data_2IF9 # _entry.id 2IF9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2IF9 pdb_00002if9 10.2210/pdb2if9/pdb RCSB RCSB039509 ? ? WWPDB D_1000039509 ? ? # _pdbx_database_status.entry_id 2IF9 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-09-20 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Meinke, G.' 1 'Bullock, P.A.' 2 'Bohm, A.' 3 # _citation.id primary _citation.title 'The Crystal Structure of the SV40 T-Antigen Origin Binding Domain in Complex with DNA' _citation.journal_abbrev 'Plos Biol.' _citation.journal_volume 5 _citation.page_first e23 _citation.page_last e23 _citation.year 2007 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1544-9173 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17253903 _citation.pdbx_database_id_DOI 10.1371/journal.pbio.0050023 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Meinke, G.' 1 ? primary 'Phelan, P.' 2 ? primary 'Moine, S.' 3 ? primary 'Bochkareva, E.' 4 ? primary 'Bochkarev, A.' 5 ? primary 'Bullock, P.A.' 6 ? primary 'Bohm, A.' 7 ? # _cell.length_a 68.463 _cell.length_b 63.982 _cell.length_c 63.228 _cell.angle_alpha 90.000 _cell.angle_beta 94.450 _cell.angle_gamma 90.000 _cell.entry_id 2IF9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 2IF9 _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Large T antigen' 15414.633 2 ? ? 'origin binding domain' ? 2 water nat water 18.015 51 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSKVEDPKDFPSELLSFLSHAVFSNRTLACFAIYTTKEKAALLYKKIMEKYSVTFISRHNSYNHNILFFLTPHRHRVSAI NNYAQKLCTFSFLICKGVNKEYLMYSALTRDPFSVIEESLPGGLKEHDFNPESS ; _entity_poly.pdbx_seq_one_letter_code_can ;GSKVEDPKDFPSELLSFLSHAVFSNRTLACFAIYTTKEKAALLYKKIMEKYSVTFISRHNSYNHNILFFLTPHRHRVSAI NNYAQKLCTFSFLICKGVNKEYLMYSALTRDPFSVIEESLPGGLKEHDFNPESS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 LYS n 1 4 VAL n 1 5 GLU n 1 6 ASP n 1 7 PRO n 1 8 LYS n 1 9 ASP n 1 10 PHE n 1 11 PRO n 1 12 SER n 1 13 GLU n 1 14 LEU n 1 15 LEU n 1 16 SER n 1 17 PHE n 1 18 LEU n 1 19 SER n 1 20 HIS n 1 21 ALA n 1 22 VAL n 1 23 PHE n 1 24 SER n 1 25 ASN n 1 26 ARG n 1 27 THR n 1 28 LEU n 1 29 ALA n 1 30 CYS n 1 31 PHE n 1 32 ALA n 1 33 ILE n 1 34 TYR n 1 35 THR n 1 36 THR n 1 37 LYS n 1 38 GLU n 1 39 LYS n 1 40 ALA n 1 41 ALA n 1 42 LEU n 1 43 LEU n 1 44 TYR n 1 45 LYS n 1 46 LYS n 1 47 ILE n 1 48 MET n 1 49 GLU n 1 50 LYS n 1 51 TYR n 1 52 SER n 1 53 VAL n 1 54 THR n 1 55 PHE n 1 56 ILE n 1 57 SER n 1 58 ARG n 1 59 HIS n 1 60 ASN n 1 61 SER n 1 62 TYR n 1 63 ASN n 1 64 HIS n 1 65 ASN n 1 66 ILE n 1 67 LEU n 1 68 PHE n 1 69 PHE n 1 70 LEU n 1 71 THR n 1 72 PRO n 1 73 HIS n 1 74 ARG n 1 75 HIS n 1 76 ARG n 1 77 VAL n 1 78 SER n 1 79 ALA n 1 80 ILE n 1 81 ASN n 1 82 ASN n 1 83 TYR n 1 84 ALA n 1 85 GLN n 1 86 LYS n 1 87 LEU n 1 88 CYS n 1 89 THR n 1 90 PHE n 1 91 SER n 1 92 PHE n 1 93 LEU n 1 94 ILE n 1 95 CYS n 1 96 LYS n 1 97 GLY n 1 98 VAL n 1 99 ASN n 1 100 LYS n 1 101 GLU n 1 102 TYR n 1 103 LEU n 1 104 MET n 1 105 TYR n 1 106 SER n 1 107 ALA n 1 108 LEU n 1 109 THR n 1 110 ARG n 1 111 ASP n 1 112 PRO n 1 113 PHE n 1 114 SER n 1 115 VAL n 1 116 ILE n 1 117 GLU n 1 118 GLU n 1 119 SER n 1 120 LEU n 1 121 PRO n 1 122 GLY n 1 123 GLY n 1 124 LEU n 1 125 LYS n 1 126 GLU n 1 127 HIS n 1 128 ASP n 1 129 PHE n 1 130 ASN n 1 131 PRO n 1 132 GLU n 1 133 SER n 1 134 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Polyomavirus _entity_src_gen.pdbx_gene_src_gene 'large T-antigen' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Simian virus 40' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10633 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-1lT _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code TALA_SV40 _struct_ref.pdbx_db_accession P03070 _struct_ref.pdbx_align_begin 131 _struct_ref.pdbx_seq_one_letter_code ;KVEDPKDFPSELLSFLSHAVFSNRTLACFAIYTTKEKAALLYKKIMEKYSVTFISRHNSYNHNILFFLTPHRHRVSAINN YAQKLCTFSFLICKGVNKEYLMYSALTRDPFSVIEESLPGGLKEHDFNPE ; _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2IF9 A 3 ? 132 ? P03070 131 ? 260 ? 131 260 2 1 2IF9 B 3 ? 132 ? P03070 131 ? 260 ? 131 260 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2IF9 GLY A 1 ? UNP P03070 ? ? 'cloning artifact' 129 1 1 2IF9 SER A 2 ? UNP P03070 ? ? 'cloning artifact' 130 2 1 2IF9 SER A 133 ? UNP P03070 ? ? 'cloning artifact' 261 3 1 2IF9 SER A 134 ? UNP P03070 ? ? 'cloning artifact' 262 4 2 2IF9 GLY B 1 ? UNP P03070 ? ? 'cloning artifact' 129 5 2 2IF9 SER B 2 ? UNP P03070 ? ? 'cloning artifact' 130 6 2 2IF9 SER B 133 ? UNP P03070 ? ? 'cloning artifact' 261 7 2 2IF9 SER B 134 ? UNP P03070 ? ? 'cloning artifact' 262 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2IF9 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_percent_sol 45.05 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '30 % peg 4000, 0.1M sodium citrate (pH 5.6), 0.2 M ammonium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ADSC _diffrn_detector.pdbx_collection_date 2005-09-15 _diffrn_detector.details 'Quantum 315' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_wavelength_list 0.9791 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A # _reflns.entry_id 2IF9 _reflns.d_resolution_high 2.586 _reflns.d_resolution_low 50.000 _reflns.number_obs 7009 _reflns.pdbx_Rmerge_I_obs 0.126 _reflns.pdbx_netI_over_sigmaI 7.700 _reflns.pdbx_chi_squared 1.645 _reflns.pdbx_redundancy 3.000 _reflns.percent_possible_obs 85.100 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 7348 _reflns.pdbx_Rsym_value 0.126 _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.586 _reflns_shell.d_res_low 2.69 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.215 _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.pdbx_Rsym_value 0.215 _reflns_shell.pdbx_chi_squared 0.940 _reflns_shell.pdbx_redundancy 2.40 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 458 _reflns_shell.percent_possible_all 53.30 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2IF9 _refine.ls_d_res_high 2.586 _refine.ls_d_res_low 38.630 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 85.220 _refine.ls_number_reflns_obs 7009 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_all 0.213 _refine.ls_R_factor_R_work 0.208 _refine.ls_R_factor_R_free 0.296 _refine.ls_percent_reflns_R_free 4.600 _refine.ls_number_reflns_R_free 336 _refine.B_iso_mean 28.493 _refine.aniso_B[1][1] 0.170 _refine.aniso_B[2][2] -0.080 _refine.aniso_B[3][3] -0.100 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.020 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.918 _refine.correlation_coeff_Fo_to_Fc_free 0.857 _refine.pdbx_overall_ESU_R_Free 0.459 _refine.overall_SU_ML 0.342 _refine.overall_SU_B 15.672 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 7345 _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 2FUF _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2144 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 51 _refine_hist.number_atoms_total 2195 _refine_hist.d_res_high 2.586 _refine_hist.d_res_low 38.630 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2209 0.012 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2986 1.463 1.941 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 263 7.905 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 103 33.413 23.398 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 382 17.722 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10 19.714 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 325 0.098 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1668 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 1128 0.231 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1501 0.315 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 107 0.193 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 53 0.203 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 9 0.136 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1354 0.616 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2147 1.105 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 957 1.506 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 839 2.377 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.586 _refine_ls_shell.d_res_low 2.653 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 54.270 _refine_ls_shell.number_reflns_R_work 321 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.216 _refine_ls_shell.R_factor_R_free 0.453 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 16 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 337 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2IF9 _struct.title 'Crystal Structure of SV40 T-antigen origin binding domain disulfide-linked dimer' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2IF9 _struct_keywords.text 'origin binding domain, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ;Full length T-antigen forms monomers, hexamers and double hexamers. The biological relevance of the dimer is unclear at the time of publication. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 11 ? LEU A 18 ? PRO A 139 LEU A 146 5 ? 8 HELX_P HELX_P2 2 GLU A 38 ? SER A 52 ? GLU A 166 SER A 180 1 ? 15 HELX_P HELX_P3 3 VAL A 77 ? CYS A 88 ? VAL A 205 CYS A 216 1 ? 12 HELX_P HELX_P4 4 LYS A 100 ? LEU A 108 ? LYS A 228 LEU A 236 1 ? 9 HELX_P HELX_P5 5 LYS A 125 ? ASN A 130 ? LYS A 253 ASN A 258 5 ? 6 HELX_P HELX_P6 6 PRO B 11 ? LEU B 18 ? PRO B 139 LEU B 146 5 ? 8 HELX_P HELX_P7 7 THR B 36 ? SER B 52 ? THR B 164 SER B 180 1 ? 17 HELX_P HELX_P8 8 ARG B 76 ? CYS B 88 ? ARG B 204 CYS B 216 1 ? 13 HELX_P HELX_P9 9 LYS B 100 ? THR B 109 ? LYS B 228 THR B 237 1 ? 10 HELX_P HELX_P10 10 LYS B 125 ? ASN B 130 ? LYS B 253 ASN B 258 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 88 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 88 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 216 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.410 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASP 111 A . ? ASP 239 A PRO 112 A ? PRO 240 A 1 18.52 2 PRO 121 A . ? PRO 249 A GLY 122 A ? GLY 250 A 1 -1.84 3 ASP 111 B . ? ASP 239 B PRO 112 B ? PRO 240 B 1 4.99 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 93 ? GLY A 97 ? LEU A 221 GLY A 225 A 2 THR A 27 ? THR A 35 ? THR A 155 THR A 163 A 3 HIS A 64 ? ARG A 76 ? HIS A 192 ARG A 204 A 4 PHE A 55 ? SER A 61 ? PHE A 183 SER A 189 A 5 PHE A 113 ? GLU A 118 ? PHE A 241 GLU A 246 B 1 LEU B 93 ? GLY B 97 ? LEU B 221 GLY B 225 B 2 LEU B 28 ? THR B 35 ? LEU B 156 THR B 163 B 3 HIS B 64 ? HIS B 75 ? HIS B 192 HIS B 203 B 4 PHE B 55 ? SER B 61 ? PHE B 183 SER B 189 B 5 PHE B 113 ? GLU B 118 ? PHE B 241 GLU B 246 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 94 ? O ILE A 222 N TYR A 34 ? N TYR A 162 A 2 3 N ILE A 33 ? N ILE A 161 O LEU A 67 ? O LEU A 195 A 3 4 O HIS A 64 ? O HIS A 192 N SER A 61 ? N SER A 189 A 4 5 N ARG A 58 ? N ARG A 186 O ILE A 116 ? O ILE A 244 B 1 2 O ILE B 94 ? O ILE B 222 N TYR B 34 ? N TYR B 162 B 2 3 N LEU B 28 ? N LEU B 156 O HIS B 75 ? O HIS B 203 B 3 4 O HIS B 64 ? O HIS B 192 N SER B 61 ? N SER B 189 B 4 5 N ARG B 58 ? N ARG B 186 O ILE B 116 ? O ILE B 244 # _atom_sites.entry_id 2IF9 _atom_sites.fract_transf_matrix[1][1] 0.014606 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001137 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015629 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015864 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 129 129 GLY GLY A . n A 1 2 SER 2 130 130 SER SER A . n A 1 3 LYS 3 131 131 LYS LYS A . n A 1 4 VAL 4 132 132 VAL VAL A . n A 1 5 GLU 5 133 133 GLU GLU A . n A 1 6 ASP 6 134 134 ASP ASP A . n A 1 7 PRO 7 135 135 PRO PRO A . n A 1 8 LYS 8 136 136 LYS LYS A . n A 1 9 ASP 9 137 137 ASP ASP A . n A 1 10 PHE 10 138 138 PHE PHE A . n A 1 11 PRO 11 139 139 PRO PRO A . n A 1 12 SER 12 140 140 SER SER A . n A 1 13 GLU 13 141 141 GLU GLU A . n A 1 14 LEU 14 142 142 LEU LEU A . n A 1 15 LEU 15 143 143 LEU LEU A . n A 1 16 SER 16 144 144 SER SER A . n A 1 17 PHE 17 145 145 PHE PHE A . n A 1 18 LEU 18 146 146 LEU LEU A . n A 1 19 SER 19 147 147 SER SER A . n A 1 20 HIS 20 148 148 HIS HIS A . n A 1 21 ALA 21 149 149 ALA ALA A . n A 1 22 VAL 22 150 150 VAL VAL A . n A 1 23 PHE 23 151 151 PHE PHE A . n A 1 24 SER 24 152 152 SER SER A . n A 1 25 ASN 25 153 153 ASN ASN A . n A 1 26 ARG 26 154 154 ARG ARG A . n A 1 27 THR 27 155 155 THR THR A . n A 1 28 LEU 28 156 156 LEU LEU A . n A 1 29 ALA 29 157 157 ALA ALA A . n A 1 30 CYS 30 158 158 CYS CYS A . n A 1 31 PHE 31 159 159 PHE PHE A . n A 1 32 ALA 32 160 160 ALA ALA A . n A 1 33 ILE 33 161 161 ILE ILE A . n A 1 34 TYR 34 162 162 TYR TYR A . n A 1 35 THR 35 163 163 THR THR A . n A 1 36 THR 36 164 164 THR THR A . n A 1 37 LYS 37 165 165 LYS LYS A . n A 1 38 GLU 38 166 166 GLU GLU A . n A 1 39 LYS 39 167 167 LYS LYS A . n A 1 40 ALA 40 168 168 ALA ALA A . n A 1 41 ALA 41 169 169 ALA ALA A . n A 1 42 LEU 42 170 170 LEU LEU A . n A 1 43 LEU 43 171 171 LEU LEU A . n A 1 44 TYR 44 172 172 TYR TYR A . n A 1 45 LYS 45 173 173 LYS LYS A . n A 1 46 LYS 46 174 174 LYS LYS A . n A 1 47 ILE 47 175 175 ILE ILE A . n A 1 48 MET 48 176 176 MET MET A . n A 1 49 GLU 49 177 177 GLU GLU A . n A 1 50 LYS 50 178 178 LYS LYS A . n A 1 51 TYR 51 179 179 TYR TYR A . n A 1 52 SER 52 180 180 SER SER A . n A 1 53 VAL 53 181 181 VAL VAL A . n A 1 54 THR 54 182 182 THR THR A . n A 1 55 PHE 55 183 183 PHE PHE A . n A 1 56 ILE 56 184 184 ILE ILE A . n A 1 57 SER 57 185 185 SER SER A . n A 1 58 ARG 58 186 186 ARG ARG A . n A 1 59 HIS 59 187 187 HIS HIS A . n A 1 60 ASN 60 188 188 ASN ASN A . n A 1 61 SER 61 189 189 SER SER A . n A 1 62 TYR 62 190 190 TYR TYR A . n A 1 63 ASN 63 191 191 ASN ASN A . n A 1 64 HIS 64 192 192 HIS HIS A . n A 1 65 ASN 65 193 193 ASN ASN A . n A 1 66 ILE 66 194 194 ILE ILE A . n A 1 67 LEU 67 195 195 LEU LEU A . n A 1 68 PHE 68 196 196 PHE PHE A . n A 1 69 PHE 69 197 197 PHE PHE A . n A 1 70 LEU 70 198 198 LEU LEU A . n A 1 71 THR 71 199 199 THR THR A . n A 1 72 PRO 72 200 200 PRO PRO A . n A 1 73 HIS 73 201 201 HIS HIS A . n A 1 74 ARG 74 202 202 ARG ARG A . n A 1 75 HIS 75 203 203 HIS HIS A . n A 1 76 ARG 76 204 204 ARG ARG A . n A 1 77 VAL 77 205 205 VAL VAL A . n A 1 78 SER 78 206 206 SER SER A . n A 1 79 ALA 79 207 207 ALA ALA A . n A 1 80 ILE 80 208 208 ILE ILE A . n A 1 81 ASN 81 209 209 ASN ASN A . n A 1 82 ASN 82 210 210 ASN ASN A . n A 1 83 TYR 83 211 211 TYR TYR A . n A 1 84 ALA 84 212 212 ALA ALA A . n A 1 85 GLN 85 213 213 GLN GLN A . n A 1 86 LYS 86 214 214 LYS LYS A . n A 1 87 LEU 87 215 215 LEU LEU A . n A 1 88 CYS 88 216 216 CYS CYS A . n A 1 89 THR 89 217 217 THR THR A . n A 1 90 PHE 90 218 218 PHE PHE A . n A 1 91 SER 91 219 219 SER SER A . n A 1 92 PHE 92 220 220 PHE PHE A . n A 1 93 LEU 93 221 221 LEU LEU A . n A 1 94 ILE 94 222 222 ILE ILE A . n A 1 95 CYS 95 223 223 CYS CYS A . n A 1 96 LYS 96 224 224 LYS LYS A . n A 1 97 GLY 97 225 225 GLY GLY A . n A 1 98 VAL 98 226 226 VAL VAL A . n A 1 99 ASN 99 227 227 ASN ASN A . n A 1 100 LYS 100 228 228 LYS LYS A . n A 1 101 GLU 101 229 229 GLU GLU A . n A 1 102 TYR 102 230 230 TYR TYR A . n A 1 103 LEU 103 231 231 LEU LEU A . n A 1 104 MET 104 232 232 MET MET A . n A 1 105 TYR 105 233 233 TYR TYR A . n A 1 106 SER 106 234 234 SER SER A . n A 1 107 ALA 107 235 235 ALA ALA A . n A 1 108 LEU 108 236 236 LEU LEU A . n A 1 109 THR 109 237 237 THR THR A . n A 1 110 ARG 110 238 238 ARG ARG A . n A 1 111 ASP 111 239 239 ASP ASP A . n A 1 112 PRO 112 240 240 PRO PRO A . n A 1 113 PHE 113 241 241 PHE PHE A . n A 1 114 SER 114 242 242 SER SER A . n A 1 115 VAL 115 243 243 VAL VAL A . n A 1 116 ILE 116 244 244 ILE ILE A . n A 1 117 GLU 117 245 245 GLU GLU A . n A 1 118 GLU 118 246 246 GLU GLU A . n A 1 119 SER 119 247 247 SER SER A . n A 1 120 LEU 120 248 248 LEU LEU A . n A 1 121 PRO 121 249 249 PRO PRO A . n A 1 122 GLY 122 250 250 GLY GLY A . n A 1 123 GLY 123 251 251 GLY GLY A . n A 1 124 LEU 124 252 252 LEU LEU A . n A 1 125 LYS 125 253 253 LYS LYS A . n A 1 126 GLU 126 254 254 GLU GLU A . n A 1 127 HIS 127 255 255 HIS HIS A . n A 1 128 ASP 128 256 256 ASP ASP A . n A 1 129 PHE 129 257 257 PHE PHE A . n A 1 130 ASN 130 258 258 ASN ASN A . n A 1 131 PRO 131 259 259 PRO PRO A . n A 1 132 GLU 132 260 260 GLU GLU A . n A 1 133 SER 133 261 ? ? ? A . n A 1 134 SER 134 262 ? ? ? A . n B 1 1 GLY 1 129 ? ? ? B . n B 1 2 SER 2 130 130 SER SER B . n B 1 3 LYS 3 131 131 LYS LYS B . n B 1 4 VAL 4 132 132 VAL VAL B . n B 1 5 GLU 5 133 133 GLU GLU B . n B 1 6 ASP 6 134 134 ASP ASP B . n B 1 7 PRO 7 135 135 PRO PRO B . n B 1 8 LYS 8 136 136 LYS LYS B . n B 1 9 ASP 9 137 137 ASP ASP B . n B 1 10 PHE 10 138 138 PHE PHE B . n B 1 11 PRO 11 139 139 PRO PRO B . n B 1 12 SER 12 140 140 SER SER B . n B 1 13 GLU 13 141 141 GLU GLU B . n B 1 14 LEU 14 142 142 LEU LEU B . n B 1 15 LEU 15 143 143 LEU LEU B . n B 1 16 SER 16 144 144 SER SER B . n B 1 17 PHE 17 145 145 PHE PHE B . n B 1 18 LEU 18 146 146 LEU LEU B . n B 1 19 SER 19 147 147 SER SER B . n B 1 20 HIS 20 148 148 HIS HIS B . n B 1 21 ALA 21 149 149 ALA ALA B . n B 1 22 VAL 22 150 150 VAL VAL B . n B 1 23 PHE 23 151 151 PHE PHE B . n B 1 24 SER 24 152 152 SER SER B . n B 1 25 ASN 25 153 153 ASN ASN B . n B 1 26 ARG 26 154 154 ARG ARG B . n B 1 27 THR 27 155 155 THR THR B . n B 1 28 LEU 28 156 156 LEU LEU B . n B 1 29 ALA 29 157 157 ALA ALA B . n B 1 30 CYS 30 158 158 CYS CYS B . n B 1 31 PHE 31 159 159 PHE PHE B . n B 1 32 ALA 32 160 160 ALA ALA B . n B 1 33 ILE 33 161 161 ILE ILE B . n B 1 34 TYR 34 162 162 TYR TYR B . n B 1 35 THR 35 163 163 THR THR B . n B 1 36 THR 36 164 164 THR THR B . n B 1 37 LYS 37 165 165 LYS LYS B . n B 1 38 GLU 38 166 166 GLU GLU B . n B 1 39 LYS 39 167 167 LYS LYS B . n B 1 40 ALA 40 168 168 ALA ALA B . n B 1 41 ALA 41 169 169 ALA ALA B . n B 1 42 LEU 42 170 170 LEU LEU B . n B 1 43 LEU 43 171 171 LEU LEU B . n B 1 44 TYR 44 172 172 TYR TYR B . n B 1 45 LYS 45 173 173 LYS LYS B . n B 1 46 LYS 46 174 174 LYS LYS B . n B 1 47 ILE 47 175 175 ILE ILE B . n B 1 48 MET 48 176 176 MET MET B . n B 1 49 GLU 49 177 177 GLU GLU B . n B 1 50 LYS 50 178 178 LYS LYS B . n B 1 51 TYR 51 179 179 TYR TYR B . n B 1 52 SER 52 180 180 SER SER B . n B 1 53 VAL 53 181 181 VAL VAL B . n B 1 54 THR 54 182 182 THR THR B . n B 1 55 PHE 55 183 183 PHE PHE B . n B 1 56 ILE 56 184 184 ILE ILE B . n B 1 57 SER 57 185 185 SER SER B . n B 1 58 ARG 58 186 186 ARG ARG B . n B 1 59 HIS 59 187 187 HIS HIS B . n B 1 60 ASN 60 188 188 ASN ASN B . n B 1 61 SER 61 189 189 SER SER B . n B 1 62 TYR 62 190 190 TYR TYR B . n B 1 63 ASN 63 191 191 ASN ASN B . n B 1 64 HIS 64 192 192 HIS HIS B . n B 1 65 ASN 65 193 193 ASN ASN B . n B 1 66 ILE 66 194 194 ILE ILE B . n B 1 67 LEU 67 195 195 LEU LEU B . n B 1 68 PHE 68 196 196 PHE PHE B . n B 1 69 PHE 69 197 197 PHE PHE B . n B 1 70 LEU 70 198 198 LEU LEU B . n B 1 71 THR 71 199 199 THR THR B . n B 1 72 PRO 72 200 200 PRO PRO B . n B 1 73 HIS 73 201 201 HIS HIS B . n B 1 74 ARG 74 202 202 ARG ARG B . n B 1 75 HIS 75 203 203 HIS HIS B . n B 1 76 ARG 76 204 204 ARG ARG B . n B 1 77 VAL 77 205 205 VAL VAL B . n B 1 78 SER 78 206 206 SER SER B . n B 1 79 ALA 79 207 207 ALA ALA B . n B 1 80 ILE 80 208 208 ILE ILE B . n B 1 81 ASN 81 209 209 ASN ASN B . n B 1 82 ASN 82 210 210 ASN ASN B . n B 1 83 TYR 83 211 211 TYR TYR B . n B 1 84 ALA 84 212 212 ALA ALA B . n B 1 85 GLN 85 213 213 GLN GLN B . n B 1 86 LYS 86 214 214 LYS LYS B . n B 1 87 LEU 87 215 215 LEU LEU B . n B 1 88 CYS 88 216 216 CYS CYS B . n B 1 89 THR 89 217 217 THR THR B . n B 1 90 PHE 90 218 218 PHE PHE B . n B 1 91 SER 91 219 219 SER SER B . n B 1 92 PHE 92 220 220 PHE PHE B . n B 1 93 LEU 93 221 221 LEU LEU B . n B 1 94 ILE 94 222 222 ILE ILE B . n B 1 95 CYS 95 223 223 CYS CYS B . n B 1 96 LYS 96 224 224 LYS LYS B . n B 1 97 GLY 97 225 225 GLY GLY B . n B 1 98 VAL 98 226 226 VAL VAL B . n B 1 99 ASN 99 227 227 ASN ASN B . n B 1 100 LYS 100 228 228 LYS LYS B . n B 1 101 GLU 101 229 229 GLU GLU B . n B 1 102 TYR 102 230 230 TYR TYR B . n B 1 103 LEU 103 231 231 LEU LEU B . n B 1 104 MET 104 232 232 MET MET B . n B 1 105 TYR 105 233 233 TYR TYR B . n B 1 106 SER 106 234 234 SER SER B . n B 1 107 ALA 107 235 235 ALA ALA B . n B 1 108 LEU 108 236 236 LEU LEU B . n B 1 109 THR 109 237 237 THR THR B . n B 1 110 ARG 110 238 238 ARG ARG B . n B 1 111 ASP 111 239 239 ASP ASP B . n B 1 112 PRO 112 240 240 PRO PRO B . n B 1 113 PHE 113 241 241 PHE PHE B . n B 1 114 SER 114 242 242 SER SER B . n B 1 115 VAL 115 243 243 VAL VAL B . n B 1 116 ILE 116 244 244 ILE ILE B . n B 1 117 GLU 117 245 245 GLU GLU B . n B 1 118 GLU 118 246 246 GLU GLU B . n B 1 119 SER 119 247 247 SER SER B . n B 1 120 LEU 120 248 248 LEU LEU B . n B 1 121 PRO 121 249 249 PRO PRO B . n B 1 122 GLY 122 250 250 GLY GLY B . n B 1 123 GLY 123 251 251 GLY GLY B . n B 1 124 LEU 124 252 252 LEU LEU B . n B 1 125 LYS 125 253 253 LYS LYS B . n B 1 126 GLU 126 254 254 GLU GLU B . n B 1 127 HIS 127 255 255 HIS HIS B . n B 1 128 ASP 128 256 256 ASP ASP B . n B 1 129 PHE 129 257 257 PHE PHE B . n B 1 130 ASN 130 258 258 ASN ASN B . n B 1 131 PRO 131 259 259 PRO PRO B . n B 1 132 GLU 132 260 260 GLU GLU B . n B 1 133 SER 133 261 ? ? ? B . n B 1 134 SER 134 262 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 1 1 HOH HOH A . C 2 HOH 2 2 2 HOH HOH A . C 2 HOH 3 3 3 HOH HOH A . C 2 HOH 4 4 4 HOH HOH A . C 2 HOH 5 5 5 HOH HOH A . C 2 HOH 6 6 6 HOH HOH A . C 2 HOH 7 7 7 HOH HOH A . C 2 HOH 8 11 11 HOH HOH A . C 2 HOH 9 12 12 HOH HOH A . C 2 HOH 10 13 13 HOH HOH A . C 2 HOH 11 14 14 HOH HOH A . C 2 HOH 12 15 15 HOH HOH A . C 2 HOH 13 19 19 HOH HOH A . C 2 HOH 14 20 20 HOH HOH A . C 2 HOH 15 21 21 HOH HOH A . C 2 HOH 16 22 22 HOH HOH A . C 2 HOH 17 24 24 HOH HOH A . C 2 HOH 18 27 27 HOH HOH A . C 2 HOH 19 28 28 HOH HOH A . C 2 HOH 20 29 29 HOH HOH A . C 2 HOH 21 30 30 HOH HOH A . C 2 HOH 22 31 31 HOH HOH A . C 2 HOH 23 32 32 HOH HOH A . C 2 HOH 24 33 33 HOH HOH A . C 2 HOH 25 36 36 HOH HOH A . C 2 HOH 26 40 40 HOH HOH A . C 2 HOH 27 47 47 HOH HOH A . C 2 HOH 28 50 50 HOH HOH A . D 2 HOH 1 8 8 HOH HOH B . D 2 HOH 2 9 9 HOH HOH B . D 2 HOH 3 10 10 HOH HOH B . D 2 HOH 4 16 16 HOH HOH B . D 2 HOH 5 17 17 HOH HOH B . D 2 HOH 6 18 18 HOH HOH B . D 2 HOH 7 23 23 HOH HOH B . D 2 HOH 8 25 25 HOH HOH B . D 2 HOH 9 26 26 HOH HOH B . D 2 HOH 10 34 34 HOH HOH B . D 2 HOH 11 35 35 HOH HOH B . D 2 HOH 12 37 37 HOH HOH B . D 2 HOH 13 38 38 HOH HOH B . D 2 HOH 14 39 39 HOH HOH B . D 2 HOH 15 41 41 HOH HOH B . D 2 HOH 16 42 42 HOH HOH B . D 2 HOH 17 43 43 HOH HOH B . D 2 HOH 18 44 44 HOH HOH B . D 2 HOH 19 45 45 HOH HOH B . D 2 HOH 20 46 46 HOH HOH B . D 2 HOH 21 48 48 HOH HOH B . D 2 HOH 22 49 49 HOH HOH B . D 2 HOH 23 51 51 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 790 ? 1 MORE -6 ? 1 'SSA (A^2)' 13830 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-02-13 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_phasing_MR.entry_id 2IF9 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.580 _pdbx_phasing_MR.d_res_low_rotation 38.500 _pdbx_phasing_MR.d_res_high_translation 2.580 _pdbx_phasing_MR.d_res_low_translation 38.500 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 PHASER . ? other 'R. J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 8 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A PHE 218 ? ? CA A PHE 218 ? ? C A PHE 218 ? ? 131.03 111.00 20.03 2.70 N 2 1 C A ASN 258 ? ? N A PRO 259 ? ? CD A PRO 259 ? ? 111.53 128.40 -16.87 2.10 Y 3 1 CB B ASP 137 ? ? CG B ASP 137 ? ? OD2 B ASP 137 ? ? 123.85 118.30 5.55 0.90 N 4 1 C B ASN 258 ? ? N B PRO 259 ? ? CD B PRO 259 ? ? 109.63 128.40 -18.76 2.10 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 130 ? ? 65.68 -65.25 2 1 GLU A 141 ? ? -47.26 -18.41 3 1 TYR A 190 ? ? 57.02 -102.22 4 1 HIS A 192 ? ? -116.04 -166.21 5 1 LEU A 215 ? ? -19.72 -91.20 6 1 SER A 219 ? ? -104.31 -147.20 7 1 PRO A 259 ? ? -7.82 -105.48 8 1 TYR B 190 ? ? 53.17 -112.37 9 1 HIS B 192 ? ? -119.31 -160.64 10 1 SER B 219 ? ? 56.82 177.72 11 1 LYS B 228 ? ? -106.56 70.30 12 1 ASP B 239 ? ? -26.97 128.18 13 1 PRO B 259 ? ? -25.28 -91.88 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 261 ? A SER 133 2 1 Y 1 A SER 262 ? A SER 134 3 1 Y 1 B GLY 129 ? B GLY 1 4 1 Y 1 B SER 261 ? B SER 133 5 1 Y 1 B SER 262 ? B SER 134 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TYR N N N N 321 TYR CA C N S 322 TYR C C N N 323 TYR O O N N 324 TYR CB C N N 325 TYR CG C Y N 326 TYR CD1 C Y N 327 TYR CD2 C Y N 328 TYR CE1 C Y N 329 TYR CE2 C Y N 330 TYR CZ C Y N 331 TYR OH O N N 332 TYR OXT O N N 333 TYR H H N N 334 TYR H2 H N N 335 TYR HA H N N 336 TYR HB2 H N N 337 TYR HB3 H N N 338 TYR HD1 H N N 339 TYR HD2 H N N 340 TYR HE1 H N N 341 TYR HE2 H N N 342 TYR HH H N N 343 TYR HXT H N N 344 VAL N N N N 345 VAL CA C N S 346 VAL C C N N 347 VAL O O N N 348 VAL CB C N N 349 VAL CG1 C N N 350 VAL CG2 C N N 351 VAL OXT O N N 352 VAL H H N N 353 VAL H2 H N N 354 VAL HA H N N 355 VAL HB H N N 356 VAL HG11 H N N 357 VAL HG12 H N N 358 VAL HG13 H N N 359 VAL HG21 H N N 360 VAL HG22 H N N 361 VAL HG23 H N N 362 VAL HXT H N N 363 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TYR N CA sing N N 306 TYR N H sing N N 307 TYR N H2 sing N N 308 TYR CA C sing N N 309 TYR CA CB sing N N 310 TYR CA HA sing N N 311 TYR C O doub N N 312 TYR C OXT sing N N 313 TYR CB CG sing N N 314 TYR CB HB2 sing N N 315 TYR CB HB3 sing N N 316 TYR CG CD1 doub Y N 317 TYR CG CD2 sing Y N 318 TYR CD1 CE1 sing Y N 319 TYR CD1 HD1 sing N N 320 TYR CD2 CE2 doub Y N 321 TYR CD2 HD2 sing N N 322 TYR CE1 CZ doub Y N 323 TYR CE1 HE1 sing N N 324 TYR CE2 CZ sing Y N 325 TYR CE2 HE2 sing N N 326 TYR CZ OH sing N N 327 TYR OH HH sing N N 328 TYR OXT HXT sing N N 329 VAL N CA sing N N 330 VAL N H sing N N 331 VAL N H2 sing N N 332 VAL CA C sing N N 333 VAL CA CB sing N N 334 VAL CA HA sing N N 335 VAL C O doub N N 336 VAL C OXT sing N N 337 VAL CB CG1 sing N N 338 VAL CB CG2 sing N N 339 VAL CB HB sing N N 340 VAL CG1 HG11 sing N N 341 VAL CG1 HG12 sing N N 342 VAL CG1 HG13 sing N N 343 VAL CG2 HG21 sing N N 344 VAL CG2 HG22 sing N N 345 VAL CG2 HG23 sing N N 346 VAL OXT HXT sing N N 347 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2FUF _pdbx_initial_refinement_model.details ? #