data_2ICP # _entry.id 2ICP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.313 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2ICP RCSB RCSB039418 WWPDB D_1000039418 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id ER390 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2ICP _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-09-13 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Arbing, M.A.' 1 'Abashidze, M.' 2 'Hurley, J.M.' 3 'Zhao, L.' 4 'Janjua, H.' 5 'Cunningham, K.' 6 'Ma, L.C.' 7 'Xiao, R.' 8 'Liu, J.' 9 'Baran, M.C.' 10 'Acton, T.B.' 11 'Rost, B.' 12 'Inouye, M.' 13 'Woychik, N.A.' 14 'Montelione, G.T.' 15 'Hunt, J.F.' 16 'Northeast Structural Genomics Consortium (NESG)' 17 # _citation.id primary _citation.title 'Crystal structure of the bacterial antitoxin HigA from Escherichia coli.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Arbing, M.A.' 1 ? primary 'Abashidze, M.' 2 ? primary 'Hurley, J.M.' 3 ? primary 'Zhao, L.' 4 ? primary 'Janjua, H.' 5 ? primary 'Cunningham, K.' 6 ? primary 'Ma, L.C.' 7 ? primary 'Xiao, R.' 8 ? primary 'Liu, J.' 9 ? primary 'Baran, M.C.' 10 ? primary 'Acton, T.B.' 11 ? primary 'Rost, B.' 12 ? primary 'Inouye, M.' 13 ? primary 'Woychik, N.A.' 14 ? primary 'Montelione, G.T.' 15 ? primary 'Hunt, J.F.' 16 ? # _cell.entry_id 2ICP _cell.length_a 83.127 _cell.length_b 23.526 _cell.length_c 41.593 _cell.angle_alpha 90.00 _cell.angle_beta 94.05 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ICP _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'antitoxin higa' 10647.538 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 water nat water 18.015 74 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Putative HTH-type transcriptional regulator yddM' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)K(MSE)ANHPRPGDIIQESLDELNVSLREFARA(MSE)EIAPSTASRLLTGKAALTPE(MSE)AIKLSVVIGSSP Q(MSE)WLNLQNAWSLAEAEKTVDVSRLRRLVTQ ; _entity_poly.pdbx_seq_one_letter_code_can ;MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAE KTVDVSRLRRLVTQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ER390 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 LYS n 1 3 MSE n 1 4 ALA n 1 5 ASN n 1 6 HIS n 1 7 PRO n 1 8 ARG n 1 9 PRO n 1 10 GLY n 1 11 ASP n 1 12 ILE n 1 13 ILE n 1 14 GLN n 1 15 GLU n 1 16 SER n 1 17 LEU n 1 18 ASP n 1 19 GLU n 1 20 LEU n 1 21 ASN n 1 22 VAL n 1 23 SER n 1 24 LEU n 1 25 ARG n 1 26 GLU n 1 27 PHE n 1 28 ALA n 1 29 ARG n 1 30 ALA n 1 31 MSE n 1 32 GLU n 1 33 ILE n 1 34 ALA n 1 35 PRO n 1 36 SER n 1 37 THR n 1 38 ALA n 1 39 SER n 1 40 ARG n 1 41 LEU n 1 42 LEU n 1 43 THR n 1 44 GLY n 1 45 LYS n 1 46 ALA n 1 47 ALA n 1 48 LEU n 1 49 THR n 1 50 PRO n 1 51 GLU n 1 52 MSE n 1 53 ALA n 1 54 ILE n 1 55 LYS n 1 56 LEU n 1 57 SER n 1 58 VAL n 1 59 VAL n 1 60 ILE n 1 61 GLY n 1 62 SER n 1 63 SER n 1 64 PRO n 1 65 GLN n 1 66 MSE n 1 67 TRP n 1 68 LEU n 1 69 ASN n 1 70 LEU n 1 71 GLN n 1 72 ASN n 1 73 ALA n 1 74 TRP n 1 75 SER n 1 76 LEU n 1 77 ALA n 1 78 GLU n 1 79 ALA n 1 80 GLU n 1 81 LYS n 1 82 THR n 1 83 VAL n 1 84 ASP n 1 85 VAL n 1 86 SER n 1 87 ARG n 1 88 LEU n 1 89 ARG n 1 90 ARG n 1 91 LEU n 1 92 VAL n 1 93 THR n 1 94 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene higa _entity_src_gen.gene_src_species 'Escherichia coli' _entity_src_gen.gene_src_strain CFT073 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 199310 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)+ MAGIC' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-HigA _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YDDM_ECOLI _struct_ref.pdbx_db_accession P67699 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2ICP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 94 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P67699 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 94 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 94 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2ICP MSE A 1 ? UNP P67699 MET 1 'MODIFIED RESIDUE' 1 1 1 2ICP MSE A 3 ? UNP P67699 MET 3 'MODIFIED RESIDUE' 3 2 1 2ICP MSE A 31 ? UNP P67699 MET 31 'MODIFIED RESIDUE' 31 3 1 2ICP MSE A 52 ? UNP P67699 MET 52 'MODIFIED RESIDUE' 52 4 1 2ICP MSE A 66 ? UNP P67699 MET 66 'MODIFIED RESIDUE' 66 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2ICP _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.85 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 33.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '200 mM MgCl2, 20% PEG 20K, 100 mM Na3Citrate pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2005-05-17 _diffrn_detector.details Osmic # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2ICP _reflns.d_resolution_high 1.880 _reflns.d_resolution_low 60.000 _reflns.number_obs 11592 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_netI_over_sigmaI 18.400 _reflns.pdbx_chi_squared 1.047 _reflns.pdbx_redundancy 2.500 _reflns.percent_possible_obs 90.800 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.88 1.91 ? ? ? 0.174 ? ? 1.070 1.50 ? 341 55.10 1 1 1.91 1.95 ? ? ? 0.189 ? ? 1.084 1.80 ? 458 69.10 2 1 1.95 1.98 ? ? ? 0.165 ? ? 0.986 2.00 ? 529 83.80 3 1 1.98 2.03 ? ? ? 0.15 ? ? 1.001 2.20 ? 535 87.70 4 1 2.03 2.07 ? ? ? 0.137 ? ? 1.046 2.30 ? 605 89.00 5 1 2.07 2.12 ? ? ? 0.124 ? ? 1.101 2.40 ? 555 88.70 6 1 2.12 2.17 ? ? ? 0.103 ? ? 1.157 2.50 ? 611 93.00 7 1 2.17 2.23 ? ? ? 0.089 ? ? 1.048 2.50 ? 571 94.90 8 1 2.23 2.29 ? ? ? 0.089 ? ? 1.124 2.60 ? 608 93.10 9 1 2.29 2.37 ? ? ? 0.083 ? ? 1.153 2.60 ? 586 90.90 10 1 2.37 2.45 ? ? ? 0.08 ? ? 1.105 2.60 ? 586 97.70 11 1 2.45 2.55 ? ? ? 0.069 ? ? 0.989 2.60 ? 643 96.40 12 1 2.55 2.67 ? ? ? 0.064 ? ? 1.056 2.70 ? 610 94.00 13 1 2.67 2.81 ? ? ? 0.052 ? ? 1.006 2.70 ? 599 98.50 14 1 2.81 2.98 ? ? ? 0.058 ? ? 1.118 2.70 ? 639 95.50 15 1 2.98 3.21 ? ? ? 0.048 ? ? 1.061 2.80 ? 632 99.50 16 1 3.21 3.54 ? ? ? 0.038 ? ? 0.995 2.70 ? 605 97.30 17 1 3.54 4.05 ? ? ? 0.037 ? ? 0.987 2.70 ? 626 97.40 18 1 4.05 5.10 ? ? ? 0.032 ? ? 0.903 2.80 ? 630 98.40 19 1 5.10 60.00 ? ? ? 0.03 ? ? 0.997 2.80 ? 623 97.00 20 1 # _refine.entry_id 2ICP _refine.ls_d_res_high 1.880 _refine.ls_d_res_low 40.000 _refine.pdbx_ls_sigma_F 812.00 _refine.ls_percent_reflns_obs 82.000 _refine.ls_number_reflns_obs 10485 _refine.ls_R_factor_R_work 0.184 _refine.ls_R_factor_R_free 0.225 _refine.ls_percent_reflns_R_free 8.100 _refine.ls_number_reflns_R_free 1036 _refine.B_iso_mean 23.711 _refine.solvent_model_param_bsol 71.638 _refine.aniso_B[1][1] -1.064 _refine.aniso_B[2][2] 2.313 _refine.aniso_B[3][3] -1.249 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -2.349 _refine.aniso_B[2][3] 0.000 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 672 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 74 _refine_hist.number_atoms_total 747 _refine_hist.d_res_high 1.880 _refine_hist.d_res_low 40.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_mcbond_it ? 1.783 1.500 ? 'X-RAY DIFFRACTION' ? c_scbond_it ? 3.875 2.000 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? 2.769 2.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it ? 6.222 2.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.88 _refine_ls_shell.d_res_low 1.91 _refine_ls_shell.number_reflns_obs 209 _refine_ls_shell.number_reflns_R_free 21 _refine_ls_shell.R_factor_R_work 0.267 _refine_ls_shell.R_factor_R_free 0.351 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param ? 'X-RAY DIFFRACTION' 2 water_rep.param ? 'X-RAY DIFFRACTION' 3 ion.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 2ICP _struct.title ;Crystal structure of the bacterial antitoxin HigA from Escherichia coli at pH 4.0. Northeast Structural Genomics Consortium TARGET ER390. ; _struct.pdbx_descriptor 'Putative HTH-type transcriptional regulator yddM' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ICP _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text ;helix-turn-helix, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, DNA BINDING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 8 ? ASN A 21 ? ARG A 8 ASN A 21 1 ? 14 HELX_P HELX_P2 2 SER A 23 ? GLU A 32 ? SER A 23 GLU A 32 1 ? 10 HELX_P HELX_P3 3 ALA A 34 ? THR A 43 ? ALA A 34 THR A 43 1 ? 10 HELX_P HELX_P4 4 THR A 49 ? ILE A 60 ? THR A 49 ILE A 60 1 ? 12 HELX_P HELX_P5 5 SER A 63 ? LYS A 81 ? SER A 63 LYS A 81 1 ? 19 HELX_P HELX_P6 6 THR A 82 ? VAL A 83 ? THR A 82 VAL A 83 5 ? 2 HELX_P HELX_P7 7 ASP A 84 ? LEU A 88 ? ASP A 84 LEU A 88 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ALA 30 C ? ? ? 1_555 A MSE 31 N ? ? A ALA 30 A MSE 31 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale both ? A MSE 31 C ? ? ? 1_555 A GLU 32 N ? ? A MSE 31 A GLU 32 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale both ? A GLU 51 C ? ? ? 1_555 A MSE 52 N ? ? A GLU 51 A MSE 52 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale both ? A MSE 52 C ? ? ? 1_555 A ALA 53 N ? ? A MSE 52 A ALA 53 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale both ? A GLN 65 C ? ? ? 1_555 A MSE 66 N ? ? A GLN 65 A MSE 66 1_555 ? ? ? ? ? ? ? 1.332 ? covale6 covale both ? A MSE 66 C ? ? ? 1_555 A TRP 67 N ? ? A MSE 66 A TRP 67 1_555 ? ? ? ? ? ? ? 1.329 ? metalc1 metalc ? ? B MG . MG ? ? ? 1_555 A THR 37 OG1 ? ? A MG 5001 A THR 37 1_555 ? ? ? ? ? ? ? 3.127 ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 5001 A HOH 3040 3_445 ? ? ? ? ? ? ? 3.132 ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 A SER 62 N ? ? A MG 5001 A SER 62 1_545 ? ? ? ? ? ? ? 3.099 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE MG A 5001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ALA A 34 ? ALA A 34 . ? 1_555 ? 2 AC1 4 THR A 37 ? THR A 37 . ? 1_555 ? 3 AC1 4 SER A 62 ? SER A 62 . ? 1_545 ? 4 AC1 4 SER A 86 ? SER A 86 . ? 3_445 ? # _atom_sites.entry_id 2ICP _atom_sites.fract_transf_matrix[1][1] 0.012030 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000852 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.042506 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024103 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 LYS 2 2 ? ? ? A . n A 1 3 MSE 3 3 ? ? ? A . n A 1 4 ALA 4 4 ? ? ? A . n A 1 5 ASN 5 5 ? ? ? A . n A 1 6 HIS 6 6 ? ? ? A . n A 1 7 PRO 7 7 ? ? ? A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 MSE 31 31 31 MSE MSE A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 MSE 52 52 52 MSE MSE A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 PRO 64 64 64 PRO PRO A . n A 1 65 GLN 65 65 65 GLN GLN A . n A 1 66 MSE 66 66 66 MSE MSE A . n A 1 67 TRP 67 67 67 TRP TRP A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 TRP 74 74 74 TRP TRP A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 GLN 94 94 94 GLN GLN A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 5001 5001 MG MG A . C 3 HOH 1 3001 3001 HOH HOH A . C 3 HOH 2 3002 3002 HOH HOH A . C 3 HOH 3 3003 3003 HOH HOH A . C 3 HOH 4 3004 3004 HOH HOH A . C 3 HOH 5 3005 3005 HOH HOH A . C 3 HOH 6 3006 3006 HOH HOH A . C 3 HOH 7 3007 3007 HOH HOH A . C 3 HOH 8 3008 3008 HOH HOH A . C 3 HOH 9 3009 3009 HOH HOH A . C 3 HOH 10 3010 3010 HOH HOH A . C 3 HOH 11 3011 3011 HOH HOH A . C 3 HOH 12 3012 3012 HOH HOH A . C 3 HOH 13 3013 3013 HOH HOH A . C 3 HOH 14 3014 3014 HOH HOH A . C 3 HOH 15 3015 3015 HOH HOH A . C 3 HOH 16 3016 3016 HOH HOH A . C 3 HOH 17 3017 3017 HOH HOH A . C 3 HOH 18 3018 3018 HOH HOH A . C 3 HOH 19 3019 3019 HOH HOH A . C 3 HOH 20 3020 3020 HOH HOH A . C 3 HOH 21 3021 3021 HOH HOH A . C 3 HOH 22 3022 3022 HOH HOH A . C 3 HOH 23 3023 3023 HOH HOH A . C 3 HOH 24 3024 3024 HOH HOH A . C 3 HOH 25 3025 3025 HOH HOH A . C 3 HOH 26 3026 3026 HOH HOH A . C 3 HOH 27 3027 3027 HOH HOH A . C 3 HOH 28 3028 3028 HOH HOH A . C 3 HOH 29 3029 3029 HOH HOH A . C 3 HOH 30 3030 3030 HOH HOH A . C 3 HOH 31 3031 3031 HOH HOH A . C 3 HOH 32 3032 3032 HOH HOH A . C 3 HOH 33 3033 3033 HOH HOH A . C 3 HOH 34 3034 3034 HOH HOH A . C 3 HOH 35 3035 3035 HOH HOH A . C 3 HOH 36 3036 3036 HOH HOH A . C 3 HOH 37 3037 3037 HOH HOH A . C 3 HOH 38 3038 3038 HOH HOH A . C 3 HOH 39 3039 3039 HOH HOH A . C 3 HOH 40 3040 3040 HOH HOH A . C 3 HOH 41 3041 3041 HOH HOH A . C 3 HOH 42 3042 3042 HOH HOH A . C 3 HOH 43 3043 3043 HOH HOH A . C 3 HOH 44 3044 3044 HOH HOH A . C 3 HOH 45 3045 3045 HOH HOH A . C 3 HOH 46 3046 3046 HOH HOH A . C 3 HOH 47 3047 3047 HOH HOH A . C 3 HOH 48 3048 3048 HOH HOH A . C 3 HOH 49 3049 3049 HOH HOH A . C 3 HOH 50 3050 3050 HOH HOH A . C 3 HOH 51 3051 3051 HOH HOH A . C 3 HOH 52 3052 3052 HOH HOH A . C 3 HOH 53 3053 3053 HOH HOH A . C 3 HOH 54 3054 3054 HOH HOH A . C 3 HOH 55 3055 3055 HOH HOH A . C 3 HOH 56 3056 3056 HOH HOH A . C 3 HOH 57 3057 3057 HOH HOH A . C 3 HOH 58 3058 3058 HOH HOH A . C 3 HOH 59 3059 3059 HOH HOH A . C 3 HOH 60 3060 3060 HOH HOH A . C 3 HOH 61 3061 3061 HOH HOH A . C 3 HOH 62 3062 3062 HOH HOH A . C 3 HOH 63 3063 3063 HOH HOH A . C 3 HOH 64 3064 3064 HOH HOH A . C 3 HOH 65 3065 3065 HOH HOH A . C 3 HOH 66 3066 3066 HOH HOH A . C 3 HOH 67 3067 3067 HOH HOH A . C 3 HOH 68 3068 3068 HOH HOH A . C 3 HOH 69 3069 3069 HOH HOH A . C 3 HOH 70 3070 3070 HOH HOH A . C 3 HOH 71 3071 3071 HOH HOH A . C 3 HOH 72 3072 3072 HOH HOH A . C 3 HOH 73 3073 3073 HOH HOH A . C 3 HOH 74 3074 3074 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 31 A MSE 31 ? MET SELENOMETHIONINE 2 A MSE 52 A MSE 52 ? MET SELENOMETHIONINE 3 A MSE 66 A MSE 66 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA,PQS dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C 2 1,2 A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 3340 ? 2 MORE -30 ? 2 'SSA (A^2)' 9550 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 83.1270000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG1 ? A THR 37 ? A THR 37 ? 1_555 MG ? B MG . ? A MG 5001 ? 1_555 O ? C HOH . ? A HOH 3040 ? 3_445 100.3 ? 2 OG1 ? A THR 37 ? A THR 37 ? 1_555 MG ? B MG . ? A MG 5001 ? 1_555 N ? A SER 62 ? A SER 62 ? 1_545 67.9 ? 3 O ? C HOH . ? A HOH 3040 ? 3_445 MG ? B MG . ? A MG 5001 ? 1_555 N ? A SER 62 ? A SER 62 ? 1_545 96.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-26 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2019-07-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' software 3 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_software.classification' 2 5 'Structure model' '_software.contact_author' 3 5 'Structure model' '_software.contact_author_email' 4 5 'Structure model' '_software.location' 5 5 'Structure model' '_software.name' 6 5 'Structure model' '_software.type' 7 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.880 _diffrn_reflns.pdbx_d_res_low 60.000 _diffrn_reflns.pdbx_number_obs 11592 _diffrn_reflns.pdbx_Rmerge_I_obs 0.049 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.05 _diffrn_reflns.av_sigmaI_over_netI 18.40 _diffrn_reflns.pdbx_redundancy 2.50 _diffrn_reflns.pdbx_percent_possible_obs 90.80 _diffrn_reflns.number 29182 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 5.10 60.00 ? ? 0.030 ? 0.997 2.80 97.00 1 4.05 5.10 ? ? 0.032 ? 0.903 2.80 98.40 1 3.54 4.05 ? ? 0.037 ? 0.987 2.70 97.40 1 3.21 3.54 ? ? 0.038 ? 0.995 2.70 97.30 1 2.98 3.21 ? ? 0.048 ? 1.061 2.80 99.50 1 2.81 2.98 ? ? 0.058 ? 1.118 2.70 95.50 1 2.67 2.81 ? ? 0.052 ? 1.006 2.70 98.50 1 2.55 2.67 ? ? 0.064 ? 1.056 2.70 94.00 1 2.45 2.55 ? ? 0.069 ? 0.989 2.60 96.40 1 2.37 2.45 ? ? 0.080 ? 1.105 2.60 97.70 1 2.29 2.37 ? ? 0.083 ? 1.153 2.60 90.90 1 2.23 2.29 ? ? 0.089 ? 1.124 2.60 93.10 1 2.17 2.23 ? ? 0.089 ? 1.048 2.50 94.90 1 2.12 2.17 ? ? 0.103 ? 1.157 2.50 93.00 1 2.07 2.12 ? ? 0.124 ? 1.101 2.40 88.70 1 2.03 2.07 ? ? 0.137 ? 1.046 2.30 89.00 1 1.98 2.03 ? ? 0.150 ? 1.001 2.20 87.70 1 1.95 1.98 ? ? 0.165 ? 0.986 2.00 83.80 1 1.91 1.95 ? ? 0.189 ? 1.084 1.80 69.10 1 1.88 1.91 ? ? 0.174 ? 1.070 1.50 55.10 # _pdbx_phasing_MR.entry_id 2ICP _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor 42.700 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc 39.070 _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 4.000 _pdbx_phasing_MR.d_res_low_rotation 15.000 _pdbx_phasing_MR.d_res_high_translation 4.000 _pdbx_phasing_MR.d_res_low_translation 15.000 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal CNS . ? ? ? ? refinement ? ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 COMO 1.2 05/01 package 'L. Tong' tong@como.bio.columbia.edu phasing http://como.bio.columbia.edu/tong/Public/Como/como.html ? ? 3 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 6 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NH1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ARG _pdbx_validate_close_contact.auth_seq_id_1 8 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 3021 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.88 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 62 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 62.90 _pdbx_validate_torsion.psi -167.52 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A LYS 2 ? A LYS 2 3 1 Y 1 A MSE 3 ? A MSE 3 4 1 Y 1 A ALA 4 ? A ALA 4 5 1 Y 1 A ASN 5 ? A ASN 5 6 1 Y 1 A HIS 6 ? A HIS 6 7 1 Y 1 A PRO 7 ? A PRO 7 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH #