HEADER ISOMERASE 09-JUL-06 2IXN TITLE CRYSTAL STRUCTURE OF THE PP2A PHOSPHATASE ACTIVATOR YPA2 TITLE 2 PTPA2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN PHOSPHATASE 2A ACTIVATOR 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-304; COMPND 5 SYNONYM: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PTPA-2, PPIASE PTPA-2, COMPND 6 ROTAMASE PTPA-2, PTPA2, PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR 2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: GOLD (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET9 KEYWDS PP2A PHOSPHATASE ACTIVATOR PROLYL ISOMERASE PTPA, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.LEULLIOT,G.VICENTINI,J.JORDENS,S.QUEVILLON-CHERUEL,M.SCHILTZ, AUTHOR 2 D.BARFORD,H.VAN TILBEURGH,J.GORIS REVDAT 4 13-JUL-11 2IXN 1 VERSN REVDAT 3 24-FEB-09 2IXN 1 VERSN REVDAT 2 09-AUG-06 2IXN 1 JRNL REVDAT 1 31-JUL-06 2IXN 0 JRNL AUTH N.LEULLIOT,G.VICENTINI,J.JORDENS,S.QUEVILLON-CHERUEL, JRNL AUTH 2 M.SCHILTZ,D.BARFORD,H.VAN TILBEURGH,J.GORIS JRNL TITL CRYSTAL STRUCTURE OF THE PP2A PHOSPHATASE ACTIVATOR: JRNL TITL 2 IMPLICATIONS FOR ITS PP2A-SPECIFIC PPIASE ACTIVITY JRNL REF MOL.CELL V. 23 413 2006 JRNL REFN ISSN 1097-2765 JRNL PMID 16885030 JRNL DOI 10.1016/J.MOLCEL.2006.07.008 REMARK 2 REMARK 2 RESOLUTION. 2.8 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 16283 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 897 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1201 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4792 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.38000 REMARK 3 B22 (A**2) : 2.13000 REMARK 3 B33 (A**2) : -0.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.432 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.323 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 36.688 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4920 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6628 ; 2.226 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 572 ; 8.678 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 234 ;37.582 ;23.675 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 902 ;24.950 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;22.792 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 702 ; 0.160 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3674 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2453 ; 0.280 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3362 ; 0.337 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 203 ; 0.185 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.274 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.326 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2939 ; 0.751 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4660 ; 1.369 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2264 ; 2.129 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1968 ; 3.338 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 299 REMARK 3 ORIGIN FOR THE GROUP (A): 56.9640 28.2260 1.0910 REMARK 3 T TENSOR REMARK 3 T11: 0.0885 T22: 0.4011 REMARK 3 T33: 0.0698 T12: -0.0627 REMARK 3 T13: -0.0650 T23: 0.0778 REMARK 3 L TENSOR REMARK 3 L11: 5.4437 L22: 1.8848 REMARK 3 L33: 2.0819 L12: 1.7840 REMARK 3 L13: -0.2208 L23: -0.4497 REMARK 3 S TENSOR REMARK 3 S11: 0.1960 S12: -0.6641 S13: -0.0837 REMARK 3 S21: 0.0696 S22: -0.0068 S23: 0.1278 REMARK 3 S31: 0.0920 S32: -0.1800 S33: -0.1891 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 299 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5510 16.7040 -22.2240 REMARK 3 T TENSOR REMARK 3 T11: 0.0034 T22: 0.3554 REMARK 3 T33: 0.0212 T12: -0.0437 REMARK 3 T13: 0.0145 T23: 0.0629 REMARK 3 L TENSOR REMARK 3 L11: 2.2523 L22: 2.4630 REMARK 3 L33: 5.0630 L12: 0.7868 REMARK 3 L13: 0.7246 L23: -0.9988 REMARK 3 S TENSOR REMARK 3 S11: -0.1708 S12: 0.2932 S13: -0.0674 REMARK 3 S21: -0.0491 S22: -0.1792 S23: 0.0224 REMARK 3 S31: -0.3281 S32: 0.2722 S33: 0.3500 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2IXN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUL-06. REMARK 100 THE PDBE ID CODE IS EBI-29332. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 176445 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.19000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX, HYSS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA):2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG4000, 0.4M KCL, PH 5.6, REMARK 280 0.1M TRIS-HCL PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.86750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 26.86750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 78.96500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 85.52100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 78.96500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 85.52100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.86750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 78.96500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 85.52100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 26.86750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 78.96500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 85.52100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 ASP A 74 REMARK 465 ALA A 75 REMARK 465 ASP A 76 REMARK 465 SER A 77 REMARK 465 SER A 78 REMARK 465 PRO A 300 REMARK 465 ASP A 301 REMARK 465 GLY A 302 REMARK 465 VAL A 303 REMARK 465 SER A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 ASP B 74 REMARK 465 ALA B 75 REMARK 465 ASP B 76 REMARK 465 SER B 77 REMARK 465 HIS B 188 REMARK 465 GLY B 189 REMARK 465 VAL B 190 REMARK 465 TRP B 191 REMARK 465 SER B 246 REMARK 465 SER B 247 REMARK 465 ALA B 248 REMARK 465 PRO B 300 REMARK 465 ASP B 301 REMARK 465 GLY B 302 REMARK 465 VAL B 303 REMARK 465 SER B 304 REMARK 465 HIS B 305 REMARK 465 HIS B 306 REMARK 465 HIS B 307 REMARK 465 HIS B 308 REMARK 465 HIS B 309 REMARK 465 HIS B 310 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 3 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TRP A 16 OG SER A 19 2.13 REMARK 500 O THR B 66 N LYS B 68 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 223 CG GLU A 223 CD 0.105 REMARK 500 THR B 9 N THR B 9 CA 0.138 REMARK 500 GLU B 121 CB GLU B 121 CG -0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 7 CA - CB - CG ANGL. DEV. = 16.7 DEGREES REMARK 500 ARG A 101 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 101 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 LEU A 154 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 LEU A 161 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 CYS A 299 CA - CB - SG ANGL. DEV. = -7.1 DEGREES REMARK 500 PRO B 10 C - N - CA ANGL. DEV. = 23.4 DEGREES REMARK 500 PRO B 10 C - N - CD ANGL. DEV. = -20.4 DEGREES REMARK 500 LEU B 193 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 7 31.78 -148.39 REMARK 500 THR A 9 -142.96 -155.63 REMARK 500 ASP A 11 15.05 -140.89 REMARK 500 THR A 21 -72.05 -60.07 REMARK 500 ARG A 22 -66.63 -21.02 REMARK 500 GLU A 46 -134.29 -56.19 REMARK 500 PRO A 47 103.63 -31.77 REMARK 500 SER A 158 -72.12 7.10 REMARK 500 SER A 187 30.51 -88.18 REMARK 500 PHE A 198 -64.40 -122.75 REMARK 500 LEU A 202 -74.89 -40.82 REMARK 500 HIS A 213 -43.38 -138.33 REMARK 500 ILE A 217 -19.56 -43.56 REMARK 500 LYS A 243 -71.10 -58.76 REMARK 500 VAL A 244 -62.29 -27.83 REMARK 500 LYS A 245 45.19 -97.12 REMARK 500 SER A 246 127.85 -39.01 REMARK 500 SER A 247 3.58 44.69 REMARK 500 SER A 254 92.67 -161.36 REMARK 500 SER A 283 33.80 -141.60 REMARK 500 LEU A 285 -70.37 -34.79 REMARK 500 LEU A 297 76.23 -117.33 REMARK 500 ASN B 41 -32.22 -28.14 REMARK 500 GLN B 43 54.39 -150.30 REMARK 500 ASN B 57 47.79 -99.40 REMARK 500 THR B 66 -72.42 -51.43 REMARK 500 GLN B 67 28.41 -57.41 REMARK 500 LYS B 68 18.90 -140.61 REMARK 500 GLU B 84 -31.51 -36.51 REMARK 500 SER B 96 -49.17 -28.16 REMARK 500 LYS B 164 -73.97 -83.57 REMARK 500 TRP B 181 46.96 71.38 REMARK 500 PHE B 198 -69.32 -127.79 REMARK 500 GLN B 207 -39.73 -35.90 REMARK 500 HIS B 213 -42.28 -133.49 REMARK 500 SER B 254 76.92 -116.37 REMARK 500 VAL B 281 -62.90 -106.98 REMARK 500 PRO B 286 -32.43 -25.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 4 LYS A 5 -138.36 REMARK 500 THR A 9 PRO A 10 -139.80 REMARK 500 ASP A 11 ASP A 12 148.16 REMARK 500 GLY B 38 HIS B 39 -147.32 REMARK 500 PRO B 298 CYS B 299 149.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU A 4 23.9 L L OUTSIDE RANGE REMARK 500 LEU A 8 23.7 L L OUTSIDE RANGE REMARK 500 THR A 9 21.5 L L OUTSIDE RANGE REMARK 500 GLU A 46 12.4 L L OUTSIDE RANGE REMARK 500 ASN A 57 23.7 L L OUTSIDE RANGE REMARK 500 SER A 247 24.1 L L OUTSIDE RANGE REMARK 500 LEU B 7 24.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IXO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PP2A PHOSPHATASE REMARK 900 ACTIVATOR YPA1 PTPA1 REMARK 900 RELATED ID: 2IXP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PP2A PHOSPHATASE REMARK 900 ACTIVATOR YPA1 PTPA1 IN COMPLEX WITH MODEL REMARK 900 SUBSTRATE DBREF 2IXN A 1 304 UNP Q12461 PTPA2_YEAST 1 304 DBREF 2IXN A 305 310 PDB 2IXN 2IXN 305 310 DBREF 2IXN B 1 304 UNP Q12461 PTPA2_YEAST 1 304 DBREF 2IXN B 305 310 PDB 2IXN 2IXN 305 310 SEQRES 1 A 310 MET LEU PRO GLU LYS ARG LEU LEU THR PRO ASP ASP MET SEQRES 2 A 310 LYS LEU TRP GLU GLU SER PRO THR ARG ALA HIS PHE THR SEQRES 3 A 310 LYS PHE ILE ILE ASP LEU ALA GLU SER VAL LYS GLY HIS SEQRES 4 A 310 GLU ASN SER GLN TYR LYS GLU PRO ILE SER GLU SER ILE SEQRES 5 A 310 ASN SER MET MET ASN LEU LEU SER GLN ILE LYS ASP ILE SEQRES 6 A 310 THR GLN LYS HIS PRO VAL ILE LYS ASP ALA ASP SER SER SEQRES 7 A 310 ARG PHE GLY LYS VAL GLU PHE ARG ASP PHE TYR ASP GLU SEQRES 8 A 310 VAL SER ARG ASN SER ARG LYS ILE LEU ARG SER GLU PHE SEQRES 9 A 310 PRO SER LEU THR ASP GLU GLN LEU GLU GLN LEU SER ILE SEQRES 10 A 310 TYR LEU ASP GLU SER TRP GLY ASN LYS ARG ARG ILE ASP SEQRES 11 A 310 TYR GLY SER GLY HIS GLU LEU ASN PHE MET CYS LEU LEU SEQRES 12 A 310 TYR GLY LEU TYR SER TYR GLY ILE PHE ASN LEU SER ASN SEQRES 13 A 310 ASP SER THR ASN LEU VAL LEU LYS VAL PHE ILE GLU TYR SEQRES 14 A 310 LEU LYS ILE MET ARG ILE LEU GLU THR LYS TYR TRP LEU SEQRES 15 A 310 GLU PRO ALA GLY SER HIS GLY VAL TRP GLY LEU ASP ASP SEQRES 16 A 310 TYR HIS PHE LEU PRO PHE LEU PHE GLY ALA PHE GLN LEU SEQRES 17 A 310 THR THR HIS LYS HIS LEU LYS PRO ILE SER ILE HIS ASN SEQRES 18 A 310 ASN GLU LEU VAL GLU MET PHE ALA HIS ARG TYR LEU TYR SEQRES 19 A 310 PHE GLY CYS ILE ALA PHE ILE ASN LYS VAL LYS SER SER SEQRES 20 A 310 ALA SER LEU ARG TRP HIS SER PRO MET LEU ASP ASP ILE SEQRES 21 A 310 SER GLY VAL LYS THR TRP SER LYS VAL ALA GLU GLY MET SEQRES 22 A 310 ILE LYS MET TYR LYS ALA GLU VAL LEU SER LYS LEU PRO SEQRES 23 A 310 ILE MET GLN HIS PHE TYR PHE SER GLU PHE LEU PRO CYS SEQRES 24 A 310 PRO ASP GLY VAL SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 310 MET LEU PRO GLU LYS ARG LEU LEU THR PRO ASP ASP MET SEQRES 2 B 310 LYS LEU TRP GLU GLU SER PRO THR ARG ALA HIS PHE THR SEQRES 3 B 310 LYS PHE ILE ILE ASP LEU ALA GLU SER VAL LYS GLY HIS SEQRES 4 B 310 GLU ASN SER GLN TYR LYS GLU PRO ILE SER GLU SER ILE SEQRES 5 B 310 ASN SER MET MET ASN LEU LEU SER GLN ILE LYS ASP ILE SEQRES 6 B 310 THR GLN LYS HIS PRO VAL ILE LYS ASP ALA ASP SER SER SEQRES 7 B 310 ARG PHE GLY LYS VAL GLU PHE ARG ASP PHE TYR ASP GLU SEQRES 8 B 310 VAL SER ARG ASN SER ARG LYS ILE LEU ARG SER GLU PHE SEQRES 9 B 310 PRO SER LEU THR ASP GLU GLN LEU GLU GLN LEU SER ILE SEQRES 10 B 310 TYR LEU ASP GLU SER TRP GLY ASN LYS ARG ARG ILE ASP SEQRES 11 B 310 TYR GLY SER GLY HIS GLU LEU ASN PHE MET CYS LEU LEU SEQRES 12 B 310 TYR GLY LEU TYR SER TYR GLY ILE PHE ASN LEU SER ASN SEQRES 13 B 310 ASP SER THR ASN LEU VAL LEU LYS VAL PHE ILE GLU TYR SEQRES 14 B 310 LEU LYS ILE MET ARG ILE LEU GLU THR LYS TYR TRP LEU SEQRES 15 B 310 GLU PRO ALA GLY SER HIS GLY VAL TRP GLY LEU ASP ASP SEQRES 16 B 310 TYR HIS PHE LEU PRO PHE LEU PHE GLY ALA PHE GLN LEU SEQRES 17 B 310 THR THR HIS LYS HIS LEU LYS PRO ILE SER ILE HIS ASN SEQRES 18 B 310 ASN GLU LEU VAL GLU MET PHE ALA HIS ARG TYR LEU TYR SEQRES 19 B 310 PHE GLY CYS ILE ALA PHE ILE ASN LYS VAL LYS SER SER SEQRES 20 B 310 ALA SER LEU ARG TRP HIS SER PRO MET LEU ASP ASP ILE SEQRES 21 B 310 SER GLY VAL LYS THR TRP SER LYS VAL ALA GLU GLY MET SEQRES 22 B 310 ILE LYS MET TYR LYS ALA GLU VAL LEU SER LYS LEU PRO SEQRES 23 B 310 ILE MET GLN HIS PHE TYR PHE SER GLU PHE LEU PRO CYS SEQRES 24 B 310 PRO ASP GLY VAL SER HIS HIS HIS HIS HIS HIS HELIX 1 1 MET A 13 GLU A 18 1 6 HELIX 2 2 SER A 19 SER A 35 1 17 HELIX 3 3 SER A 49 GLN A 67 1 19 HELIX 4 4 VAL A 83 PHE A 104 1 22 HELIX 5 5 THR A 108 GLU A 121 1 14 HELIX 6 6 GLY A 132 TYR A 149 1 18 HELIX 7 7 ASN A 153 TRP A 181 1 29 HELIX 8 8 PHE A 198 LEU A 208 1 11 HELIX 9 9 LYS A 215 HIS A 220 5 6 HELIX 10 10 ASN A 221 ALA A 229 1 9 HELIX 11 11 TYR A 232 LYS A 245 1 14 HELIX 12 12 SER A 249 SER A 254 1 6 HELIX 13 13 SER A 254 SER A 261 1 8 HELIX 14 14 THR A 265 VAL A 281 1 17 HELIX 15 15 LYS A 284 GLN A 289 1 6 HELIX 16 16 ASP B 11 GLU B 18 1 8 HELIX 17 17 SER B 19 VAL B 36 1 18 HELIX 18 18 SER B 49 GLN B 67 1 19 HELIX 19 19 VAL B 83 PHE B 104 1 22 HELIX 20 20 THR B 108 GLU B 121 1 14 HELIX 21 21 GLY B 132 TYR B 149 1 18 HELIX 22 22 ASN B 153 TYR B 180 1 28 HELIX 23 23 PHE B 198 GLN B 207 1 10 HELIX 24 24 LYS B 215 ASN B 221 5 7 HELIX 25 25 GLU B 223 ALA B 229 1 7 HELIX 26 26 TYR B 232 LYS B 245 1 14 HELIX 27 27 SER B 249 SER B 254 1 6 HELIX 28 28 SER B 254 ILE B 260 1 7 HELIX 29 29 THR B 265 VAL B 281 1 17 HELIX 30 30 LYS B 284 GLN B 289 1 6 SHEET 1 AA 2 ASP A 130 TYR A 131 0 SHEET 2 AA 2 GLU A 183 PRO A 184 1 O GLU A 183 N TYR A 131 SHEET 1 BA 2 ASP B 130 TYR B 131 0 SHEET 2 BA 2 GLU B 183 PRO B 184 1 O GLU B 183 N TYR B 131 CISPEP 1 THR B 9 PRO B 10 0 -27.09 CRYST1 157.930 171.042 53.735 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006332 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005847 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018610 0.00000