HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-AUG-06 2I5H TITLE CRYSTAL STRUCTURE OF AF1531 FROM ARCHAEOGLOBUS FULGIDUS, PFAM DUF655 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN AF1531; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYPOTHETICAL PROTEIN AF1531, PFAM:DUF655, PSI-2, 10225B, STRUCTURAL KEYWDS 2 GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER KEYWDS 3 FOR STRUCTURAL GENOMICS, NYSGXRC, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR S.ESWARAMOORTHY,S.K.BURLEY,S.SWAMINATHAN,NEW YORK SGX RESEARCH CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 4 21-FEB-24 2I5H 1 REMARK REVDAT 3 03-FEB-21 2I5H 1 AUTHOR JRNL SEQADV REVDAT 2 24-FEB-09 2I5H 1 VERSN REVDAT 1 05-SEP-06 2I5H 0 JRNL AUTH S.ESWARAMOORTHY,S.K.BURLEY,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN AF1531 FROM JRNL TITL 2 ARCHAEOGLOBUS FULGIDUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 22800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 892 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1457 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 132 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.47800 REMARK 3 B22 (A**2) : 0.71400 REMARK 3 B33 (A**2) : 1.76400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.47100 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.122 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES LISTED IN REMARK 465 AND ATOMS REMARK 3 LISTED IN REMARK 470 WERE NOT MODELED DUE TO LACK OF ELECTRON REMARK 3 DENSITY. REMARK 4 REMARK 4 2I5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000039161. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-06; 12-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X12C; X12C REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791; 1.0 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : SI (111); SI (111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210; ADSC QUANTUM REMARK 200 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23465 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 31.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.31900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE & SHARP, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG MME 5000, 0.1M MES, 0.2M REMARK 280 AMMONIUM SULFATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 38.36500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.74500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 38.36500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.74500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 LEU A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 3 REMARK 465 PRO A 4 REMARK 465 LYS A 5 REMARK 465 VAL A 6 REMARK 465 GLU A 7 REMARK 465 ARG A 8 REMARK 465 SER A 9 REMARK 465 GLU A 10 REMARK 465 GLY A 11 REMARK 465 LYS A 12 REMARK 465 GLU A 13 REMARK 465 LYS A 14 REMARK 465 LEU A 15 REMARK 465 LYS A 121 REMARK 465 ALA A 122 REMARK 465 GLU A 196 REMARK 465 GLY A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 148 CG CD OE1 OE2 REMARK 470 GLU A 149 CG CD OE1 OE2 REMARK 470 ARG A 153 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 PHE A 158 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 163 CG CD OE1 NE2 REMARK 470 VAL A 165 CG1 CG2 REMARK 470 LYS A 166 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 67 -6.81 85.26 REMARK 500 TYR A 81 -77.62 -93.69 REMARK 500 ASP A 111 47.20 -147.16 REMARK 500 SER A 124 -173.60 -55.79 REMARK 500 THR A 126 -79.47 -103.96 REMARK 500 THR A 127 112.25 170.26 REMARK 500 LYS A 152 -76.58 -41.24 REMARK 500 SER A 157 -174.54 178.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-10225B RELATED DB: TARGETDB DBREF 2I5H A 2 195 UNP O28741 O28741_ARCFU 2 195 SEQADV 2I5H MET A -1 UNP O28741 CLONING ARTIFACT SEQADV 2I5H SER A 0 UNP O28741 CLONING ARTIFACT SEQADV 2I5H LEU A 1 UNP O28741 CLONING ARTIFACT SEQADV 2I5H GLU A 196 UNP O28741 EXPRESSION TAG SEQADV 2I5H GLY A 197 UNP O28741 EXPRESSION TAG SEQADV 2I5H HIS A 198 UNP O28741 EXPRESSION TAG SEQADV 2I5H HIS A 199 UNP O28741 EXPRESSION TAG SEQADV 2I5H HIS A 200 UNP O28741 EXPRESSION TAG SEQADV 2I5H HIS A 201 UNP O28741 EXPRESSION TAG SEQADV 2I5H HIS A 202 UNP O28741 EXPRESSION TAG SEQADV 2I5H HIS A 203 UNP O28741 EXPRESSION TAG SEQRES 1 A 205 MET SER LEU GLU LYS PRO LYS VAL GLU ARG SER GLU GLY SEQRES 2 A 205 LYS GLU LYS LEU GLU ASP TYR ALA TYR VAL LEU ASP PHE SEQRES 3 A 205 MET PRO TYR GLY HIS PRO ASP ASP LYS ARG PRO ILE HIS SEQRES 4 A 205 ARG ARG GLU PRO LEU ALA GLN VAL VAL GLY GLU ARG ASN SEQRES 5 A 205 PHE THR LEU LEU GLU VAL SER ILE ARG LYS GLY LYS GLN SEQRES 6 A 205 PRO LEU VAL MET ASP ARG VAL TYR ILE GLY LYS GLY GLU SEQRES 7 A 205 ARG ASP VAL VAL TYR LYS ILE LYS ARG ARG LEU ARG TYR SEQRES 8 A 205 GLU ASP LEU THR PRO ALA ALA LYS THR GLU LEU PRO TYR SEQRES 9 A 205 VAL ILE GLU HIS ILE ILE LYS GLN ASP GLU LYS LYS TYR SEQRES 10 A 205 VAL ASP PHE PHE ASN LYS ALA ASP SER ILE THR THR ARG SEQRES 11 A 205 MET HIS GLN LEU GLU LEU LEU PRO GLY VAL GLY LYS LYS SEQRES 12 A 205 MET MET TRP ALA ILE ILE GLU GLU ARG LYS LYS ARG PRO SEQRES 13 A 205 PHE GLU SER PHE GLU ASP ILE ALA GLN ARG VAL LYS GLY SEQRES 14 A 205 ILE GLN ARG PRO GLU LYS LEU ILE VAL SER ARG ILE ILE SEQRES 15 A 205 TYR GLU ILE LYS ASN PRO GLN THR LYS TYR LYS LEU PHE SEQRES 16 A 205 THR ALA GLU GLY HIS HIS HIS HIS HIS HIS FORMUL 2 HOH *132(H2 O) HELIX 1 1 PRO A 35 ARG A 39 5 5 HELIX 2 2 ARG A 88 LEU A 92 5 5 HELIX 3 3 THR A 93 GLN A 110 1 18 HELIX 4 4 ASP A 111 ASN A 120 1 10 HELIX 5 5 HIS A 130 LEU A 135 5 6 HELIX 6 6 GLY A 139 ARG A 153 1 15 HELIX 7 7 SER A 157 VAL A 165 1 9 HELIX 8 8 ARG A 170 ASN A 185 1 16 SHEET 1 A 5 ARG A 69 TYR A 71 0 SHEET 2 A 5 TYR A 18 MET A 25 -1 N ALA A 19 O VAL A 70 SHEET 3 A 5 LEU A 42 GLY A 47 -1 O LEU A 42 N MET A 25 SHEET 4 A 5 LEU A 53 ILE A 58 -1 O LEU A 54 N VAL A 45 SHEET 5 A 5 VAL A 80 ARG A 86 -1 O TYR A 81 N SER A 57 CRYST1 76.730 37.490 85.250 90.00 95.60 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013033 0.000000 0.001278 0.00000 SCALE2 0.000000 0.026674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011786 0.00000