data_2I2F # _entry.id 2I2F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2I2F pdb_00002i2f 10.2210/pdb2i2f/pdb RCSB RCSB039051 ? ? WWPDB D_1000039051 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2I1W 'Crystal structure of NAD kinase 1 from Listeria monocytogenes' unspecified PDB 2I29 'Crystal structure of NAD kinase 1 from Listeria monocytogenes' unspecified PDB 2I2A 'Crystal structure of LmNADK1 from Listeria monocytogenes' unspecified PDB 2I2B 'Crystal structure of LmNADK1 from Listeria monocytogenes' unspecified PDB 2I2C 'Crystal structure of LmNADK1' unspecified PDB 2I2D 'Crystal structure of LmNADK1' unspecified PDB 2I2E 'Crystal structure of LmNADK1' unspecified # _pdbx_database_status.entry_id 2I2F _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-08-16 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Poncet-Montange, G.' 1 'Assairi, L.' 2 'Arold, S.' 3 'Pochet, S.' 4 'Labesse, G.' 5 # _citation.id primary _citation.title 'NAD kinases use substrate-assisted catalysis for specific recognition of NAD.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 282 _citation.page_first 33925 _citation.page_last 33934 _citation.year 2007 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17686780 _citation.pdbx_database_id_DOI 10.1074/jbc.M701394200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Poncet-Montange, G.' 1 ? primary 'Assairi, L.' 2 ? primary 'Arold, S.' 3 ? primary 'Pochet, S.' 4 ? primary 'Labesse, G.' 5 ? # _cell.entry_id 2I2F _cell.length_a 62.428 _cell.length_b 76.361 _cell.length_c 119.202 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2I2F _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Probable inorganic polyphosphate/ATP-NAD kinase 1' 31044.295 1 2.7.1.23 D45N ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 3 non-polymer syn NICOTINAMIDE-ADENINE-DINUCLEOTIDE 663.425 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 water nat water 18.015 59 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PolyP, /ATP NAD kinase 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGNGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRP AEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGT TAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSA KKIHFARFRSFPFWRRVHDSFIEDLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGNGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRP AEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGT TAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSA KKIHFARFRSFPFWRRVHDSFIEDLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 TYR n 1 4 MET n 1 5 ILE n 1 6 THR n 1 7 SER n 1 8 LYS n 1 9 GLY n 1 10 ASP n 1 11 GLU n 1 12 LYS n 1 13 SER n 1 14 ASP n 1 15 LEU n 1 16 LEU n 1 17 ARG n 1 18 LEU n 1 19 ASN n 1 20 MET n 1 21 ILE n 1 22 ALA n 1 23 GLY n 1 24 PHE n 1 25 GLY n 1 26 GLU n 1 27 TYR n 1 28 ASP n 1 29 MET n 1 30 GLU n 1 31 TYR n 1 32 ASP n 1 33 ASP n 1 34 VAL n 1 35 GLU n 1 36 PRO n 1 37 GLU n 1 38 ILE n 1 39 VAL n 1 40 ILE n 1 41 SER n 1 42 ILE n 1 43 GLY n 1 44 GLY n 1 45 ASN n 1 46 GLY n 1 47 THR n 1 48 PHE n 1 49 LEU n 1 50 SER n 1 51 ALA n 1 52 PHE n 1 53 HIS n 1 54 GLN n 1 55 TYR n 1 56 GLU n 1 57 GLU n 1 58 ARG n 1 59 LEU n 1 60 ASP n 1 61 GLU n 1 62 ILE n 1 63 ALA n 1 64 PHE n 1 65 ILE n 1 66 GLY n 1 67 ILE n 1 68 HIS n 1 69 THR n 1 70 GLY n 1 71 HIS n 1 72 LEU n 1 73 GLY n 1 74 PHE n 1 75 TYR n 1 76 ALA n 1 77 ASP n 1 78 TRP n 1 79 ARG n 1 80 PRO n 1 81 ALA n 1 82 GLU n 1 83 ALA n 1 84 ASP n 1 85 LYS n 1 86 LEU n 1 87 VAL n 1 88 LYS n 1 89 LEU n 1 90 LEU n 1 91 ALA n 1 92 LYS n 1 93 GLY n 1 94 GLU n 1 95 TYR n 1 96 GLN n 1 97 LYS n 1 98 VAL n 1 99 SER n 1 100 TYR n 1 101 PRO n 1 102 LEU n 1 103 LEU n 1 104 LYS n 1 105 THR n 1 106 THR n 1 107 VAL n 1 108 LYS n 1 109 TYR n 1 110 GLY n 1 111 ILE n 1 112 GLY n 1 113 LYS n 1 114 LYS n 1 115 GLU n 1 116 ALA n 1 117 THR n 1 118 TYR n 1 119 LEU n 1 120 ALA n 1 121 LEU n 1 122 ASN n 1 123 GLU n 1 124 SER n 1 125 THR n 1 126 VAL n 1 127 LYS n 1 128 SER n 1 129 SER n 1 130 GLY n 1 131 GLY n 1 132 PRO n 1 133 PHE n 1 134 VAL n 1 135 VAL n 1 136 ASP n 1 137 VAL n 1 138 VAL n 1 139 ILE n 1 140 ASN n 1 141 ASP n 1 142 ILE n 1 143 HIS n 1 144 PHE n 1 145 GLU n 1 146 ARG n 1 147 PHE n 1 148 ARG n 1 149 GLY n 1 150 ASP n 1 151 GLY n 1 152 LEU n 1 153 CYS n 1 154 MET n 1 155 SER n 1 156 THR n 1 157 PRO n 1 158 SER n 1 159 GLY n 1 160 THR n 1 161 THR n 1 162 ALA n 1 163 TYR n 1 164 ASN n 1 165 LYS n 1 166 SER n 1 167 LEU n 1 168 GLY n 1 169 GLY n 1 170 ALA n 1 171 LEU n 1 172 MET n 1 173 HIS n 1 174 PRO n 1 175 SER n 1 176 ILE n 1 177 GLU n 1 178 ALA n 1 179 MET n 1 180 GLN n 1 181 LEU n 1 182 THR n 1 183 GLU n 1 184 MET n 1 185 ALA n 1 186 SER n 1 187 ILE n 1 188 ASN n 1 189 ASN n 1 190 ARG n 1 191 VAL n 1 192 TYR n 1 193 ARG n 1 194 THR n 1 195 ILE n 1 196 GLY n 1 197 SER n 1 198 PRO n 1 199 LEU n 1 200 VAL n 1 201 PHE n 1 202 PRO n 1 203 LYS n 1 204 HIS n 1 205 HIS n 1 206 VAL n 1 207 VAL n 1 208 SER n 1 209 LEU n 1 210 GLN n 1 211 PRO n 1 212 VAL n 1 213 ASN n 1 214 ASP n 1 215 LYS n 1 216 ASP n 1 217 PHE n 1 218 GLN n 1 219 ILE n 1 220 SER n 1 221 VAL n 1 222 ASP n 1 223 HIS n 1 224 LEU n 1 225 SER n 1 226 ILE n 1 227 LEU n 1 228 HIS n 1 229 ARG n 1 230 ASP n 1 231 VAL n 1 232 GLN n 1 233 GLU n 1 234 ILE n 1 235 ARG n 1 236 TYR n 1 237 GLU n 1 238 VAL n 1 239 SER n 1 240 ALA n 1 241 LYS n 1 242 LYS n 1 243 ILE n 1 244 HIS n 1 245 PHE n 1 246 ALA n 1 247 ARG n 1 248 PHE n 1 249 ARG n 1 250 SER n 1 251 PHE n 1 252 PRO n 1 253 PHE n 1 254 TRP n 1 255 ARG n 1 256 ARG n 1 257 VAL n 1 258 HIS n 1 259 ASP n 1 260 SER n 1 261 PHE n 1 262 ILE n 1 263 GLU n 1 264 ASP n 1 265 LEU n 1 266 GLU n 1 267 HIS n 1 268 HIS n 1 269 HIS n 1 270 HIS n 1 271 HIS n 1 272 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Listeria _entity_src_gen.pdbx_gene_src_gene ppnK1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Listeria monocytogenes' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1639 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET22b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PPNK1_LISMO _struct_ref.pdbx_db_accession Q8Y8D7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRP AEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGT TAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSA KKIHFARFRSFPFWRRVHDSFIED ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2I2F _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 264 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8Y8D7 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 264 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 264 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2I2F ASN A 45 ? UNP Q8Y8D7 ASP 45 'engineered mutation' 45 1 1 2I2F LEU A 265 ? UNP Q8Y8D7 ? ? 'cloning artifact' 265 2 1 2I2F GLU A 266 ? UNP Q8Y8D7 ? ? 'cloning artifact' 266 3 1 2I2F HIS A 267 ? UNP Q8Y8D7 ? ? 'expression tag' 267 4 1 2I2F HIS A 268 ? UNP Q8Y8D7 ? ? 'expression tag' 268 5 1 2I2F HIS A 269 ? UNP Q8Y8D7 ? ? 'expression tag' 269 6 1 2I2F HIS A 270 ? UNP Q8Y8D7 ? ? 'expression tag' 270 7 1 2I2F HIS A 271 ? UNP Q8Y8D7 ? ? 'expression tag' 271 8 1 2I2F HIS A 272 ? UNP Q8Y8D7 ? ? 'expression tag' 272 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAD non-polymer . NICOTINAMIDE-ADENINE-DINUCLEOTIDE ? 'C21 H27 N7 O14 P2' 663.425 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2I2F _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.37 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.4 _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;0.3 M potassium chloride, 50 mM tri-sodium citrate dihydrate, 15-20% w/v polyethylene glycol 400, pH 5.4, VAPOR DIFFUSION, HANGING DROP ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-04-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-2' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.934 _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-2 # _reflns.entry_id 2I2F _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.9 _reflns.d_resolution_low 32.14 _reflns.number_all 22583 _reflns.number_obs 21902 _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs 0.071 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.9 _reflns.B_iso_Wilson_estimate 23.5 _reflns.pdbx_redundancy 6.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.9 _reflns_shell.d_res_low 2.0 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 94. _reflns_shell.Rmerge_I_obs 0.399 _reflns_shell.meanI_over_sigI_obs 4.1 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 5.2 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2I2F _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 32.140 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.850 _refine.ls_number_reflns_obs 21902 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all 0.206 _refine.ls_R_factor_R_work 0.205 _refine.ls_R_factor_R_free 0.243 _refine.ls_percent_reflns_R_free 3.000 _refine.ls_number_reflns_R_free 681 _refine.B_iso_mean 24.318 _refine.aniso_B[1][1] 0.620 _refine.aniso_B[2][2] 1.410 _refine.aniso_B[3][3] -2.030 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.944 _refine.correlation_coeff_Fo_to_Fc_free 0.925 _refine.pdbx_overall_ESU_R 0.162 _refine.pdbx_overall_ESU_R_Free 0.148 _refine.overall_SU_ML 0.099 _refine.overall_SU_B 6.706 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 22583 _refine.ls_R_factor_obs 0.206 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB ENTRY 2i29' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2051 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 55 _refine_hist.number_atoms_solvent 59 _refine_hist.number_atoms_total 2165 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 32.140 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2191 0.009 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2975 1.403 1.963 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 264 11.502 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 100 33.885 23.200 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 350 14.225 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13 10.040 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 323 0.113 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1654 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 918 0.198 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1433 0.307 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 95 0.303 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 42 0.143 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 13 0.136 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1360 0.424 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2100 0.663 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 964 0.891 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 873 1.227 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 89.740 _refine_ls_shell.number_reflns_R_work 1442 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.236 _refine_ls_shell.R_factor_R_free 0.339 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 45 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1487 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2I2F _struct.title 'Crystal structure of LmNADK1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2I2F _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'Crystal structure of LmNADK1 bound to a NAD analog, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 10 ? GLY A 25 ? ASP A 10 GLY A 25 1 ? 16 HELX_P HELX_P2 2 GLY A 44 ? TYR A 55 ? GLY A 44 TYR A 55 1 ? 12 HELX_P HELX_P3 3 ARG A 79 ? ALA A 81 ? ARG A 79 ALA A 81 5 ? 3 HELX_P HELX_P4 4 GLU A 82 ? GLY A 93 ? GLU A 82 GLY A 93 1 ? 12 HELX_P HELX_P5 5 PRO A 157 ? THR A 161 ? PRO A 157 THR A 161 5 ? 5 HELX_P HELX_P6 6 ALA A 162 ? LEU A 167 ? ALA A 162 LEU A 167 1 ? 6 HELX_P HELX_P7 7 PRO A 252 ? ILE A 262 ? PRO A 252 ILE A 262 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LYS 113 A . ? LYS 113 A LYS 114 A ? LYS 114 A 1 -12.63 2 GLY 130 A . ? GLY 130 A GLY 131 A ? GLY 131 A 1 5.97 3 ASN 213 A . ? ASN 213 A ASP 214 A ? ASP 214 A 1 28.45 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 30 ? TYR A 31 ? GLU A 30 TYR A 31 A 2 LYS A 2 ? SER A 7 ? LYS A 2 SER A 7 A 3 ILE A 38 ? GLY A 43 ? ILE A 38 GLY A 43 A 4 ALA A 63 ? HIS A 68 ? ALA A 63 HIS A 68 B 1 ALA A 116 ? ALA A 120 ? ALA A 116 ALA A 120 B 2 GLN A 96 ? TYR A 109 ? GLN A 96 TYR A 109 B 3 VAL A 231 ? ARG A 247 ? VAL A 231 ARG A 247 B 4 VAL A 207 ? PRO A 211 ? VAL A 207 PRO A 211 B 5 PHE A 133 ? ILE A 139 ? PHE A 133 ILE A 139 B 6 ILE A 142 ? GLY A 149 ? ILE A 142 GLY A 149 C 1 LEU A 199 ? PRO A 202 ? LEU A 199 PRO A 202 C 2 ALA A 178 ? MET A 184 ? ALA A 178 MET A 184 C 3 GLY A 151 ? SER A 155 ? GLY A 151 SER A 155 C 4 GLU A 123 ? SER A 128 ? GLU A 123 SER A 128 C 5 PHE A 217 ? VAL A 221 ? PHE A 217 VAL A 221 C 6 LEU A 224 ? HIS A 228 ? LEU A 224 HIS A 228 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 30 ? O GLU A 30 N TYR A 3 ? N TYR A 3 A 2 3 N THR A 6 ? N THR A 6 O ILE A 40 ? O ILE A 40 A 3 4 N SER A 41 ? N SER A 41 O ILE A 67 ? O ILE A 67 B 1 2 O ALA A 116 ? O ALA A 116 N VAL A 107 ? N VAL A 107 B 2 3 N GLN A 96 ? N GLN A 96 O ARG A 247 ? O ARG A 247 B 3 4 O TYR A 236 ? O TYR A 236 N VAL A 207 ? N VAL A 207 B 4 5 O SER A 208 ? O SER A 208 N VAL A 138 ? N VAL A 138 B 5 6 N VAL A 137 ? N VAL A 137 O GLU A 145 ? O GLU A 145 C 1 2 O PHE A 201 ? O PHE A 201 N MET A 179 ? N MET A 179 C 2 3 O THR A 182 ? O THR A 182 N CYS A 153 ? N CYS A 153 C 3 4 O MET A 154 ? O MET A 154 N SER A 124 ? N SER A 124 C 4 5 N LYS A 127 ? N LYS A 127 O GLN A 218 ? O GLN A 218 C 5 6 N PHE A 217 ? N PHE A 217 O HIS A 228 ? O HIS A 228 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PO4 273 ? 3 'BINDING SITE FOR RESIDUE PO4 A 273' AC2 Software A NAD 274 ? 16 'BINDING SITE FOR RESIDUE NAD A 274' AC3 Software A GOL 301 ? 4 'BINDING SITE FOR RESIDUE GOL A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ASN A 45 ? ASN A 45 . ? 1_555 ? 2 AC1 3 GLY A 46 ? GLY A 46 . ? 1_555 ? 3 AC1 3 NAD C . ? NAD A 274 . ? 1_555 ? 4 AC2 16 ASN A 45 ? ASN A 45 . ? 1_555 ? 5 AC2 16 PHE A 74 ? PHE A 74 . ? 1_555 ? 6 AC2 16 TYR A 75 ? TYR A 75 . ? 1_555 ? 7 AC2 16 ASN A 122 ? ASN A 122 . ? 1_555 ? 8 AC2 16 GLU A 123 ? GLU A 123 . ? 1_555 ? 9 AC2 16 PRO A 132 ? PRO A 132 . ? 4_555 ? 10 AC2 16 ASP A 150 ? ASP A 150 . ? 4_555 ? 11 AC2 16 THR A 161 ? THR A 161 . ? 1_555 ? 12 AC2 16 ALA A 162 ? ALA A 162 . ? 1_555 ? 13 AC2 16 TYR A 163 ? TYR A 163 . ? 1_555 ? 14 AC2 16 SER A 166 ? SER A 166 . ? 1_555 ? 15 AC2 16 ALA A 185 ? ALA A 185 . ? 4_555 ? 16 AC2 16 ILE A 187 ? ILE A 187 . ? 4_555 ? 17 AC2 16 TYR A 192 ? TYR A 192 . ? 4_555 ? 18 AC2 16 HIS A 223 ? HIS A 223 . ? 1_555 ? 19 AC2 16 PO4 B . ? PO4 A 273 . ? 1_555 ? 20 AC3 4 HIS A 173 ? HIS A 173 . ? 1_555 ? 21 AC3 4 HIS A 205 ? HIS A 205 . ? 3_655 ? 22 AC3 4 PRO A 252 ? PRO A 252 . ? 1_555 ? 23 AC3 4 PHE A 253 ? PHE A 253 . ? 1_555 ? # _atom_sites.entry_id 2I2F _atom_sites.fract_transf_matrix[1][1] 0.016018 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013096 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008389 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 MET 4 4 4 MET MET A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 MET 20 20 20 MET MET A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 PHE 24 24 24 PHE PHE A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 MET 29 29 29 MET MET A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 TYR 31 31 31 TYR TYR A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 PHE 52 52 52 PHE PHE A . n A 1 53 HIS 53 53 53 HIS HIS A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 TYR 55 55 55 TYR TYR A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 HIS 71 71 71 HIS HIS A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 TYR 75 75 75 TYR TYR A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 TRP 78 78 78 TRP TRP A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 TYR 95 95 95 TYR TYR A . n A 1 96 GLN 96 96 96 GLN GLN A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 TYR 100 100 100 TYR TYR A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 VAL 107 107 107 VAL VAL A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 TYR 109 109 109 TYR TYR A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 ILE 111 111 ? ? ? A . n A 1 112 GLY 112 112 ? ? ? A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 ASN 122 122 122 ASN ASN A . n A 1 123 GLU 123 123 123 GLU GLU A . n A 1 124 SER 124 124 124 SER SER A . n A 1 125 THR 125 125 125 THR THR A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 LYS 127 127 127 LYS LYS A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 PRO 132 132 132 PRO PRO A . n A 1 133 PHE 133 133 133 PHE PHE A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 VAL 135 135 135 VAL VAL A . n A 1 136 ASP 136 136 136 ASP ASP A . n A 1 137 VAL 137 137 137 VAL VAL A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 ASN 140 140 140 ASN ASN A . n A 1 141 ASP 141 141 141 ASP ASP A . n A 1 142 ILE 142 142 142 ILE ILE A . n A 1 143 HIS 143 143 143 HIS HIS A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 GLU 145 145 145 GLU GLU A . n A 1 146 ARG 146 146 146 ARG ARG A . n A 1 147 PHE 147 147 147 PHE PHE A . n A 1 148 ARG 148 148 148 ARG ARG A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 ASP 150 150 150 ASP ASP A . n A 1 151 GLY 151 151 151 GLY GLY A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 CYS 153 153 153 CYS CYS A . n A 1 154 MET 154 154 154 MET MET A . n A 1 155 SER 155 155 155 SER SER A . n A 1 156 THR 156 156 156 THR THR A . n A 1 157 PRO 157 157 157 PRO PRO A . n A 1 158 SER 158 158 158 SER SER A . n A 1 159 GLY 159 159 159 GLY GLY A . n A 1 160 THR 160 160 160 THR THR A . n A 1 161 THR 161 161 161 THR THR A . n A 1 162 ALA 162 162 162 ALA ALA A . n A 1 163 TYR 163 163 163 TYR TYR A . n A 1 164 ASN 164 164 164 ASN ASN A . n A 1 165 LYS 165 165 165 LYS LYS A . n A 1 166 SER 166 166 166 SER SER A . n A 1 167 LEU 167 167 167 LEU LEU A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 GLY 169 169 169 GLY GLY A . n A 1 170 ALA 170 170 170 ALA ALA A . n A 1 171 LEU 171 171 171 LEU LEU A . n A 1 172 MET 172 172 172 MET MET A . n A 1 173 HIS 173 173 173 HIS HIS A . n A 1 174 PRO 174 174 174 PRO PRO A . n A 1 175 SER 175 175 175 SER SER A . n A 1 176 ILE 176 176 176 ILE ILE A . n A 1 177 GLU 177 177 177 GLU GLU A . n A 1 178 ALA 178 178 178 ALA ALA A . n A 1 179 MET 179 179 179 MET MET A . n A 1 180 GLN 180 180 180 GLN GLN A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 THR 182 182 182 THR THR A . n A 1 183 GLU 183 183 183 GLU GLU A . n A 1 184 MET 184 184 184 MET MET A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 SER 186 186 186 SER SER A . n A 1 187 ILE 187 187 187 ILE ILE A . n A 1 188 ASN 188 188 188 ASN ASN A . n A 1 189 ASN 189 189 189 ASN ASN A . n A 1 190 ARG 190 190 190 ARG ARG A . n A 1 191 VAL 191 191 191 VAL VAL A . n A 1 192 TYR 192 192 192 TYR TYR A . n A 1 193 ARG 193 193 193 ARG ARG A . n A 1 194 THR 194 194 194 THR THR A . n A 1 195 ILE 195 195 195 ILE ILE A . n A 1 196 GLY 196 196 196 GLY GLY A . n A 1 197 SER 197 197 197 SER SER A . n A 1 198 PRO 198 198 198 PRO PRO A . n A 1 199 LEU 199 199 199 LEU LEU A . n A 1 200 VAL 200 200 200 VAL VAL A . n A 1 201 PHE 201 201 201 PHE PHE A . n A 1 202 PRO 202 202 202 PRO PRO A . n A 1 203 LYS 203 203 203 LYS LYS A . n A 1 204 HIS 204 204 204 HIS HIS A . n A 1 205 HIS 205 205 205 HIS HIS A . n A 1 206 VAL 206 206 206 VAL VAL A . n A 1 207 VAL 207 207 207 VAL VAL A . n A 1 208 SER 208 208 208 SER SER A . n A 1 209 LEU 209 209 209 LEU LEU A . n A 1 210 GLN 210 210 210 GLN GLN A . n A 1 211 PRO 211 211 211 PRO PRO A . n A 1 212 VAL 212 212 212 VAL VAL A . n A 1 213 ASN 213 213 213 ASN ASN A . n A 1 214 ASP 214 214 214 ASP ASP A . n A 1 215 LYS 215 215 215 LYS LYS A . n A 1 216 ASP 216 216 216 ASP ASP A . n A 1 217 PHE 217 217 217 PHE PHE A . n A 1 218 GLN 218 218 218 GLN GLN A . n A 1 219 ILE 219 219 219 ILE ILE A . n A 1 220 SER 220 220 220 SER SER A . n A 1 221 VAL 221 221 221 VAL VAL A . n A 1 222 ASP 222 222 222 ASP ASP A . n A 1 223 HIS 223 223 223 HIS HIS A . n A 1 224 LEU 224 224 224 LEU LEU A . n A 1 225 SER 225 225 225 SER SER A . n A 1 226 ILE 226 226 226 ILE ILE A . n A 1 227 LEU 227 227 227 LEU LEU A . n A 1 228 HIS 228 228 228 HIS HIS A . n A 1 229 ARG 229 229 229 ARG ARG A . n A 1 230 ASP 230 230 230 ASP ASP A . n A 1 231 VAL 231 231 231 VAL VAL A . n A 1 232 GLN 232 232 232 GLN GLN A . n A 1 233 GLU 233 233 233 GLU GLU A . n A 1 234 ILE 234 234 234 ILE ILE A . n A 1 235 ARG 235 235 235 ARG ARG A . n A 1 236 TYR 236 236 236 TYR TYR A . n A 1 237 GLU 237 237 237 GLU GLU A . n A 1 238 VAL 238 238 238 VAL VAL A . n A 1 239 SER 239 239 239 SER SER A . n A 1 240 ALA 240 240 240 ALA ALA A . n A 1 241 LYS 241 241 241 LYS LYS A . n A 1 242 LYS 242 242 242 LYS LYS A . n A 1 243 ILE 243 243 243 ILE ILE A . n A 1 244 HIS 244 244 244 HIS HIS A . n A 1 245 PHE 245 245 245 PHE PHE A . n A 1 246 ALA 246 246 246 ALA ALA A . n A 1 247 ARG 247 247 247 ARG ARG A . n A 1 248 PHE 248 248 248 PHE PHE A . n A 1 249 ARG 249 249 249 ARG ARG A . n A 1 250 SER 250 250 250 SER SER A . n A 1 251 PHE 251 251 251 PHE PHE A . n A 1 252 PRO 252 252 252 PRO PRO A . n A 1 253 PHE 253 253 253 PHE PHE A . n A 1 254 TRP 254 254 254 TRP TRP A . n A 1 255 ARG 255 255 255 ARG ARG A . n A 1 256 ARG 256 256 256 ARG ARG A . n A 1 257 VAL 257 257 257 VAL VAL A . n A 1 258 HIS 258 258 258 HIS HIS A . n A 1 259 ASP 259 259 259 ASP ASP A . n A 1 260 SER 260 260 260 SER SER A . n A 1 261 PHE 261 261 261 PHE PHE A . n A 1 262 ILE 262 262 262 ILE ILE A . n A 1 263 GLU 263 263 263 GLU GLU A . n A 1 264 ASP 264 264 264 ASP ASP A . n A 1 265 LEU 265 265 ? ? ? A . n A 1 266 GLU 266 266 ? ? ? A . n A 1 267 HIS 267 267 ? ? ? A . n A 1 268 HIS 268 268 ? ? ? A . n A 1 269 HIS 269 269 ? ? ? A . n A 1 270 HIS 270 270 ? ? ? A . n A 1 271 HIS 271 271 ? ? ? A . n A 1 272 HIS 272 272 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 273 101 PO4 PO4 A . C 3 NAD 1 274 201 NAD NAD A . D 4 GOL 1 301 301 GOL GOL A . E 5 HOH 1 302 1 HOH HOH A . E 5 HOH 2 303 2 HOH HOH A . E 5 HOH 3 304 3 HOH HOH A . E 5 HOH 4 305 4 HOH HOH A . E 5 HOH 5 306 5 HOH HOH A . E 5 HOH 6 307 6 HOH HOH A . E 5 HOH 7 308 7 HOH HOH A . E 5 HOH 8 309 8 HOH HOH A . E 5 HOH 9 310 9 HOH HOH A . E 5 HOH 10 311 10 HOH HOH A . E 5 HOH 11 312 11 HOH HOH A . E 5 HOH 12 313 12 HOH HOH A . E 5 HOH 13 314 13 HOH HOH A . E 5 HOH 14 315 14 HOH HOH A . E 5 HOH 15 316 16 HOH HOH A . E 5 HOH 16 317 17 HOH HOH A . E 5 HOH 17 318 18 HOH HOH A . E 5 HOH 18 319 19 HOH HOH A . E 5 HOH 19 320 20 HOH HOH A . E 5 HOH 20 321 21 HOH HOH A . E 5 HOH 21 322 22 HOH HOH A . E 5 HOH 22 323 23 HOH HOH A . E 5 HOH 23 324 24 HOH HOH A . E 5 HOH 24 325 25 HOH HOH A . E 5 HOH 25 326 26 HOH HOH A . E 5 HOH 26 327 27 HOH HOH A . E 5 HOH 27 328 28 HOH HOH A . E 5 HOH 28 329 29 HOH HOH A . E 5 HOH 29 330 30 HOH HOH A . E 5 HOH 30 331 31 HOH HOH A . E 5 HOH 31 332 32 HOH HOH A . E 5 HOH 32 333 33 HOH HOH A . E 5 HOH 33 334 34 HOH HOH A . E 5 HOH 34 335 35 HOH HOH A . E 5 HOH 35 336 36 HOH HOH A . E 5 HOH 36 337 37 HOH HOH A . E 5 HOH 37 338 38 HOH HOH A . E 5 HOH 38 339 39 HOH HOH A . E 5 HOH 39 340 40 HOH HOH A . E 5 HOH 40 341 41 HOH HOH A . E 5 HOH 41 342 42 HOH HOH A . E 5 HOH 42 343 43 HOH HOH A . E 5 HOH 43 344 44 HOH HOH A . E 5 HOH 44 345 45 HOH HOH A . E 5 HOH 45 346 46 HOH HOH A . E 5 HOH 46 347 47 HOH HOH A . E 5 HOH 47 348 48 HOH HOH A . E 5 HOH 48 349 49 HOH HOH A . E 5 HOH 49 350 50 HOH HOH A . E 5 HOH 50 351 51 HOH HOH A . E 5 HOH 51 352 52 HOH HOH A . E 5 HOH 52 353 53 HOH HOH A . E 5 HOH 53 354 54 HOH HOH A . E 5 HOH 54 355 55 HOH HOH A . E 5 HOH 55 356 56 HOH HOH A . E 5 HOH 56 357 57 HOH HOH A . E 5 HOH 57 358 58 HOH HOH A . E 5 HOH 58 359 59 HOH HOH A . E 5 HOH 59 360 60 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 14660 ? 1 MORE -95 ? 1 'SSA (A^2)' 39300 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 62.4280000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 62.4280000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 336 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-07 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-02-14 4 'Structure model' 1 3 2021-10-20 5 'Structure model' 1 4 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Refinement description' 4 2 'Structure model' 'Version format compliance' 5 3 'Structure model' 'Experimental preparation' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' exptl_crystal_grow 2 4 'Structure model' database_2 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_exptl_crystal_grow.pdbx_details' 2 3 'Structure model' '_exptl_crystal_grow.temp' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_struct_ref_seq_dif.details' 6 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 10.9489 23.4671 22.1072 -0.0092 -0.0169 -0.0394 0.0523 0.0296 -0.0406 2.9895 0.5394 6.0204 0.1698 -0.8090 1.2655 -0.0560 0.0057 0.0503 -0.1140 -0.0465 0.0179 0.0770 -0.0312 -0.1458 'X-RAY DIFFRACTION' 2 ? refined 21.6392 26.5157 25.7959 0.0900 0.1284 0.0200 0.0616 0.0250 -0.0796 3.2957 0.9804 5.0854 0.8330 -1.3748 1.5163 -0.1353 0.1946 -0.0592 -0.5706 0.2817 -0.1273 0.0580 -0.1682 0.3245 'X-RAY DIFFRACTION' 3 ? refined 31.1187 13.8446 16.6965 -0.0789 -0.0282 -0.1643 -0.0249 0.0081 -0.0487 4.5683 12.6647 5.7427 1.9574 1.7403 0.4844 0.1535 -0.1854 0.0319 -0.3702 0.1914 0.1366 0.4544 0.1711 -0.3191 'X-RAY DIFFRACTION' 4 ? refined 17.3259 13.4018 -4.4945 -0.1260 -0.0764 -0.0968 0.0201 -0.0051 0.0077 1.4245 1.6859 1.8949 -0.1540 -0.2080 0.2925 0.0263 -0.0319 0.0056 0.0848 0.0749 0.2399 -0.0920 -0.0665 -0.2648 'X-RAY DIFFRACTION' 5 ? refined 17.0406 8.5001 11.0006 0.1579 0.2004 0.1266 0.0201 0.0030 0.0273 0.8427 11.9080 0.1709 -3.1679 -0.3795 1.4264 0.5054 -0.4784 -0.0270 -0.7622 -0.5111 -0.0007 1.9144 0.7165 -0.3834 'X-RAY DIFFRACTION' 6 ? refined 31.6933 25.0384 13.4025 0.0256 0.0455 0.0368 0.0590 0.0199 -0.0729 63.7448 230.5319 91.7786 100.7448 35.0268 64.2605 1.2951 0.8677 -2.1628 0.8589 1.7083 0.8691 0.4562 -2.2033 -1.4701 'X-RAY DIFFRACTION' 7 ? refined 13.5978 8.5734 17.2022 0.0543 0.0758 0.0685 0.0034 -0.0128 -0.0060 341.4805 228.9818 303.7528 8.4588 1.8426 -8.7711 0.1075 1.3663 -1.4738 0.4959 -1.1545 -0.9932 -0.8633 -0.1157 -0.6408 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 76 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 77 A 97 ? . . . . ? 'X-RAY DIFFRACTION' 3 2 A 245 A 251 ? . . . . ? 'X-RAY DIFFRACTION' 4 3 A 252 A 263 ? . . . . ? 'X-RAY DIFFRACTION' 5 4 A 98 A 244 ? . . . . ? 'X-RAY DIFFRACTION' 6 5 A 274 A 274 ? . . . . ? 'X-RAY DIFFRACTION' 7 6 A 301 A 301 ? . . . . ? 'X-RAY DIFFRACTION' 8 7 A 273 A 273 ? . . . . ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 3 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 4 SCALA . ? ? ? ? 'data scaling' ? ? ? 5 MOLREP . ? ? ? ? phasing ? ? ? 6 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 10 ? ? CG A ASP 10 ? ? OD2 A ASP 10 ? ? 123.92 118.30 5.62 0.90 N 2 1 N A ASP 77 ? ? CA A ASP 77 ? ? C A ASP 77 ? ? 135.53 111.00 24.53 2.70 N 3 1 CB A ASP 214 ? ? CG A ASP 214 ? ? OD2 A ASP 214 ? ? 123.73 118.30 5.43 0.90 N 4 1 CB A ASP 222 ? ? CG A ASP 222 ? ? OD2 A ASP 222 ? ? 123.76 118.30 5.46 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 29 ? ? 128.49 70.85 2 1 LEU A 72 ? ? 159.26 80.08 3 1 ASN A 122 ? ? -100.30 -66.65 4 1 ALA A 162 ? ? -104.88 -127.31 5 1 HIS A 204 ? ? 80.07 -12.60 6 1 ASN A 213 ? ? -89.78 -100.68 7 1 ASP A 214 ? ? 89.79 79.23 8 1 ASP A 222 ? ? 53.64 -124.04 9 1 PHE A 248 ? ? 168.56 -48.16 10 1 ILE A 262 ? ? -101.06 -66.57 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 ASP A 28 ? ? MET A 29 ? ? -61.56 2 1 HIS A 71 ? ? LEU A 72 ? ? -58.33 3 1 ALA A 76 ? ? ASP A 77 ? ? 111.67 4 1 ARG A 247 ? ? PHE A 248 ? ? -74.39 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 85 ? CG ? A LYS 85 CG 2 1 Y 1 A LYS 85 ? CD ? A LYS 85 CD 3 1 Y 1 A LYS 85 ? CE ? A LYS 85 CE 4 1 Y 1 A LYS 85 ? NZ ? A LYS 85 NZ 5 1 Y 1 A LYS 88 ? CG ? A LYS 88 CG 6 1 Y 1 A LYS 88 ? CD ? A LYS 88 CD 7 1 Y 1 A LYS 88 ? CE ? A LYS 88 CE 8 1 Y 1 A LYS 88 ? NZ ? A LYS 88 NZ 9 1 Y 1 A ALA 91 ? CB ? A ALA 91 CB 10 1 Y 1 A LYS 92 ? CG ? A LYS 92 CG 11 1 Y 1 A LYS 92 ? CD ? A LYS 92 CD 12 1 Y 1 A LYS 92 ? CE ? A LYS 92 CE 13 1 Y 1 A LYS 92 ? NZ ? A LYS 92 NZ 14 1 Y 1 A GLN 96 ? CG ? A GLN 96 CG 15 1 Y 1 A GLN 96 ? CD ? A GLN 96 CD 16 1 Y 1 A GLN 96 ? OE1 ? A GLN 96 OE1 17 1 Y 1 A GLN 96 ? NE2 ? A GLN 96 NE2 18 1 Y 1 A LYS 113 ? CG ? A LYS 113 CG 19 1 Y 1 A LYS 113 ? CD ? A LYS 113 CD 20 1 Y 1 A LYS 113 ? CE ? A LYS 113 CE 21 1 Y 1 A LYS 113 ? NZ ? A LYS 113 NZ 22 1 Y 1 A LYS 114 ? CG ? A LYS 114 CG 23 1 Y 1 A LYS 114 ? CD ? A LYS 114 CD 24 1 Y 1 A LYS 114 ? CE ? A LYS 114 CE 25 1 Y 1 A LYS 114 ? NZ ? A LYS 114 NZ 26 1 Y 1 A ARG 193 ? CG ? A ARG 193 CG 27 1 Y 1 A ARG 193 ? CD ? A ARG 193 CD 28 1 Y 1 A ARG 193 ? NE ? A ARG 193 NE 29 1 Y 1 A ARG 193 ? CZ ? A ARG 193 CZ 30 1 Y 1 A ARG 193 ? NH1 ? A ARG 193 NH1 31 1 Y 1 A ARG 193 ? NH2 ? A ARG 193 NH2 32 1 Y 1 A GLN 232 ? CG ? A GLN 232 CG 33 1 Y 1 A GLN 232 ? CD ? A GLN 232 CD 34 1 Y 1 A GLN 232 ? OE1 ? A GLN 232 OE1 35 1 Y 1 A GLN 232 ? NE2 ? A GLN 232 NE2 36 1 Y 1 A ARG 249 ? CG ? A ARG 249 CG 37 1 Y 1 A ARG 249 ? CD ? A ARG 249 CD 38 1 Y 1 A ARG 249 ? NE ? A ARG 249 NE 39 1 Y 1 A ARG 249 ? CZ ? A ARG 249 CZ 40 1 Y 1 A ARG 249 ? NH1 ? A ARG 249 NH1 41 1 Y 1 A ARG 249 ? NH2 ? A ARG 249 NH2 42 1 Y 1 A GLU 263 ? CG ? A GLU 263 CG 43 1 Y 1 A GLU 263 ? CD ? A GLU 263 CD 44 1 Y 1 A GLU 263 ? OE1 ? A GLU 263 OE1 45 1 Y 1 A GLU 263 ? OE2 ? A GLU 263 OE2 46 1 Y 1 A ASP 264 ? CG ? A ASP 264 CG 47 1 Y 1 A ASP 264 ? OD1 ? A ASP 264 OD1 48 1 Y 1 A ASP 264 ? OD2 ? A ASP 264 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ILE 111 ? A ILE 111 2 1 Y 1 A GLY 112 ? A GLY 112 3 1 Y 1 A LEU 265 ? A LEU 265 4 1 Y 1 A GLU 266 ? A GLU 266 5 1 Y 1 A HIS 267 ? A HIS 267 6 1 Y 1 A HIS 268 ? A HIS 268 7 1 Y 1 A HIS 269 ? A HIS 269 8 1 Y 1 A HIS 270 ? A HIS 270 9 1 Y 1 A HIS 271 ? A HIS 271 10 1 Y 1 A HIS 272 ? A HIS 272 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 NAD PA P N S 264 NAD O1A O N N 265 NAD O2A O N N 266 NAD O5B O N N 267 NAD C5B C N N 268 NAD C4B C N R 269 NAD O4B O N N 270 NAD C3B C N S 271 NAD O3B O N N 272 NAD C2B C N R 273 NAD O2B O N N 274 NAD C1B C N R 275 NAD N9A N Y N 276 NAD C8A C Y N 277 NAD N7A N Y N 278 NAD C5A C Y N 279 NAD C6A C Y N 280 NAD N6A N N N 281 NAD N1A N Y N 282 NAD C2A C Y N 283 NAD N3A N Y N 284 NAD C4A C Y N 285 NAD O3 O N N 286 NAD PN P N N 287 NAD O1N O N N 288 NAD O2N O N N 289 NAD O5D O N N 290 NAD C5D C N N 291 NAD C4D C N R 292 NAD O4D O N N 293 NAD C3D C N S 294 NAD O3D O N N 295 NAD C2D C N R 296 NAD O2D O N N 297 NAD C1D C N R 298 NAD N1N N Y N 299 NAD C2N C Y N 300 NAD C3N C Y N 301 NAD C7N C N N 302 NAD O7N O N N 303 NAD N7N N N N 304 NAD C4N C Y N 305 NAD C5N C Y N 306 NAD C6N C Y N 307 NAD HOA2 H N N 308 NAD H51A H N N 309 NAD H52A H N N 310 NAD H4B H N N 311 NAD H3B H N N 312 NAD HO3A H N N 313 NAD H2B H N N 314 NAD HO2A H N N 315 NAD H1B H N N 316 NAD H8A H N N 317 NAD H61A H N N 318 NAD H62A H N N 319 NAD H2A H N N 320 NAD H51N H N N 321 NAD H52N H N N 322 NAD H4D H N N 323 NAD H3D H N N 324 NAD HO3N H N N 325 NAD H2D H N N 326 NAD HO2N H N N 327 NAD H1D H N N 328 NAD H2N H N N 329 NAD H71N H N N 330 NAD H72N H N N 331 NAD H4N H N N 332 NAD H5N H N N 333 NAD H6N H N N 334 PHE N N N N 335 PHE CA C N S 336 PHE C C N N 337 PHE O O N N 338 PHE CB C N N 339 PHE CG C Y N 340 PHE CD1 C Y N 341 PHE CD2 C Y N 342 PHE CE1 C Y N 343 PHE CE2 C Y N 344 PHE CZ C Y N 345 PHE OXT O N N 346 PHE H H N N 347 PHE H2 H N N 348 PHE HA H N N 349 PHE HB2 H N N 350 PHE HB3 H N N 351 PHE HD1 H N N 352 PHE HD2 H N N 353 PHE HE1 H N N 354 PHE HE2 H N N 355 PHE HZ H N N 356 PHE HXT H N N 357 PO4 P P N N 358 PO4 O1 O N N 359 PO4 O2 O N N 360 PO4 O3 O N N 361 PO4 O4 O N N 362 PRO N N N N 363 PRO CA C N S 364 PRO C C N N 365 PRO O O N N 366 PRO CB C N N 367 PRO CG C N N 368 PRO CD C N N 369 PRO OXT O N N 370 PRO H H N N 371 PRO HA H N N 372 PRO HB2 H N N 373 PRO HB3 H N N 374 PRO HG2 H N N 375 PRO HG3 H N N 376 PRO HD2 H N N 377 PRO HD3 H N N 378 PRO HXT H N N 379 SER N N N N 380 SER CA C N S 381 SER C C N N 382 SER O O N N 383 SER CB C N N 384 SER OG O N N 385 SER OXT O N N 386 SER H H N N 387 SER H2 H N N 388 SER HA H N N 389 SER HB2 H N N 390 SER HB3 H N N 391 SER HG H N N 392 SER HXT H N N 393 THR N N N N 394 THR CA C N S 395 THR C C N N 396 THR O O N N 397 THR CB C N R 398 THR OG1 O N N 399 THR CG2 C N N 400 THR OXT O N N 401 THR H H N N 402 THR H2 H N N 403 THR HA H N N 404 THR HB H N N 405 THR HG1 H N N 406 THR HG21 H N N 407 THR HG22 H N N 408 THR HG23 H N N 409 THR HXT H N N 410 TRP N N N N 411 TRP CA C N S 412 TRP C C N N 413 TRP O O N N 414 TRP CB C N N 415 TRP CG C Y N 416 TRP CD1 C Y N 417 TRP CD2 C Y N 418 TRP NE1 N Y N 419 TRP CE2 C Y N 420 TRP CE3 C Y N 421 TRP CZ2 C Y N 422 TRP CZ3 C Y N 423 TRP CH2 C Y N 424 TRP OXT O N N 425 TRP H H N N 426 TRP H2 H N N 427 TRP HA H N N 428 TRP HB2 H N N 429 TRP HB3 H N N 430 TRP HD1 H N N 431 TRP HE1 H N N 432 TRP HE3 H N N 433 TRP HZ2 H N N 434 TRP HZ3 H N N 435 TRP HH2 H N N 436 TRP HXT H N N 437 TYR N N N N 438 TYR CA C N S 439 TYR C C N N 440 TYR O O N N 441 TYR CB C N N 442 TYR CG C Y N 443 TYR CD1 C Y N 444 TYR CD2 C Y N 445 TYR CE1 C Y N 446 TYR CE2 C Y N 447 TYR CZ C Y N 448 TYR OH O N N 449 TYR OXT O N N 450 TYR H H N N 451 TYR H2 H N N 452 TYR HA H N N 453 TYR HB2 H N N 454 TYR HB3 H N N 455 TYR HD1 H N N 456 TYR HD2 H N N 457 TYR HE1 H N N 458 TYR HE2 H N N 459 TYR HH H N N 460 TYR HXT H N N 461 VAL N N N N 462 VAL CA C N S 463 VAL C C N N 464 VAL O O N N 465 VAL CB C N N 466 VAL CG1 C N N 467 VAL CG2 C N N 468 VAL OXT O N N 469 VAL H H N N 470 VAL H2 H N N 471 VAL HA H N N 472 VAL HB H N N 473 VAL HG11 H N N 474 VAL HG12 H N N 475 VAL HG13 H N N 476 VAL HG21 H N N 477 VAL HG22 H N N 478 VAL HG23 H N N 479 VAL HXT H N N 480 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 NAD PA O1A doub N N 250 NAD PA O2A sing N N 251 NAD PA O5B sing N N 252 NAD PA O3 sing N N 253 NAD O2A HOA2 sing N N 254 NAD O5B C5B sing N N 255 NAD C5B C4B sing N N 256 NAD C5B H51A sing N N 257 NAD C5B H52A sing N N 258 NAD C4B O4B sing N N 259 NAD C4B C3B sing N N 260 NAD C4B H4B sing N N 261 NAD O4B C1B sing N N 262 NAD C3B O3B sing N N 263 NAD C3B C2B sing N N 264 NAD C3B H3B sing N N 265 NAD O3B HO3A sing N N 266 NAD C2B O2B sing N N 267 NAD C2B C1B sing N N 268 NAD C2B H2B sing N N 269 NAD O2B HO2A sing N N 270 NAD C1B N9A sing N N 271 NAD C1B H1B sing N N 272 NAD N9A C8A sing Y N 273 NAD N9A C4A sing Y N 274 NAD C8A N7A doub Y N 275 NAD C8A H8A sing N N 276 NAD N7A C5A sing Y N 277 NAD C5A C6A sing Y N 278 NAD C5A C4A doub Y N 279 NAD C6A N6A sing N N 280 NAD C6A N1A doub Y N 281 NAD N6A H61A sing N N 282 NAD N6A H62A sing N N 283 NAD N1A C2A sing Y N 284 NAD C2A N3A doub Y N 285 NAD C2A H2A sing N N 286 NAD N3A C4A sing Y N 287 NAD O3 PN sing N N 288 NAD PN O1N doub N N 289 NAD PN O2N sing N N 290 NAD PN O5D sing N N 291 NAD O5D C5D sing N N 292 NAD C5D C4D sing N N 293 NAD C5D H51N sing N N 294 NAD C5D H52N sing N N 295 NAD C4D O4D sing N N 296 NAD C4D C3D sing N N 297 NAD C4D H4D sing N N 298 NAD O4D C1D sing N N 299 NAD C3D O3D sing N N 300 NAD C3D C2D sing N N 301 NAD C3D H3D sing N N 302 NAD O3D HO3N sing N N 303 NAD C2D O2D sing N N 304 NAD C2D C1D sing N N 305 NAD C2D H2D sing N N 306 NAD O2D HO2N sing N N 307 NAD C1D N1N sing N N 308 NAD C1D H1D sing N N 309 NAD N1N C2N sing Y N 310 NAD N1N C6N doub Y N 311 NAD C2N C3N doub Y N 312 NAD C2N H2N sing N N 313 NAD C3N C7N sing N N 314 NAD C3N C4N sing Y N 315 NAD C7N O7N doub N N 316 NAD C7N N7N sing N N 317 NAD N7N H71N sing N N 318 NAD N7N H72N sing N N 319 NAD C4N C5N doub Y N 320 NAD C4N H4N sing N N 321 NAD C5N C6N sing Y N 322 NAD C5N H5N sing N N 323 NAD C6N H6N sing N N 324 PHE N CA sing N N 325 PHE N H sing N N 326 PHE N H2 sing N N 327 PHE CA C sing N N 328 PHE CA CB sing N N 329 PHE CA HA sing N N 330 PHE C O doub N N 331 PHE C OXT sing N N 332 PHE CB CG sing N N 333 PHE CB HB2 sing N N 334 PHE CB HB3 sing N N 335 PHE CG CD1 doub Y N 336 PHE CG CD2 sing Y N 337 PHE CD1 CE1 sing Y N 338 PHE CD1 HD1 sing N N 339 PHE CD2 CE2 doub Y N 340 PHE CD2 HD2 sing N N 341 PHE CE1 CZ doub Y N 342 PHE CE1 HE1 sing N N 343 PHE CE2 CZ sing Y N 344 PHE CE2 HE2 sing N N 345 PHE CZ HZ sing N N 346 PHE OXT HXT sing N N 347 PO4 P O1 doub N N 348 PO4 P O2 sing N N 349 PO4 P O3 sing N N 350 PO4 P O4 sing N N 351 PRO N CA sing N N 352 PRO N CD sing N N 353 PRO N H sing N N 354 PRO CA C sing N N 355 PRO CA CB sing N N 356 PRO CA HA sing N N 357 PRO C O doub N N 358 PRO C OXT sing N N 359 PRO CB CG sing N N 360 PRO CB HB2 sing N N 361 PRO CB HB3 sing N N 362 PRO CG CD sing N N 363 PRO CG HG2 sing N N 364 PRO CG HG3 sing N N 365 PRO CD HD2 sing N N 366 PRO CD HD3 sing N N 367 PRO OXT HXT sing N N 368 SER N CA sing N N 369 SER N H sing N N 370 SER N H2 sing N N 371 SER CA C sing N N 372 SER CA CB sing N N 373 SER CA HA sing N N 374 SER C O doub N N 375 SER C OXT sing N N 376 SER CB OG sing N N 377 SER CB HB2 sing N N 378 SER CB HB3 sing N N 379 SER OG HG sing N N 380 SER OXT HXT sing N N 381 THR N CA sing N N 382 THR N H sing N N 383 THR N H2 sing N N 384 THR CA C sing N N 385 THR CA CB sing N N 386 THR CA HA sing N N 387 THR C O doub N N 388 THR C OXT sing N N 389 THR CB OG1 sing N N 390 THR CB CG2 sing N N 391 THR CB HB sing N N 392 THR OG1 HG1 sing N N 393 THR CG2 HG21 sing N N 394 THR CG2 HG22 sing N N 395 THR CG2 HG23 sing N N 396 THR OXT HXT sing N N 397 TRP N CA sing N N 398 TRP N H sing N N 399 TRP N H2 sing N N 400 TRP CA C sing N N 401 TRP CA CB sing N N 402 TRP CA HA sing N N 403 TRP C O doub N N 404 TRP C OXT sing N N 405 TRP CB CG sing N N 406 TRP CB HB2 sing N N 407 TRP CB HB3 sing N N 408 TRP CG CD1 doub Y N 409 TRP CG CD2 sing Y N 410 TRP CD1 NE1 sing Y N 411 TRP CD1 HD1 sing N N 412 TRP CD2 CE2 doub Y N 413 TRP CD2 CE3 sing Y N 414 TRP NE1 CE2 sing Y N 415 TRP NE1 HE1 sing N N 416 TRP CE2 CZ2 sing Y N 417 TRP CE3 CZ3 doub Y N 418 TRP CE3 HE3 sing N N 419 TRP CZ2 CH2 doub Y N 420 TRP CZ2 HZ2 sing N N 421 TRP CZ3 CH2 sing Y N 422 TRP CZ3 HZ3 sing N N 423 TRP CH2 HH2 sing N N 424 TRP OXT HXT sing N N 425 TYR N CA sing N N 426 TYR N H sing N N 427 TYR N H2 sing N N 428 TYR CA C sing N N 429 TYR CA CB sing N N 430 TYR CA HA sing N N 431 TYR C O doub N N 432 TYR C OXT sing N N 433 TYR CB CG sing N N 434 TYR CB HB2 sing N N 435 TYR CB HB3 sing N N 436 TYR CG CD1 doub Y N 437 TYR CG CD2 sing Y N 438 TYR CD1 CE1 sing Y N 439 TYR CD1 HD1 sing N N 440 TYR CD2 CE2 doub Y N 441 TYR CD2 HD2 sing N N 442 TYR CE1 CZ doub Y N 443 TYR CE1 HE1 sing N N 444 TYR CE2 CZ sing Y N 445 TYR CE2 HE2 sing N N 446 TYR CZ OH sing N N 447 TYR OH HH sing N N 448 TYR OXT HXT sing N N 449 VAL N CA sing N N 450 VAL N H sing N N 451 VAL N H2 sing N N 452 VAL CA C sing N N 453 VAL CA CB sing N N 454 VAL CA HA sing N N 455 VAL C O doub N N 456 VAL C OXT sing N N 457 VAL CB CG1 sing N N 458 VAL CB CG2 sing N N 459 VAL CB HB sing N N 460 VAL CG1 HG11 sing N N 461 VAL CG1 HG12 sing N N 462 VAL CG1 HG13 sing N N 463 VAL CG2 HG21 sing N N 464 VAL CG2 HG22 sing N N 465 VAL CG2 HG23 sing N N 466 VAL OXT HXT sing N N 467 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 NICOTINAMIDE-ADENINE-DINUCLEOTIDE NAD 4 GLYCEROL GOL 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2I29 _pdbx_initial_refinement_model.details 'PDB ENTRY 2i29' #