data_2IL5 # _entry.id 2IL5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2IL5 RCSB RCSB039707 WWPDB D_1000039707 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC23650 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2IL5 _pdbx_database_status.recvd_initial_deposition_date 2006-10-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Osipiuk, J.' 1 'Quartey, P.' 2 'Holzle, D.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'X-ray crystal structure of hypothetical protein SA2116 from Staphylococcus aureus.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Osipiuk, J.' 1 primary 'Quartey, P.' 2 primary 'Holzle, D.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 2IL5 _cell.length_a 107.588 _cell.length_b 107.588 _cell.length_c 39.105 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2IL5 _symmetry.space_group_name_H-M 'P 62' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hypothetical protein' 20805.217 1 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 water nat water 18.015 82 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)AKFNVENEHVEVEIEKLYKFSPELVYEAWTKKDLLKQWF(MSE)TSARTNKEIEADVKEGGKYRIVDQQRNG KVNVIEGIYESLV(MSE)DEYVK(MSE)TIG(MSE)PGLSETQDVIEVEFFERETGGTQ(MSE)LFYYRSLVEKERRFTN LEYKQKKKEYHDA(MSE)VHGFEL(MSE)FDK(MSE)YHVIETSTQQ ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMAKFNVENEHVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKVNVIEGI YESLVMDEYVKMTIGMPGLSETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDK MYHVIETSTQQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC23650 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 ALA n 1 6 LYS n 1 7 PHE n 1 8 ASN n 1 9 VAL n 1 10 GLU n 1 11 ASN n 1 12 GLU n 1 13 HIS n 1 14 VAL n 1 15 GLU n 1 16 VAL n 1 17 GLU n 1 18 ILE n 1 19 GLU n 1 20 LYS n 1 21 LEU n 1 22 TYR n 1 23 LYS n 1 24 PHE n 1 25 SER n 1 26 PRO n 1 27 GLU n 1 28 LEU n 1 29 VAL n 1 30 TYR n 1 31 GLU n 1 32 ALA n 1 33 TRP n 1 34 THR n 1 35 LYS n 1 36 LYS n 1 37 ASP n 1 38 LEU n 1 39 LEU n 1 40 LYS n 1 41 GLN n 1 42 TRP n 1 43 PHE n 1 44 MSE n 1 45 THR n 1 46 SER n 1 47 ALA n 1 48 ARG n 1 49 THR n 1 50 ASN n 1 51 LYS n 1 52 GLU n 1 53 ILE n 1 54 GLU n 1 55 ALA n 1 56 ASP n 1 57 VAL n 1 58 LYS n 1 59 GLU n 1 60 GLY n 1 61 GLY n 1 62 LYS n 1 63 TYR n 1 64 ARG n 1 65 ILE n 1 66 VAL n 1 67 ASP n 1 68 GLN n 1 69 GLN n 1 70 ARG n 1 71 ASN n 1 72 GLY n 1 73 LYS n 1 74 VAL n 1 75 ASN n 1 76 VAL n 1 77 ILE n 1 78 GLU n 1 79 GLY n 1 80 ILE n 1 81 TYR n 1 82 GLU n 1 83 SER n 1 84 LEU n 1 85 VAL n 1 86 MSE n 1 87 ASP n 1 88 GLU n 1 89 TYR n 1 90 VAL n 1 91 LYS n 1 92 MSE n 1 93 THR n 1 94 ILE n 1 95 GLY n 1 96 MSE n 1 97 PRO n 1 98 GLY n 1 99 LEU n 1 100 SER n 1 101 GLU n 1 102 THR n 1 103 GLN n 1 104 ASP n 1 105 VAL n 1 106 ILE n 1 107 GLU n 1 108 VAL n 1 109 GLU n 1 110 PHE n 1 111 PHE n 1 112 GLU n 1 113 ARG n 1 114 GLU n 1 115 THR n 1 116 GLY n 1 117 GLY n 1 118 THR n 1 119 GLN n 1 120 MSE n 1 121 LEU n 1 122 PHE n 1 123 TYR n 1 124 TYR n 1 125 ARG n 1 126 SER n 1 127 LEU n 1 128 VAL n 1 129 GLU n 1 130 LYS n 1 131 GLU n 1 132 ARG n 1 133 ARG n 1 134 PHE n 1 135 THR n 1 136 ASN n 1 137 LEU n 1 138 GLU n 1 139 TYR n 1 140 LYS n 1 141 GLN n 1 142 LYS n 1 143 LYS n 1 144 LYS n 1 145 GLU n 1 146 TYR n 1 147 HIS n 1 148 ASP n 1 149 ALA n 1 150 MSE n 1 151 VAL n 1 152 HIS n 1 153 GLY n 1 154 PHE n 1 155 GLU n 1 156 LEU n 1 157 MSE n 1 158 PHE n 1 159 ASP n 1 160 LYS n 1 161 MSE n 1 162 TYR n 1 163 HIS n 1 164 VAL n 1 165 ILE n 1 166 GLU n 1 167 THR n 1 168 SER n 1 169 THR n 1 170 GLN n 1 171 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Staphylococcus _entity_src_gen.pdbx_gene_src_gene SA2116 _entity_src_gen.gene_src_species 'Staphylococcus aureus' _entity_src_gen.gene_src_strain USA300 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus subsp. aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 367830 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q2FEH1_STAA3 _struct_ref.pdbx_db_accession Q2FEH1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAKFNVENEHVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKVNVIEGIYES LVMDEYVKMTIGMPGLSETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYH VIETSTQQ ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2IL5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 171 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2FEH1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 168 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 168 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2IL5 SER A 1 ? UNP Q2FEH1 ? ? 'CLONING ARTIFACT' -2 1 1 2IL5 ASN A 2 ? UNP Q2FEH1 ? ? 'CLONING ARTIFACT' -1 2 1 2IL5 ALA A 3 ? UNP Q2FEH1 ? ? 'CLONING ARTIFACT' 0 3 1 2IL5 MSE A 4 ? UNP Q2FEH1 MET 1 'MODIFIED RESIDUE' 1 4 1 2IL5 MSE A 44 ? UNP Q2FEH1 MET 41 'MODIFIED RESIDUE' 41 5 1 2IL5 MSE A 86 ? UNP Q2FEH1 MET 83 'MODIFIED RESIDUE' 83 6 1 2IL5 MSE A 92 ? UNP Q2FEH1 MET 89 'MODIFIED RESIDUE' 89 7 1 2IL5 MSE A 96 ? UNP Q2FEH1 MET 93 'MODIFIED RESIDUE' 93 8 1 2IL5 MSE A 120 ? UNP Q2FEH1 MET 117 'MODIFIED RESIDUE' 117 9 1 2IL5 MSE A 150 ? UNP Q2FEH1 MET 147 'MODIFIED RESIDUE' 147 10 1 2IL5 MSE A 157 ? UNP Q2FEH1 MET 154 'MODIFIED RESIDUE' 154 11 1 2IL5 MSE A 161 ? UNP Q2FEH1 MET 158 'MODIFIED RESIDUE' 158 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2IL5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.14 _exptl_crystal.density_percent_sol 60.83 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.2 M Proline, 0.1 M HEPES buffer, 10% PEG3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SBC _diffrn_detector.pdbx_collection_date 2005-06-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97910 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97910 # _reflns.entry_id 2IL5 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.30 _reflns.d_resolution_low 35.2 _reflns.number_all 11546 _reflns.number_obs 11546 _reflns.percent_possible_obs 98.4 _reflns.pdbx_Rmerge_I_obs 0.102 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 49.2 _reflns.B_iso_Wilson_estimate 63.5 _reflns.pdbx_redundancy 20.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 88.4 _reflns_shell.Rmerge_I_obs 0.797 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.0 _reflns_shell.pdbx_redundancy 14.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1010 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2IL5 _refine.ls_number_reflns_obs 11531 _refine.ls_number_reflns_all 11531 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.2 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 98.40 _refine.ls_R_factor_obs 0.2057 _refine.ls_R_factor_all 0.2057 _refine.ls_R_factor_R_work 0.2015 _refine.ls_R_factor_R_free 0.2452 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.7 _refine.ls_number_reflns_R_free 1121 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.950 _refine.correlation_coeff_Fo_to_Fc_free 0.933 _refine.B_iso_mean 49.987 _refine.aniso_B[1][1] -1.50 _refine.aniso_B[2][2] -1.50 _refine.aniso_B[3][3] 2.25 _refine.aniso_B[1][2] -0.75 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.272 _refine.pdbx_overall_ESU_R_Free 0.219 _refine.overall_SU_ML 0.151 _refine.overall_SU_B 11.877 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1367 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 82 _refine_hist.number_atoms_total 1450 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 35.2 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.022 ? 1399 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.664 1.949 ? 1878 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 8.558 5.000 ? 162 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.033 25.065 ? 77 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.581 15.000 ? 276 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.659 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.142 0.200 ? 197 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 1055 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.219 0.200 ? 560 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.311 0.200 ? 911 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.162 0.200 ? 89 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.245 0.200 ? 26 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.188 0.200 ? 10 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.951 1.500 ? 806 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.792 2.000 ? 1309 'X-RAY DIFFRACTION' ? r_scbond_it 2.699 3.000 ? 613 'X-RAY DIFFRACTION' ? r_scangle_it 4.162 4.500 ? 568 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.300 _refine_ls_shell.d_res_low 2.360 _refine_ls_shell.number_reflns_R_work 648 _refine_ls_shell.R_factor_R_work 0.263 _refine_ls_shell.percent_reflns_obs 84.71 _refine_ls_shell.R_factor_R_free 0.349 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 50 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 680 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2IL5 _struct.title 'Structure of Protein of Unknown Function SA2116 from Staphylococcus aureus' _struct.pdbx_descriptor 'Hypothetical protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2IL5 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;structural genomics, APC23650, hypothetical protein, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 25 ? TRP A 33 ? SER A 22 TRP A 30 1 ? 9 HELX_P HELX_P2 2 LYS A 35 ? LYS A 40 ? LYS A 32 LYS A 37 1 ? 6 HELX_P HELX_P3 3 ARG A 70 ? GLY A 72 ? ARG A 67 GLY A 69 5 ? 3 HELX_P HELX_P4 4 THR A 135 ? THR A 167 ? THR A 132 THR A 164 1 ? 33 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A PHE 43 C ? ? ? 1_555 A MSE 44 N ? ? A PHE 40 A MSE 41 1_555 ? ? ? ? ? ? ? 1.337 ? covale2 covale ? ? A MSE 44 C ? ? ? 1_555 A THR 45 N ? ? A MSE 41 A THR 42 1_555 ? ? ? ? ? ? ? 1.321 ? covale3 covale ? ? A VAL 85 C ? ? ? 1_555 A MSE 86 N ? ? A VAL 82 A MSE 83 1_555 ? ? ? ? ? ? ? 1.336 ? covale4 covale ? ? A MSE 86 C ? ? ? 1_555 A ASP 87 N ? ? A MSE 83 A ASP 84 1_555 ? ? ? ? ? ? ? 1.345 ? covale5 covale ? ? A LYS 91 C ? ? ? 1_555 A MSE 92 N ? ? A LYS 88 A MSE 89 1_555 ? ? ? ? ? ? ? 1.327 ? covale6 covale ? ? A MSE 92 C ? ? ? 1_555 A THR 93 N ? ? A MSE 89 A THR 90 1_555 ? ? ? ? ? ? ? 1.336 ? covale7 covale ? ? A GLY 95 C ? ? ? 1_555 A MSE 96 N ? ? A GLY 92 A MSE 93 1_555 ? ? ? ? ? ? ? 1.318 ? covale8 covale ? ? A MSE 96 C ? ? ? 1_555 A PRO 97 N ? ? A MSE 93 A PRO 94 1_555 ? ? ? ? ? ? ? 1.362 ? covale9 covale ? ? A GLN 119 C ? ? ? 1_555 A MSE 120 N ? ? A GLN 116 A MSE 117 1_555 ? ? ? ? ? ? ? 1.327 ? covale10 covale ? ? A MSE 120 C ? ? ? 1_555 A LEU 121 N ? ? A MSE 117 A LEU 118 1_555 ? ? ? ? ? ? ? 1.339 ? covale11 covale ? ? A ALA 149 C ? ? ? 1_555 A MSE 150 N ? ? A ALA 146 A MSE 147 1_555 ? ? ? ? ? ? ? 1.326 ? covale12 covale ? ? A MSE 150 C ? ? ? 1_555 A VAL 151 N ? ? A MSE 147 A VAL 148 1_555 ? ? ? ? ? ? ? 1.328 ? covale13 covale ? ? A LEU 156 C ? ? ? 1_555 A MSE 157 N ? ? A LEU 153 A MSE 154 1_555 ? ? ? ? ? ? ? 1.336 ? covale14 covale ? ? A MSE 157 C ? ? ? 1_555 A PHE 158 N ? ? A MSE 154 A PHE 155 1_555 ? ? ? ? ? ? ? 1.332 ? covale15 covale ? ? A LYS 160 C ? ? ? 1_555 A MSE 161 N ? ? A LYS 157 A MSE 158 1_555 ? ? ? ? ? ? ? 1.324 ? covale16 covale ? ? A MSE 161 C ? ? ? 1_555 A TYR 162 N ? ? A MSE 158 A TYR 159 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 12 ? TYR A 22 ? GLU A 9 TYR A 19 A 2 THR A 118 ? VAL A 128 ? THR A 115 VAL A 125 A 3 ASP A 104 ? GLU A 112 ? ASP A 101 GLU A 109 A 4 TYR A 89 ? ILE A 94 ? TYR A 86 ILE A 91 A 5 VAL A 74 ? VAL A 85 ? VAL A 71 VAL A 82 A 6 LYS A 62 ? GLN A 68 ? LYS A 59 GLN A 65 A 7 ASN A 50 ? ALA A 55 ? ASN A 47 ALA A 52 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 20 ? N LYS A 17 O MSE A 120 ? O MSE A 117 A 2 3 O GLN A 119 ? O GLN A 116 N PHE A 111 ? N PHE A 108 A 3 4 O ASP A 104 ? O ASP A 101 N ILE A 94 ? N ILE A 91 A 4 5 O TYR A 89 ? O TYR A 86 N VAL A 85 ? N VAL A 82 A 5 6 O ILE A 77 ? O ILE A 74 N ILE A 65 ? N ILE A 62 A 6 7 O ARG A 64 ? O ARG A 61 N GLU A 54 ? N GLU A 51 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE NA A 201' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id GLY _struct_site_gen.label_asym_id A _struct_site_gen.label_seq_id 95 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id GLY _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 92 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _database_PDB_matrix.entry_id 2IL5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2IL5 _atom_sites.fract_transf_matrix[1][1] 0.009295 _atom_sites.fract_transf_matrix[1][2] 0.005366 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010733 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025572 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 ? ? ? A . n A 1 5 ALA 5 2 ? ? ? A . n A 1 6 LYS 6 3 ? ? ? A . n A 1 7 PHE 7 4 ? ? ? A . n A 1 8 ASN 8 5 5 ASN ASN A . n A 1 9 VAL 9 6 6 VAL VAL A . n A 1 10 GLU 10 7 7 GLU GLU A . n A 1 11 ASN 11 8 8 ASN ASN A . n A 1 12 GLU 12 9 9 GLU GLU A . n A 1 13 HIS 13 10 10 HIS HIS A . n A 1 14 VAL 14 11 11 VAL VAL A . n A 1 15 GLU 15 12 12 GLU GLU A . n A 1 16 VAL 16 13 13 VAL VAL A . n A 1 17 GLU 17 14 14 GLU GLU A . n A 1 18 ILE 18 15 15 ILE ILE A . n A 1 19 GLU 19 16 16 GLU GLU A . n A 1 20 LYS 20 17 17 LYS LYS A . n A 1 21 LEU 21 18 18 LEU LEU A . n A 1 22 TYR 22 19 19 TYR TYR A . n A 1 23 LYS 23 20 20 LYS LYS A . n A 1 24 PHE 24 21 21 PHE PHE A . n A 1 25 SER 25 22 22 SER SER A . n A 1 26 PRO 26 23 23 PRO PRO A . n A 1 27 GLU 27 24 24 GLU GLU A . n A 1 28 LEU 28 25 25 LEU LEU A . n A 1 29 VAL 29 26 26 VAL VAL A . n A 1 30 TYR 30 27 27 TYR TYR A . n A 1 31 GLU 31 28 28 GLU GLU A . n A 1 32 ALA 32 29 29 ALA ALA A . n A 1 33 TRP 33 30 30 TRP TRP A . n A 1 34 THR 34 31 31 THR THR A . n A 1 35 LYS 35 32 32 LYS LYS A . n A 1 36 LYS 36 33 33 LYS LYS A . n A 1 37 ASP 37 34 34 ASP ASP A . n A 1 38 LEU 38 35 35 LEU LEU A . n A 1 39 LEU 39 36 36 LEU LEU A . n A 1 40 LYS 40 37 37 LYS LYS A . n A 1 41 GLN 41 38 38 GLN GLN A . n A 1 42 TRP 42 39 39 TRP TRP A . n A 1 43 PHE 43 40 40 PHE PHE A . n A 1 44 MSE 44 41 41 MSE MSE A . n A 1 45 THR 45 42 42 THR THR A . n A 1 46 SER 46 43 43 SER SER A . n A 1 47 ALA 47 44 44 ALA ALA A . n A 1 48 ARG 48 45 45 ARG ARG A . n A 1 49 THR 49 46 46 THR THR A . n A 1 50 ASN 50 47 47 ASN ASN A . n A 1 51 LYS 51 48 48 LYS LYS A . n A 1 52 GLU 52 49 49 GLU GLU A . n A 1 53 ILE 53 50 50 ILE ILE A . n A 1 54 GLU 54 51 51 GLU GLU A . n A 1 55 ALA 55 52 52 ALA ALA A . n A 1 56 ASP 56 53 53 ASP ASP A . n A 1 57 VAL 57 54 54 VAL VAL A . n A 1 58 LYS 58 55 55 LYS LYS A . n A 1 59 GLU 59 56 56 GLU GLU A . n A 1 60 GLY 60 57 57 GLY GLY A . n A 1 61 GLY 61 58 58 GLY GLY A . n A 1 62 LYS 62 59 59 LYS LYS A . n A 1 63 TYR 63 60 60 TYR TYR A . n A 1 64 ARG 64 61 61 ARG ARG A . n A 1 65 ILE 65 62 62 ILE ILE A . n A 1 66 VAL 66 63 63 VAL VAL A . n A 1 67 ASP 67 64 64 ASP ASP A . n A 1 68 GLN 68 65 65 GLN GLN A . n A 1 69 GLN 69 66 66 GLN GLN A . n A 1 70 ARG 70 67 67 ARG ARG A . n A 1 71 ASN 71 68 68 ASN ASN A . n A 1 72 GLY 72 69 69 GLY GLY A . n A 1 73 LYS 73 70 70 LYS LYS A . n A 1 74 VAL 74 71 71 VAL VAL A . n A 1 75 ASN 75 72 72 ASN ASN A . n A 1 76 VAL 76 73 73 VAL VAL A . n A 1 77 ILE 77 74 74 ILE ILE A . n A 1 78 GLU 78 75 75 GLU GLU A . n A 1 79 GLY 79 76 76 GLY GLY A . n A 1 80 ILE 80 77 77 ILE ILE A . n A 1 81 TYR 81 78 78 TYR TYR A . n A 1 82 GLU 82 79 79 GLU GLU A . n A 1 83 SER 83 80 80 SER SER A . n A 1 84 LEU 84 81 81 LEU LEU A . n A 1 85 VAL 85 82 82 VAL VAL A . n A 1 86 MSE 86 83 83 MSE MSE A . n A 1 87 ASP 87 84 84 ASP ASP A . n A 1 88 GLU 88 85 85 GLU GLU A . n A 1 89 TYR 89 86 86 TYR TYR A . n A 1 90 VAL 90 87 87 VAL VAL A . n A 1 91 LYS 91 88 88 LYS LYS A . n A 1 92 MSE 92 89 89 MSE MSE A . n A 1 93 THR 93 90 90 THR THR A . n A 1 94 ILE 94 91 91 ILE ILE A . n A 1 95 GLY 95 92 92 GLY GLY A . n A 1 96 MSE 96 93 93 MSE MSE A . n A 1 97 PRO 97 94 94 PRO PRO A . n A 1 98 GLY 98 95 ? ? ? A . n A 1 99 LEU 99 96 ? ? ? A . n A 1 100 SER 100 97 97 SER SER A . n A 1 101 GLU 101 98 98 GLU GLU A . n A 1 102 THR 102 99 99 THR THR A . n A 1 103 GLN 103 100 100 GLN GLN A . n A 1 104 ASP 104 101 101 ASP ASP A . n A 1 105 VAL 105 102 102 VAL VAL A . n A 1 106 ILE 106 103 103 ILE ILE A . n A 1 107 GLU 107 104 104 GLU GLU A . n A 1 108 VAL 108 105 105 VAL VAL A . n A 1 109 GLU 109 106 106 GLU GLU A . n A 1 110 PHE 110 107 107 PHE PHE A . n A 1 111 PHE 111 108 108 PHE PHE A . n A 1 112 GLU 112 109 109 GLU GLU A . n A 1 113 ARG 113 110 110 ARG ARG A . n A 1 114 GLU 114 111 111 GLU GLU A . n A 1 115 THR 115 112 112 THR THR A . n A 1 116 GLY 116 113 113 GLY GLY A . n A 1 117 GLY 117 114 114 GLY GLY A . n A 1 118 THR 118 115 115 THR THR A . n A 1 119 GLN 119 116 116 GLN GLN A . n A 1 120 MSE 120 117 117 MSE MSE A . n A 1 121 LEU 121 118 118 LEU LEU A . n A 1 122 PHE 122 119 119 PHE PHE A . n A 1 123 TYR 123 120 120 TYR TYR A . n A 1 124 TYR 124 121 121 TYR TYR A . n A 1 125 ARG 125 122 122 ARG ARG A . n A 1 126 SER 126 123 123 SER SER A . n A 1 127 LEU 127 124 124 LEU LEU A . n A 1 128 VAL 128 125 125 VAL VAL A . n A 1 129 GLU 129 126 126 GLU GLU A . n A 1 130 LYS 130 127 127 LYS LYS A . n A 1 131 GLU 131 128 128 GLU GLU A . n A 1 132 ARG 132 129 129 ARG ARG A . n A 1 133 ARG 133 130 130 ARG ARG A . n A 1 134 PHE 134 131 131 PHE PHE A . n A 1 135 THR 135 132 132 THR THR A . n A 1 136 ASN 136 133 133 ASN ASN A . n A 1 137 LEU 137 134 134 LEU LEU A . n A 1 138 GLU 138 135 135 GLU GLU A . n A 1 139 TYR 139 136 136 TYR TYR A . n A 1 140 LYS 140 137 137 LYS LYS A . n A 1 141 GLN 141 138 138 GLN GLN A . n A 1 142 LYS 142 139 139 LYS LYS A . n A 1 143 LYS 143 140 140 LYS LYS A . n A 1 144 LYS 144 141 141 LYS LYS A . n A 1 145 GLU 145 142 142 GLU GLU A . n A 1 146 TYR 146 143 143 TYR TYR A . n A 1 147 HIS 147 144 144 HIS HIS A . n A 1 148 ASP 148 145 145 ASP ASP A . n A 1 149 ALA 149 146 146 ALA ALA A . n A 1 150 MSE 150 147 147 MSE MSE A . n A 1 151 VAL 151 148 148 VAL VAL A . n A 1 152 HIS 152 149 149 HIS HIS A . n A 1 153 GLY 153 150 150 GLY GLY A . n A 1 154 PHE 154 151 151 PHE PHE A . n A 1 155 GLU 155 152 152 GLU GLU A . n A 1 156 LEU 156 153 153 LEU LEU A . n A 1 157 MSE 157 154 154 MSE MSE A . n A 1 158 PHE 158 155 155 PHE PHE A . n A 1 159 ASP 159 156 156 ASP ASP A . n A 1 160 LYS 160 157 157 LYS LYS A . n A 1 161 MSE 161 158 158 MSE MSE A . n A 1 162 TYR 162 159 159 TYR TYR A . n A 1 163 HIS 163 160 160 HIS HIS A . n A 1 164 VAL 164 161 161 VAL VAL A . n A 1 165 ILE 165 162 162 ILE ILE A . n A 1 166 GLU 166 163 163 GLU GLU A . n A 1 167 THR 167 164 164 THR THR A . n A 1 168 SER 168 165 165 SER SER A . n A 1 169 THR 169 166 166 THR THR A . n A 1 170 GLN 170 167 167 GLN GLN A . n A 1 171 GLN 171 168 168 GLN GLN A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 44 A MSE 41 ? MET SELENOMETHIONINE 2 A MSE 86 A MSE 83 ? MET SELENOMETHIONINE 3 A MSE 92 A MSE 89 ? MET SELENOMETHIONINE 4 A MSE 96 A MSE 93 ? MET SELENOMETHIONINE 5 A MSE 120 A MSE 117 ? MET SELENOMETHIONINE 6 A MSE 150 A MSE 147 ? MET SELENOMETHIONINE 7 A MSE 157 A MSE 154 ? MET SELENOMETHIONINE 8 A MSE 161 A MSE 158 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-31 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 5.8492 36.8358 5.6223 -0.0112 -0.1303 0.0347 0.0357 0.1054 -0.0662 3.1602 2.7990 3.1745 -0.6011 -0.7784 -0.0782 -0.2053 -0.2549 -0.3311 0.2115 0.0988 -0.1310 0.3528 0.2052 0.1066 'X-RAY DIFFRACTION' 2 ? refined 3.3130 41.4539 -3.9964 -0.0420 -0.1645 -0.0417 -0.0065 0.0928 -0.1256 2.0689 4.8659 2.7406 1.0612 -1.6786 -3.0582 -0.3197 0.1832 -0.4076 -0.2200 0.0055 -0.0814 0.5355 -0.0388 0.3142 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 5 A 8 A 94 A 97 ? 'X-RAY DIFFRACTION' ? 2 2 A 97 A 100 A 168 A 171 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SHELXD phasing . ? 5 CNS phasing . ? 6 ARP/wARP 'model building' . ? 7 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ;BIOMOLECULE: THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). THE BIOLOGICAL MOLECULE FOR THE PROTEIN IS UNKNOWN. ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 101 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 205 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 130 ? ? CZ A ARG 130 ? ? NH1 A ARG 130 ? ? 123.59 120.30 3.29 0.50 N 2 1 NE A ARG 130 ? ? CZ A ARG 130 ? ? NH2 A ARG 130 ? ? 116.19 120.30 -4.11 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 39 ? ? -148.42 -28.70 2 1 MSE A 41 ? ? 58.79 16.60 3 1 GLU A 85 ? ? -131.82 -43.54 4 1 THR A 112 ? ? 114.24 -116.13 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLU _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 111 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 THR _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 112 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -142.78 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MSE 1 ? A MSE 4 5 1 Y 1 A ALA 2 ? A ALA 5 6 1 Y 1 A LYS 3 ? A LYS 6 7 1 Y 1 A PHE 4 ? A PHE 7 8 1 Y 1 A GLY 95 ? A GLY 98 9 1 Y 1 A LEU 96 ? A LEU 99 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 201 201 NA NA A . C 3 HOH 1 202 1 HOH HOH A . C 3 HOH 2 203 2 HOH HOH A . C 3 HOH 3 204 3 HOH HOH A . C 3 HOH 4 205 4 HOH HOH A . C 3 HOH 5 206 5 HOH HOH A . C 3 HOH 6 207 6 HOH HOH A . C 3 HOH 7 208 7 HOH HOH A . C 3 HOH 8 209 8 HOH HOH A . C 3 HOH 9 210 9 HOH HOH A . C 3 HOH 10 211 10 HOH HOH A . C 3 HOH 11 212 11 HOH HOH A . C 3 HOH 12 213 12 HOH HOH A . C 3 HOH 13 214 13 HOH HOH A . C 3 HOH 14 215 14 HOH HOH A . C 3 HOH 15 216 15 HOH HOH A . C 3 HOH 16 217 16 HOH HOH A . C 3 HOH 17 218 17 HOH HOH A . C 3 HOH 18 219 18 HOH HOH A . C 3 HOH 19 220 19 HOH HOH A . C 3 HOH 20 221 20 HOH HOH A . C 3 HOH 21 222 21 HOH HOH A . C 3 HOH 22 223 22 HOH HOH A . C 3 HOH 23 224 23 HOH HOH A . C 3 HOH 24 225 24 HOH HOH A . C 3 HOH 25 226 25 HOH HOH A . C 3 HOH 26 227 26 HOH HOH A . C 3 HOH 27 228 27 HOH HOH A . C 3 HOH 28 229 28 HOH HOH A . C 3 HOH 29 230 29 HOH HOH A . C 3 HOH 30 231 30 HOH HOH A . C 3 HOH 31 232 31 HOH HOH A . C 3 HOH 32 233 32 HOH HOH A . C 3 HOH 33 234 33 HOH HOH A . C 3 HOH 34 235 34 HOH HOH A . C 3 HOH 35 236 35 HOH HOH A . C 3 HOH 36 237 37 HOH HOH A . C 3 HOH 37 238 38 HOH HOH A . C 3 HOH 38 239 39 HOH HOH A . C 3 HOH 39 240 40 HOH HOH A . C 3 HOH 40 241 41 HOH HOH A . C 3 HOH 41 242 42 HOH HOH A . C 3 HOH 42 243 43 HOH HOH A . C 3 HOH 43 244 44 HOH HOH A . C 3 HOH 44 245 45 HOH HOH A . C 3 HOH 45 246 46 HOH HOH A . C 3 HOH 46 247 47 HOH HOH A . C 3 HOH 47 248 48 HOH HOH A . C 3 HOH 48 249 49 HOH HOH A . C 3 HOH 49 250 50 HOH HOH A . C 3 HOH 50 251 51 HOH HOH A . C 3 HOH 51 252 52 HOH HOH A . C 3 HOH 52 253 53 HOH HOH A . C 3 HOH 53 254 54 HOH HOH A . C 3 HOH 54 255 55 HOH HOH A . C 3 HOH 55 256 56 HOH HOH A . C 3 HOH 56 257 57 HOH HOH A . C 3 HOH 57 258 58 HOH HOH A . C 3 HOH 58 259 59 HOH HOH A . C 3 HOH 59 260 60 HOH HOH A . C 3 HOH 60 261 61 HOH HOH A . C 3 HOH 61 262 62 HOH HOH A . C 3 HOH 62 263 63 HOH HOH A . C 3 HOH 63 264 64 HOH HOH A . C 3 HOH 64 265 65 HOH HOH A . C 3 HOH 65 266 66 HOH HOH A . C 3 HOH 66 267 67 HOH HOH A . C 3 HOH 67 268 68 HOH HOH A . C 3 HOH 68 269 69 HOH HOH A . C 3 HOH 69 270 71 HOH HOH A . C 3 HOH 70 271 72 HOH HOH A . C 3 HOH 71 272 73 HOH HOH A . C 3 HOH 72 273 74 HOH HOH A . C 3 HOH 73 274 75 HOH HOH A . C 3 HOH 74 275 76 HOH HOH A . C 3 HOH 75 276 77 HOH HOH A . C 3 HOH 76 277 78 HOH HOH A . C 3 HOH 77 278 79 HOH HOH A . C 3 HOH 78 279 80 HOH HOH A . C 3 HOH 79 280 81 HOH HOH A . C 3 HOH 80 281 82 HOH HOH A . C 3 HOH 81 282 83 HOH HOH A . C 3 HOH 82 283 84 HOH HOH A . #