HEADER LIGASE 31-AUG-06 2I80 TITLE ALLOSTERIC INHIBITION OF STAPHYLOCOCCUS AUREUS D-ALANINE:D-ALANINE TITLE 2 LIGASE REVEALED BY CRYSTALLOGRAPHIC STUDIES COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALANINE-D-ALANINE LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: D-ALANYLALANINE SYNTHETASE, D-ALA-D-ALA LIGASE; COMPND 5 EC: 6.3.2.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: STRAIN COL; SOURCE 5 GENE: DDL, DDLA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15[PREP4]; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE-60 KEYWDS PROTEIN-INHIBITOR COMPLEX, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR S.LIU,J.S.CHANG,J.T.HERBERG,M.-M.HORNG,P.K.TOMICH,A.H.LIN,K.R.MAROTTI REVDAT 5 30-AUG-23 2I80 1 REMARK SEQADV REVDAT 4 13-JUL-11 2I80 1 VERSN REVDAT 3 24-FEB-09 2I80 1 VERSN REVDAT 2 24-OCT-06 2I80 1 JRNL REVDAT 1 26-SEP-06 2I80 0 JRNL AUTH S.LIU,J.S.CHANG,J.T.HERBERG,M.M.HORNG,P.K.TOMICH,A.H.LIN, JRNL AUTH 2 K.R.MAROTTI JRNL TITL ALLOSTERIC INHIBITION OF STAPHYLOCOCCUS AUREUS JRNL TITL 2 D-ALANINE:D-ALANINE LIGASE REVEALED BY CRYSTALLOGRAPHIC JRNL TITL 3 STUDIES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 15178 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 17015835 JRNL DOI 10.1073/PNAS.0604905103 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 31696 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1667 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1752 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5496 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 32.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : 0.71000 REMARK 3 B33 (A**2) : -1.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.27000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.335 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.241 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.854 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5647 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5008 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7653 ; 1.715 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11735 ; 0.864 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 688 ; 7.234 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 277 ;39.565 ;25.957 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 993 ;17.784 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;20.331 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 848 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6259 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1050 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1272 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5304 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2768 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3517 ; 0.092 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 182 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.359 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.165 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 62 ; 0.229 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.222 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4344 ; 1.220 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1401 ; 0.217 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5559 ; 1.517 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2568 ; 2.364 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2094 ; 3.475 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): 25.9980 0.0850 -4.9130 REMARK 3 T TENSOR REMARK 3 T11: -0.0925 T22: 0.0062 REMARK 3 T33: -0.0438 T12: 0.0439 REMARK 3 T13: 0.0423 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 2.8517 L22: 1.1428 REMARK 3 L33: 3.4708 L12: 0.2203 REMARK 3 L13: -0.7548 L23: -0.9285 REMARK 3 S TENSOR REMARK 3 S11: -0.0374 S12: 0.3100 S13: -0.1070 REMARK 3 S21: -0.1332 S22: -0.1493 S23: -0.1709 REMARK 3 S31: 0.2504 S32: 0.2279 S33: 0.1867 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 126 A 219 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6770 -16.6140 20.8400 REMARK 3 T TENSOR REMARK 3 T11: 0.0782 T22: -0.1003 REMARK 3 T33: -0.0452 T12: -0.0595 REMARK 3 T13: -0.0152 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 2.3997 L22: 2.3813 REMARK 3 L33: 2.3527 L12: -0.8222 REMARK 3 L13: 1.4470 L23: -1.2374 REMARK 3 S TENSOR REMARK 3 S11: 0.0996 S12: -0.0952 S13: -0.1905 REMARK 3 S21: -0.0765 S22: 0.1218 S23: 0.1096 REMARK 3 S31: 0.5563 S32: -0.2037 S33: -0.2213 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 220 A 358 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5180 1.3800 3.0950 REMARK 3 T TENSOR REMARK 3 T11: -0.1185 T22: -0.0312 REMARK 3 T33: -0.0037 T12: 0.0081 REMARK 3 T13: -0.0106 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 1.8108 L22: 1.5539 REMARK 3 L33: 1.0366 L12: 1.0123 REMARK 3 L13: -0.3552 L23: -0.1576 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: 0.1650 S13: 0.0574 REMARK 3 S21: -0.0482 S22: 0.0229 S23: 0.1631 REMARK 3 S31: -0.0223 S32: -0.1590 S33: -0.0399 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 125 REMARK 3 ORIGIN FOR THE GROUP (A): 42.1500 2.8980 17.4060 REMARK 3 T TENSOR REMARK 3 T11: -0.0760 T22: 0.0778 REMARK 3 T33: -0.0481 T12: -0.0467 REMARK 3 T13: -0.0161 T23: 0.0460 REMARK 3 L TENSOR REMARK 3 L11: 3.0499 L22: 0.9020 REMARK 3 L33: 3.3656 L12: 0.3708 REMARK 3 L13: 0.1157 L23: 0.4811 REMARK 3 S TENSOR REMARK 3 S11: -0.0377 S12: 0.3088 S13: 0.0986 REMARK 3 S21: 0.0483 S22: 0.0559 S23: -0.0761 REMARK 3 S31: -0.3602 S32: 0.6227 S33: -0.0182 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 126 B 219 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9860 14.8290 26.4650 REMARK 3 T TENSOR REMARK 3 T11: 0.0155 T22: -0.0880 REMARK 3 T33: -0.0255 T12: 0.0326 REMARK 3 T13: 0.0101 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 0.5807 L22: 3.0711 REMARK 3 L33: 3.8770 L12: -0.8968 REMARK 3 L13: 0.3890 L23: -1.1667 REMARK 3 S TENSOR REMARK 3 S11: -0.1369 S12: -0.0357 S13: 0.0330 REMARK 3 S21: 0.1747 S22: 0.1560 S23: 0.0753 REMARK 3 S31: -0.5331 S32: -0.2494 S33: -0.0190 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 220 B 360 REMARK 3 ORIGIN FOR THE GROUP (A): 28.4820 -2.3170 33.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.0087 T22: -0.0892 REMARK 3 T33: -0.0579 T12: 0.0067 REMARK 3 T13: -0.0117 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.5624 L22: 1.2229 REMARK 3 L33: 2.0389 L12: -0.5306 REMARK 3 L13: -0.4701 L23: 0.5289 REMARK 3 S TENSOR REMARK 3 S11: -0.0486 S12: -0.0391 S13: -0.0588 REMARK 3 S21: 0.2259 S22: -0.0352 S23: 0.0067 REMARK 3 S31: 0.0539 S32: 0.1413 S33: 0.0838 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2I80 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000039252. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33377 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 79.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : 0.05200 REMARK 200 FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.17700 REMARK 200 R SYM FOR SHELL (I) : 0.17700 REMARK 200 FOR SHELL : 3.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1EHI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.04100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 TYR A 246 REMARK 465 ASP A 247 REMARK 465 TYR A 248 REMARK 465 LYS A 249 REMARK 465 SER A 250 REMARK 465 LYS A 251 REMARK 465 TYR A 252 REMARK 465 LYS A 253 REMARK 465 ASP A 254 REMARK 465 GLY A 255 REMARK 465 LYS A 256 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 TYR B 246 REMARK 465 ASP B 247 REMARK 465 TYR B 248 REMARK 465 LYS B 249 REMARK 465 SER B 250 REMARK 465 LYS B 251 REMARK 465 TYR B 252 REMARK 465 LYS B 253 REMARK 465 ASP B 254 REMARK 465 GLY B 255 REMARK 465 LYS B 256 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 352 OD1 ASN B 99 1.85 REMARK 500 N GLY B 97 O GLU B 101 2.07 REMARK 500 O PHE A 206 OD1 ASN B 351 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 7 CB CYS A 7 SG -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 152 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 219 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 219 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 14 150.26 -37.53 REMARK 500 ALA A 15 -5.90 -58.58 REMARK 500 ASN A 54 62.52 63.23 REMARK 500 LEU A 67 -112.73 53.15 REMARK 500 LEU A 181 160.54 55.88 REMARK 500 SER A 183 5.31 54.36 REMARK 500 SER A 184 -133.66 -96.95 REMARK 500 ASN A 228 -82.08 -119.99 REMARK 500 ASP A 299 36.14 -97.88 REMARK 500 ASN A 300 26.82 49.77 REMARK 500 PHE A 313 20.75 -141.39 REMARK 500 ALA B 15 41.97 -77.99 REMARK 500 ASN B 45 49.86 -69.00 REMARK 500 ASP B 46 -17.07 -154.78 REMARK 500 GLU B 71 95.60 -50.72 REMARK 500 ALA B 72 -22.68 -37.15 REMARK 500 LEU B 73 166.94 -48.69 REMARK 500 LEU B 94 48.74 -86.41 REMARK 500 PRO B 98 10.58 -53.55 REMARK 500 ASN B 228 -83.63 -125.15 REMARK 500 ASN B 305 -62.64 -92.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 357 SER A 358 145.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G1L A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G1L B 400 DBREF 2I80 A 1 356 UNP Q5HEB7 DDL_STAAC 1 356 DBREF 2I80 B 1 356 UNP Q5HEB7 DDL_STAAC 1 356 SEQADV 2I80 ARG A 357 UNP Q5HEB7 CLONING ARTIFACT SEQADV 2I80 SER A 358 UNP Q5HEB7 CLONING ARTIFACT SEQADV 2I80 HIS A 359 UNP Q5HEB7 CLONING ARTIFACT SEQADV 2I80 HIS A 360 UNP Q5HEB7 CLONING ARTIFACT SEQADV 2I80 ARG B 357 UNP Q5HEB7 CLONING ARTIFACT SEQADV 2I80 SER B 358 UNP Q5HEB7 CLONING ARTIFACT SEQADV 2I80 HIS B 359 UNP Q5HEB7 EXPRESSION TAG SEQADV 2I80 HIS B 360 UNP Q5HEB7 EXPRESSION TAG SEQRES 1 A 360 MET THR LYS GLU ASN ILE CYS ILE VAL PHE GLY GLY LYS SEQRES 2 A 360 SER ALA GLU HIS GLU VAL SER ILE LEU THR ALA GLN ASN SEQRES 3 A 360 VAL LEU ASN ALA ILE ASP LYS ASP LYS TYR HIS VAL ASP SEQRES 4 A 360 ILE ILE TYR ILE THR ASN ASP GLY ASP TRP ARG LYS GLN SEQRES 5 A 360 ASN ASN ILE THR ALA GLU ILE LYS SER THR ASP GLU LEU SEQRES 6 A 360 HIS LEU GLU ASN GLY GLU ALA LEU GLU ILE SER GLN LEU SEQRES 7 A 360 LEU LYS GLU SER SER SER GLY GLN PRO TYR ASP ALA VAL SEQRES 8 A 360 PHE PRO LEU LEU HIS GLY PRO ASN GLY GLU ASP GLY THR SEQRES 9 A 360 ILE GLN GLY LEU PHE GLU VAL LEU ASP VAL PRO TYR VAL SEQRES 10 A 360 GLY ASN GLY VAL LEU SER ALA ALA SER SER MET ASP LYS SEQRES 11 A 360 LEU VAL MET LYS GLN LEU PHE GLU HIS ARG GLY LEU PRO SEQRES 12 A 360 GLN LEU PRO TYR ILE SER PHE LEU ARG SER GLU TYR GLU SEQRES 13 A 360 LYS TYR GLU HIS ASN ILE LEU LYS LEU VAL ASN ASP LYS SEQRES 14 A 360 LEU ASN TYR PRO VAL PHE VAL LYS PRO ALA ASN LEU GLY SEQRES 15 A 360 SER SER VAL GLY ILE SER LYS CYS ASN ASN GLU ALA GLU SEQRES 16 A 360 LEU LYS GLU GLY ILE LYS GLU ALA PHE GLN PHE ASP ARG SEQRES 17 A 360 LYS LEU VAL ILE GLU GLN GLY VAL ASN ALA ARG GLU ILE SEQRES 18 A 360 GLU VAL ALA VAL LEU GLY ASN ASP TYR PRO GLU ALA THR SEQRES 19 A 360 TRP PRO GLY GLU VAL VAL LYS ASP VAL ALA PHE TYR ASP SEQRES 20 A 360 TYR LYS SER LYS TYR LYS ASP GLY LYS VAL GLN LEU GLN SEQRES 21 A 360 ILE PRO ALA ASP LEU ASP GLU ASP VAL GLN LEU THR LEU SEQRES 22 A 360 ARG ASN MET ALA LEU GLU ALA PHE LYS ALA THR ASP CYS SEQRES 23 A 360 SER GLY LEU VAL ARG ALA ASP PHE PHE VAL THR GLU ASP SEQRES 24 A 360 ASN GLN ILE TYR ILE ASN GLU THR ASN ALA MET PRO GLY SEQRES 25 A 360 PHE THR ALA PHE SER MET TYR PRO LYS LEU TRP GLU ASN SEQRES 26 A 360 MET GLY LEU SER TYR PRO GLU LEU ILE THR LYS LEU ILE SEQRES 27 A 360 GLU LEU ALA LYS GLU ARG HIS GLN ASP LYS GLN LYS ASN SEQRES 28 A 360 LYS TYR LYS ILE ASP ARG SER HIS HIS SEQRES 1 B 360 MET THR LYS GLU ASN ILE CYS ILE VAL PHE GLY GLY LYS SEQRES 2 B 360 SER ALA GLU HIS GLU VAL SER ILE LEU THR ALA GLN ASN SEQRES 3 B 360 VAL LEU ASN ALA ILE ASP LYS ASP LYS TYR HIS VAL ASP SEQRES 4 B 360 ILE ILE TYR ILE THR ASN ASP GLY ASP TRP ARG LYS GLN SEQRES 5 B 360 ASN ASN ILE THR ALA GLU ILE LYS SER THR ASP GLU LEU SEQRES 6 B 360 HIS LEU GLU ASN GLY GLU ALA LEU GLU ILE SER GLN LEU SEQRES 7 B 360 LEU LYS GLU SER SER SER GLY GLN PRO TYR ASP ALA VAL SEQRES 8 B 360 PHE PRO LEU LEU HIS GLY PRO ASN GLY GLU ASP GLY THR SEQRES 9 B 360 ILE GLN GLY LEU PHE GLU VAL LEU ASP VAL PRO TYR VAL SEQRES 10 B 360 GLY ASN GLY VAL LEU SER ALA ALA SER SER MET ASP LYS SEQRES 11 B 360 LEU VAL MET LYS GLN LEU PHE GLU HIS ARG GLY LEU PRO SEQRES 12 B 360 GLN LEU PRO TYR ILE SER PHE LEU ARG SER GLU TYR GLU SEQRES 13 B 360 LYS TYR GLU HIS ASN ILE LEU LYS LEU VAL ASN ASP LYS SEQRES 14 B 360 LEU ASN TYR PRO VAL PHE VAL LYS PRO ALA ASN LEU GLY SEQRES 15 B 360 SER SER VAL GLY ILE SER LYS CYS ASN ASN GLU ALA GLU SEQRES 16 B 360 LEU LYS GLU GLY ILE LYS GLU ALA PHE GLN PHE ASP ARG SEQRES 17 B 360 LYS LEU VAL ILE GLU GLN GLY VAL ASN ALA ARG GLU ILE SEQRES 18 B 360 GLU VAL ALA VAL LEU GLY ASN ASP TYR PRO GLU ALA THR SEQRES 19 B 360 TRP PRO GLY GLU VAL VAL LYS ASP VAL ALA PHE TYR ASP SEQRES 20 B 360 TYR LYS SER LYS TYR LYS ASP GLY LYS VAL GLN LEU GLN SEQRES 21 B 360 ILE PRO ALA ASP LEU ASP GLU ASP VAL GLN LEU THR LEU SEQRES 22 B 360 ARG ASN MET ALA LEU GLU ALA PHE LYS ALA THR ASP CYS SEQRES 23 B 360 SER GLY LEU VAL ARG ALA ASP PHE PHE VAL THR GLU ASP SEQRES 24 B 360 ASN GLN ILE TYR ILE ASN GLU THR ASN ALA MET PRO GLY SEQRES 25 B 360 PHE THR ALA PHE SER MET TYR PRO LYS LEU TRP GLU ASN SEQRES 26 B 360 MET GLY LEU SER TYR PRO GLU LEU ILE THR LYS LEU ILE SEQRES 27 B 360 GLU LEU ALA LYS GLU ARG HIS GLN ASP LYS GLN LYS ASN SEQRES 28 B 360 LYS TYR LYS ILE ASP ARG SER HIS HIS HET G1L A 400 36 HET G1L B 400 18 HETNAM G1L 3-CHLORO-2,2-DIMETHYL-N-[4-(TRIFLUOROMETHYL) HETNAM 2 G1L PHENYL]PROPANAMIDE FORMUL 3 G1L 2(C12 H13 CL F3 N O) FORMUL 5 HOH *80(H2 O) HELIX 1 1 GLU A 16 ALA A 30 1 15 HELIX 2 2 SER A 61 LEU A 65 5 5 HELIX 3 3 HIS A 66 GLY A 70 5 5 HELIX 4 4 SER A 76 GLU A 81 5 6 HELIX 5 5 GLY A 103 LEU A 112 1 10 HELIX 6 6 GLY A 120 MET A 128 1 9 HELIX 7 7 ASP A 129 ARG A 140 1 12 HELIX 8 8 ARG A 152 LEU A 170 1 19 HELIX 9 9 ASN A 192 PHE A 204 1 13 HELIX 10 10 ASP A 266 THR A 284 1 19 HELIX 11 11 SER A 317 ASN A 325 1 9 HELIX 12 12 SER A 329 ARG A 357 1 29 HELIX 13 13 GLU B 16 ILE B 31 1 16 HELIX 14 14 SER B 61 HIS B 66 5 6 HELIX 15 15 GLU B 74 GLU B 81 1 8 HELIX 16 16 GLY B 103 ASP B 113 1 11 HELIX 17 17 GLY B 120 ASP B 129 1 10 HELIX 18 18 ASP B 129 GLY B 141 1 13 HELIX 19 19 ARG B 152 LEU B 170 1 19 HELIX 20 20 ASN B 192 GLN B 205 1 14 HELIX 21 21 ASP B 266 THR B 284 1 19 HELIX 22 22 SER B 317 MET B 326 1 10 HELIX 23 23 SER B 329 HIS B 360 1 32 SHEET 1 A 5 GLU A 71 LEU A 73 0 SHEET 2 A 5 TRP A 49 GLN A 52 -1 N LYS A 51 O GLU A 71 SHEET 3 A 5 TYR A 36 ILE A 43 -1 N ILE A 40 O GLN A 52 SHEET 4 A 5 GLU A 4 GLY A 11 1 N GLU A 4 O HIS A 37 SHEET 5 A 5 ALA A 90 LEU A 94 1 O PHE A 92 N VAL A 9 SHEET 1 B 4 TYR A 147 LEU A 151 0 SHEET 2 B 4 LYS A 209 GLN A 214 -1 O ILE A 212 N ILE A 148 SHEET 3 B 4 VAL A 174 PRO A 178 -1 N PHE A 175 O GLU A 213 SHEET 4 B 4 SER A 188 CYS A 190 -1 O CYS A 190 N VAL A 174 SHEET 1 C 4 GLU A 232 ALA A 233 0 SHEET 2 C 4 ARG A 219 GLY A 227 -1 N LEU A 226 O GLU A 232 SHEET 3 C 4 GLY A 237 VAL A 239 -1 O GLY A 237 N GLU A 222 SHEET 4 C 4 LEU A 259 GLN A 260 -1 O GLN A 260 N GLU A 238 SHEET 1 D 4 GLU A 232 ALA A 233 0 SHEET 2 D 4 ARG A 219 GLY A 227 -1 N LEU A 226 O GLU A 232 SHEET 3 D 4 GLY A 288 VAL A 296 -1 O PHE A 294 N ILE A 221 SHEET 4 D 4 ILE A 302 ASN A 308 -1 O TYR A 303 N PHE A 295 SHEET 1 E 4 TRP B 49 GLN B 52 0 SHEET 2 E 4 TYR B 36 ILE B 43 -1 N TYR B 42 O ARG B 50 SHEET 3 E 4 GLU B 4 GLY B 11 1 N GLU B 4 O HIS B 37 SHEET 4 E 4 ALA B 90 PRO B 93 1 O PHE B 92 N VAL B 9 SHEET 1 F 4 TYR B 147 LEU B 151 0 SHEET 2 F 4 LYS B 209 GLN B 214 -1 O ILE B 212 N ILE B 148 SHEET 3 F 4 VAL B 174 PRO B 178 -1 N PHE B 175 O GLU B 213 SHEET 4 F 4 SER B 188 CYS B 190 -1 O CYS B 190 N VAL B 174 SHEET 1 G 4 GLU B 232 ALA B 233 0 SHEET 2 G 4 ARG B 219 GLY B 227 -1 N LEU B 226 O GLU B 232 SHEET 3 G 4 GLY B 237 VAL B 239 -1 O GLY B 237 N GLU B 222 SHEET 4 G 4 LEU B 259 GLN B 260 -1 O GLN B 260 N GLU B 238 SHEET 1 H 4 GLU B 232 ALA B 233 0 SHEET 2 H 4 ARG B 219 GLY B 227 -1 N LEU B 226 O GLU B 232 SHEET 3 H 4 GLY B 288 VAL B 296 -1 O PHE B 294 N ILE B 221 SHEET 4 H 4 ILE B 302 ASN B 308 -1 O TYR B 303 N PHE B 295 CISPEP 1 TYR A 172 PRO A 173 0 -5.08 CISPEP 2 ILE A 261 PRO A 262 0 -0.34 CISPEP 3 TYR B 172 PRO B 173 0 -7.21 CISPEP 4 ILE B 261 PRO B 262 0 -0.56 SITE 1 AC1 14 SER A 20 THR A 23 PHE A 92 PRO A 93 SITE 2 AC1 14 LEU A 94 LEU A 95 HIS A 96 VAL A 117 SITE 3 AC1 14 GLY A 118 LEU A 289 MET A 310 PRO A 311 SITE 4 AC1 14 GLY A 312 HOH A 414 SITE 1 AC2 11 GLU B 16 PHE B 92 PRO B 93 LEU B 94 SITE 2 AC2 11 LEU B 95 HIS B 96 VAL B 117 GLY B 118 SITE 3 AC2 11 LEU B 289 MET B 310 PRO B 311 CRYST1 67.730 66.082 78.789 90.00 96.57 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014765 0.000000 0.001700 0.00000 SCALE2 0.000000 0.015133 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012776 0.00000