data_2HYZ # _entry.id 2HYZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2HYZ RCSB RCSB038928 WWPDB D_1000038928 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2FO7 . unspecified PDB 2AVP . unspecified # _pdbx_database_status.entry_id 2HYZ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-08-08 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kajander, T.' 1 'Cortajarena, A.L.' 2 'Regan, L.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structure and stability of designed TPR protein superhelices: unusual crystal packing and implications for natural TPR proteins.' 'Acta Crystallogr.,Sect.D' 63 800 811 2007 ABCRE6 DK 0907-4449 0766 ? 17582171 10.1107/S0907444907024353 1 'A new folding paradigm for repeat proteins.' J.Am.Chem.Soc. 127 10188 10190 2005 JACSAT US 0002-7863 0004 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kajander, T.' 1 primary 'Cortajarena, A.L.' 2 primary 'Mochrie, S.' 3 primary 'Regan, L.' 4 1 'Kajander, T.' 5 1 'Cortajarena, A.L.' 6 1 'Main, E.' 7 1 'Mochrie, S.' 8 1 'Regan, L.' 9 # _cell.entry_id 2HYZ _cell.length_a 36.156 _cell.length_b 67.695 _cell.length_c 70.785 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HYZ _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'SYNTHETIC CONSENSUS TPR PROTEIN' 16151.237 1 ? ? ? ? 2 non-polymer syn 'SAMARIUM (III) ION' 150.360 3 ? ? ? ? 3 water nat water 18.015 25 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS ; _entity_poly.pdbx_seq_one_letter_code_can ;AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 GLU n 1 3 ALA n 1 4 TRP n 1 5 TYR n 1 6 ASN n 1 7 LEU n 1 8 GLY n 1 9 ASN n 1 10 ALA n 1 11 TYR n 1 12 TYR n 1 13 LYS n 1 14 GLN n 1 15 GLY n 1 16 ASP n 1 17 TYR n 1 18 ASP n 1 19 GLU n 1 20 ALA n 1 21 ILE n 1 22 GLU n 1 23 TYR n 1 24 TYR n 1 25 GLN n 1 26 LYS n 1 27 ALA n 1 28 LEU n 1 29 GLU n 1 30 LEU n 1 31 ASP n 1 32 PRO n 1 33 ARG n 1 34 SER n 1 35 ALA n 1 36 GLU n 1 37 ALA n 1 38 TRP n 1 39 TYR n 1 40 ASN n 1 41 LEU n 1 42 GLY n 1 43 ASN n 1 44 ALA n 1 45 TYR n 1 46 TYR n 1 47 LYS n 1 48 GLN n 1 49 GLY n 1 50 ASP n 1 51 TYR n 1 52 ASP n 1 53 GLU n 1 54 ALA n 1 55 ILE n 1 56 GLU n 1 57 TYR n 1 58 TYR n 1 59 GLN n 1 60 LYS n 1 61 ALA n 1 62 LEU n 1 63 GLU n 1 64 LEU n 1 65 ASP n 1 66 PRO n 1 67 ARG n 1 68 SER n 1 69 ALA n 1 70 GLU n 1 71 ALA n 1 72 TRP n 1 73 TYR n 1 74 ASN n 1 75 LEU n 1 76 GLY n 1 77 ASN n 1 78 ALA n 1 79 TYR n 1 80 TYR n 1 81 LYS n 1 82 GLN n 1 83 GLY n 1 84 ASP n 1 85 TYR n 1 86 ASP n 1 87 GLU n 1 88 ALA n 1 89 ILE n 1 90 GLU n 1 91 TYR n 1 92 TYR n 1 93 GLN n 1 94 LYS n 1 95 ALA n 1 96 LEU n 1 97 GLU n 1 98 LEU n 1 99 ASP n 1 100 PRO n 1 101 ARG n 1 102 SER n 1 103 ALA n 1 104 GLU n 1 105 ALA n 1 106 TRP n 1 107 TYR n 1 108 ASN n 1 109 LEU n 1 110 GLY n 1 111 ASN n 1 112 ALA n 1 113 TYR n 1 114 TYR n 1 115 LYS n 1 116 GLN n 1 117 GLY n 1 118 ASP n 1 119 TYR n 1 120 ASP n 1 121 GLU n 1 122 ALA n 1 123 ILE n 1 124 GLU n 1 125 TYR n 1 126 TYR n 1 127 GLN n 1 128 LYS n 1 129 ALA n 1 130 LEU n 1 131 GLU n 1 132 LEU n 1 133 ASP n 1 134 PRO n 1 135 ARG n 1 136 SER n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'THE SEQUENCE OF THE PROTEIN WAS DESIGNED AND THEN EXPRESSED IN E.COLI BL21(DE3), PLASMID pPRO-XHTA' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2HYZ _struct_ref.pdbx_db_accession 2HYZ _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HYZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 136 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2HYZ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 136 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 136 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SM non-polymer . 'SAMARIUM (III) ION' ? 'Sm 3' 150.360 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.crystals_number 1 _exptl.entry_id 2HYZ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.68 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 54.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '100 mM Acetate, 25% MPD, 50 mM SmCl3, pH 5.0, VAPOR DIFFUSION, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2004-08-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'SI 111 CHANNEL' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.50 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X6A' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.50 _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X6A # _reflns.entry_id 2HYZ _reflns.d_resolution_high 2.300 _reflns.d_resolution_low 50.000 _reflns.number_obs 14975 _reflns.pdbx_Rmerge_I_obs 0.101 _reflns.pdbx_netI_over_sigmaI 9.200 _reflns.pdbx_chi_squared 1.609 _reflns.pdbx_redundancy 3.400 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.number_all 14975 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.30 2.38 ? ? ? 0.208 ? ? 0.926 2.80 ? 1498 99.50 ? 1 2.38 2.48 ? ? ? 0.187 ? ? 1.012 3.40 ? 1497 100.00 ? 2 2.48 2.59 ? ? ? 0.168 ? ? 1.082 3.50 ? 1502 100.00 ? 3 2.59 2.73 ? ? ? 0.154 ? ? 1.160 3.50 ? 1501 100.00 ? 4 2.73 2.90 ? ? ? 0.137 ? ? 1.427 3.50 ? 1477 99.90 ? 5 2.90 3.12 ? ? ? 0.128 ? ? 1.604 3.50 ? 1510 99.90 ? 6 3.12 3.44 ? ? ? 0.115 ? ? 2.136 3.50 ? 1479 100.00 ? 7 3.44 3.93 ? ? ? 0.104 ? ? 2.655 3.50 ? 1514 99.90 ? 8 3.93 4.95 ? ? ? 0.084 ? ? 2.531 3.50 ? 1494 99.80 ? 9 4.95 50.00 ? ? ? 0.054 ? ? 1.318 3.50 ? 1503 99.50 ? 10 # _refine.entry_id 2HYZ _refine.ls_d_res_high 2.300 _refine.ls_d_res_low 20.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.980 _refine.ls_number_reflns_obs 8153 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_all 0.217 _refine.ls_R_factor_R_work 0.213 _refine.ls_R_factor_R_free 0.27 _refine.ls_percent_reflns_R_free 6.900 _refine.ls_number_reflns_R_free 563 _refine.B_iso_mean 31.527 _refine.aniso_B[1][1] -0.130 _refine.aniso_B[2][2] 0.580 _refine.aniso_B[3][3] -0.450 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.917 _refine.correlation_coeff_Fo_to_Fc_free 0.872 _refine.pdbx_overall_ESU_R 0.291 _refine.pdbx_overall_ESU_R_Free 0.241 _refine.overall_SU_ML 0.135 _refine.overall_SU_B 5.224 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 8153 _refine.ls_R_factor_obs 0.217 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1057 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 25 _refine_hist.number_atoms_total 1085 _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1091 0.016 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1498 1.259 1.924 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 135 6.628 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 61 34.501 24.918 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 123 13.397 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 2 26.789 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 142 0.111 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 918 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 480 0.248 0.300 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 731 0.327 0.500 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 100 0.256 0.500 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 12 0.522 0.500 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 51 0.447 0.300 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 17 0.739 0.500 ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 5 0.787 0.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 685 2.576 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1030 3.527 3.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 515 3.074 2.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 468 4.164 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.300 _refine_ls_shell.d_res_low 2.359 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.830 _refine_ls_shell.number_reflns_R_work 549 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.181 _refine_ls_shell.R_factor_R_free 0.252 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 36 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 585 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2HYZ _struct.title 'Crystal structure of an 8 repeat consensus TPR superhelix (orthorombic crystal form)' _struct.pdbx_descriptor 'SYNTHETIC CONSENSUS TPR PROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HYZ _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' _struct_keywords.text 'TPR, tetratricopeptide, protein design, protein stability, superhelix, DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ;The asymmetric unit contains one half of the whole covalent protein molecule (4 TPR repeats), the other half is generated by crystallographic symmetry. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 1 ? GLY A 15 ? ALA A 1 GLY A 15 1 ? 15 HELX_P HELX_P2 2 ASP A 16 ? ASP A 31 ? ASP A 16 ASP A 31 1 ? 16 HELX_P HELX_P3 3 SER A 34 ? GLN A 48 ? SER A 34 GLN A 48 1 ? 15 HELX_P HELX_P4 4 ASP A 50 ? ASP A 65 ? ASP A 50 ASP A 65 1 ? 16 HELX_P HELX_P5 5 SER A 68 ? GLN A 82 ? SER A 68 GLN A 82 1 ? 15 HELX_P HELX_P6 6 ASP A 84 ? ASP A 99 ? ASP A 84 ASP A 99 1 ? 16 HELX_P HELX_P7 7 SER A 102 ? LYS A 115 ? SER A 102 LYS A 115 1 ? 14 HELX_P HELX_P8 8 ASP A 118 ? ASP A 133 ? ASP A 118 ASP A 133 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id ALA _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_label_atom_id N _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id SER _struct_conn.ptnr2_label_seq_id 136 _struct_conn.ptnr2_label_atom_id C _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ALA _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SER _struct_conn.ptnr2_auth_seq_id 136 _struct_conn.ptnr2_symmetry 2_564 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.530 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SM A 706' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SM A 707' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SM A 708' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLU A 56 ? GLU A 56 . ? 4_466 ? 2 AC1 4 ASP A 120 ? ASP A 120 . ? 1_555 ? 3 AC1 4 GLU A 121 ? GLU A 121 . ? 1_555 ? 4 AC1 4 HOH E . ? HOH A 729 . ? 1_555 ? 5 AC2 6 ASP A 18 ? ASP A 18 . ? 1_555 ? 6 AC2 6 GLU A 19 ? GLU A 19 . ? 1_555 ? 7 AC2 6 LEU A 98 ? LEU A 98 . ? 1_655 ? 8 AC2 6 HOH E . ? HOH A 731 . ? 1_555 ? 9 AC2 6 HOH E . ? HOH A 732 . ? 1_555 ? 10 AC2 6 HOH E . ? HOH A 733 . ? 1_555 ? 11 AC3 5 ASP A 52 ? ASP A 52 . ? 1_555 ? 12 AC3 5 GLU A 53 ? GLU A 53 . ? 1_555 ? 13 AC3 5 ASP A 86 ? ASP A 86 . ? 4_566 ? 14 AC3 5 GLN A 116 ? GLN A 116 . ? 4_566 ? 15 AC3 5 HOH E . ? HOH A 730 . ? 1_555 ? # _atom_sites.entry_id 2HYZ _atom_sites.fract_transf_matrix[1][1] 0.027658 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014772 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014127 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SM # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 TRP 4 4 4 TRP TRP A . n A 1 5 TYR 5 5 5 TYR TYR A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 TYR 24 24 24 TYR TYR A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 ARG 33 33 33 ARG ARG A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 TRP 38 38 38 TRP TRP A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 TYR 45 45 45 TYR TYR A . n A 1 46 TYR 46 46 46 TYR TYR A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 TYR 57 57 57 TYR TYR A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 PRO 66 66 66 PRO PRO A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 TRP 72 72 72 TRP TRP A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 TYR 85 85 85 TYR TYR A . n A 1 86 ASP 86 86 86 ASP ASP A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 GLN 93 93 93 GLN GLN A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 TRP 106 106 106 TRP TRP A . n A 1 107 TYR 107 107 107 TYR TYR A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 ASN 111 111 111 ASN ASN A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 TYR 113 113 113 TYR TYR A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 GLN 116 116 116 GLN GLN A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 TYR 119 119 119 TYR TYR A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 TYR 125 125 125 TYR TYR A . n A 1 126 TYR 126 126 126 TYR TYR A . n A 1 127 GLN 127 127 127 GLN GLN A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 ASP 133 133 133 ASP ASP A . n A 1 134 PRO 134 134 134 PRO PRO A . n A 1 135 ARG 135 135 135 ARG ARG A . n A 1 136 SER 136 136 136 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SM 1 706 706 SM SM A . C 2 SM 1 707 707 SM SM A . D 2 SM 1 708 708 SM SM A . E 3 HOH 1 709 1 HOH HOH A . E 3 HOH 2 710 2 HOH HOH A . E 3 HOH 3 711 3 HOH HOH A . E 3 HOH 4 712 4 HOH HOH A . E 3 HOH 5 713 5 HOH HOH A . E 3 HOH 6 714 6 HOH HOH A . E 3 HOH 7 715 7 HOH HOH A . E 3 HOH 8 716 8 HOH HOH A . E 3 HOH 9 717 9 HOH HOH A . E 3 HOH 10 718 10 HOH HOH A . E 3 HOH 11 719 11 HOH HOH A . E 3 HOH 12 720 12 HOH HOH A . E 3 HOH 13 721 13 HOH HOH A . E 3 HOH 14 722 14 HOH HOH A . E 3 HOH 15 723 15 HOH HOH A . E 3 HOH 16 724 16 HOH HOH A . E 3 HOH 17 725 17 HOH HOH A . E 3 HOH 18 726 18 HOH HOH A . E 3 HOH 19 727 19 HOH HOH A . E 3 HOH 20 728 20 HOH HOH A . E 3 HOH 21 729 21 HOH HOH A . E 3 HOH 22 730 22 HOH HOH A . E 3 HOH 23 731 23 HOH HOH A . E 3 HOH 24 732 24 HOH HOH A . E 3 HOH 25 733 25 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_564 -x+1/2,-y+1,z-1/2 -1.0000000000 0.0000000000 0.0000000000 18.0780000000 0.0000000000 -1.0000000000 0.0000000000 67.6950000000 0.0000000000 0.0000000000 1.0000000000 -35.3925000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-02-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.300 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 14975 _diffrn_reflns.pdbx_Rmerge_I_obs 0.101 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.61 _diffrn_reflns.av_sigmaI_over_netI 9.20 _diffrn_reflns.pdbx_redundancy 3.40 _diffrn_reflns.pdbx_percent_possible_obs 99.90 _diffrn_reflns.number 51310 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 4.95 50.00 ? ? 0.054 ? 1.318 3.50 99.50 1 3.93 4.95 ? ? 0.084 ? 2.531 3.50 99.80 1 3.44 3.93 ? ? 0.104 ? 2.655 3.50 99.90 1 3.12 3.44 ? ? 0.115 ? 2.136 3.50 100.00 1 2.90 3.12 ? ? 0.128 ? 1.604 3.50 99.90 1 2.73 2.90 ? ? 0.137 ? 1.427 3.50 99.90 1 2.59 2.73 ? ? 0.154 ? 1.160 3.50 100.00 1 2.48 2.59 ? ? 0.168 ? 1.082 3.50 100.00 1 2.38 2.48 ? ? 0.187 ? 1.012 3.40 100.00 1 2.30 2.38 ? ? 0.208 ? 0.926 2.80 99.50 # _pdbx_phasing_dm.entry_id 2HYZ _pdbx_phasing_dm.fom_acentric 0.760 _pdbx_phasing_dm.fom_centric 0.680 _pdbx_phasing_dm.fom 0.750 _pdbx_phasing_dm.reflns_acentric 5113 _pdbx_phasing_dm.reflns_centric 1083 _pdbx_phasing_dm.reflns 6196 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 7.100 25.294 ? ? 0.920 0.830 0.880 178 127 305 4.500 7.100 ? ? 0.880 0.770 0.850 655 222 877 3.600 4.500 ? ? 0.880 0.780 0.860 861 203 1064 3.100 3.600 ? ? 0.820 0.700 0.800 891 165 1056 2.700 3.100 ? ? 0.710 0.520 0.690 1568 240 1808 2.500 2.700 ? ? 0.580 0.470 0.570 960 126 1086 # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 SOLVE 2.06 28-Dec-2003 package 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 RESOLVE 2.06 02-Jan-2004 package 'Terwilliger, T. C' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 4 REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 5 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 8 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 400 ;COMPOUND THE COMPLETE CRYSTALLIZED SEQUENCE IS TWICE LONGER THAN THE SUBMITTED ONE. THE LINK RECORD IS PROVIDED TO CONNECT THE DEPOSITED PART OF THE SEQUENCE WITH THE SECOND PART OF THE COMPLETE CRYSTALLIZED 8-REPEAT MOLECULE THAT CAN BE GENERATED FROM THE DEPOSITED COORDINATES USING THE MATRIX PROVIDED IN REMARK 350. ; 300 ;BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). THE MOLECULE REPRESENTS A PSEUDO-INFINITE FIBER. THE SECOND PART OF THE COMPLETE COVALENT MOLECULE CAN BE GENERATED BY APPLYING THE MATRIX PROVIDED IN REMARK 350. ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 SM A SM 708 ? ? O A HOH 730 ? ? 2.01 2 1 OE2 A GLU 19 ? ? SM A SM 707 ? ? 2.03 3 1 OE1 A GLU 19 ? ? SM A SM 707 ? ? 2.09 4 1 OE2 A GLU 121 ? ? SM A SM 706 ? ? 2.10 5 1 O A HOH 711 ? ? O A HOH 720 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 N A ALA 1 ? ? 1_555 O A SER 136 ? ? 2_564 1.75 2 1 OD2 A ASP 86 ? ? 1_555 SM A SM 708 ? ? 4_466 1.95 3 1 O A LEU 98 ? ? 1_555 SM A SM 707 ? ? 1_455 1.96 4 1 OD2 A ASP 86 ? ? 1_555 O A HOH 730 ? ? 4_466 2.03 5 1 OE2 A GLU 56 ? ? 1_555 SM A SM 706 ? ? 4_566 2.15 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 50 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -106.87 _pdbx_validate_torsion.psi 78.82 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 2 ? CG ? A GLU 2 CG 2 1 Y 1 A GLU 2 ? CD ? A GLU 2 CD 3 1 Y 1 A GLU 2 ? OE1 ? A GLU 2 OE1 4 1 Y 1 A GLU 2 ? OE2 ? A GLU 2 OE2 5 1 Y 1 A LYS 26 ? CB ? A LYS 26 CB 6 1 Y 1 A LYS 26 ? CG ? A LYS 26 CG 7 1 Y 1 A LYS 26 ? CD ? A LYS 26 CD 8 1 Y 1 A LYS 26 ? CE ? A LYS 26 CE 9 1 Y 1 A LYS 26 ? NZ ? A LYS 26 NZ 10 1 Y 1 A GLU 29 ? CB ? A GLU 29 CB 11 1 Y 1 A GLU 29 ? CG ? A GLU 29 CG 12 1 Y 1 A GLU 29 ? CD ? A GLU 29 CD 13 1 Y 1 A GLU 29 ? OE1 ? A GLU 29 OE1 14 1 Y 1 A GLU 29 ? OE2 ? A GLU 29 OE2 15 1 Y 1 A ARG 33 ? CG ? A ARG 33 CG 16 1 Y 1 A ARG 33 ? CD ? A ARG 33 CD 17 1 Y 1 A ARG 33 ? NE ? A ARG 33 NE 18 1 Y 1 A ARG 33 ? CZ ? A ARG 33 CZ 19 1 Y 1 A ARG 33 ? NH1 ? A ARG 33 NH1 20 1 Y 1 A ARG 33 ? NH2 ? A ARG 33 NH2 21 1 Y 1 A GLU 36 ? CG ? A GLU 36 CG 22 1 Y 1 A GLU 36 ? CD ? A GLU 36 CD 23 1 Y 1 A GLU 36 ? OE1 ? A GLU 36 OE1 24 1 Y 1 A GLU 36 ? OE2 ? A GLU 36 OE2 25 1 Y 1 A LYS 47 ? CG ? A LYS 47 CG 26 1 Y 1 A LYS 47 ? CD ? A LYS 47 CD 27 1 Y 1 A LYS 47 ? CE ? A LYS 47 CE 28 1 Y 1 A LYS 47 ? NZ ? A LYS 47 NZ 29 1 Y 1 A LYS 60 ? CG ? A LYS 60 CG 30 1 Y 1 A LYS 60 ? CD ? A LYS 60 CD 31 1 Y 1 A LYS 60 ? CE ? A LYS 60 CE 32 1 Y 1 A LYS 60 ? NZ ? A LYS 60 NZ 33 1 Y 1 A GLU 63 ? CG ? A GLU 63 CG 34 1 Y 1 A GLU 63 ? CD ? A GLU 63 CD 35 1 Y 1 A GLU 63 ? OE1 ? A GLU 63 OE1 36 1 Y 1 A GLU 63 ? OE2 ? A GLU 63 OE2 37 1 Y 1 A SER 68 ? OG ? A SER 68 OG 38 1 Y 1 A GLU 70 ? CG ? A GLU 70 CG 39 1 Y 1 A GLU 70 ? CD ? A GLU 70 CD 40 1 Y 1 A GLU 70 ? OE1 ? A GLU 70 OE1 41 1 Y 1 A GLU 70 ? OE2 ? A GLU 70 OE2 42 1 Y 1 A ASP 84 ? CG ? A ASP 84 CG 43 1 Y 1 A ASP 84 ? OD1 ? A ASP 84 OD1 44 1 Y 1 A ASP 84 ? OD2 ? A ASP 84 OD2 45 1 Y 1 A GLU 87 ? CG ? A GLU 87 CG 46 1 Y 1 A GLU 87 ? CD ? A GLU 87 CD 47 1 Y 1 A GLU 87 ? OE1 ? A GLU 87 OE1 48 1 Y 1 A GLU 87 ? OE2 ? A GLU 87 OE2 49 1 Y 1 A GLU 90 ? CG ? A GLU 90 CG 50 1 Y 1 A GLU 90 ? CD ? A GLU 90 CD 51 1 Y 1 A GLU 90 ? OE1 ? A GLU 90 OE1 52 1 Y 1 A GLU 90 ? OE2 ? A GLU 90 OE2 53 1 Y 1 A LYS 94 ? CG ? A LYS 94 CG 54 1 Y 1 A LYS 94 ? CD ? A LYS 94 CD 55 1 Y 1 A LYS 94 ? CE ? A LYS 94 CE 56 1 Y 1 A LYS 94 ? NZ ? A LYS 94 NZ 57 1 Y 1 A SER 102 ? OG ? A SER 102 OG 58 1 Y 1 A GLU 104 ? CG ? A GLU 104 CG 59 1 Y 1 A GLU 104 ? CD ? A GLU 104 CD 60 1 Y 1 A GLU 104 ? OE1 ? A GLU 104 OE1 61 1 Y 1 A GLU 104 ? OE2 ? A GLU 104 OE2 62 1 Y 1 A TYR 114 ? CG ? A TYR 114 CG 63 1 Y 1 A TYR 114 ? CD1 ? A TYR 114 CD1 64 1 Y 1 A TYR 114 ? CD2 ? A TYR 114 CD2 65 1 Y 1 A TYR 114 ? CE1 ? A TYR 114 CE1 66 1 Y 1 A TYR 114 ? CE2 ? A TYR 114 CE2 67 1 Y 1 A TYR 114 ? CZ ? A TYR 114 CZ 68 1 Y 1 A TYR 114 ? OH ? A TYR 114 OH 69 1 Y 1 A GLU 124 ? CG ? A GLU 124 CG 70 1 Y 1 A GLU 124 ? CD ? A GLU 124 CD 71 1 Y 1 A GLU 124 ? OE1 ? A GLU 124 OE1 72 1 Y 1 A GLU 124 ? OE2 ? A GLU 124 OE2 73 1 Y 1 A GLN 127 ? CG ? A GLN 127 CG 74 1 Y 1 A GLN 127 ? CD ? A GLN 127 CD 75 1 Y 1 A GLN 127 ? OE1 ? A GLN 127 OE1 76 1 Y 1 A GLN 127 ? NE2 ? A GLN 127 NE2 77 1 Y 1 A LYS 128 ? CG ? A LYS 128 CG 78 1 Y 1 A LYS 128 ? CD ? A LYS 128 CD 79 1 Y 1 A LYS 128 ? CE ? A LYS 128 CE 80 1 Y 1 A LYS 128 ? NZ ? A LYS 128 NZ 81 1 Y 1 A GLU 131 ? CG ? A GLU 131 CG 82 1 Y 1 A GLU 131 ? CD ? A GLU 131 CD 83 1 Y 1 A GLU 131 ? OE1 ? A GLU 131 OE1 84 1 Y 1 A GLU 131 ? OE2 ? A GLU 131 OE2 85 1 Y 1 A ARG 135 ? CG ? A ARG 135 CG 86 1 Y 1 A ARG 135 ? CD ? A ARG 135 CD 87 1 Y 1 A ARG 135 ? NE ? A ARG 135 NE 88 1 Y 1 A ARG 135 ? CZ ? A ARG 135 CZ 89 1 Y 1 A ARG 135 ? NH1 ? A ARG 135 NH1 90 1 Y 1 A ARG 135 ? NH2 ? A ARG 135 NH2 91 1 Y 1 A SER 136 ? OG ? A SER 136 OG # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SAMARIUM (III) ION' SM 3 water HOH #