data_2IFV # _entry.id 2IFV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2IFV pdb_00002ifv 10.2210/pdb2ifv/pdb RCSB RCSB039525 ? ? WWPDB D_1000039525 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1YMK 'Crystal Structure of the CDC25B phosphatase catalytic domain in the apo form' unspecified PDB 1QB0 'Crystal structure of Human CDC25B catalytic domain' unspecified PDB 2A2K 'Crystal Structure of an active site mutant, C473S, of Cdc25B Phosphatase Catalytic Domain' unspecified PDB 2IFD 'Crystal structure of a remote binding site mutant, R492L, of CDC25B Phosphatase catalytic domain' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2IFV _pdbx_database_status.recvd_initial_deposition_date 2006-09-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rudolph, J.' 1 'Buhrman, G.' 2 # _citation.id primary _citation.title 'Kinetic and structural studies of specific protein-protein interactions in substrate catalysis by Cdc25B phosphatase.' _citation.journal_abbrev Biochemistry _citation.journal_volume 46 _citation.page_first 807 _citation.page_last 818 _citation.year 2007 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17223702 _citation.pdbx_database_id_DOI 10.1021/bi061257y # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sohn, J.' 1 ? primary 'Buhrman, G.' 2 ? primary 'Rudolph, J.' 3 ? # _cell.entry_id 2IFV _cell.length_a 49.895 _cell.length_b 71.189 _cell.length_c 73.870 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2IFV _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'M-phase inducer phosphatase 2' 20693.746 1 3.1.3.48 C473D 'Catalytic domain, residues 391-564' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 3 water nat water 18.015 240 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Dual specificity phosphatase Cdc25B' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLK SPIAPCSLDKRVILIFHDEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEA FKDELKTFRLKTRSW ; _entity_poly.pdbx_seq_one_letter_code_can ;MELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLK SPIAPCSLDKRVILIFHDEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEA FKDELKTFRLKTRSW ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 LEU n 1 4 ILE n 1 5 GLY n 1 6 ASP n 1 7 TYR n 1 8 SER n 1 9 LYS n 1 10 ALA n 1 11 PHE n 1 12 LEU n 1 13 LEU n 1 14 GLN n 1 15 THR n 1 16 VAL n 1 17 ASP n 1 18 GLY n 1 19 LYS n 1 20 HIS n 1 21 GLN n 1 22 ASP n 1 23 LEU n 1 24 LYS n 1 25 TYR n 1 26 ILE n 1 27 SER n 1 28 PRO n 1 29 GLU n 1 30 THR n 1 31 MET n 1 32 VAL n 1 33 ALA n 1 34 LEU n 1 35 LEU n 1 36 THR n 1 37 GLY n 1 38 LYS n 1 39 PHE n 1 40 SER n 1 41 ASN n 1 42 ILE n 1 43 VAL n 1 44 ASP n 1 45 LYS n 1 46 PHE n 1 47 VAL n 1 48 ILE n 1 49 VAL n 1 50 ASP n 1 51 CYS n 1 52 ARG n 1 53 TYR n 1 54 PRO n 1 55 TYR n 1 56 GLU n 1 57 TYR n 1 58 GLU n 1 59 GLY n 1 60 GLY n 1 61 HIS n 1 62 ILE n 1 63 LYS n 1 64 THR n 1 65 ALA n 1 66 VAL n 1 67 ASN n 1 68 LEU n 1 69 PRO n 1 70 LEU n 1 71 GLU n 1 72 ARG n 1 73 ASP n 1 74 ALA n 1 75 GLU n 1 76 SER n 1 77 PHE n 1 78 LEU n 1 79 LEU n 1 80 LYS n 1 81 SER n 1 82 PRO n 1 83 ILE n 1 84 ALA n 1 85 PRO n 1 86 CYS n 1 87 SER n 1 88 LEU n 1 89 ASP n 1 90 LYS n 1 91 ARG n 1 92 VAL n 1 93 ILE n 1 94 LEU n 1 95 ILE n 1 96 PHE n 1 97 HIS n 1 98 ASP n 1 99 GLU n 1 100 PHE n 1 101 SER n 1 102 SER n 1 103 GLU n 1 104 ARG n 1 105 GLY n 1 106 PRO n 1 107 ARG n 1 108 MET n 1 109 CYS n 1 110 ARG n 1 111 PHE n 1 112 ILE n 1 113 ARG n 1 114 GLU n 1 115 ARG n 1 116 ASP n 1 117 ARG n 1 118 ALA n 1 119 VAL n 1 120 ASN n 1 121 ASP n 1 122 TYR n 1 123 PRO n 1 124 SER n 1 125 LEU n 1 126 TYR n 1 127 TYR n 1 128 PRO n 1 129 GLU n 1 130 MET n 1 131 TYR n 1 132 ILE n 1 133 LEU n 1 134 LYS n 1 135 GLY n 1 136 GLY n 1 137 TYR n 1 138 LYS n 1 139 GLU n 1 140 PHE n 1 141 PHE n 1 142 PRO n 1 143 GLN n 1 144 HIS n 1 145 PRO n 1 146 ASN n 1 147 PHE n 1 148 CYS n 1 149 GLU n 1 150 PRO n 1 151 GLN n 1 152 ASP n 1 153 TYR n 1 154 ARG n 1 155 PRO n 1 156 MET n 1 157 ASN n 1 158 HIS n 1 159 GLU n 1 160 ALA n 1 161 PHE n 1 162 LYS n 1 163 ASP n 1 164 GLU n 1 165 LEU n 1 166 LYS n 1 167 THR n 1 168 PHE n 1 169 ARG n 1 170 LEU n 1 171 LYS n 1 172 THR n 1 173 ARG n 1 174 SER n 1 175 TRP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'CDC25B, CDC25HU2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET3 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MPIP2_HUMAN _struct_ref.pdbx_db_accession P30305 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKS PIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAF KDELKTFRLKTRSW ; _struct_ref.pdbx_align_begin 391 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2IFV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 175 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P30305 _struct_ref_seq.db_align_beg 391 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 564 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 377 _struct_ref_seq.pdbx_auth_seq_align_end 550 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2IFV MET A 1 ? UNP P30305 ? ? 'initiating methionine' 376 1 1 2IFV ASP A 98 ? UNP P30305 CYS 487 'engineered mutation' 473 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2IFV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.17 _exptl_crystal.density_percent_sol 61.17 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'DTT, AMMONIUM SULFATE, TRIS, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00 # _reflns.entry_id 2IFV _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 1.6 _reflns.number_obs 34010 _reflns.number_all 35424 _reflns.percent_possible_obs 96 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.081 _reflns.pdbx_netI_over_sigmaI 32.8 _reflns.B_iso_Wilson_estimate 15.6 _reflns.pdbx_redundancy 7.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 2IFV _refine.ls_number_reflns_obs 34010 _refine.ls_number_reflns_all 35424 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 243843.01 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.69 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 96.2 _refine.ls_R_factor_obs 0.179 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.179 _refine.ls_R_factor_R_free 0.192 _refine.ls_R_factor_R_free_error 0.003 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 3369 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 17.0 _refine.aniso_B[1][1] 2.97 _refine.aniso_B[2][2] -1.44 _refine.aniso_B[3][3] -1.53 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.374661 _refine.solvent_model_param_bsol 46.4737 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1YMK' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2IFV _refine_analyze.Luzzati_coordinate_error_obs 0.16 _refine_analyze.Luzzati_sigma_a_obs 0.07 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.17 _refine_analyze.Luzzati_sigma_a_free 0.09 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1457 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 240 _refine_hist.number_atoms_total 1699 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 29.69 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.85 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.14 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.86 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.00 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.05 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.60 _refine_ls_shell.d_res_low 1.70 _refine_ls_shell.number_reflns_R_work 4587 _refine_ls_shell.R_factor_R_work 0.212 _refine_ls_shell.percent_reflns_obs 87.9 _refine_ls_shell.R_factor_R_free 0.225 _refine_ls_shell.R_factor_R_free_error 0.010 _refine_ls_shell.percent_reflns_R_free 10.4 _refine_ls_shell.number_reflns_R_free 530 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water.param water.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 2IFV _struct.title 'Crystal structure of an active site mutant, C473D, of CDC25B phosphatase catalytic domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2IFV _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'PHOSPHATASE, DUAL SPECIFICITY, ACTIVE SITE MUTANT, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 27 ? THR A 36 ? SER A 402 THR A 411 1 ? 10 HELX_P HELX_P2 2 TYR A 53 ? GLY A 59 ? TYR A 428 GLY A 434 1 ? 7 HELX_P HELX_P3 3 LEU A 70 ? LYS A 80 ? LEU A 445 LYS A 455 1 ? 11 HELX_P HELX_P4 4 GLU A 103 ? VAL A 119 ? GLU A 478 VAL A 494 1 ? 17 HELX_P HELX_P5 5 GLY A 135 ? PHE A 141 ? GLY A 510 PHE A 516 1 ? 7 HELX_P HELX_P6 6 HIS A 144 ? ASN A 146 ? HIS A 519 ASN A 521 5 ? 3 HELX_P HELX_P7 7 HIS A 158 ? ALA A 160 ? HIS A 533 ALA A 535 5 ? 3 HELX_P HELX_P8 8 PHE A 161 ? LEU A 170 ? PHE A 536 LEU A 545 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 122 A . ? TYR 497 A PRO 123 A ? PRO 498 A 1 0.20 2 GLU 149 A . ? GLU 524 A PRO 150 A ? PRO 525 A 1 -0.59 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 25 ? ILE A 26 ? TYR A 400 ILE A 401 A 2 MET A 130 ? LEU A 133 ? MET A 505 LEU A 508 A 3 ARG A 91 ? HIS A 97 ? ARG A 466 HIS A 472 A 4 VAL A 43 ? ASP A 50 ? VAL A 418 ASP A 425 A 5 VAL A 66 ? ASN A 67 ? VAL A 441 ASN A 442 B 1 HIS A 61 ? ILE A 62 ? HIS A 436 ILE A 437 B 2 CYS A 148 ? GLU A 149 ? CYS A 523 GLU A 524 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 26 ? N ILE A 401 O ILE A 132 ? O ILE A 507 A 2 3 O TYR A 131 ? O TYR A 506 N PHE A 96 ? N PHE A 471 A 3 4 O ILE A 95 ? O ILE A 470 N VAL A 49 ? N VAL A 424 A 4 5 N ILE A 48 ? N ILE A 423 O VAL A 66 ? O VAL A 441 B 1 2 N HIS A 61 ? N HIS A 436 O GLU A 149 ? O GLU A 524 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 551 ? 4 'BINDING SITE FOR RESIDUE CL A 551' AC2 Software A CL 552 ? 3 'BINDING SITE FOR RESIDUE CL A 552' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLU A 71 ? GLU A 446 . ? 1_555 ? 2 AC1 4 ARG A 173 ? ARG A 548 . ? 1_555 ? 3 AC1 4 HOH D . ? HOH A 559 . ? 1_555 ? 4 AC1 4 HOH D . ? HOH A 665 . ? 1_555 ? 5 AC2 3 LYS A 19 ? LYS A 394 . ? 1_555 ? 6 AC2 3 SER A 101 ? SER A 476 . ? 1_555 ? 7 AC2 3 LYS A 134 ? LYS A 509 . ? 1_555 ? # _database_PDB_matrix.entry_id 2IFV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2IFV _atom_sites.fract_transf_matrix[1][1] 0.020042 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014047 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013537 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 376 376 MET MET A . n A 1 2 GLU 2 377 377 GLU GLU A . n A 1 3 LEU 3 378 378 LEU LEU A . n A 1 4 ILE 4 379 379 ILE ILE A . n A 1 5 GLY 5 380 380 GLY GLY A . n A 1 6 ASP 6 381 381 ASP ASP A . n A 1 7 TYR 7 382 382 TYR TYR A . n A 1 8 SER 8 383 383 SER SER A . n A 1 9 LYS 9 384 384 LYS LYS A . n A 1 10 ALA 10 385 385 ALA ALA A . n A 1 11 PHE 11 386 386 PHE PHE A . n A 1 12 LEU 12 387 387 LEU LEU A . n A 1 13 LEU 13 388 388 LEU LEU A . n A 1 14 GLN 14 389 389 GLN GLN A . n A 1 15 THR 15 390 390 THR THR A . n A 1 16 VAL 16 391 391 VAL VAL A . n A 1 17 ASP 17 392 392 ASP ASP A . n A 1 18 GLY 18 393 393 GLY GLY A . n A 1 19 LYS 19 394 394 LYS LYS A . n A 1 20 HIS 20 395 395 HIS HIS A . n A 1 21 GLN 21 396 396 GLN GLN A . n A 1 22 ASP 22 397 397 ASP ASP A . n A 1 23 LEU 23 398 398 LEU LEU A . n A 1 24 LYS 24 399 399 LYS LYS A . n A 1 25 TYR 25 400 400 TYR TYR A . n A 1 26 ILE 26 401 401 ILE ILE A . n A 1 27 SER 27 402 402 SER SER A . n A 1 28 PRO 28 403 403 PRO PRO A . n A 1 29 GLU 29 404 404 GLU GLU A . n A 1 30 THR 30 405 405 THR THR A . n A 1 31 MET 31 406 406 MET MET A . n A 1 32 VAL 32 407 407 VAL VAL A . n A 1 33 ALA 33 408 408 ALA ALA A . n A 1 34 LEU 34 409 409 LEU LEU A . n A 1 35 LEU 35 410 410 LEU LEU A . n A 1 36 THR 36 411 411 THR THR A . n A 1 37 GLY 37 412 412 GLY GLY A . n A 1 38 LYS 38 413 413 LYS LYS A . n A 1 39 PHE 39 414 414 PHE PHE A . n A 1 40 SER 40 415 415 SER SER A . n A 1 41 ASN 41 416 416 ASN ASN A . n A 1 42 ILE 42 417 417 ILE ILE A . n A 1 43 VAL 43 418 418 VAL VAL A . n A 1 44 ASP 44 419 419 ASP ASP A . n A 1 45 LYS 45 420 420 LYS LYS A . n A 1 46 PHE 46 421 421 PHE PHE A . n A 1 47 VAL 47 422 422 VAL VAL A . n A 1 48 ILE 48 423 423 ILE ILE A . n A 1 49 VAL 49 424 424 VAL VAL A . n A 1 50 ASP 50 425 425 ASP ASP A . n A 1 51 CYS 51 426 426 CYS CYS A . n A 1 52 ARG 52 427 427 ARG ARG A . n A 1 53 TYR 53 428 428 TYR TYR A . n A 1 54 PRO 54 429 429 PRO PRO A . n A 1 55 TYR 55 430 430 TYR TYR A . n A 1 56 GLU 56 431 431 GLU GLU A . n A 1 57 TYR 57 432 432 TYR TYR A . n A 1 58 GLU 58 433 433 GLU GLU A . n A 1 59 GLY 59 434 434 GLY GLY A . n A 1 60 GLY 60 435 435 GLY GLY A . n A 1 61 HIS 61 436 436 HIS HIS A . n A 1 62 ILE 62 437 437 ILE ILE A . n A 1 63 LYS 63 438 438 LYS LYS A . n A 1 64 THR 64 439 439 THR THR A . n A 1 65 ALA 65 440 440 ALA ALA A . n A 1 66 VAL 66 441 441 VAL VAL A . n A 1 67 ASN 67 442 442 ASN ASN A . n A 1 68 LEU 68 443 443 LEU LEU A . n A 1 69 PRO 69 444 444 PRO PRO A . n A 1 70 LEU 70 445 445 LEU LEU A . n A 1 71 GLU 71 446 446 GLU GLU A . n A 1 72 ARG 72 447 447 ARG ARG A . n A 1 73 ASP 73 448 448 ASP ASP A . n A 1 74 ALA 74 449 449 ALA ALA A . n A 1 75 GLU 75 450 450 GLU GLU A . n A 1 76 SER 76 451 451 SER SER A . n A 1 77 PHE 77 452 452 PHE PHE A . n A 1 78 LEU 78 453 453 LEU LEU A . n A 1 79 LEU 79 454 454 LEU LEU A . n A 1 80 LYS 80 455 455 LYS LYS A . n A 1 81 SER 81 456 456 SER SER A . n A 1 82 PRO 82 457 457 PRO PRO A . n A 1 83 ILE 83 458 458 ILE ILE A . n A 1 84 ALA 84 459 459 ALA ALA A . n A 1 85 PRO 85 460 460 PRO PRO A . n A 1 86 CYS 86 461 461 CYS CYS A . n A 1 87 SER 87 462 462 SER SER A . n A 1 88 LEU 88 463 463 LEU LEU A . n A 1 89 ASP 89 464 464 ASP ASP A . n A 1 90 LYS 90 465 465 LYS LYS A . n A 1 91 ARG 91 466 466 ARG ARG A . n A 1 92 VAL 92 467 467 VAL VAL A . n A 1 93 ILE 93 468 468 ILE ILE A . n A 1 94 LEU 94 469 469 LEU LEU A . n A 1 95 ILE 95 470 470 ILE ILE A . n A 1 96 PHE 96 471 471 PHE PHE A . n A 1 97 HIS 97 472 472 HIS HIS A . n A 1 98 ASP 98 473 473 ASP ASP A . n A 1 99 GLU 99 474 474 GLU GLU A . n A 1 100 PHE 100 475 475 PHE PHE A . n A 1 101 SER 101 476 476 SER SER A . n A 1 102 SER 102 477 477 SER SER A . n A 1 103 GLU 103 478 478 GLU GLU A . n A 1 104 ARG 104 479 479 ARG ARG A . n A 1 105 GLY 105 480 480 GLY GLY A . n A 1 106 PRO 106 481 481 PRO PRO A . n A 1 107 ARG 107 482 482 ARG ARG A . n A 1 108 MET 108 483 483 MET MET A . n A 1 109 CYS 109 484 484 CYS CYS A . n A 1 110 ARG 110 485 485 ARG ARG A . n A 1 111 PHE 111 486 486 PHE PHE A . n A 1 112 ILE 112 487 487 ILE ILE A . n A 1 113 ARG 113 488 488 ARG ARG A . n A 1 114 GLU 114 489 489 GLU GLU A . n A 1 115 ARG 115 490 490 ARG ARG A . n A 1 116 ASP 116 491 491 ASP ASP A . n A 1 117 ARG 117 492 492 ARG ARG A . n A 1 118 ALA 118 493 493 ALA ALA A . n A 1 119 VAL 119 494 494 VAL VAL A . n A 1 120 ASN 120 495 495 ASN ASN A . n A 1 121 ASP 121 496 496 ASP ASP A . n A 1 122 TYR 122 497 497 TYR TYR A . n A 1 123 PRO 123 498 498 PRO PRO A . n A 1 124 SER 124 499 499 SER SER A . n A 1 125 LEU 125 500 500 LEU LEU A . n A 1 126 TYR 126 501 501 TYR TYR A . n A 1 127 TYR 127 502 502 TYR TYR A . n A 1 128 PRO 128 503 503 PRO PRO A . n A 1 129 GLU 129 504 504 GLU GLU A . n A 1 130 MET 130 505 505 MET MET A . n A 1 131 TYR 131 506 506 TYR TYR A . n A 1 132 ILE 132 507 507 ILE ILE A . n A 1 133 LEU 133 508 508 LEU LEU A . n A 1 134 LYS 134 509 509 LYS LYS A . n A 1 135 GLY 135 510 510 GLY GLY A . n A 1 136 GLY 136 511 511 GLY GLY A . n A 1 137 TYR 137 512 512 TYR TYR A . n A 1 138 LYS 138 513 513 LYS LYS A . n A 1 139 GLU 139 514 514 GLU GLU A . n A 1 140 PHE 140 515 515 PHE PHE A . n A 1 141 PHE 141 516 516 PHE PHE A . n A 1 142 PRO 142 517 517 PRO PRO A . n A 1 143 GLN 143 518 518 GLN GLN A . n A 1 144 HIS 144 519 519 HIS HIS A . n A 1 145 PRO 145 520 520 PRO PRO A . n A 1 146 ASN 146 521 521 ASN ASN A . n A 1 147 PHE 147 522 522 PHE PHE A . n A 1 148 CYS 148 523 523 CYS CYS A . n A 1 149 GLU 149 524 524 GLU GLU A . n A 1 150 PRO 150 525 525 PRO PRO A . n A 1 151 GLN 151 526 526 GLN GLN A . n A 1 152 ASP 152 527 527 ASP ASP A . n A 1 153 TYR 153 528 528 TYR TYR A . n A 1 154 ARG 154 529 529 ARG ARG A . n A 1 155 PRO 155 530 530 PRO PRO A . n A 1 156 MET 156 531 531 MET MET A . n A 1 157 ASN 157 532 532 ASN ASN A . n A 1 158 HIS 158 533 533 HIS HIS A . n A 1 159 GLU 159 534 534 GLU GLU A . n A 1 160 ALA 160 535 535 ALA ALA A . n A 1 161 PHE 161 536 536 PHE PHE A . n A 1 162 LYS 162 537 537 LYS LYS A . n A 1 163 ASP 163 538 538 ASP ASP A . n A 1 164 GLU 164 539 539 GLU GLU A . n A 1 165 LEU 165 540 540 LEU LEU A . n A 1 166 LYS 166 541 541 LYS LYS A . n A 1 167 THR 167 542 542 THR THR A . n A 1 168 PHE 168 543 543 PHE PHE A . n A 1 169 ARG 169 544 544 ARG ARG A . n A 1 170 LEU 170 545 545 LEU LEU A . n A 1 171 LYS 171 546 546 LYS LYS A . n A 1 172 THR 172 547 547 THR THR A . n A 1 173 ARG 173 548 548 ARG ARG A . n A 1 174 SER 174 549 549 SER SER A . n A 1 175 TRP 175 550 550 TRP TRP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 551 1 CL CL A . C 2 CL 1 552 2 CL CL A . D 3 HOH 1 553 1 HOH TIP A . D 3 HOH 2 554 2 HOH TIP A . D 3 HOH 3 555 3 HOH TIP A . D 3 HOH 4 556 4 HOH TIP A . D 3 HOH 5 557 5 HOH TIP A . D 3 HOH 6 558 6 HOH TIP A . D 3 HOH 7 559 8 HOH TIP A . D 3 HOH 8 560 9 HOH TIP A . D 3 HOH 9 561 10 HOH TIP A . D 3 HOH 10 562 11 HOH TIP A . D 3 HOH 11 563 12 HOH TIP A . D 3 HOH 12 564 13 HOH TIP A . D 3 HOH 13 565 14 HOH TIP A . D 3 HOH 14 566 15 HOH TIP A . D 3 HOH 15 567 16 HOH TIP A . D 3 HOH 16 568 17 HOH TIP A . D 3 HOH 17 569 18 HOH TIP A . D 3 HOH 18 570 19 HOH TIP A . D 3 HOH 19 571 20 HOH TIP A . D 3 HOH 20 572 21 HOH TIP A . D 3 HOH 21 573 22 HOH TIP A . D 3 HOH 22 574 23 HOH TIP A . D 3 HOH 23 575 24 HOH TIP A . D 3 HOH 24 576 25 HOH TIP A . D 3 HOH 25 577 26 HOH TIP A . D 3 HOH 26 578 27 HOH TIP A . D 3 HOH 27 579 28 HOH TIP A . D 3 HOH 28 580 29 HOH TIP A . D 3 HOH 29 581 30 HOH TIP A . D 3 HOH 30 582 31 HOH TIP A . D 3 HOH 31 583 32 HOH TIP A . D 3 HOH 32 584 33 HOH TIP A . D 3 HOH 33 585 34 HOH TIP A . D 3 HOH 34 586 35 HOH TIP A . D 3 HOH 35 587 36 HOH TIP A . D 3 HOH 36 588 37 HOH TIP A . D 3 HOH 37 589 38 HOH TIP A . D 3 HOH 38 590 39 HOH TIP A . D 3 HOH 39 591 40 HOH TIP A . D 3 HOH 40 592 41 HOH TIP A . D 3 HOH 41 593 42 HOH TIP A . D 3 HOH 42 594 43 HOH TIP A . D 3 HOH 43 595 44 HOH TIP A . D 3 HOH 44 596 45 HOH TIP A . D 3 HOH 45 597 47 HOH TIP A . D 3 HOH 46 598 48 HOH TIP A . D 3 HOH 47 599 49 HOH TIP A . D 3 HOH 48 600 50 HOH TIP A . D 3 HOH 49 601 51 HOH TIP A . D 3 HOH 50 602 52 HOH TIP A . D 3 HOH 51 603 53 HOH TIP A . D 3 HOH 52 604 54 HOH TIP A . D 3 HOH 53 605 55 HOH TIP A . D 3 HOH 54 606 56 HOH TIP A . D 3 HOH 55 607 57 HOH TIP A . D 3 HOH 56 608 58 HOH TIP A . D 3 HOH 57 609 59 HOH TIP A . D 3 HOH 58 610 61 HOH TIP A . D 3 HOH 59 611 62 HOH TIP A . D 3 HOH 60 612 63 HOH TIP A . D 3 HOH 61 613 64 HOH TIP A . D 3 HOH 62 614 65 HOH TIP A . D 3 HOH 63 615 66 HOH TIP A . D 3 HOH 64 616 67 HOH TIP A . D 3 HOH 65 617 68 HOH TIP A . D 3 HOH 66 618 69 HOH TIP A . D 3 HOH 67 619 70 HOH TIP A . D 3 HOH 68 620 71 HOH TIP A . D 3 HOH 69 621 72 HOH TIP A . D 3 HOH 70 622 73 HOH TIP A . D 3 HOH 71 623 74 HOH TIP A . D 3 HOH 72 624 75 HOH TIP A . D 3 HOH 73 625 76 HOH TIP A . D 3 HOH 74 626 77 HOH TIP A . D 3 HOH 75 627 78 HOH TIP A . D 3 HOH 76 628 79 HOH TIP A . D 3 HOH 77 629 80 HOH TIP A . D 3 HOH 78 630 81 HOH TIP A . D 3 HOH 79 631 82 HOH TIP A . D 3 HOH 80 632 83 HOH TIP A . D 3 HOH 81 633 84 HOH TIP A . D 3 HOH 82 634 85 HOH TIP A . D 3 HOH 83 635 86 HOH TIP A . D 3 HOH 84 636 87 HOH TIP A . D 3 HOH 85 637 88 HOH TIP A . D 3 HOH 86 638 89 HOH TIP A . D 3 HOH 87 639 90 HOH TIP A . D 3 HOH 88 640 91 HOH TIP A . D 3 HOH 89 641 92 HOH TIP A . D 3 HOH 90 642 93 HOH TIP A . D 3 HOH 91 643 94 HOH TIP A . D 3 HOH 92 644 95 HOH TIP A . D 3 HOH 93 645 96 HOH TIP A . D 3 HOH 94 646 97 HOH TIP A . D 3 HOH 95 647 98 HOH TIP A . D 3 HOH 96 648 99 HOH TIP A . D 3 HOH 97 649 100 HOH TIP A . D 3 HOH 98 650 101 HOH TIP A . D 3 HOH 99 651 102 HOH TIP A . D 3 HOH 100 652 103 HOH TIP A . D 3 HOH 101 653 104 HOH TIP A . D 3 HOH 102 654 105 HOH TIP A . D 3 HOH 103 655 107 HOH TIP A . D 3 HOH 104 656 108 HOH TIP A . D 3 HOH 105 657 109 HOH TIP A . D 3 HOH 106 658 110 HOH TIP A . D 3 HOH 107 659 111 HOH TIP A . D 3 HOH 108 660 112 HOH TIP A . D 3 HOH 109 661 113 HOH TIP A . D 3 HOH 110 662 114 HOH TIP A . D 3 HOH 111 663 115 HOH TIP A . D 3 HOH 112 664 117 HOH TIP A . D 3 HOH 113 665 118 HOH TIP A . D 3 HOH 114 666 119 HOH TIP A . D 3 HOH 115 667 121 HOH TIP A . D 3 HOH 116 668 122 HOH TIP A . D 3 HOH 117 669 123 HOH TIP A . D 3 HOH 118 670 124 HOH TIP A . D 3 HOH 119 671 125 HOH TIP A . D 3 HOH 120 672 126 HOH TIP A . D 3 HOH 121 673 128 HOH TIP A . D 3 HOH 122 674 129 HOH TIP A . D 3 HOH 123 675 130 HOH TIP A . D 3 HOH 124 676 131 HOH TIP A . D 3 HOH 125 677 133 HOH TIP A . D 3 HOH 126 678 134 HOH TIP A . D 3 HOH 127 679 136 HOH TIP A . D 3 HOH 128 680 137 HOH TIP A . D 3 HOH 129 681 138 HOH TIP A . D 3 HOH 130 682 139 HOH TIP A . D 3 HOH 131 683 140 HOH TIP A . D 3 HOH 132 684 141 HOH TIP A . D 3 HOH 133 685 143 HOH TIP A . D 3 HOH 134 686 144 HOH TIP A . D 3 HOH 135 687 145 HOH TIP A . D 3 HOH 136 688 146 HOH TIP A . D 3 HOH 137 689 147 HOH TIP A . D 3 HOH 138 690 148 HOH TIP A . D 3 HOH 139 691 149 HOH TIP A . D 3 HOH 140 692 183 HOH TIP A . D 3 HOH 141 693 193 HOH TIP A . D 3 HOH 142 694 202 HOH TIP A . D 3 HOH 143 695 205 HOH TIP A . D 3 HOH 144 696 213 HOH TIP A . D 3 HOH 145 697 221 HOH TIP A . D 3 HOH 146 698 223 HOH TIP A . D 3 HOH 147 699 225 HOH TIP A . D 3 HOH 148 700 227 HOH TIP A . D 3 HOH 149 701 229 HOH TIP A . D 3 HOH 150 702 230 HOH TIP A . D 3 HOH 151 703 231 HOH TIP A . D 3 HOH 152 704 232 HOH TIP A . D 3 HOH 153 705 234 HOH TIP A . D 3 HOH 154 706 236 HOH TIP A . D 3 HOH 155 707 237 HOH TIP A . D 3 HOH 156 708 238 HOH TIP A . D 3 HOH 157 709 239 HOH TIP A . D 3 HOH 158 710 240 HOH TIP A . D 3 HOH 159 711 241 HOH TIP A . D 3 HOH 160 712 242 HOH TIP A . D 3 HOH 161 713 243 HOH TIP A . D 3 HOH 162 714 244 HOH TIP A . D 3 HOH 163 715 245 HOH TIP A . D 3 HOH 164 716 247 HOH TIP A . D 3 HOH 165 717 248 HOH TIP A . D 3 HOH 166 718 250 HOH TIP A . D 3 HOH 167 719 251 HOH TIP A . D 3 HOH 168 720 252 HOH TIP A . D 3 HOH 169 721 253 HOH TIP A . D 3 HOH 170 722 254 HOH TIP A . D 3 HOH 171 723 255 HOH TIP A . D 3 HOH 172 724 256 HOH TIP A . D 3 HOH 173 725 257 HOH TIP A . D 3 HOH 174 726 258 HOH TIP A . D 3 HOH 175 727 259 HOH TIP A . D 3 HOH 176 728 260 HOH TIP A . D 3 HOH 177 729 261 HOH TIP A . D 3 HOH 178 730 263 HOH TIP A . D 3 HOH 179 731 264 HOH TIP A . D 3 HOH 180 732 265 HOH TIP A . D 3 HOH 181 733 266 HOH TIP A . D 3 HOH 182 734 267 HOH TIP A . D 3 HOH 183 735 268 HOH TIP A . D 3 HOH 184 736 269 HOH TIP A . D 3 HOH 185 737 270 HOH TIP A . D 3 HOH 186 738 271 HOH TIP A . D 3 HOH 187 739 274 HOH TIP A . D 3 HOH 188 740 275 HOH TIP A . D 3 HOH 189 741 276 HOH TIP A . D 3 HOH 190 742 282 HOH TIP A . D 3 HOH 191 743 290 HOH TIP A . D 3 HOH 192 744 297 HOH TIP A . D 3 HOH 193 745 304 HOH TIP A . D 3 HOH 194 746 353 HOH TIP A . D 3 HOH 195 747 360 HOH TIP A . D 3 HOH 196 748 362 HOH TIP A . D 3 HOH 197 749 363 HOH TIP A . D 3 HOH 198 750 364 HOH TIP A . D 3 HOH 199 751 365 HOH TIP A . D 3 HOH 200 752 366 HOH TIP A . D 3 HOH 201 753 367 HOH TIP A . D 3 HOH 202 754 368 HOH TIP A . D 3 HOH 203 755 369 HOH TIP A . D 3 HOH 204 756 370 HOH TIP A . D 3 HOH 205 757 371 HOH TIP A . D 3 HOH 206 758 372 HOH TIP A . D 3 HOH 207 759 375 HOH TIP A . D 3 HOH 208 760 377 HOH TIP A . D 3 HOH 209 761 378 HOH TIP A . D 3 HOH 210 762 380 HOH TIP A . D 3 HOH 211 763 387 HOH TIP A . D 3 HOH 212 764 388 HOH TIP A . D 3 HOH 213 765 389 HOH TIP A . D 3 HOH 214 766 391 HOH TIP A . D 3 HOH 215 767 393 HOH TIP A . D 3 HOH 216 768 395 HOH TIP A . D 3 HOH 217 769 396 HOH TIP A . D 3 HOH 218 770 397 HOH TIP A . D 3 HOH 219 771 398 HOH TIP A . D 3 HOH 220 772 399 HOH TIP A . D 3 HOH 221 773 400 HOH TIP A . D 3 HOH 222 774 401 HOH TIP A . D 3 HOH 223 775 402 HOH TIP A . D 3 HOH 224 776 403 HOH TIP A . D 3 HOH 225 777 404 HOH TIP A . D 3 HOH 226 778 405 HOH TIP A . D 3 HOH 227 779 406 HOH TIP A . D 3 HOH 228 780 407 HOH TIP A . D 3 HOH 229 781 408 HOH TIP A . D 3 HOH 230 782 409 HOH TIP A . D 3 HOH 231 783 410 HOH TIP A . D 3 HOH 232 784 411 HOH TIP A . D 3 HOH 233 785 412 HOH TIP A . D 3 HOH 234 786 413 HOH TIP A . D 3 HOH 235 787 414 HOH TIP A . D 3 HOH 236 788 415 HOH TIP A . D 3 HOH 237 789 416 HOH TIP A . D 3 HOH 238 790 417 HOH TIP A . D 3 HOH 239 791 418 HOH TIP A . D 3 HOH 240 792 419 HOH TIP A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-02-27 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-20 5 'Structure model' 1 4 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_ref_seq_dif 3 4 'Structure model' struct_site 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 CNS phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 439 ? ? 77.99 -4.57 2 1 PRO A 457 ? ? -35.28 129.00 3 1 LEU A 463 ? ? -77.45 31.75 4 1 ASP A 473 ? ? -130.59 -148.28 5 1 SER A 477 ? ? -112.18 -102.50 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 HIS N N N N 138 HIS CA C N S 139 HIS C C N N 140 HIS O O N N 141 HIS CB C N N 142 HIS CG C Y N 143 HIS ND1 N Y N 144 HIS CD2 C Y N 145 HIS CE1 C Y N 146 HIS NE2 N Y N 147 HIS OXT O N N 148 HIS H H N N 149 HIS H2 H N N 150 HIS HA H N N 151 HIS HB2 H N N 152 HIS HB3 H N N 153 HIS HD1 H N N 154 HIS HD2 H N N 155 HIS HE1 H N N 156 HIS HE2 H N N 157 HIS HXT H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 ILE N N N N 162 ILE CA C N S 163 ILE C C N N 164 ILE O O N N 165 ILE CB C N S 166 ILE CG1 C N N 167 ILE CG2 C N N 168 ILE CD1 C N N 169 ILE OXT O N N 170 ILE H H N N 171 ILE H2 H N N 172 ILE HA H N N 173 ILE HB H N N 174 ILE HG12 H N N 175 ILE HG13 H N N 176 ILE HG21 H N N 177 ILE HG22 H N N 178 ILE HG23 H N N 179 ILE HD11 H N N 180 ILE HD12 H N N 181 ILE HD13 H N N 182 ILE HXT H N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 MET N N N N 231 MET CA C N S 232 MET C C N N 233 MET O O N N 234 MET CB C N N 235 MET CG C N N 236 MET SD S N N 237 MET CE C N N 238 MET OXT O N N 239 MET H H N N 240 MET H2 H N N 241 MET HA H N N 242 MET HB2 H N N 243 MET HB3 H N N 244 MET HG2 H N N 245 MET HG3 H N N 246 MET HE1 H N N 247 MET HE2 H N N 248 MET HE3 H N N 249 MET HXT H N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 THR N N N N 305 THR CA C N S 306 THR C C N N 307 THR O O N N 308 THR CB C N R 309 THR OG1 O N N 310 THR CG2 C N N 311 THR OXT O N N 312 THR H H N N 313 THR H2 H N N 314 THR HA H N N 315 THR HB H N N 316 THR HG1 H N N 317 THR HG21 H N N 318 THR HG22 H N N 319 THR HG23 H N N 320 THR HXT H N N 321 TRP N N N N 322 TRP CA C N S 323 TRP C C N N 324 TRP O O N N 325 TRP CB C N N 326 TRP CG C Y N 327 TRP CD1 C Y N 328 TRP CD2 C Y N 329 TRP NE1 N Y N 330 TRP CE2 C Y N 331 TRP CE3 C Y N 332 TRP CZ2 C Y N 333 TRP CZ3 C Y N 334 TRP CH2 C Y N 335 TRP OXT O N N 336 TRP H H N N 337 TRP H2 H N N 338 TRP HA H N N 339 TRP HB2 H N N 340 TRP HB3 H N N 341 TRP HD1 H N N 342 TRP HE1 H N N 343 TRP HE3 H N N 344 TRP HZ2 H N N 345 TRP HZ3 H N N 346 TRP HH2 H N N 347 TRP HXT H N N 348 TYR N N N N 349 TYR CA C N S 350 TYR C C N N 351 TYR O O N N 352 TYR CB C N N 353 TYR CG C Y N 354 TYR CD1 C Y N 355 TYR CD2 C Y N 356 TYR CE1 C Y N 357 TYR CE2 C Y N 358 TYR CZ C Y N 359 TYR OH O N N 360 TYR OXT O N N 361 TYR H H N N 362 TYR H2 H N N 363 TYR HA H N N 364 TYR HB2 H N N 365 TYR HB3 H N N 366 TYR HD1 H N N 367 TYR HD2 H N N 368 TYR HE1 H N N 369 TYR HE2 H N N 370 TYR HH H N N 371 TYR HXT H N N 372 VAL N N N N 373 VAL CA C N S 374 VAL C C N N 375 VAL O O N N 376 VAL CB C N N 377 VAL CG1 C N N 378 VAL CG2 C N N 379 VAL OXT O N N 380 VAL H H N N 381 VAL H2 H N N 382 VAL HA H N N 383 VAL HB H N N 384 VAL HG11 H N N 385 VAL HG12 H N N 386 VAL HG13 H N N 387 VAL HG21 H N N 388 VAL HG22 H N N 389 VAL HG23 H N N 390 VAL HXT H N N 391 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1YMK _pdbx_initial_refinement_model.details 'PDB ENTRY 1YMK' #