data_2IPQ # _entry.id 2IPQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2IPQ RCSB RCSB039863 WWPDB D_1000039863 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id NYSGXRC-10172b _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2IPQ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-10-12 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ramagopal, U.A.' 1 ? 'Bonanno, J.B.' 2 ? 'Gilmore, J.' 3 ? 'Toro, R.' 4 ? 'Bain, K.T.' 5 ? 'Reyes, C.' 6 ? 'Sauder, J.M.' 7 0000-0002-0254-4955 'Burley, S.K.' 8 0000-0002-2487-9713 'Almo, S.C.' 9 ? 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 10 ? # _citation.id primary _citation.title 'Structure of C-terminal domain of Hypothetical protein STY4665' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ramagopal, U.A.' 1 ? primary 'Bonanno, J.B.' 2 ? primary 'Gilmore, J.' 3 ? primary 'Toro, R.' 4 ? primary 'Bain, K.T.' 5 ? primary 'Reyes, C.' 6 ? primary 'Sauder, J.M.' 7 ? primary 'Burley, S.K.' 8 0000-0002-2487-9713 primary 'Almo, S.C.' 9 ? primary 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 10 ? # _cell.length_a 36.281 _cell.length_b 55.039 _cell.length_c 66.729 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 2IPQ _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 2IPQ _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hypothetical protein STY4665' 15483.396 1 ? ? 'C-terminal domain, residues 395-529' ? 2 water nat water 18.015 33 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Hypothetical protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SLSSTELGDLFWSWLRDGLREGDIPVNTADACVHLTCGFVFISVPGVFFLFLKSHSRSCSSGLKESGRKEQVQAAFEK (MSE)RKHRVSDSRRFWQCCLYEEPGGRGRYKKLTGYLIK(MSE)SEIYANGNFPDDSLFLKVIN ; _entity_poly.pdbx_seq_one_letter_code_can ;SLSSTELGDLFWSWLRDGLREGDIPVNTADACVHLTCGFVFISVPGVFFLFLKSHSRSCSSGLKESGRKEQVQAAFEKMR KHRVSDSRRFWQCCLYEEPGGRGRYKKLTGYLIKMSEIYANGNFPDDSLFLKVIN ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier NYSGXRC-10172b # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LEU n 1 3 SER n 1 4 SER n 1 5 THR n 1 6 GLU n 1 7 LEU n 1 8 GLY n 1 9 ASP n 1 10 LEU n 1 11 PHE n 1 12 TRP n 1 13 SER n 1 14 TRP n 1 15 LEU n 1 16 ARG n 1 17 ASP n 1 18 GLY n 1 19 LEU n 1 20 ARG n 1 21 GLU n 1 22 GLY n 1 23 ASP n 1 24 ILE n 1 25 PRO n 1 26 VAL n 1 27 ASN n 1 28 THR n 1 29 ALA n 1 30 ASP n 1 31 ALA n 1 32 CYS n 1 33 VAL n 1 34 HIS n 1 35 LEU n 1 36 THR n 1 37 CYS n 1 38 GLY n 1 39 PHE n 1 40 VAL n 1 41 PHE n 1 42 ILE n 1 43 SER n 1 44 VAL n 1 45 PRO n 1 46 GLY n 1 47 VAL n 1 48 PHE n 1 49 PHE n 1 50 LEU n 1 51 PHE n 1 52 LEU n 1 53 LYS n 1 54 SER n 1 55 HIS n 1 56 SER n 1 57 ARG n 1 58 SER n 1 59 CYS n 1 60 SER n 1 61 SER n 1 62 GLY n 1 63 LEU n 1 64 LYS n 1 65 GLU n 1 66 SER n 1 67 GLY n 1 68 ARG n 1 69 LYS n 1 70 GLU n 1 71 GLN n 1 72 VAL n 1 73 GLN n 1 74 ALA n 1 75 ALA n 1 76 PHE n 1 77 GLU n 1 78 LYS n 1 79 MSE n 1 80 ARG n 1 81 LYS n 1 82 HIS n 1 83 ARG n 1 84 VAL n 1 85 SER n 1 86 ASP n 1 87 SER n 1 88 ARG n 1 89 ARG n 1 90 PHE n 1 91 TRP n 1 92 GLN n 1 93 CYS n 1 94 CYS n 1 95 LEU n 1 96 TYR n 1 97 GLU n 1 98 GLU n 1 99 PRO n 1 100 GLY n 1 101 GLY n 1 102 ARG n 1 103 GLY n 1 104 ARG n 1 105 TYR n 1 106 LYS n 1 107 LYS n 1 108 LEU n 1 109 THR n 1 110 GLY n 1 111 TYR n 1 112 LEU n 1 113 ILE n 1 114 LYS n 1 115 MSE n 1 116 SER n 1 117 GLU n 1 118 ILE n 1 119 TYR n 1 120 ALA n 1 121 ASN n 1 122 GLY n 1 123 ASN n 1 124 PHE n 1 125 PRO n 1 126 ASP n 1 127 ASP n 1 128 SER n 1 129 LEU n 1 130 PHE n 1 131 LEU n 1 132 LYS n 1 133 VAL n 1 134 ILE n 1 135 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Salmonella _entity_src_gen.pdbx_gene_src_gene 'STY4665, t4356' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Salmonella typhi' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 601 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'BS-pSGX4(BS)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8Z1C5_SALTI _struct_ref.pdbx_db_accession Q8Z1C5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SLSSTELGDLFWSWLRDGLREGDIPVNTADACVHLTCGFVFISVPGVFFLFLKSHSRSCSSGLKESGRKEQVQAAFEKMR KHRVSDSRRFWQCCLYEEPGGRGRYKKLTGYLIKMSEIYANGNFPDDSLFLKVIN ; _struct_ref.pdbx_align_begin 395 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2IPQ _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 135 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8Z1C5 _struct_ref_seq.db_align_beg 395 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 529 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 395 _struct_ref_seq.pdbx_auth_seq_align_end 529 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2IPQ MSE X 79 ? UNP Q8Z1C5 MET 473 'modified residue' 473 1 1 2IPQ MSE X 115 ? UNP Q8Z1C5 MET 509 'modified residue' 509 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2IPQ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_percent_sol 42.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details ;(NH4)2SO4 0.2 M, Bis-Tris pH 6.5 0.1 M, PEG 3350 50 %, Vapor diffusion, Sitting drop, temperature 298K, VAPOR DIFFUSION, SITTING DROP ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-09-28 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_wavelength_list 0.9793 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A # _reflns.entry_id 2IPQ _reflns.d_resolution_high 2.200 _reflns.d_resolution_low 30.000 _reflns.number_obs 7182 _reflns.pdbx_Rmerge_I_obs 0.066 _reflns.pdbx_netI_over_sigmaI 10.100 _reflns.pdbx_chi_squared 1.016 _reflns.pdbx_redundancy 3.000 _reflns.percent_possible_obs 99.500 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all ? _reflns.pdbx_Rsym_value 0.05 _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.28 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.491 _reflns_shell.meanI_over_sigI_obs 1.5 _reflns_shell.pdbx_Rsym_value 0.419 _reflns_shell.pdbx_chi_squared 0.428 _reflns_shell.pdbx_redundancy 2.30 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1288 _reflns_shell.percent_possible_all 98.50 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2IPQ _refine.ls_d_res_high 2.200 _refine.ls_d_res_low 25.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.540 _refine.ls_number_reflns_obs 7150 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.206 _refine.ls_R_factor_R_work 0.203 _refine.ls_R_factor_R_free 0.27 _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 336 _refine.B_iso_mean 51.887 _refine.aniso_B[1][1] 0.710 _refine.aniso_B[2][2] -1.590 _refine.aniso_B[3][3] 0.880 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.926 _refine.pdbx_overall_ESU_R 0.282 _refine.pdbx_overall_ESU_R_Free 0.236 _refine.overall_SU_ML 0.183 _refine.overall_SU_B 14.574 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I 0 _refine.ls_number_reflns_all 7150 _refine.ls_R_factor_all 0.206 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 978 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 1011 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 25.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1026 0.014 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1382 1.344 1.945 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 124 7.711 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 48 27.801 22.083 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 177 23.137 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 9 25.401 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 143 0.112 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 783 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 394 0.248 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 691 0.328 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 45 0.214 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 37 0.299 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 7 0.156 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 625 2.133 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 982 2.759 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 457 4.491 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 400 6.108 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 94.380 _refine_ls_shell.number_reflns_R_work 462 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.232 _refine_ls_shell.R_factor_R_free 0.235 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 25 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 487 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2IPQ _struct.title 'Crystal structure of C-terminal domain of Salmonella Enterica protein STY4665, PFAM DUF1528' _struct.pdbx_descriptor 'Structure of C-terminal domain of Hypothetical protein STY4665' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2IPQ _struct_keywords.text ;structural genomics, UNKNOWN FUNCTION, PSI, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC ; _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 3 ? GLU A 21 ? SER X 397 GLU X 415 1 ? 19 HELX_P HELX_P2 2 PRO A 45 ? HIS A 55 ? PRO X 439 HIS X 449 1 ? 11 HELX_P HELX_P3 3 GLY A 67 ? LYS A 78 ? GLY X 461 LYS X 472 1 ? 12 HELX_P HELX_P4 4 MSE A 115 ? TYR A 119 ? MSE X 509 TYR X 513 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LYS 78 C ? ? ? 1_555 A MSE 79 N ? ? X LYS 472 X MSE 473 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A MSE 79 C ? ? ? 1_555 A ARG 80 N ? ? X MSE 473 X ARG 474 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? A LYS 114 C ? ? ? 1_555 A MSE 115 N ? ? X LYS 508 X MSE 509 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale4 covale both ? A MSE 115 C ? ? ? 1_555 A SER 116 N ? ? X MSE 509 X SER 510 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id VAL _struct_mon_prot_cis.label_seq_id 44 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id VAL _struct_mon_prot_cis.auth_seq_id 438 _struct_mon_prot_cis.auth_asym_id X _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 45 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 439 _struct_mon_prot_cis.pdbx_auth_asym_id_2 X _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 6.51 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 33 ? THR A 36 ? VAL X 427 THR X 430 A 2 PHE A 39 ? SER A 43 ? PHE X 433 SER X 437 A 3 ARG A 102 ? LYS A 114 ? ARG X 496 LYS X 508 A 4 TRP A 91 ? GLU A 98 ? TRP X 485 GLU X 492 A 5 LEU A 131 ? VAL A 133 ? LEU X 525 VAL X 527 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N HIS A 34 ? N HIS X 428 O PHE A 41 ? O PHE X 435 A 2 3 N VAL A 40 ? N VAL X 434 O ILE A 113 ? O ILE X 507 A 3 4 O LYS A 106 ? O LYS X 500 N LEU A 95 ? N LEU X 489 A 4 5 N CYS A 94 ? N CYS X 488 O LYS A 132 ? O LYS X 526 # _atom_sites.entry_id 2IPQ _atom_sites.fract_transf_matrix[1][1] 0.027563 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018169 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014986 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 395 ? ? ? X . n A 1 2 LEU 2 396 396 LEU LEU X . n A 1 3 SER 3 397 397 SER SER X . n A 1 4 SER 4 398 398 SER SER X . n A 1 5 THR 5 399 399 THR THR X . n A 1 6 GLU 6 400 400 GLU GLU X . n A 1 7 LEU 7 401 401 LEU LEU X . n A 1 8 GLY 8 402 402 GLY GLY X . n A 1 9 ASP 9 403 403 ASP ASP X . n A 1 10 LEU 10 404 404 LEU LEU X . n A 1 11 PHE 11 405 405 PHE PHE X . n A 1 12 TRP 12 406 406 TRP TRP X . n A 1 13 SER 13 407 407 SER SER X . n A 1 14 TRP 14 408 408 TRP TRP X . n A 1 15 LEU 15 409 409 LEU LEU X . n A 1 16 ARG 16 410 410 ARG ARG X . n A 1 17 ASP 17 411 411 ASP ASP X . n A 1 18 GLY 18 412 412 GLY GLY X . n A 1 19 LEU 19 413 413 LEU LEU X . n A 1 20 ARG 20 414 414 ARG ARG X . n A 1 21 GLU 21 415 415 GLU GLU X . n A 1 22 GLY 22 416 416 GLY GLY X . n A 1 23 ASP 23 417 417 ASP ASP X . n A 1 24 ILE 24 418 418 ILE ILE X . n A 1 25 PRO 25 419 419 PRO PRO X . n A 1 26 VAL 26 420 420 VAL VAL X . n A 1 27 ASN 27 421 421 ASN ASN X . n A 1 28 THR 28 422 422 THR THR X . n A 1 29 ALA 29 423 423 ALA ALA X . n A 1 30 ASP 30 424 424 ASP ASP X . n A 1 31 ALA 31 425 425 ALA ALA X . n A 1 32 CYS 32 426 426 CYS CYS X . n A 1 33 VAL 33 427 427 VAL VAL X . n A 1 34 HIS 34 428 428 HIS HIS X . n A 1 35 LEU 35 429 429 LEU LEU X . n A 1 36 THR 36 430 430 THR THR X . n A 1 37 CYS 37 431 431 CYS CYS X . n A 1 38 GLY 38 432 432 GLY GLY X . n A 1 39 PHE 39 433 433 PHE PHE X . n A 1 40 VAL 40 434 434 VAL VAL X . n A 1 41 PHE 41 435 435 PHE PHE X . n A 1 42 ILE 42 436 436 ILE ILE X . n A 1 43 SER 43 437 437 SER SER X . n A 1 44 VAL 44 438 438 VAL VAL X . n A 1 45 PRO 45 439 439 PRO PRO X . n A 1 46 GLY 46 440 440 GLY GLY X . n A 1 47 VAL 47 441 441 VAL VAL X . n A 1 48 PHE 48 442 442 PHE PHE X . n A 1 49 PHE 49 443 443 PHE PHE X . n A 1 50 LEU 50 444 444 LEU LEU X . n A 1 51 PHE 51 445 445 PHE PHE X . n A 1 52 LEU 52 446 446 LEU LEU X . n A 1 53 LYS 53 447 447 LYS LYS X . n A 1 54 SER 54 448 448 SER SER X . n A 1 55 HIS 55 449 449 HIS HIS X . n A 1 56 SER 56 450 ? ? ? X . n A 1 57 ARG 57 451 ? ? ? X . n A 1 58 SER 58 452 ? ? ? X . n A 1 59 CYS 59 453 ? ? ? X . n A 1 60 SER 60 454 ? ? ? X . n A 1 61 SER 61 455 ? ? ? X . n A 1 62 GLY 62 456 ? ? ? X . n A 1 63 LEU 63 457 ? ? ? X . n A 1 64 LYS 64 458 ? ? ? X . n A 1 65 GLU 65 459 ? ? ? X . n A 1 66 SER 66 460 ? ? ? X . n A 1 67 GLY 67 461 461 GLY GLY X . n A 1 68 ARG 68 462 462 ARG ARG X . n A 1 69 LYS 69 463 463 LYS LYS X . n A 1 70 GLU 70 464 464 GLU GLU X . n A 1 71 GLN 71 465 465 GLN GLN X . n A 1 72 VAL 72 466 466 VAL VAL X . n A 1 73 GLN 73 467 467 GLN GLN X . n A 1 74 ALA 74 468 468 ALA ALA X . n A 1 75 ALA 75 469 469 ALA ALA X . n A 1 76 PHE 76 470 470 PHE PHE X . n A 1 77 GLU 77 471 471 GLU GLU X . n A 1 78 LYS 78 472 472 LYS LYS X . n A 1 79 MSE 79 473 473 MSE MSE X . n A 1 80 ARG 80 474 474 ARG ARG X . n A 1 81 LYS 81 475 475 LYS LYS X . n A 1 82 HIS 82 476 476 HIS HIS X . n A 1 83 ARG 83 477 477 ARG ARG X . n A 1 84 VAL 84 478 478 VAL VAL X . n A 1 85 SER 85 479 479 SER SER X . n A 1 86 ASP 86 480 480 ASP ASP X . n A 1 87 SER 87 481 481 SER SER X . n A 1 88 ARG 88 482 482 ARG ARG X . n A 1 89 ARG 89 483 483 ARG ARG X . n A 1 90 PHE 90 484 484 PHE PHE X . n A 1 91 TRP 91 485 485 TRP TRP X . n A 1 92 GLN 92 486 486 GLN GLN X . n A 1 93 CYS 93 487 487 CYS CYS X . n A 1 94 CYS 94 488 488 CYS CYS X . n A 1 95 LEU 95 489 489 LEU LEU X . n A 1 96 TYR 96 490 490 TYR TYR X . n A 1 97 GLU 97 491 491 GLU GLU X . n A 1 98 GLU 98 492 492 GLU GLU X . n A 1 99 PRO 99 493 493 PRO PRO X . n A 1 100 GLY 100 494 494 GLY GLY X . n A 1 101 GLY 101 495 495 GLY GLY X . n A 1 102 ARG 102 496 496 ARG ARG X . n A 1 103 GLY 103 497 497 GLY GLY X . n A 1 104 ARG 104 498 498 ARG ARG X . n A 1 105 TYR 105 499 499 TYR TYR X . n A 1 106 LYS 106 500 500 LYS LYS X . n A 1 107 LYS 107 501 501 LYS LYS X . n A 1 108 LEU 108 502 502 LEU LEU X . n A 1 109 THR 109 503 503 THR THR X . n A 1 110 GLY 110 504 504 GLY GLY X . n A 1 111 TYR 111 505 505 TYR TYR X . n A 1 112 LEU 112 506 506 LEU LEU X . n A 1 113 ILE 113 507 507 ILE ILE X . n A 1 114 LYS 114 508 508 LYS LYS X . n A 1 115 MSE 115 509 509 MSE MSE X . n A 1 116 SER 116 510 510 SER SER X . n A 1 117 GLU 117 511 511 GLU GLU X . n A 1 118 ILE 118 512 512 ILE ILE X . n A 1 119 TYR 119 513 513 TYR TYR X . n A 1 120 ALA 120 514 ? ? ? X . n A 1 121 ASN 121 515 515 ASN ALA X . n A 1 122 GLY 122 516 516 GLY GLY X . n A 1 123 ASN 123 517 517 ASN ASN X . n A 1 124 PHE 124 518 518 PHE PHE X . n A 1 125 PRO 125 519 519 PRO PRO X . n A 1 126 ASP 126 520 520 ASP ASP X . n A 1 127 ASP 127 521 521 ASP ASP X . n A 1 128 SER 128 522 522 SER SER X . n A 1 129 LEU 129 523 523 LEU LEU X . n A 1 130 PHE 130 524 524 PHE PHE X . n A 1 131 LEU 131 525 525 LEU LEU X . n A 1 132 LYS 132 526 526 LYS LYS X . n A 1 133 VAL 133 527 527 VAL VAL X . n A 1 134 ILE 134 528 528 ILE ILE X . n A 1 135 ASN 135 529 ? ? ? X . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 2 2 HOH HOH X . B 2 HOH 2 3 3 HOH HOH X . B 2 HOH 3 4 4 HOH HOH X . B 2 HOH 4 6 6 HOH HOH X . B 2 HOH 5 8 8 HOH HOH X . B 2 HOH 6 9 9 HOH HOH X . B 2 HOH 7 10 10 HOH HOH X . B 2 HOH 8 11 11 HOH HOH X . B 2 HOH 9 12 12 HOH HOH X . B 2 HOH 10 13 13 HOH HOH X . B 2 HOH 11 15 15 HOH HOH X . B 2 HOH 12 16 16 HOH HOH X . B 2 HOH 13 17 17 HOH HOH X . B 2 HOH 14 18 18 HOH HOH X . B 2 HOH 15 19 19 HOH HOH X . B 2 HOH 16 20 20 HOH HOH X . B 2 HOH 17 21 21 HOH HOH X . B 2 HOH 18 23 23 HOH HOH X . B 2 HOH 19 25 25 HOH HOH X . B 2 HOH 20 26 26 HOH HOH X . B 2 HOH 21 27 27 HOH HOH X . B 2 HOH 22 28 28 HOH HOH X . B 2 HOH 23 29 29 HOH HOH X . B 2 HOH 24 30 30 HOH HOH X . B 2 HOH 25 31 31 HOH HOH X . B 2 HOH 26 34 34 HOH HOH X . B 2 HOH 27 35 35 HOH HOH X . B 2 HOH 28 36 36 HOH HOH X . B 2 HOH 29 37 37 HOH HOH X . B 2 HOH 30 38 38 HOH HOH X . B 2 HOH 31 39 39 HOH HOH X . B 2 HOH 32 40 40 HOH HOH X . B 2 HOH 33 41 41 HOH HOH X . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 79 X MSE 473 ? MET SELENOMETHIONINE 2 A MSE 115 X MSE 509 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-11-07 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2018-11-14 6 'Structure model' 1 5 2021-02-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Structure summary' 7 6 'Structure model' 'Database references' 8 6 'Structure model' 'Derived calculations' 9 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' audit_author 3 6 'Structure model' audit_author 4 6 'Structure model' citation_author 5 6 'Structure model' struct_conn 6 6 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.date' 5 4 'Structure model' '_software.language' 6 4 'Structure model' '_software.location' 7 4 'Structure model' '_software.name' 8 4 'Structure model' '_software.type' 9 4 'Structure model' '_software.version' 10 5 'Structure model' '_audit_author.identifier_ORCID' 11 6 'Structure model' '_audit_author.identifier_ORCID' 12 6 'Structure model' '_citation_author.identifier_ORCID' 13 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 14 6 'Structure model' '_struct_ref_seq_dif.details' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.200 _diffrn_reflns.pdbx_d_res_low 30.000 _diffrn_reflns.pdbx_number_obs 13020 _diffrn_reflns.pdbx_Rmerge_I_obs 0.066 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.02 _diffrn_reflns.av_sigmaI_over_netI 10.10 _diffrn_reflns.pdbx_redundancy 3.00 _diffrn_reflns.pdbx_percent_possible_obs 99.50 _diffrn_reflns.number 38459 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 4.73 30.00 ? ? 0.037 ? 1.527 2.90 98.00 1 3.76 4.73 ? ? 0.048 ? 1.736 3.00 99.20 1 3.29 3.76 ? ? 0.057 ? 1.772 3.00 99.50 1 2.99 3.29 ? ? 0.083 ? 1.375 3.10 99.80 1 2.77 2.99 ? ? 0.113 ? 0.897 3.10 100.00 1 2.61 2.77 ? ? 0.181 ? 0.680 3.10 100.00 1 2.48 2.61 ? ? 0.236 ? 0.581 3.10 100.00 1 2.37 2.48 ? ? 0.366 ? 0.527 3.10 100.00 1 2.28 2.37 ? ? 0.419 ? 0.496 2.90 99.90 1 2.20 2.28 ? ? 0.491 ? 0.428 2.30 98.50 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -1.2400 18.1060 -15.7120 -0.4321 -0.2193 -0.1765 0.0393 -0.0572 0.0261 6.9600 7.7515 4.9783 1.7075 -3.2712 -1.5049 0.0979 -0.0709 -0.0270 0.4701 0.3753 -0.0095 -0.2646 -0.2494 -0.1604 'X-RAY DIFFRACTION' 2 ? refined -1.0550 11.0870 -10.7700 -0.3747 -0.1364 -0.1481 0.0330 -0.0363 -0.0094 7.0551 4.7991 4.7377 0.7641 -3.3192 -0.1587 -0.0442 -0.0402 0.0844 -0.2630 -0.0325 -0.2886 0.1843 -0.1042 0.0894 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 5 A 54 ALL X 399 X 448 'X-RAY DIFFRACTION' ? 2 2 A 67 A 134 ALL X 461 X 528 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 CBASS . ? ? ? ? 'data collection' ? ? ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 SOLVE . ? ? ? ? phasing ? ? ? 7 RESOLVE . ? ? ? ? phasing ? ? ? 8 PHENIX . ? ? ? ? phasing ? ? ? 9 CCP4 . ? ? ? ? phasing ? ? ? 10 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ;BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN. THE AUTHOR STATES THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. ; # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CZ _pdbx_validate_rmsd_bond.auth_asym_id_1 X _pdbx_validate_rmsd_bond.auth_comp_id_1 ARG _pdbx_validate_rmsd_bond.auth_seq_id_1 474 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 NH2 _pdbx_validate_rmsd_bond.auth_asym_id_2 X _pdbx_validate_rmsd_bond.auth_comp_id_2 ARG _pdbx_validate_rmsd_bond.auth_seq_id_2 474 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.408 _pdbx_validate_rmsd_bond.bond_target_value 1.326 _pdbx_validate_rmsd_bond.bond_deviation 0.082 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.013 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS X 431 ? B 33.20 60.59 2 1 SER X 481 ? ? 81.12 -10.06 3 1 ILE X 512 ? ? -104.67 -60.03 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 X GLU 400 ? CG ? A GLU 6 CG 2 1 Y 1 X GLU 400 ? CD ? A GLU 6 CD 3 1 Y 1 X GLU 400 ? OE1 ? A GLU 6 OE1 4 1 Y 1 X GLU 400 ? OE2 ? A GLU 6 OE2 5 1 Y 1 X ASN 515 ? CG ? A ASN 121 CG 6 1 Y 1 X ASN 515 ? OD1 ? A ASN 121 OD1 7 1 Y 1 X ASN 515 ? ND2 ? A ASN 121 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 X SER 395 ? A SER 1 2 1 Y 1 X SER 450 ? A SER 56 3 1 Y 1 X ARG 451 ? A ARG 57 4 1 Y 1 X SER 452 ? A SER 58 5 1 Y 1 X CYS 453 ? A CYS 59 6 1 Y 1 X SER 454 ? A SER 60 7 1 Y 1 X SER 455 ? A SER 61 8 1 Y 1 X GLY 456 ? A GLY 62 9 1 Y 1 X LEU 457 ? A LEU 63 10 1 Y 1 X LYS 458 ? A LYS 64 11 1 Y 1 X GLU 459 ? A GLU 65 12 1 Y 1 X SER 460 ? A SER 66 13 1 Y 1 X ALA 514 ? A ALA 120 14 1 Y 1 X ASN 529 ? A ASN 135 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #