data_2IU1 # _entry.id 2IU1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2IU1 PDBE EBI-28871 WWPDB D_1290028871 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2IU1 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2006-05-26 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bieniossek, C.' 1 'Schuetz, P.' 2 'Baumann, U.' 3 # _citation.id primary _citation.title 'The Crystal Structure of the Carboxy-Terminal Domain of Human Translation Initiation Factor Eif5.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 360 _citation.page_first 457 _citation.page_last ? _citation.year 2006 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16781736 _citation.pdbx_database_id_DOI 10.1016/J.JMB.2006.05.021 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bieniossek, C.' 1 ? primary 'Schutz, P.' 2 ? primary 'Bumann, M.' 3 ? primary 'Limacher, A.' 4 ? primary 'Uson, I.' 5 ? primary 'Baumann, U.' 6 ? # _cell.entry_id 2IU1 _cell.length_a 32.137 _cell.length_b 70.254 _cell.length_c 81.705 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IU1 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'EUKARYOTIC TRANSLATION INITIATION FACTOR 5' 24442.861 1 ? ? 'C-TERMINAL DOMAIN RESIDUES 232-431' ? 2 water nat water 18.015 139 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name EIF5 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;LERTIEERVNILFDFVKKKKEEGVIDSSDKEIVAEAERLDVKAMGPLVLTEVLFNEKIREQIKKYRRHFLRFCHNNKKAQ RYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIKWLKEAEEESSG GEEEDEDENIEVVYSKLESVPKVETVKSDNKDDDIDIDAILEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;LERTIEERVNILFDFVKKKKEEGVIDSSDKEIVAEAERLDVKAMGPLVLTEVLFNEKIREQIKKYRRHFLRFCHNNKKAQ RYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIKWLKEAEEESSG GEEEDEDENIEVVYSKLESVPKVETVKSDNKDDDIDIDAILEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 GLU n 1 3 ARG n 1 4 THR n 1 5 ILE n 1 6 GLU n 1 7 GLU n 1 8 ARG n 1 9 VAL n 1 10 ASN n 1 11 ILE n 1 12 LEU n 1 13 PHE n 1 14 ASP n 1 15 PHE n 1 16 VAL n 1 17 LYS n 1 18 LYS n 1 19 LYS n 1 20 LYS n 1 21 GLU n 1 22 GLU n 1 23 GLY n 1 24 VAL n 1 25 ILE n 1 26 ASP n 1 27 SER n 1 28 SER n 1 29 ASP n 1 30 LYS n 1 31 GLU n 1 32 ILE n 1 33 VAL n 1 34 ALA n 1 35 GLU n 1 36 ALA n 1 37 GLU n 1 38 ARG n 1 39 LEU n 1 40 ASP n 1 41 VAL n 1 42 LYS n 1 43 ALA n 1 44 MET n 1 45 GLY n 1 46 PRO n 1 47 LEU n 1 48 VAL n 1 49 LEU n 1 50 THR n 1 51 GLU n 1 52 VAL n 1 53 LEU n 1 54 PHE n 1 55 ASN n 1 56 GLU n 1 57 LYS n 1 58 ILE n 1 59 ARG n 1 60 GLU n 1 61 GLN n 1 62 ILE n 1 63 LYS n 1 64 LYS n 1 65 TYR n 1 66 ARG n 1 67 ARG n 1 68 HIS n 1 69 PHE n 1 70 LEU n 1 71 ARG n 1 72 PHE n 1 73 CYS n 1 74 HIS n 1 75 ASN n 1 76 ASN n 1 77 LYS n 1 78 LYS n 1 79 ALA n 1 80 GLN n 1 81 ARG n 1 82 TYR n 1 83 LEU n 1 84 LEU n 1 85 HIS n 1 86 GLY n 1 87 LEU n 1 88 GLU n 1 89 CYS n 1 90 VAL n 1 91 VAL n 1 92 ALA n 1 93 MET n 1 94 HIS n 1 95 GLN n 1 96 ALA n 1 97 GLN n 1 98 LEU n 1 99 ILE n 1 100 SER n 1 101 LYS n 1 102 ILE n 1 103 PRO n 1 104 HIS n 1 105 ILE n 1 106 LEU n 1 107 LYS n 1 108 GLU n 1 109 MET n 1 110 TYR n 1 111 ASP n 1 112 ALA n 1 113 ASP n 1 114 LEU n 1 115 LEU n 1 116 GLU n 1 117 GLU n 1 118 GLU n 1 119 VAL n 1 120 ILE n 1 121 ILE n 1 122 SER n 1 123 TRP n 1 124 SER n 1 125 GLU n 1 126 LYS n 1 127 ALA n 1 128 SER n 1 129 LYS n 1 130 LYS n 1 131 TYR n 1 132 VAL n 1 133 SER n 1 134 LYS n 1 135 GLU n 1 136 LEU n 1 137 ALA n 1 138 LYS n 1 139 GLU n 1 140 ILE n 1 141 ARG n 1 142 VAL n 1 143 LYS n 1 144 ALA n 1 145 GLU n 1 146 PRO n 1 147 PHE n 1 148 ILE n 1 149 LYS n 1 150 TRP n 1 151 LEU n 1 152 LYS n 1 153 GLU n 1 154 ALA n 1 155 GLU n 1 156 GLU n 1 157 GLU n 1 158 SER n 1 159 SER n 1 160 GLY n 1 161 GLY n 1 162 GLU n 1 163 GLU n 1 164 GLU n 1 165 ASP n 1 166 GLU n 1 167 ASP n 1 168 GLU n 1 169 ASN n 1 170 ILE n 1 171 GLU n 1 172 VAL n 1 173 VAL n 1 174 TYR n 1 175 SER n 1 176 LYS n 1 177 LEU n 1 178 GLU n 1 179 SER n 1 180 VAL n 1 181 PRO n 1 182 LYS n 1 183 VAL n 1 184 GLU n 1 185 THR n 1 186 VAL n 1 187 LYS n 1 188 SER n 1 189 ASP n 1 190 ASN n 1 191 LYS n 1 192 ASP n 1 193 ASP n 1 194 ASP n 1 195 ILE n 1 196 ASP n 1 197 ILE n 1 198 ASP n 1 199 ALA n 1 200 ILE n 1 201 LEU n 1 202 GLU n 1 203 HIS n 1 204 HIS n 1 205 HIS n 1 206 HIS n 1 207 HIS n 1 208 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET-22 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP IF5_HUMAN 1 ? ? P55010 ? 2 PDB 2IU1 1 ? ? 2IU1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2IU1 A 1 ? 200 ? P55010 232 ? 431 ? 232 431 2 2 2IU1 A 201 ? 208 ? 2IU1 432 ? 439 ? 432 439 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2IU1 LEU A 177 ? UNP P55010 ALA 408 conflict 408 1 1 2IU1 GLU A 178 ? UNP P55010 ALA 409 conflict 409 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2IU1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.89 _exptl_crystal.density_percent_sol 34.81 _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.2 M MGCL2, 0.1 M TRIS PH 8.5, 25% PEG 3350, 20 DEG C' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2004-12-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.008 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength 1.008 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2IU1 _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 1.800 _reflns.number_obs 104040 _reflns.number_all ? _reflns.percent_possible_obs 98.4 _reflns.pdbx_Rmerge_I_obs 0.06000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 27.6000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.900 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.91 _reflns_shell.percent_possible_all 97.4 _reflns_shell.Rmerge_I_obs 0.08000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 8.500 _reflns_shell.pdbx_redundancy 5.50 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2IU1 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16243 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.188 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.185 _refine.ls_R_factor_R_free 0.221 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.300 _refine.ls_number_reflns_R_free 1287 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.922 _refine.B_iso_mean 20.80 _refine.aniso_B[1][1] -0.42000 _refine.aniso_B[2][2] -0.10000 _refine.aniso_B[3][3] 0.53000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. THE DISORDERED AA-BOX2 RESIDUES 385 - 397 WERE MODELED BY MODELLER FISER AND SALI, PROT SCI 9, P1753- 1773, 2000. OCCUPANCIES SET TO 0. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.131 _refine.pdbx_overall_ESU_R_Free 0.124 _refine.overall_SU_ML 0.075 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.783 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1473 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 139 _refine_hist.number_atoms_total 1612 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.022 ? 1390 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.180 1.979 ? 1860 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.407 5.000 ? 162 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.004 24.545 ? 66 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.449 15.000 ? 297 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 22.588 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.090 0.200 ? 208 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.002 0.020 ? 997 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.228 0.200 ? 694 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.318 0.200 ? 977 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.199 0.200 ? 105 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.192 0.200 ? 22 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.138 0.200 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.175 3.500 ? 835 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.539 3.000 ? 1328 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.309 4.000 ? 610 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.705 5.500 ? 532 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.85 _refine_ls_shell.number_reflns_R_work 1171 _refine_ls_shell.R_factor_R_work 0.2020 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2470 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 88 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2IU1 _struct.title 'Crystal structure of eIF5 C-terminal domain' _struct.pdbx_descriptor 'EUKARYOTIC TRANSLATION INITIATION FACTOR 5' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2IU1 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;MFC, EIF5, GTP-BINDING, PHOSPHORYLATION, PROTEIN BIOSYNTHESIS, TRANSLATION INITITATION, INITIATION FACTOR, NUCLEOTIDE-BINDING, TRANSCRIPTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 4 ? GLU A 22 ? THR A 235 GLU A 253 1 ? 19 HELX_P HELX_P2 2 VAL A 24 ? SER A 27 ? VAL A 255 SER A 258 5 ? 4 HELX_P HELX_P3 3 SER A 28 ? LEU A 39 ? SER A 259 LEU A 270 1 ? 12 HELX_P HELX_P4 4 VAL A 41 ? ALA A 43 ? VAL A 272 ALA A 274 5 ? 3 HELX_P HELX_P5 5 MET A 44 ? PHE A 54 ? MET A 275 PHE A 285 1 ? 11 HELX_P HELX_P6 6 LYS A 57 ? TYR A 65 ? LYS A 288 TYR A 296 1 ? 9 HELX_P HELX_P7 7 TYR A 65 ? HIS A 74 ? TYR A 296 HIS A 305 1 ? 10 HELX_P HELX_P8 8 ASN A 76 ? HIS A 94 ? ASN A 307 HIS A 325 1 ? 19 HELX_P HELX_P9 9 HIS A 94 ? ILE A 99 ? HIS A 325 ILE A 330 1 ? 6 HELX_P HELX_P10 10 LYS A 101 ? ALA A 112 ? LYS A 332 ALA A 343 1 ? 12 HELX_P HELX_P11 11 GLU A 116 ? LYS A 126 ? GLU A 347 LYS A 357 1 ? 11 HELX_P HELX_P12 12 SER A 133 ? GLU A 153 ? SER A 364 GLU A 384 1 ? 21 HELX_P HELX_P13 13 GLU A 168 ? GLU A 178 ? GLU A 399 GLU A 409 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 2IU1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2IU1 _atom_sites.fract_transf_matrix[1][1] 0.031117 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014234 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012239 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 232 232 LEU LEU A . n A 1 2 GLU 2 233 233 GLU GLU A . n A 1 3 ARG 3 234 234 ARG ARG A . n A 1 4 THR 4 235 235 THR THR A . n A 1 5 ILE 5 236 236 ILE ILE A . n A 1 6 GLU 6 237 237 GLU GLU A . n A 1 7 GLU 7 238 238 GLU GLU A . n A 1 8 ARG 8 239 239 ARG ARG A . n A 1 9 VAL 9 240 240 VAL VAL A . n A 1 10 ASN 10 241 241 ASN ASN A . n A 1 11 ILE 11 242 242 ILE ILE A . n A 1 12 LEU 12 243 243 LEU LEU A . n A 1 13 PHE 13 244 244 PHE PHE A . n A 1 14 ASP 14 245 245 ASP ASP A . n A 1 15 PHE 15 246 246 PHE PHE A . n A 1 16 VAL 16 247 247 VAL VAL A . n A 1 17 LYS 17 248 248 LYS LYS A . n A 1 18 LYS 18 249 249 LYS LYS A . n A 1 19 LYS 19 250 250 LYS LYS A . n A 1 20 LYS 20 251 251 LYS LYS A . n A 1 21 GLU 21 252 252 GLU GLU A . n A 1 22 GLU 22 253 253 GLU GLU A . n A 1 23 GLY 23 254 254 GLY GLY A . n A 1 24 VAL 24 255 255 VAL VAL A . n A 1 25 ILE 25 256 256 ILE ILE A . n A 1 26 ASP 26 257 257 ASP ASP A . n A 1 27 SER 27 258 258 SER SER A . n A 1 28 SER 28 259 259 SER SER A . n A 1 29 ASP 29 260 260 ASP ASP A . n A 1 30 LYS 30 261 261 LYS LYS A . n A 1 31 GLU 31 262 262 GLU GLU A . n A 1 32 ILE 32 263 263 ILE ILE A . n A 1 33 VAL 33 264 264 VAL VAL A . n A 1 34 ALA 34 265 265 ALA ALA A . n A 1 35 GLU 35 266 266 GLU GLU A . n A 1 36 ALA 36 267 267 ALA ALA A . n A 1 37 GLU 37 268 268 GLU GLU A . n A 1 38 ARG 38 269 269 ARG ARG A . n A 1 39 LEU 39 270 270 LEU LEU A . n A 1 40 ASP 40 271 271 ASP ASP A . n A 1 41 VAL 41 272 272 VAL VAL A . n A 1 42 LYS 42 273 273 LYS LYS A . n A 1 43 ALA 43 274 274 ALA ALA A . n A 1 44 MET 44 275 275 MET MET A . n A 1 45 GLY 45 276 276 GLY GLY A . n A 1 46 PRO 46 277 277 PRO PRO A . n A 1 47 LEU 47 278 278 LEU LEU A . n A 1 48 VAL 48 279 279 VAL VAL A . n A 1 49 LEU 49 280 280 LEU LEU A . n A 1 50 THR 50 281 281 THR THR A . n A 1 51 GLU 51 282 282 GLU GLU A . n A 1 52 VAL 52 283 283 VAL VAL A . n A 1 53 LEU 53 284 284 LEU LEU A . n A 1 54 PHE 54 285 285 PHE PHE A . n A 1 55 ASN 55 286 286 ASN ASN A . n A 1 56 GLU 56 287 287 GLU GLU A . n A 1 57 LYS 57 288 288 LYS LYS A . n A 1 58 ILE 58 289 289 ILE ILE A . n A 1 59 ARG 59 290 290 ARG ARG A . n A 1 60 GLU 60 291 291 GLU GLU A . n A 1 61 GLN 61 292 292 GLN GLN A . n A 1 62 ILE 62 293 293 ILE ILE A . n A 1 63 LYS 63 294 294 LYS LYS A . n A 1 64 LYS 64 295 295 LYS LYS A . n A 1 65 TYR 65 296 296 TYR TYR A . n A 1 66 ARG 66 297 297 ARG ARG A . n A 1 67 ARG 67 298 298 ARG ARG A . n A 1 68 HIS 68 299 299 HIS HIS A . n A 1 69 PHE 69 300 300 PHE PHE A . n A 1 70 LEU 70 301 301 LEU LEU A . n A 1 71 ARG 71 302 302 ARG ARG A . n A 1 72 PHE 72 303 303 PHE PHE A . n A 1 73 CYS 73 304 304 CYS CYS A . n A 1 74 HIS 74 305 305 HIS HIS A . n A 1 75 ASN 75 306 306 ASN ASN A . n A 1 76 ASN 76 307 307 ASN ASN A . n A 1 77 LYS 77 308 308 LYS LYS A . n A 1 78 LYS 78 309 309 LYS LYS A . n A 1 79 ALA 79 310 310 ALA ALA A . n A 1 80 GLN 80 311 311 GLN GLN A . n A 1 81 ARG 81 312 312 ARG ARG A . n A 1 82 TYR 82 313 313 TYR TYR A . n A 1 83 LEU 83 314 314 LEU LEU A . n A 1 84 LEU 84 315 315 LEU LEU A . n A 1 85 HIS 85 316 316 HIS HIS A . n A 1 86 GLY 86 317 317 GLY GLY A . n A 1 87 LEU 87 318 318 LEU LEU A . n A 1 88 GLU 88 319 319 GLU GLU A . n A 1 89 CYS 89 320 320 CYS CYS A . n A 1 90 VAL 90 321 321 VAL VAL A . n A 1 91 VAL 91 322 322 VAL VAL A . n A 1 92 ALA 92 323 323 ALA ALA A . n A 1 93 MET 93 324 324 MET MET A . n A 1 94 HIS 94 325 325 HIS HIS A . n A 1 95 GLN 95 326 326 GLN GLN A . n A 1 96 ALA 96 327 327 ALA ALA A . n A 1 97 GLN 97 328 328 GLN GLN A . n A 1 98 LEU 98 329 329 LEU LEU A . n A 1 99 ILE 99 330 330 ILE ILE A . n A 1 100 SER 100 331 331 SER SER A . n A 1 101 LYS 101 332 332 LYS LYS A . n A 1 102 ILE 102 333 333 ILE ILE A . n A 1 103 PRO 103 334 334 PRO PRO A . n A 1 104 HIS 104 335 335 HIS HIS A . n A 1 105 ILE 105 336 336 ILE ILE A . n A 1 106 LEU 106 337 337 LEU LEU A . n A 1 107 LYS 107 338 338 LYS LYS A . n A 1 108 GLU 108 339 339 GLU GLU A . n A 1 109 MET 109 340 340 MET MET A . n A 1 110 TYR 110 341 341 TYR TYR A . n A 1 111 ASP 111 342 342 ASP ASP A . n A 1 112 ALA 112 343 343 ALA ALA A . n A 1 113 ASP 113 344 344 ASP ASP A . n A 1 114 LEU 114 345 345 LEU LEU A . n A 1 115 LEU 115 346 346 LEU LEU A . n A 1 116 GLU 116 347 347 GLU GLU A . n A 1 117 GLU 117 348 348 GLU GLU A . n A 1 118 GLU 118 349 349 GLU GLU A . n A 1 119 VAL 119 350 350 VAL VAL A . n A 1 120 ILE 120 351 351 ILE ILE A . n A 1 121 ILE 121 352 352 ILE ILE A . n A 1 122 SER 122 353 353 SER SER A . n A 1 123 TRP 123 354 354 TRP TRP A . n A 1 124 SER 124 355 355 SER SER A . n A 1 125 GLU 125 356 356 GLU GLU A . n A 1 126 LYS 126 357 357 LYS LYS A . n A 1 127 ALA 127 358 358 ALA ALA A . n A 1 128 SER 128 359 359 SER SER A . n A 1 129 LYS 129 360 360 LYS LYS A . n A 1 130 LYS 130 361 361 LYS LYS A . n A 1 131 TYR 131 362 362 TYR TYR A . n A 1 132 VAL 132 363 363 VAL VAL A . n A 1 133 SER 133 364 364 SER SER A . n A 1 134 LYS 134 365 365 LYS LYS A . n A 1 135 GLU 135 366 366 GLU GLU A . n A 1 136 LEU 136 367 367 LEU LEU A . n A 1 137 ALA 137 368 368 ALA ALA A . n A 1 138 LYS 138 369 369 LYS LYS A . n A 1 139 GLU 139 370 370 GLU GLU A . n A 1 140 ILE 140 371 371 ILE ILE A . n A 1 141 ARG 141 372 372 ARG ARG A . n A 1 142 VAL 142 373 373 VAL VAL A . n A 1 143 LYS 143 374 374 LYS LYS A . n A 1 144 ALA 144 375 375 ALA ALA A . n A 1 145 GLU 145 376 376 GLU GLU A . n A 1 146 PRO 146 377 377 PRO PRO A . n A 1 147 PHE 147 378 378 PHE PHE A . n A 1 148 ILE 148 379 379 ILE ILE A . n A 1 149 LYS 149 380 380 LYS LYS A . n A 1 150 TRP 150 381 381 TRP TRP A . n A 1 151 LEU 151 382 382 LEU LEU A . n A 1 152 LYS 152 383 383 LYS LYS A . n A 1 153 GLU 153 384 384 GLU GLU A . n A 1 154 ALA 154 385 385 ALA ALA A . n A 1 155 GLU 155 386 386 GLU GLU A . n A 1 156 GLU 156 387 387 GLU GLU A . n A 1 157 GLU 157 388 388 GLU GLU A . n A 1 158 SER 158 389 389 SER SER A . n A 1 159 SER 159 390 390 SER SER A . n A 1 160 GLY 160 391 391 GLY GLY A . n A 1 161 GLY 161 392 392 GLY GLY A . n A 1 162 GLU 162 393 393 GLU GLU A . n A 1 163 GLU 163 394 394 GLU GLU A . n A 1 164 GLU 164 395 395 GLU GLU A . n A 1 165 ASP 165 396 396 ASP ASP A . n A 1 166 GLU 166 397 397 GLU GLU A . n A 1 167 ASP 167 398 398 ASP ASP A . n A 1 168 GLU 168 399 399 GLU GLU A . n A 1 169 ASN 169 400 400 ASN ASN A . n A 1 170 ILE 170 401 401 ILE ILE A . n A 1 171 GLU 171 402 402 GLU GLU A . n A 1 172 VAL 172 403 403 VAL VAL A . n A 1 173 VAL 173 404 404 VAL VAL A . n A 1 174 TYR 174 405 405 TYR TYR A . n A 1 175 SER 175 406 406 SER SER A . n A 1 176 LYS 176 407 407 LYS LYS A . n A 1 177 LEU 177 408 408 LEU LEU A . n A 1 178 GLU 178 409 409 GLU GLU A . n A 1 179 SER 179 410 410 SER SER A . n A 1 180 VAL 180 411 ? ? ? A . n A 1 181 PRO 181 412 ? ? ? A . n A 1 182 LYS 182 413 ? ? ? A . n A 1 183 VAL 183 414 ? ? ? A . n A 1 184 GLU 184 415 ? ? ? A . n A 1 185 THR 185 416 ? ? ? A . n A 1 186 VAL 186 417 ? ? ? A . n A 1 187 LYS 187 418 ? ? ? A . n A 1 188 SER 188 419 ? ? ? A . n A 1 189 ASP 189 420 ? ? ? A . n A 1 190 ASN 190 421 ? ? ? A . n A 1 191 LYS 191 422 ? ? ? A . n A 1 192 ASP 192 423 ? ? ? A . n A 1 193 ASP 193 424 ? ? ? A . n A 1 194 ASP 194 425 ? ? ? A . n A 1 195 ILE 195 426 ? ? ? A . n A 1 196 ASP 196 427 ? ? ? A . n A 1 197 ILE 197 428 ? ? ? A . n A 1 198 ASP 198 429 ? ? ? A . n A 1 199 ALA 199 430 ? ? ? A . n A 1 200 ILE 200 431 ? ? ? A . n A 1 201 LEU 201 432 ? ? ? A . n A 1 202 GLU 202 433 ? ? ? A . n A 1 203 HIS 203 434 ? ? ? A . n A 1 204 HIS 204 435 ? ? ? A . n A 1 205 HIS 205 436 ? ? ? A . n A 1 206 HIS 206 437 ? ? ? A . n A 1 207 HIS 207 438 ? ? ? A . n A 1 208 HIS 208 439 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 2001 2001 HOH HOH A . B 2 HOH 2 2002 2002 HOH HOH A . B 2 HOH 3 2003 2003 HOH HOH A . B 2 HOH 4 2004 2004 HOH HOH A . B 2 HOH 5 2005 2005 HOH HOH A . B 2 HOH 6 2006 2006 HOH HOH A . B 2 HOH 7 2007 2007 HOH HOH A . B 2 HOH 8 2008 2008 HOH HOH A . B 2 HOH 9 2009 2009 HOH HOH A . B 2 HOH 10 2010 2010 HOH HOH A . B 2 HOH 11 2011 2011 HOH HOH A . B 2 HOH 12 2012 2012 HOH HOH A . B 2 HOH 13 2013 2013 HOH HOH A . B 2 HOH 14 2014 2014 HOH HOH A . B 2 HOH 15 2015 2015 HOH HOH A . B 2 HOH 16 2016 2016 HOH HOH A . B 2 HOH 17 2017 2017 HOH HOH A . B 2 HOH 18 2018 2018 HOH HOH A . B 2 HOH 19 2019 2019 HOH HOH A . B 2 HOH 20 2020 2020 HOH HOH A . B 2 HOH 21 2021 2021 HOH HOH A . B 2 HOH 22 2022 2022 HOH HOH A . B 2 HOH 23 2023 2023 HOH HOH A . B 2 HOH 24 2024 2024 HOH HOH A . B 2 HOH 25 2025 2025 HOH HOH A . B 2 HOH 26 2026 2026 HOH HOH A . B 2 HOH 27 2027 2027 HOH HOH A . B 2 HOH 28 2028 2028 HOH HOH A . B 2 HOH 29 2029 2029 HOH HOH A . B 2 HOH 30 2030 2030 HOH HOH A . B 2 HOH 31 2031 2031 HOH HOH A . B 2 HOH 32 2032 2032 HOH HOH A . B 2 HOH 33 2033 2033 HOH HOH A . B 2 HOH 34 2034 2034 HOH HOH A . B 2 HOH 35 2035 2035 HOH HOH A . B 2 HOH 36 2036 2036 HOH HOH A . B 2 HOH 37 2037 2037 HOH HOH A . B 2 HOH 38 2038 2038 HOH HOH A . B 2 HOH 39 2039 2039 HOH HOH A . B 2 HOH 40 2040 2040 HOH HOH A . B 2 HOH 41 2041 2041 HOH HOH A . B 2 HOH 42 2042 2042 HOH HOH A . B 2 HOH 43 2043 2043 HOH HOH A . B 2 HOH 44 2044 2044 HOH HOH A . B 2 HOH 45 2045 2045 HOH HOH A . B 2 HOH 46 2046 2046 HOH HOH A . B 2 HOH 47 2047 2047 HOH HOH A . B 2 HOH 48 2048 2048 HOH HOH A . B 2 HOH 49 2049 2049 HOH HOH A . B 2 HOH 50 2050 2050 HOH HOH A . B 2 HOH 51 2051 2051 HOH HOH A . B 2 HOH 52 2052 2052 HOH HOH A . B 2 HOH 53 2053 2053 HOH HOH A . B 2 HOH 54 2054 2054 HOH HOH A . B 2 HOH 55 2055 2055 HOH HOH A . B 2 HOH 56 2056 2056 HOH HOH A . B 2 HOH 57 2057 2057 HOH HOH A . B 2 HOH 58 2058 2058 HOH HOH A . B 2 HOH 59 2059 2059 HOH HOH A . B 2 HOH 60 2060 2060 HOH HOH A . B 2 HOH 61 2061 2061 HOH HOH A . B 2 HOH 62 2062 2062 HOH HOH A . B 2 HOH 63 2063 2063 HOH HOH A . B 2 HOH 64 2064 2064 HOH HOH A . B 2 HOH 65 2065 2065 HOH HOH A . B 2 HOH 66 2066 2066 HOH HOH A . B 2 HOH 67 2067 2067 HOH HOH A . B 2 HOH 68 2068 2068 HOH HOH A . B 2 HOH 69 2069 2069 HOH HOH A . B 2 HOH 70 2070 2070 HOH HOH A . B 2 HOH 71 2071 2071 HOH HOH A . B 2 HOH 72 2072 2072 HOH HOH A . B 2 HOH 73 2073 2073 HOH HOH A . B 2 HOH 74 2074 2074 HOH HOH A . B 2 HOH 75 2075 2075 HOH HOH A . B 2 HOH 76 2076 2076 HOH HOH A . B 2 HOH 77 2077 2077 HOH HOH A . B 2 HOH 78 2078 2078 HOH HOH A . B 2 HOH 79 2079 2079 HOH HOH A . B 2 HOH 80 2080 2080 HOH HOH A . B 2 HOH 81 2081 2081 HOH HOH A . B 2 HOH 82 2082 2082 HOH HOH A . B 2 HOH 83 2083 2083 HOH HOH A . B 2 HOH 84 2084 2084 HOH HOH A . B 2 HOH 85 2085 2085 HOH HOH A . B 2 HOH 86 2086 2086 HOH HOH A . B 2 HOH 87 2087 2087 HOH HOH A . B 2 HOH 88 2088 2088 HOH HOH A . B 2 HOH 89 2089 2089 HOH HOH A . B 2 HOH 90 2090 2090 HOH HOH A . B 2 HOH 91 2091 2091 HOH HOH A . B 2 HOH 92 2092 2092 HOH HOH A . B 2 HOH 93 2093 2093 HOH HOH A . B 2 HOH 94 2094 2094 HOH HOH A . B 2 HOH 95 2095 2095 HOH HOH A . B 2 HOH 96 2096 2096 HOH HOH A . B 2 HOH 97 2097 2097 HOH HOH A . B 2 HOH 98 2098 2098 HOH HOH A . B 2 HOH 99 2099 2099 HOH HOH A . B 2 HOH 100 2100 2100 HOH HOH A . B 2 HOH 101 2101 2101 HOH HOH A . B 2 HOH 102 2102 2102 HOH HOH A . B 2 HOH 103 2103 2103 HOH HOH A . B 2 HOH 104 2104 2104 HOH HOH A . B 2 HOH 105 2105 2105 HOH HOH A . B 2 HOH 106 2106 2106 HOH HOH A . B 2 HOH 107 2107 2107 HOH HOH A . B 2 HOH 108 2108 2108 HOH HOH A . B 2 HOH 109 2109 2109 HOH HOH A . B 2 HOH 110 2110 2110 HOH HOH A . B 2 HOH 111 2111 2111 HOH HOH A . B 2 HOH 112 2112 2112 HOH HOH A . B 2 HOH 113 2113 2113 HOH HOH A . B 2 HOH 114 2114 2114 HOH HOH A . B 2 HOH 115 2115 2115 HOH HOH A . B 2 HOH 116 2116 2116 HOH HOH A . B 2 HOH 117 2117 2117 HOH HOH A . B 2 HOH 118 2118 2118 HOH HOH A . B 2 HOH 119 2119 2119 HOH HOH A . B 2 HOH 120 2120 2120 HOH HOH A . B 2 HOH 121 2121 2121 HOH HOH A . B 2 HOH 122 2122 2122 HOH HOH A . B 2 HOH 123 2123 2123 HOH HOH A . B 2 HOH 124 2124 2124 HOH HOH A . B 2 HOH 125 2125 2125 HOH HOH A . B 2 HOH 126 2126 2126 HOH HOH A . B 2 HOH 127 2127 2127 HOH HOH A . B 2 HOH 128 2128 2128 HOH HOH A . B 2 HOH 129 2129 2129 HOH HOH A . B 2 HOH 130 2130 2130 HOH HOH A . B 2 HOH 131 2131 2131 HOH HOH A . B 2 HOH 132 2132 2132 HOH HOH A . B 2 HOH 133 2133 2133 HOH HOH A . B 2 HOH 134 2134 2134 HOH HOH A . B 2 HOH 135 2135 2135 HOH HOH A . B 2 HOH 136 2136 2136 HOH HOH A . B 2 HOH 137 2137 2137 HOH HOH A . B 2 HOH 138 2138 2138 HOH HOH A . B 2 HOH 139 2139 2139 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-01 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Experimental preparation' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 4 'Structure model' pdbx_database_proc 3 4 'Structure model' pdbx_database_status 4 4 'Structure model' pdbx_unobs_or_zero_occ_residues 5 4 'Structure model' struct_biol # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.temp' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 11.1575 54.5868 5.8464 -0.0891 -0.1316 -0.1693 -0.0408 -0.0177 0.0267 9.9974 4.5945 4.1315 -4.9181 -3.7164 3.1514 0.1450 0.3703 -0.1056 -0.3325 -0.1918 0.1007 -0.0654 -0.2250 0.0468 'X-RAY DIFFRACTION' 2 ? refined 16.1308 47.3855 20.0601 -0.1418 -0.1312 -0.1361 0.0062 0.0032 -0.0153 1.3088 2.7709 1.5648 0.3527 0.0036 -1.5339 -0.0370 -0.0974 -0.1045 0.0026 0.0146 0.0552 0.0796 -0.0099 0.0224 'X-RAY DIFFRACTION' 3 ? refined 7.0683 45.4758 27.0214 -0.0651 -0.0960 -0.0720 -0.0268 0.0294 -0.0407 4.0718 2.4485 2.4443 -2.1158 1.8571 -2.2434 -0.1148 -0.1661 0.0308 0.2149 0.0784 -0.0011 -0.0945 -0.0571 0.0365 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 232 ? ? A 259 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 260 ? ? A 360 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 361 ? ? A 409 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.2.0019 ? 1 ? ? ? ? XDS 'data reduction' . ? 2 ? ? ? ? XSCALE 'data scaling' . ? 3 ? ? ? ? SHARP phasing . ? 4 ? ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE2 A GLU 387 ? ? O A HOH 2125 ? ? 0.51 2 1 CD A GLU 387 ? ? O A HOH 2125 ? ? 1.32 3 1 CA A ASP 396 ? ? O A HOH 2126 ? ? 1.52 4 1 N A GLU 397 ? ? O A HOH 2126 ? ? 1.64 5 1 OD2 A ASP 398 ? ? O A HOH 2129 ? ? 1.74 6 1 CB A ASP 398 ? ? O A HOH 2128 ? ? 1.75 7 1 C A ASP 396 ? ? O A HOH 2126 ? ? 1.78 8 1 O A HOH 2007 ? ? O A HOH 2039 ? ? 1.98 9 1 OE1 A GLU 387 ? ? O A HOH 2125 ? ? 2.00 10 1 N A ASP 398 ? ? O A HOH 2128 ? ? 2.04 11 1 OD1 A ASP 398 ? ? O A HOH 2128 ? ? 2.10 12 1 OE1 A GLU 282 ? ? NZ A LYS 407 ? ? 2.12 13 1 N A ASP 396 ? ? O A HOH 2126 ? ? 2.18 14 1 OE1 A GLU 397 ? ? O A HOH 2126 ? ? 2.18 15 1 O A HOH 2136 ? ? O A HOH 2138 ? ? 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 O A GLU 384 ? ? C A GLU 384 ? ? N A ALA 385 ? ? 110.78 122.70 -11.92 1.60 Y 2 1 O A ASP 398 ? ? C A ASP 398 ? ? N A GLU 399 ? ? 111.23 122.70 -11.47 1.60 Y 3 1 C A ASP 398 ? ? N A GLU 399 ? ? CA A GLU 399 ? ? 105.31 121.70 -16.39 2.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 286 ? ? -139.72 -142.01 2 1 LYS A 361 ? ? 82.86 8.02 3 1 GLU A 384 ? ? 108.28 -112.86 4 1 GLU A 386 ? ? 170.52 156.81 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id GLU _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 384 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle 10.66 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 410 ? CA ? A SER 179 CA 2 1 Y 1 A SER 410 ? C ? A SER 179 C 3 1 Y 1 A SER 410 ? O ? A SER 179 O 4 1 Y 1 A SER 410 ? CB ? A SER 179 CB 5 1 Y 1 A SER 410 ? OG ? A SER 179 OG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 411 ? A VAL 180 2 1 Y 1 A PRO 412 ? A PRO 181 3 1 Y 1 A LYS 413 ? A LYS 182 4 1 Y 1 A VAL 414 ? A VAL 183 5 1 Y 1 A GLU 415 ? A GLU 184 6 1 Y 1 A THR 416 ? A THR 185 7 1 Y 1 A VAL 417 ? A VAL 186 8 1 Y 1 A LYS 418 ? A LYS 187 9 1 Y 1 A SER 419 ? A SER 188 10 1 Y 1 A ASP 420 ? A ASP 189 11 1 Y 1 A ASN 421 ? A ASN 190 12 1 Y 1 A LYS 422 ? A LYS 191 13 1 Y 1 A ASP 423 ? A ASP 192 14 1 Y 1 A ASP 424 ? A ASP 193 15 1 Y 1 A ASP 425 ? A ASP 194 16 1 Y 1 A ILE 426 ? A ILE 195 17 1 Y 1 A ASP 427 ? A ASP 196 18 1 Y 1 A ILE 428 ? A ILE 197 19 1 Y 1 A ASP 429 ? A ASP 198 20 1 Y 1 A ALA 430 ? A ALA 199 21 1 Y 1 A ILE 431 ? A ILE 200 22 1 Y 1 A LEU 432 ? A LEU 201 23 1 Y 1 A GLU 433 ? A GLU 202 24 1 Y 1 A HIS 434 ? A HIS 203 25 1 Y 1 A HIS 435 ? A HIS 204 26 1 Y 1 A HIS 436 ? A HIS 205 27 1 Y 1 A HIS 437 ? A HIS 206 28 1 Y 1 A HIS 438 ? A HIS 207 29 1 Y 1 A HIS 439 ? A HIS 208 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #