PHE A 180 ? PHE A 180 . ? 1_555 ? 9 AC1 13 TYR A 181 ? TYR A 181 . ? 1_555 ? 10 AC1 13 GLY A 182 ? GLY A 182 . ? 1_555 ? 11 AC1 13 HOH E . ? HOH A 189 . ? 1_555 ? 12 AC1 13 HOH E . ? HOH A 199 . ? 1_555 ? 13 AC1 13 HOH E . ? HOH A 226 . ? 1_555 ? 14 AC2 3 ARG A 63 ? ARG A 63 . ? 1_555 ? 15 AC2 3 GLN A 67 ? GLN A 67 . ? 1_555 ? 16 AC2 3 HOH E . ? HOH A 303 . ? 1_555 ? 17 AC3 4 GLY A 94 ? GLY A 94 . ? 1_555 ? 18 AC3 4 LYS A 97 ? LYS A 97 . ? 1_555 ? 19 AC3 4 ARG A 157 ? ARG A 157 . ? 9_555 ? 20 AC3 4 HOH E . ? HOH A 285 . ? 1_555 ? # _database_PDB_matrix.entry_id 2HPS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2HPS _atom_sites.fract_transf_matrix[1][1] 0.017874 _atom_sites.fract_transf_matrix[1][2] 0.010319 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020639 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003422 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 PRO 2 2 ? ? ? A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 HIS 12 12 12 HIS HIS A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 MSE 16 16 16 MSE MSE A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 MSE 20 20 20 MSE MSE A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 ARG 33 33 33 ARG ARG A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 GLN 67 67 67 GLN GLN A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 MSE 92 92 92 MSE MSE A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 MSE 99 99 99 MSE MSE A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 GLN 103 103 103 GLN GLN A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 MSE 107 107 107 MSE MSE A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 CYS 110 110 110 CYS CYS A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 ASP 112 112 112 ASP ASP A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 ASP 114 114 114 ASP ASP A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 VAL 119 119 119 VAL VAL A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 PRO 122 122 122 PRO PRO A . n A 1 123 GLU 123 123 123 GLU GLU A . n A 1 124 PHE 124 124 124 PHE PHE A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 PHE 127 127 127 PHE PHE A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 GLN 129 129 129 GLN GLN A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 VAL 131 131 131 VAL VAL A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 PRO 133 133 133 PRO PRO A . n A 1 134 ASP 134 134 134 ASP ASP A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 ASP 137 137 137 ASP ASP A . n A 1 138 ASP 138 138 138 ASP ASP A . n A 1 139 LYS 139 139 139 LYS LYS A . n A 1 140 ALA 140 140 140 ALA ALA A . n A 1 141 ILE 141 141 141 ILE ILE A . n A 1 142 THR 142 142 142 THR THR A . n A 1 143 CYS 143 143 143 CYS CYS A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 ASN 145 145 145 ASN ASN A . n A 1 146 THR 146 146 146 THR THR A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 ASP 148 148 148 ASP ASP A . n A 1 149 PHE 149 149 149 PHE PHE A . n A 1 150 ASN 150 150 150 ASN ASN A . n A 1 151 LYS 151 151 151 LYS LYS A . n A 1 152 ASN 152 152 152 ASN ASN A . n A 1 153 GLY 153 153 153 GLY GLY A . n A 1 154 GLN 154 154 154 GLN GLN A . n A 1 155 ILE 155 155 155 ILE ILE A . n A 1 156 SER 156 156 156 SER SER A . n A 1 157 ARG 157 157 157 ARG ARG A . n A 1 158 ASP 158 158 158 ASP ASP A . n A 1 159 GLU 159 159 159 GLU GLU A . n A 1 160 PHE 160 160 160 PHE PHE A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 VAL 162 162 162 VAL VAL A . n A 1 163 THR 163 163 163 THR THR A . n A 1 164 VAL 164 164 164 VAL VAL A . n A 1 165 ASN 165 165 165 ASN ASN A . n A 1 166 ASP 166 166 166 ASP ASP A . n A 1 167 PHE 167 167 167 PHE PHE A . n A 1 168 LEU 168 168 168 LEU LEU A . n A 1 169 PHE 169 169 169 PHE PHE A . n A 1 170 GLY 170 170 170 GLY GLY A . n A 1 171 LEU 171 171 171 LEU LEU A . n A 1 172 GLU 172 172 172 GLU GLU A . n A 1 173 GLU 173 173 173 GLU GLU A . n A 1 174 THR 174 174 174 THR THR A . n A 1 175 ALA 175 175 175 ALA ALA A . n A 1 176 LEU 176 176 176 LEU LEU A . n A 1 177 ALA 177 177 177 ALA ALA A . n A 1 178 ASN 178 178 178 ASN ASN A . n A 1 179 ALA 179 179 179 ALA ALA A . n A 1 180 PHE 180 180 180 PHE PHE A . n A 1 181 TYR 181 181 181 TYR TYR A . n A 1 182 GLY 182 182 182 GLY GLY A . n A 1 183 ASP 183 183 183 ASP ASP A . n A 1 184 LEU 184 184 184 LEU LEU A . n A 1 185 VAL 185 185 185 VAL VAL A . n A 1 186 ASP 186 186 186 ASP ASP A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Southeast Collaboratory for Structural Genomics' _pdbx_SG_project.initial_of_center SECSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CTZ 1 187 187 CTZ CTZ A . C 3 GOL 1 376 376 GOL GOL A . D 3 GOL 1 377 377 GOL GOL A . E 4 HOH 1 188 188 HOH HOH A . E 4 HOH 2 189 189 HOH HOH A . E 4 HOH 3 190 190 HOH HOH A . E 4 HOH 4 191 191 HOH HOH A . E 4 HOH 5 192 192 HOH HOH A . E 4 HOH 6 193 193 HOH HOH A . E 4 HOH 7 194 194 HOH HOH A . E 4 HOH 8 195 195 HOH HOH A . E 4 HOH 9 196 196 HOH HOH A . E 4 HOH 10 197 197 HOH HOH A . E 4 HOH 11 198 198 HOH HOH A . E 4 HOH 12 199 199 HOH HOH A . E 4 HOH 13 200 200 HOH HOH A . E 4 HOH 14 201 201 HOH HOH A . E 4 HOH 15 202 202 HOH HOH A . E 4 HOH 16 203 203 HOH HOH A . E 4 HOH 17 204 204 HOH HOH A . E 4 HOH 18 205 205 HOH HOH A . E 4 HOH 19 206 206 HOH HOH A . E 4 HOH 20 207 207 HOH HOH A . E 4 HOH 21 208 208 HOH HOH A . E 4 HOH 22 209 209 HOH HOH A . E 4 HOH 23 210 210 HOH HOH A . E 4 HOH 24 211 211 HOH HOH A . E 4 HOH 25 212 212 HOH HOH A . E 4 HOH 26 213 213 HOH HOH A . E 4 HOH 27 214 214 HOH HOH A . E 4 HOH 28 215 215 HOH HOH A . E 4 HOH 29 216 216 HOH HOH A . E 4 HOH 30 217 217 HOH HOH A . E 4 HOH 31 218 218 HOH HOH A . E 4 HOH 32 219 219 HOH HOH A . E 4 HOH 33 220 220 HOH HOH A . E 4 HOH 34 221 221 HOH HOH A . E 4 HOH 35 222 222 HOH HOH A . E 4 HOH 36 223 223 HOH HOH A . E 4 HOH 37 224 224 HOH HOH A . E 4 HOH 38 225 225 HOH HOH A . E 4 HOH 39 226 226 HOH HOH A . E 4 HOH 40 227 227 HOH HOH A . E 4 HOH 41 228 228 HOH HOH A . E 4 HOH 42 229 229 HOH HOH A . E 4 HOH 43 230 230 HOH HOH A . E 4 HOH 44 231 231 HOH HOH A . E 4 HOH 45 232 232 HOH HOH A . E 4 HOH 46 233 233 HOH HOH A . E 4 HOH 47 234 234 HOH HOH A . E 4 HOH 48 235 235 HOH HOH A . E 4 HOH 49 236 236 HOH HOH A . E 4 HOH 50 237 237 HOH HOH A . E 4 HOH 51 238 238 HOH HOH A . E 4 HOH 52 239 239 HOH HOH A . E 4 HOH 53 240 240 HOH HOH A . E 4 HOH 54 241 241 HOH HOH A . E 4 HOH 55 242 242 HOH HOH A . E 4 HOH 56 243 243 HOH HOH A . E 4 HOH 57 244 244 HOH HOH A . E 4 HOH 58 245 245 HOH HOH A . E 4 HOH 59 246 246 HOH HOH A . E 4 HOH 60 247 247 HOH HOH A . E 4 HOH 61 248 248 HOH HOH A . E 4 HOH 62 249 249 HOH HOH A . E 4 HOH 63 250 250 HOH HOH A . E 4 HOH 64 251 251 HOH HOH A . E 4 HOH 65 252 252 HOH HOH A . E 4 HOH 66 253 253 HOH HOH A . E 4 HOH 67 254 254 HOH HOH A . E 4 HOH 68 255 255 HOH HOH A . E 4 HOH 69 256 256 HOH HOH A . E 4 HOH 70 257 257 HOH HOH A . E 4 HOH 71 258 258 HOH HOH A . E 4 HOH 72 259 259 HOH HOH A . E 4 HOH 73 260 260 HOH HOH A . E 4 HOH 74 262 262 HOH HOH A . E 4 HOH 75 263 263 HOH HOH A . E 4 HOH 76 264 264 HOH HOH A . E 4 HOH 77 265 265 HOH HOH A . E 4 HOH 78 266 266 HOH HOH A . E 4 HOH 79 267 267 HOH HOH A . E 4 HOH 80 268 268 HOH HOH A . E 4 HOH 81 269 269 HOH HOH A . E 4 HOH 82 270 270 HOH HOH A . E 4 HOH 83 271 271 HOH HOH A . E 4 HOH 84 272 272 HOH HOH A . E 4 HOH 85 273 273 HOH HOH A . E 4 HOH 86 274 274 HOH HOH A . E 4 HOH 87 275 275 HOH HOH A . E 4 HOH 88 276 276 HOH HOH A . E 4 HOH 89 277 277 HOH HOH A . E 4 HOH 90 278 278 HOH HOH A . E 4 HOH 91 279 279 HOH HOH A . E 4 HOH 92 280 280 HOH HOH A . E 4 HOH 93 281 281 HOH HOH A . E 4 HOH 94 282 282 HOH HOH A . E 4 HOH 95 283 283 HOH HOH A . E 4 HOH 96 284 284 HOH HOH A . E 4 HOH 97 285 285 HOH HOH A . E 4 HOH 98 286 286 HOH HOH A . E 4 HOH 99 287 287 HOH HOH A . E 4 HOH 100 288 288 HOH HOH A . E 4 HOH 101 289 289 HOH HOH A . E 4 HOH 102 290 290 HOH HOH A . E 4 HOH 103 291 291 HOH HOH A . E 4 HOH 104 292 292 HOH HOH A . E 4 HOH 105 293 293 HOH HOH A . E 4 HOH 106 294 294 HOH HOH A . E 4 HOH 107 295 295 HOH HOH A . E 4 HOH 108 296 296 HOH HOH A . E 4 HOH 109 297 297 HOH HOH A . E 4 HOH 110 298 298 HOH HOH A . E 4 HOH 111 299 299 HOH HOH A . E 4 HOH 112 300 300 HOH HOH A . E 4 HOH 113 301 301 HOH HOH A . E 4 HOH 114 302 302 HOH HOH A . E 4 HOH 115 303 303 HOH HOH A . E 4 HOH 116 304 304 HOH HOH A . E 4 HOH 117 305 305 HOH HOH A . E 4 HOH 118 306 306 HOH HOH A . E 4 HOH 119 307 307 HOH HOH A . E 4 HOH 120 308 308 HOH HOH A . E 4 HOH 121 309 309 HOH HOH A . E 4 HOH 122 310 310 HOH HOH A . E 4 HOH 123 311 311 HOH HOH A . E 4 HOH 124 312 312 HOH HOH A . E 4 HOH 125 313 313 HOH HOH A . E 4 HOH 126 314 314 HOH HOH A . E 4 HOH 127 316 316 HOH HOH A . E 4 HOH 128 317 317 HOH HOH A . E 4 HOH 129 318 318 HOH HOH A . E 4 HOH 130 319 319 HOH HOH A . E 4 HOH 131 320 320 HOH HOH A . E 4 HOH 132 321 321 HOH HOH A . E 4 HOH 133 322 322 HOH HOH A . E 4 HOH 134 323 323 HOH HOH A . E 4 HOH 135 324 324 HOH HOH A . E 4 HOH 136 325 325 HOH HOH A . E 4 HOH 137 326 326 HOH HOH A . E 4 HOH 138 327 327 HOH HOH A . E 4 HOH 139 328 328 HOH HOH A . E 4 HOH 140 329 329 HOH HOH A . E 4 HOH 141 330 330 HOH HOH A . E 4 HOH 142 331 331 HOH HOH A . E 4 HOH 143 332 332 HOH HOH A . E 4 HOH 144 333 333 HOH HOH A . E 4 HOH 145 335 335 HOH HOH A . E 4 HOH 146 337 337 HOH HOH A . E 4 HOH 147 338 338 HOH HOH A . E 4 HOH 148 339 339 HOH HOH A . E 4 HOH 149 340 340 HOH HOH A . E 4 HOH 150 341 341 HOH HOH A . E 4 HOH 151 342 342 HOH HOH A . E 4 HOH 152 343 343 HOH HOH A . E 4 HOH 153 344 344 HOH HOH A . E 4 HOH 154 346 346 HOH HOH A . E 4 HOH 155 347 347 HOH HOH A . E 4 HOH 156 348 348 HOH HOH A . E 4 HOH 157 349 349 HOH HOH A . E 4 HOH 158 350 350 HOH HOH A . E 4 HOH 159 351 351 HOH HOH A . E 4 HOH 160 353 353 HOH HOH A . E 4 HOH 161 354 354 HOH HOH A . E 4 HOH 162 355 355 HOH HOH A . E 4 HOH 163 356 356 HOH HOH A . E 4 HOH 164 358 358 HOH HOH A . E 4 HOH 165 360 360 HOH HOH A . E 4 HOH 166 361 361 HOH HOH A . E 4 HOH 167 362 362 HOH HOH A . E 4 HOH 168 363 363 HOH HOH A . E 4 HOH 169 364 364 HOH HOH A . E 4 HOH 170 365 365 HOH HOH A . E 4 HOH 171 366 366 HOH HOH A . E 4 HOH 172 369 369 HOH HOH A . E 4 HOH 173 370 370 HOH HOH A . E 4 HOH 174 372 372 HOH HOH A . E 4 HOH 175 374 374 HOH HOH A . E 4 HOH 176 375 375 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 16 A MSE 16 ? MET SELENOMETHIONINE 2 A MSE 20 A MSE 20 ? MET SELENOMETHIONINE 3 A MSE 92 A MSE 92 ? MET SELENOMETHIONINE 4 A MSE 99 A MSE 99 ? MET SELENOMETHIONINE 5 A MSE 107 A MSE 107 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-01-09 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 SCA2STRUCTURE phasing . ? 4 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE Currently there is no aminoacid sequence database reference available for the protein ; # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 SE A MSE 107 ? ? CE A MSE 107 ? ? 1.465 1.950 -0.485 0.059 N 2 1 C A VAL 185 ? ? N A ASP 186 ? ? 1.486 1.336 0.150 0.023 Y # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C2 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id CTZ _pdbx_validate_chiral.auth_seq_id 187 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 3 ? CG ? A GLU 3 CG 2 1 Y 1 A GLU 3 ? CD ? A GLU 3 CD 3 1 Y 1 A GLU 3 ? OE1 ? A GLU 3 OE1 4 1 Y 1 A GLU 3 ? OE2 ? A GLU 3 OE2 5 1 Y 1 A LYS 48 ? CE ? A LYS 48 CE 6 1 Y 1 A LYS 48 ? NZ ? A LYS 48 NZ 7 1 Y 1 A LYS 91 ? CE ? A LYS 91 CE 8 1 Y 1 A LYS 91 ? NZ ? A LYS 91 NZ 9 1 Y 1 A LYS 93 ? CE ? A LYS 93 CE 10 1 Y 1 A LYS 93 ? NZ ? A LYS 93 NZ 11 1 N 1 A CTZ 187 ? O33 ? B CTZ 1 O33 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A PRO 2 ? A PRO 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 C2-HYDROXY-COELENTERAZINE CTZ 3 GLYCEROL GOL 4 water HOH #