data_2I6X # _entry.id 2I6X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2I6X RCSB RCSB039213 WWPDB D_1000039213 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id apc80854 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2I6X _pdbx_database_status.recvd_initial_deposition_date 2006-08-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cuff, M.E.' 1 'Mussar, K.E.' 2 'Li, H.' 3 'Moy, S.' 4 'Joachimiak, A.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 # _citation.id primary _citation.title 'The structure of a predicted HAD-like family hydrolase from Porphyromonas gingivalis. (CASP Target)' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cuff, M.E.' 1 primary 'Mussar, K.E.' 2 primary 'Li, H.' 3 primary 'Moy, S.' 4 primary 'Joachimiak, A.' 5 # _cell.entry_id 2I6X _cell.length_a 78.727 _cell.length_b 78.727 _cell.length_c 139.879 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2I6X _symmetry.space_group_name_H-M 'P 62 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hydrolase, haloacid dehalogenase-like family' 24610.957 1 ? ? ? ? 2 water nat water 18.015 110 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)IRNIVFDLGGVLIHLNREESIRRFKAIGVADIEE(MSE)LDPYLQKGLFLDLESGRKSEEEFRTELSRYIGK ELTYQQVYDALLGFLEEISAEKFDYIDSLRPDYRLFLLSNTNPYVLDLA(MSE)SPRFLPSGRTLDSFFDKVYASCQ (MSE)GKYKPNEDIFLE(MSE)IADSG(MSE)KPEETLFIDDGPANVATAERLGFHTYCPDNGENWIPAITRLLREQK ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMIRNIVFDLGGVLIHLNREESIRRFKAIGVADIEEMLDPYLQKGLFLDLESGRKSEEEFRTELSRYIGKELTYQQVY DALLGFLEEISAEKFDYIDSLRPDYRLFLLSNTNPYVLDLAMSPRFLPSGRTLDSFFDKVYASCQMGKYKPNEDIFLEMI ADSGMKPEETLFIDDGPANVATAERLGFHTYCPDNGENWIPAITRLLREQK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier apc80854 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 ILE n 1 6 ARG n 1 7 ASN n 1 8 ILE n 1 9 VAL n 1 10 PHE n 1 11 ASP n 1 12 LEU n 1 13 GLY n 1 14 GLY n 1 15 VAL n 1 16 LEU n 1 17 ILE n 1 18 HIS n 1 19 LEU n 1 20 ASN n 1 21 ARG n 1 22 GLU n 1 23 GLU n 1 24 SER n 1 25 ILE n 1 26 ARG n 1 27 ARG n 1 28 PHE n 1 29 LYS n 1 30 ALA n 1 31 ILE n 1 32 GLY n 1 33 VAL n 1 34 ALA n 1 35 ASP n 1 36 ILE n 1 37 GLU n 1 38 GLU n 1 39 MSE n 1 40 LEU n 1 41 ASP n 1 42 PRO n 1 43 TYR n 1 44 LEU n 1 45 GLN n 1 46 LYS n 1 47 GLY n 1 48 LEU n 1 49 PHE n 1 50 LEU n 1 51 ASP n 1 52 LEU n 1 53 GLU n 1 54 SER n 1 55 GLY n 1 56 ARG n 1 57 LYS n 1 58 SER n 1 59 GLU n 1 60 GLU n 1 61 GLU n 1 62 PHE n 1 63 ARG n 1 64 THR n 1 65 GLU n 1 66 LEU n 1 67 SER n 1 68 ARG n 1 69 TYR n 1 70 ILE n 1 71 GLY n 1 72 LYS n 1 73 GLU n 1 74 LEU n 1 75 THR n 1 76 TYR n 1 77 GLN n 1 78 GLN n 1 79 VAL n 1 80 TYR n 1 81 ASP n 1 82 ALA n 1 83 LEU n 1 84 LEU n 1 85 GLY n 1 86 PHE n 1 87 LEU n 1 88 GLU n 1 89 GLU n 1 90 ILE n 1 91 SER n 1 92 ALA n 1 93 GLU n 1 94 LYS n 1 95 PHE n 1 96 ASP n 1 97 TYR n 1 98 ILE n 1 99 ASP n 1 100 SER n 1 101 LEU n 1 102 ARG n 1 103 PRO n 1 104 ASP n 1 105 TYR n 1 106 ARG n 1 107 LEU n 1 108 PHE n 1 109 LEU n 1 110 LEU n 1 111 SER n 1 112 ASN n 1 113 THR n 1 114 ASN n 1 115 PRO n 1 116 TYR n 1 117 VAL n 1 118 LEU n 1 119 ASP n 1 120 LEU n 1 121 ALA n 1 122 MSE n 1 123 SER n 1 124 PRO n 1 125 ARG n 1 126 PHE n 1 127 LEU n 1 128 PRO n 1 129 SER n 1 130 GLY n 1 131 ARG n 1 132 THR n 1 133 LEU n 1 134 ASP n 1 135 SER n 1 136 PHE n 1 137 PHE n 1 138 ASP n 1 139 LYS n 1 140 VAL n 1 141 TYR n 1 142 ALA n 1 143 SER n 1 144 CYS n 1 145 GLN n 1 146 MSE n 1 147 GLY n 1 148 LYS n 1 149 TYR n 1 150 LYS n 1 151 PRO n 1 152 ASN n 1 153 GLU n 1 154 ASP n 1 155 ILE n 1 156 PHE n 1 157 LEU n 1 158 GLU n 1 159 MSE n 1 160 ILE n 1 161 ALA n 1 162 ASP n 1 163 SER n 1 164 GLY n 1 165 MSE n 1 166 LYS n 1 167 PRO n 1 168 GLU n 1 169 GLU n 1 170 THR n 1 171 LEU n 1 172 PHE n 1 173 ILE n 1 174 ASP n 1 175 ASP n 1 176 GLY n 1 177 PRO n 1 178 ALA n 1 179 ASN n 1 180 VAL n 1 181 ALA n 1 182 THR n 1 183 ALA n 1 184 GLU n 1 185 ARG n 1 186 LEU n 1 187 GLY n 1 188 PHE n 1 189 HIS n 1 190 THR n 1 191 TYR n 1 192 CYS n 1 193 PRO n 1 194 ASP n 1 195 ASN n 1 196 GLY n 1 197 GLU n 1 198 ASN n 1 199 TRP n 1 200 ILE n 1 201 PRO n 1 202 ALA n 1 203 ILE n 1 204 THR n 1 205 ARG n 1 206 LEU n 1 207 LEU n 1 208 ARG n 1 209 GLU n 1 210 GLN n 1 211 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Porphyromonas _entity_src_gen.pdbx_gene_src_gene PG_0725 _entity_src_gen.gene_src_species 'Porphyromonas gingivalis' _entity_src_gen.gene_src_strain W83 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Porphyromonas gingivalis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 242619 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain TIGR4 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7MWA6_PORGI _struct_ref.pdbx_db_accession Q7MWA6 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2I6X _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 211 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q7MWA6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 208 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 208 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2I6X SER A 1 ? UNP Q7MWA6 ? ? 'CLONING ARTIFACT' -2 1 1 2I6X ASN A 2 ? UNP Q7MWA6 ? ? 'CLONING ARTIFACT' -1 2 1 2I6X ALA A 3 ? UNP Q7MWA6 ? ? 'CLONING ARTIFACT' 0 3 1 2I6X MSE A 4 ? UNP Q7MWA6 MET 1 'MODIFIED RESIDUE' 1 4 1 2I6X MSE A 39 ? UNP Q7MWA6 MET 36 'MODIFIED RESIDUE' 36 5 1 2I6X MSE A 122 ? UNP Q7MWA6 MET 119 'MODIFIED RESIDUE' 119 6 1 2I6X MSE A 146 ? UNP Q7MWA6 MET 143 'MODIFIED RESIDUE' 143 7 1 2I6X MSE A 159 ? UNP Q7MWA6 MET 156 'MODIFIED RESIDUE' 156 8 1 2I6X MSE A 165 ? UNP Q7MWA6 MET 162 'MODIFIED RESIDUE' 162 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2I6X _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_percent_sol 51.60 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '1.0 M K/Na tartrate, 0.1M Tris pH7.0, 0.2M Li2SO4, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2005-07-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.979616 1.0 2 0.97951 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.979616, 0.97951' # _reflns.entry_id 2I6X _reflns.observed_criterion_sigma_F -3 _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 2.4 _reflns.d_resolution_low 38.8 _reflns.number_all 10573 _reflns.number_obs 10573 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.4 _reflns_shell.d_res_low 2.46 _reflns_shell.percent_possible_all 96.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2I6X _refine.ls_number_reflns_obs 10067 _refine.ls_number_reflns_all 1573 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.80 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 99.54 _refine.ls_R_factor_obs 0.21271 _refine.ls_R_factor_all 0.21271 _refine.ls_R_factor_R_work 0.20948 _refine.ls_R_factor_R_free 0.27583 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 505 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.909 _refine.B_iso_mean 64.905 _refine.aniso_B[1][1] 1.68 _refine.aniso_B[2][2] 1.68 _refine.aniso_B[3][3] -2.53 _refine.aniso_B[1][2] 0.84 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.424 _refine.pdbx_overall_ESU_R_Free 0.289 _refine.overall_SU_ML 0.207 _refine.overall_SU_B 16.427 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1659 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 110 _refine_hist.number_atoms_total 1769 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 38.80 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.022 ? 1779 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.484 1.981 ? 2411 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.535 5.000 ? 221 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.863 23.617 ? 94 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.859 15.000 ? 321 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.988 15.000 ? 17 'X-RAY DIFFRACTION' ? r_chiral_restr 0.107 0.200 ? 255 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1392 'X-RAY DIFFRACTION' ? r_nbd_refined 0.211 0.200 ? 816 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.306 0.200 ? 1223 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.156 0.200 ? 103 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.208 0.200 ? 31 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.205 0.200 ? 16 'X-RAY DIFFRACTION' ? r_mcbond_it 0.912 1.500 ? 1102 'X-RAY DIFFRACTION' ? r_mcangle_it 1.170 2.000 ? 1726 'X-RAY DIFFRACTION' ? r_scbond_it 2.193 3.000 ? 762 'X-RAY DIFFRACTION' ? r_scangle_it 3.257 4.500 ? 682 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.400 _refine_ls_shell.d_res_low 2.462 _refine_ls_shell.number_reflns_R_work 719 _refine_ls_shell.R_factor_R_work 0.227 _refine_ls_shell.percent_reflns_obs 98.69 _refine_ls_shell.R_factor_R_free 0.367 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2I6X _struct.title 'The structure of a predicted HAD-like family hydrolase from Porphyromonas gingivalis.' _struct.pdbx_descriptor 'Hydrolase, haloacid dehalogenase-like family' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2I6X _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Porphyromonas gingivalis, HAD superfamily, hydrolase, structural genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 20 ? ILE A 31 ? ASN A 17 ILE A 28 1 ? 12 HELX_P HELX_P2 2 ASP A 35 ? LEU A 40 ? ASP A 32 LEU A 37 1 ? 6 HELX_P HELX_P3 3 GLY A 47 ? GLY A 55 ? GLY A 44 GLY A 52 1 ? 9 HELX_P HELX_P4 4 SER A 58 ? GLY A 71 ? SER A 55 GLY A 68 1 ? 14 HELX_P HELX_P5 5 THR A 75 ? LEU A 84 ? THR A 72 LEU A 81 1 ? 10 HELX_P HELX_P6 6 SER A 91 ? ARG A 102 ? SER A 88 ARG A 99 1 ? 12 HELX_P HELX_P7 7 ASN A 114 ? MSE A 122 ? ASN A 111 MSE A 119 1 ? 9 HELX_P HELX_P8 8 THR A 132 ? PHE A 137 ? THR A 129 PHE A 134 5 ? 6 HELX_P HELX_P9 9 SER A 143 ? GLY A 147 ? SER A 140 GLY A 144 1 ? 5 HELX_P HELX_P10 10 ASN A 152 ? GLY A 164 ? ASN A 149 GLY A 161 1 ? 13 HELX_P HELX_P11 11 LYS A 166 ? GLU A 168 ? LYS A 163 GLU A 165 5 ? 3 HELX_P HELX_P12 12 GLY A 176 ? LEU A 186 ? GLY A 173 LEU A 183 1 ? 11 HELX_P HELX_P13 13 TRP A 199 ? ARG A 208 ? TRP A 196 ARG A 205 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 3 C ? ? ? 1_555 A MSE 4 N ? ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A MSE 4 C ? ? ? 1_555 A ILE 5 N ? ? A MSE 1 A ILE 2 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale ? ? A GLU 38 C ? ? ? 1_555 A MSE 39 N A ? A GLU 35 A MSE 36 1_555 ? ? ? ? ? ? ? 1.335 ? covale4 covale ? ? A GLU 38 C ? ? ? 1_555 A MSE 39 N B ? A GLU 35 A MSE 36 1_555 ? ? ? ? ? ? ? 1.325 ? covale5 covale ? ? A MSE 39 C A ? ? 1_555 A LEU 40 N ? ? A MSE 36 A LEU 37 1_555 ? ? ? ? ? ? ? 1.335 ? covale6 covale ? ? A MSE 39 C B ? ? 1_555 A LEU 40 N ? ? A MSE 36 A LEU 37 1_555 ? ? ? ? ? ? ? 1.334 ? covale7 covale ? ? A ALA 121 C ? ? ? 1_555 A MSE 122 N A ? A ALA 118 A MSE 119 1_555 ? ? ? ? ? ? ? 1.325 ? covale8 covale ? ? A ALA 121 C ? ? ? 1_555 A MSE 122 N B ? A ALA 118 A MSE 119 1_555 ? ? ? ? ? ? ? 1.333 ? covale9 covale ? ? A MSE 122 C B ? ? 1_555 A SER 123 N ? ? A MSE 119 A SER 120 1_555 ? ? ? ? ? ? ? 1.330 ? covale10 covale ? ? A MSE 122 C A ? ? 1_555 A SER 123 N ? ? A MSE 119 A SER 120 1_555 ? ? ? ? ? ? ? 1.336 ? covale11 covale ? ? A GLN 145 C ? ? ? 1_555 A MSE 146 N ? ? A GLN 142 A MSE 143 1_555 ? ? ? ? ? ? ? 1.329 ? covale12 covale ? ? A MSE 146 C ? ? ? 1_555 A GLY 147 N ? ? A MSE 143 A GLY 144 1_555 ? ? ? ? ? ? ? 1.329 ? covale13 covale ? ? A GLU 158 C ? ? ? 1_555 A MSE 159 N ? ? A GLU 155 A MSE 156 1_555 ? ? ? ? ? ? ? 1.339 ? covale14 covale ? ? A MSE 159 C ? ? ? 1_555 A ILE 160 N ? ? A MSE 156 A ILE 157 1_555 ? ? ? ? ? ? ? 1.329 ? covale15 covale ? ? A GLY 164 C ? ? ? 1_555 A MSE 165 N ? ? A GLY 161 A MSE 162 1_555 ? ? ? ? ? ? ? 1.325 ? covale16 covale ? ? A MSE 165 C ? ? ? 1_555 A LYS 166 N ? ? A MSE 162 A LYS 163 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 150 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 147 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 151 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 148 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 6.06 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 139 ? ALA A 142 ? LYS A 136 ALA A 139 A 2 ARG A 106 ? SER A 111 ? ARG A 103 SER A 108 A 3 ASN A 7 ? PHE A 10 ? ASN A 4 PHE A 7 A 4 THR A 170 ? ILE A 173 ? THR A 167 ILE A 170 A 5 HIS A 189 ? TYR A 191 ? HIS A 186 TYR A 188 B 1 ILE A 17 ? LEU A 19 ? ILE A 14 LEU A 16 B 2 LEU A 87 ? ILE A 90 ? LEU A 84 ILE A 87 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 141 ? O TYR A 138 N LEU A 109 ? N LEU A 106 A 2 3 O LEU A 110 ? O LEU A 107 N PHE A 10 ? N PHE A 7 A 3 4 N VAL A 9 ? N VAL A 6 O LEU A 171 ? O LEU A 168 A 4 5 N PHE A 172 ? N PHE A 169 O HIS A 189 ? O HIS A 186 B 1 2 N HIS A 18 ? N HIS A 15 O GLU A 89 ? O GLU A 86 # _database_PDB_matrix.entry_id 2I6X _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2I6X _atom_sites.fract_transf_matrix[1][1] 0.012702 _atom_sites.fract_transf_matrix[1][2] 0.007334 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014667 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007149 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 ILE 5 2 2 ILE ILE A . n A 1 6 ARG 6 3 3 ARG ARG A . n A 1 7 ASN 7 4 4 ASN ASN A . n A 1 8 ILE 8 5 5 ILE ILE A . n A 1 9 VAL 9 6 6 VAL VAL A . n A 1 10 PHE 10 7 7 PHE PHE A . n A 1 11 ASP 11 8 8 ASP ASP A . n A 1 12 LEU 12 9 9 LEU LEU A . n A 1 13 GLY 13 10 10 GLY GLY A . n A 1 14 GLY 14 11 11 GLY GLY A . n A 1 15 VAL 15 12 12 VAL VAL A . n A 1 16 LEU 16 13 13 LEU LEU A . n A 1 17 ILE 17 14 14 ILE ILE A . n A 1 18 HIS 18 15 15 HIS HIS A . n A 1 19 LEU 19 16 16 LEU LEU A . n A 1 20 ASN 20 17 17 ASN ASN A . n A 1 21 ARG 21 18 18 ARG ARG A . n A 1 22 GLU 22 19 19 GLU GLU A . n A 1 23 GLU 23 20 20 GLU GLU A . n A 1 24 SER 24 21 21 SER SER A . n A 1 25 ILE 25 22 22 ILE ILE A . n A 1 26 ARG 26 23 23 ARG ARG A . n A 1 27 ARG 27 24 24 ARG ARG A . n A 1 28 PHE 28 25 25 PHE PHE A . n A 1 29 LYS 29 26 26 LYS LYS A . n A 1 30 ALA 30 27 27 ALA ALA A . n A 1 31 ILE 31 28 28 ILE ILE A . n A 1 32 GLY 32 29 29 GLY GLY A . n A 1 33 VAL 33 30 30 VAL VAL A . n A 1 34 ALA 34 31 31 ALA ALA A . n A 1 35 ASP 35 32 32 ASP ASP A . n A 1 36 ILE 36 33 33 ILE ILE A . n A 1 37 GLU 37 34 34 GLU GLU A . n A 1 38 GLU 38 35 35 GLU GLU A . n A 1 39 MSE 39 36 36 MSE MSE A . n A 1 40 LEU 40 37 37 LEU LEU A . n A 1 41 ASP 41 38 38 ASP ASP A . n A 1 42 PRO 42 39 39 PRO PRO A . n A 1 43 TYR 43 40 ? ? ? A . n A 1 44 LEU 44 41 ? ? ? A . n A 1 45 GLN 45 42 ? ? ? A . n A 1 46 LYS 46 43 43 LYS LYS A . n A 1 47 GLY 47 44 44 GLY GLY A . n A 1 48 LEU 48 45 45 LEU LEU A . n A 1 49 PHE 49 46 46 PHE PHE A . n A 1 50 LEU 50 47 47 LEU LEU A . n A 1 51 ASP 51 48 48 ASP ASP A . n A 1 52 LEU 52 49 49 LEU LEU A . n A 1 53 GLU 53 50 50 GLU GLU A . n A 1 54 SER 54 51 51 SER SER A . n A 1 55 GLY 55 52 52 GLY GLY A . n A 1 56 ARG 56 53 53 ARG ARG A . n A 1 57 LYS 57 54 54 LYS LYS A . n A 1 58 SER 58 55 55 SER SER A . n A 1 59 GLU 59 56 56 GLU GLU A . n A 1 60 GLU 60 57 57 GLU GLU A . n A 1 61 GLU 61 58 58 GLU GLU A . n A 1 62 PHE 62 59 59 PHE PHE A . n A 1 63 ARG 63 60 60 ARG ARG A . n A 1 64 THR 64 61 61 THR THR A . n A 1 65 GLU 65 62 62 GLU GLU A . n A 1 66 LEU 66 63 63 LEU LEU A . n A 1 67 SER 67 64 64 SER SER A . n A 1 68 ARG 68 65 65 ARG ARG A . n A 1 69 TYR 69 66 66 TYR TYR A . n A 1 70 ILE 70 67 67 ILE ILE A . n A 1 71 GLY 71 68 68 GLY GLY A . n A 1 72 LYS 72 69 69 LYS LYS A . n A 1 73 GLU 73 70 70 GLU GLU A . n A 1 74 LEU 74 71 71 LEU LEU A . n A 1 75 THR 75 72 72 THR THR A . n A 1 76 TYR 76 73 73 TYR TYR A . n A 1 77 GLN 77 74 74 GLN GLN A . n A 1 78 GLN 78 75 75 GLN GLN A . n A 1 79 VAL 79 76 76 VAL VAL A . n A 1 80 TYR 80 77 77 TYR TYR A . n A 1 81 ASP 81 78 78 ASP ASP A . n A 1 82 ALA 82 79 79 ALA ALA A . n A 1 83 LEU 83 80 80 LEU LEU A . n A 1 84 LEU 84 81 81 LEU LEU A . n A 1 85 GLY 85 82 82 GLY GLY A . n A 1 86 PHE 86 83 83 PHE PHE A . n A 1 87 LEU 87 84 84 LEU LEU A . n A 1 88 GLU 88 85 85 GLU GLU A . n A 1 89 GLU 89 86 86 GLU GLU A . n A 1 90 ILE 90 87 87 ILE ILE A . n A 1 91 SER 91 88 88 SER SER A . n A 1 92 ALA 92 89 89 ALA ALA A . n A 1 93 GLU 93 90 90 GLU GLU A . n A 1 94 LYS 94 91 91 LYS LYS A . n A 1 95 PHE 95 92 92 PHE PHE A . n A 1 96 ASP 96 93 93 ASP ASP A . n A 1 97 TYR 97 94 94 TYR TYR A . n A 1 98 ILE 98 95 95 ILE ILE A . n A 1 99 ASP 99 96 96 ASP ASP A . n A 1 100 SER 100 97 97 SER SER A . n A 1 101 LEU 101 98 98 LEU LEU A . n A 1 102 ARG 102 99 99 ARG ARG A . n A 1 103 PRO 103 100 100 PRO PRO A . n A 1 104 ASP 104 101 101 ASP ASP A . n A 1 105 TYR 105 102 102 TYR TYR A . n A 1 106 ARG 106 103 103 ARG ARG A . n A 1 107 LEU 107 104 104 LEU LEU A . n A 1 108 PHE 108 105 105 PHE PHE A . n A 1 109 LEU 109 106 106 LEU LEU A . n A 1 110 LEU 110 107 107 LEU LEU A . n A 1 111 SER 111 108 108 SER SER A . n A 1 112 ASN 112 109 109 ASN ASN A . n A 1 113 THR 113 110 110 THR THR A . n A 1 114 ASN 114 111 111 ASN ASN A . n A 1 115 PRO 115 112 112 PRO PRO A . n A 1 116 TYR 116 113 113 TYR TYR A . n A 1 117 VAL 117 114 114 VAL VAL A . n A 1 118 LEU 118 115 115 LEU LEU A . n A 1 119 ASP 119 116 116 ASP ASP A . n A 1 120 LEU 120 117 117 LEU LEU A . n A 1 121 ALA 121 118 118 ALA ALA A . n A 1 122 MSE 122 119 119 MSE MSE A . n A 1 123 SER 123 120 120 SER SER A . n A 1 124 PRO 124 121 121 PRO PRO A . n A 1 125 ARG 125 122 122 ARG ARG A . n A 1 126 PHE 126 123 123 PHE PHE A . n A 1 127 LEU 127 124 124 LEU LEU A . n A 1 128 PRO 128 125 125 PRO PRO A . n A 1 129 SER 129 126 126 SER SER A . n A 1 130 GLY 130 127 127 GLY GLY A . n A 1 131 ARG 131 128 128 ARG ARG A . n A 1 132 THR 132 129 129 THR THR A . n A 1 133 LEU 133 130 130 LEU LEU A . n A 1 134 ASP 134 131 131 ASP ASP A . n A 1 135 SER 135 132 132 SER SER A . n A 1 136 PHE 136 133 133 PHE PHE A . n A 1 137 PHE 137 134 134 PHE PHE A . n A 1 138 ASP 138 135 135 ASP ASP A . n A 1 139 LYS 139 136 136 LYS LYS A . n A 1 140 VAL 140 137 137 VAL VAL A . n A 1 141 TYR 141 138 138 TYR TYR A . n A 1 142 ALA 142 139 139 ALA ALA A . n A 1 143 SER 143 140 140 SER SER A . n A 1 144 CYS 144 141 141 CYS CYS A . n A 1 145 GLN 145 142 142 GLN GLN A . n A 1 146 MSE 146 143 143 MSE MSE A . n A 1 147 GLY 147 144 144 GLY GLY A . n A 1 148 LYS 148 145 145 LYS LYS A . n A 1 149 TYR 149 146 146 TYR TYR A . n A 1 150 LYS 150 147 147 LYS LYS A . n A 1 151 PRO 151 148 148 PRO PRO A . n A 1 152 ASN 152 149 149 ASN ASN A . n A 1 153 GLU 153 150 150 GLU GLU A . n A 1 154 ASP 154 151 151 ASP ASP A . n A 1 155 ILE 155 152 152 ILE ILE A . n A 1 156 PHE 156 153 153 PHE PHE A . n A 1 157 LEU 157 154 154 LEU LEU A . n A 1 158 GLU 158 155 155 GLU GLU A . n A 1 159 MSE 159 156 156 MSE MSE A . n A 1 160 ILE 160 157 157 ILE ILE A . n A 1 161 ALA 161 158 158 ALA ALA A . n A 1 162 ASP 162 159 159 ASP ASP A . n A 1 163 SER 163 160 160 SER SER A . n A 1 164 GLY 164 161 161 GLY GLY A . n A 1 165 MSE 165 162 162 MSE MSE A . n A 1 166 LYS 166 163 163 LYS LYS A . n A 1 167 PRO 167 164 164 PRO PRO A . n A 1 168 GLU 168 165 165 GLU GLU A . n A 1 169 GLU 169 166 166 GLU GLU A . n A 1 170 THR 170 167 167 THR THR A . n A 1 171 LEU 171 168 168 LEU LEU A . n A 1 172 PHE 172 169 169 PHE PHE A . n A 1 173 ILE 173 170 170 ILE ILE A . n A 1 174 ASP 174 171 171 ASP ASP A . n A 1 175 ASP 175 172 172 ASP ASP A . n A 1 176 GLY 176 173 173 GLY GLY A . n A 1 177 PRO 177 174 174 PRO PRO A . n A 1 178 ALA 178 175 175 ALA ALA A . n A 1 179 ASN 179 176 176 ASN ASN A . n A 1 180 VAL 180 177 177 VAL VAL A . n A 1 181 ALA 181 178 178 ALA ALA A . n A 1 182 THR 182 179 179 THR THR A . n A 1 183 ALA 183 180 180 ALA ALA A . n A 1 184 GLU 184 181 181 GLU GLU A . n A 1 185 ARG 185 182 182 ARG ARG A . n A 1 186 LEU 186 183 183 LEU LEU A . n A 1 187 GLY 187 184 184 GLY GLY A . n A 1 188 PHE 188 185 185 PHE PHE A . n A 1 189 HIS 189 186 186 HIS HIS A . n A 1 190 THR 190 187 187 THR THR A . n A 1 191 TYR 191 188 188 TYR TYR A . n A 1 192 CYS 192 189 189 CYS CYS A . n A 1 193 PRO 193 190 190 PRO PRO A . n A 1 194 ASP 194 191 191 ASP ASP A . n A 1 195 ASN 195 192 192 ASN ASN A . n A 1 196 GLY 196 193 193 GLY GLY A . n A 1 197 GLU 197 194 194 GLU GLU A . n A 1 198 ASN 198 195 195 ASN ASN A . n A 1 199 TRP 199 196 196 TRP TRP A . n A 1 200 ILE 200 197 197 ILE ILE A . n A 1 201 PRO 201 198 198 PRO PRO A . n A 1 202 ALA 202 199 199 ALA ALA A . n A 1 203 ILE 203 200 200 ILE ILE A . n A 1 204 THR 204 201 201 THR THR A . n A 1 205 ARG 205 202 202 ARG ARG A . n A 1 206 LEU 206 203 203 LEU LEU A . n A 1 207 LEU 207 204 204 LEU LEU A . n A 1 208 ARG 208 205 205 ARG ARG A . n A 1 209 GLU 209 206 206 GLU GLU A . n A 1 210 GLN 210 207 207 GLN GLN A . n A 1 211 LYS 211 208 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 39 A MSE 36 ? MET SELENOMETHIONINE 3 A MSE 122 A MSE 119 ? MET SELENOMETHIONINE 4 A MSE 146 A MSE 143 ? MET SELENOMETHIONINE 5 A MSE 159 A MSE 156 ? MET SELENOMETHIONINE 6 A MSE 165 A MSE 162 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-10 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 56.0846 17.0542 2.7369 -0.3846 0.0182 -0.2359 -0.0509 0.0139 -0.0019 5.5288 4.7715 2.1803 2.4841 1.6577 0.3547 0.0310 0.4058 0.3510 -0.1121 -0.1069 0.1213 -0.3475 0.2111 0.0759 'X-RAY DIFFRACTION' 2 ? refined 59.2262 7.4982 24.9772 0.0262 0.0334 -0.2295 -0.3396 -0.0861 0.0110 9.5120 3.4914 8.4969 0.4586 -1.2714 1.2387 0.3033 -0.1463 -0.6020 0.5795 -0.1728 0.0969 1.4191 -0.9975 -0.1305 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 4 A 15 A 18 ? 'X-RAY DIFFRACTION' ? 2 1 A 85 A 88 A 207 A 210 ? 'X-RAY DIFFRACTION' ? 3 2 A 16 A 19 A 84 A 87 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 HKL-3000 phasing . ? 5 SHELXD phasing . ? 6 SHELXE 'model building' . ? 7 MLPHARE phasing . ? 8 DM phasing . ? 9 SOLVE phasing . ? 10 RESOLVE phasing . ? 11 ARP/wARP 'model building' . ? 12 CCP4 phasing . ? 13 O 'model building' . ? 14 Coot 'model building' . ? 15 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 9 ? ? -94.89 -72.87 2 1 SER A 88 ? ? -68.45 95.65 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A TYR 40 ? A TYR 43 4 1 Y 1 A LEU 41 ? A LEU 44 5 1 Y 1 A GLN 42 ? A GLN 45 6 1 Y 1 A LYS 208 ? A LYS 211 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 209 1 HOH HOH A . B 2 HOH 2 210 3 HOH HOH A . B 2 HOH 3 211 4 HOH HOH A . B 2 HOH 4 212 5 HOH HOH A . B 2 HOH 5 213 6 HOH HOH A . B 2 HOH 6 214 7 HOH HOH A . B 2 HOH 7 215 9 HOH HOH A . B 2 HOH 8 216 10 HOH HOH A . B 2 HOH 9 217 11 HOH HOH A . B 2 HOH 10 218 12 HOH HOH A . B 2 HOH 11 219 13 HOH HOH A . B 2 HOH 12 220 14 HOH HOH A . B 2 HOH 13 221 15 HOH HOH A . B 2 HOH 14 222 16 HOH HOH A . B 2 HOH 15 223 17 HOH HOH A . B 2 HOH 16 224 18 HOH HOH A . B 2 HOH 17 225 19 HOH HOH A . B 2 HOH 18 226 20 HOH HOH A . B 2 HOH 19 227 22 HOH HOH A . B 2 HOH 20 228 24 HOH HOH A . B 2 HOH 21 229 25 HOH HOH A . B 2 HOH 22 230 27 HOH HOH A . B 2 HOH 23 231 28 HOH HOH A . B 2 HOH 24 232 29 HOH HOH A . B 2 HOH 25 233 30 HOH HOH A . B 2 HOH 26 234 31 HOH HOH A . B 2 HOH 27 235 32 HOH HOH A . B 2 HOH 28 236 33 HOH HOH A . B 2 HOH 29 237 34 HOH HOH A . B 2 HOH 30 238 35 HOH HOH A . B 2 HOH 31 239 36 HOH HOH A . B 2 HOH 32 240 37 HOH HOH A . B 2 HOH 33 241 38 HOH HOH A . B 2 HOH 34 242 39 HOH HOH A . B 2 HOH 35 243 40 HOH HOH A . B 2 HOH 36 244 41 HOH HOH A . B 2 HOH 37 245 42 HOH HOH A . B 2 HOH 38 246 43 HOH HOH A . B 2 HOH 39 247 44 HOH HOH A . B 2 HOH 40 248 45 HOH HOH A . B 2 HOH 41 249 46 HOH HOH A . B 2 HOH 42 250 48 HOH HOH A . B 2 HOH 43 251 49 HOH HOH A . B 2 HOH 44 252 50 HOH HOH A . B 2 HOH 45 253 51 HOH HOH A . B 2 HOH 46 254 52 HOH HOH A . B 2 HOH 47 255 53 HOH HOH A . B 2 HOH 48 256 54 HOH HOH A . B 2 HOH 49 257 55 HOH HOH A . B 2 HOH 50 258 56 HOH HOH A . B 2 HOH 51 259 57 HOH HOH A . B 2 HOH 52 260 58 HOH HOH A . B 2 HOH 53 261 59 HOH HOH A . B 2 HOH 54 262 61 HOH HOH A . B 2 HOH 55 263 62 HOH HOH A . B 2 HOH 56 264 63 HOH HOH A . B 2 HOH 57 265 64 HOH HOH A . B 2 HOH 58 266 65 HOH HOH A . B 2 HOH 59 267 66 HOH HOH A . B 2 HOH 60 268 67 HOH HOH A . B 2 HOH 61 269 68 HOH HOH A . B 2 HOH 62 270 70 HOH HOH A . B 2 HOH 63 271 71 HOH HOH A . B 2 HOH 64 272 72 HOH HOH A . B 2 HOH 65 273 73 HOH HOH A . B 2 HOH 66 274 74 HOH HOH A . B 2 HOH 67 275 75 HOH HOH A . B 2 HOH 68 276 76 HOH HOH A . B 2 HOH 69 277 77 HOH HOH A . B 2 HOH 70 278 78 HOH HOH A . B 2 HOH 71 279 80 HOH HOH A . B 2 HOH 72 280 81 HOH HOH A . B 2 HOH 73 281 82 HOH HOH A . B 2 HOH 74 282 84 HOH HOH A . B 2 HOH 75 283 85 HOH HOH A . B 2 HOH 76 284 88 HOH HOH A . B 2 HOH 77 285 93 HOH HOH A . B 2 HOH 78 286 94 HOH HOH A . B 2 HOH 79 287 100 HOH HOH A . B 2 HOH 80 288 101 HOH HOH A . B 2 HOH 81 289 102 HOH HOH A . B 2 HOH 82 290 103 HOH HOH A . B 2 HOH 83 291 104 HOH HOH A . B 2 HOH 84 292 105 HOH HOH A . B 2 HOH 85 293 106 HOH HOH A . B 2 HOH 86 294 107 HOH HOH A . B 2 HOH 87 295 108 HOH HOH A . B 2 HOH 88 296 110 HOH HOH A . B 2 HOH 89 297 116 HOH HOH A . B 2 HOH 90 298 117 HOH HOH A . B 2 HOH 91 299 118 HOH HOH A . B 2 HOH 92 300 119 HOH HOH A . B 2 HOH 93 301 120 HOH HOH A . B 2 HOH 94 302 121 HOH HOH A . B 2 HOH 95 303 123 HOH HOH A . B 2 HOH 96 304 124 HOH HOH A . B 2 HOH 97 305 127 HOH HOH A . B 2 HOH 98 306 131 HOH HOH A . B 2 HOH 99 307 132 HOH HOH A . B 2 HOH 100 308 133 HOH HOH A . B 2 HOH 101 309 134 HOH HOH A . B 2 HOH 102 310 135 HOH HOH A . B 2 HOH 103 311 136 HOH HOH A . B 2 HOH 104 312 137 HOH HOH A . B 2 HOH 105 313 138 HOH HOH A . B 2 HOH 106 314 139 HOH HOH A . B 2 HOH 107 315 140 HOH HOH A . B 2 HOH 108 316 141 HOH HOH A . B 2 HOH 109 317 142 HOH HOH A . B 2 HOH 110 318 143 HOH HOH A . #