HEADER TRANSFERASE 13-JUL-06 2IYA TITLE THE CRYSTAL STRUCTURE OF MACROLIDE GLYCOSYLTRANSFERASES: A BLUEPRINT TITLE 2 FOR ANTIBIOTIC ENGINEERING COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLEANDOMYCIN GLYCOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OLEI; COMPND 5 EC: 2.4.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES ANTIBIOTICUS; SOURCE 3 ORGANISM_TAXID: 1890; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET32B; SOURCE 8 OTHER_DETAILS: DSMZ NO.40868 KEYWDS CARBOHYDRATE, GLYCOSYLATION, GLYCOSYLTRANSFERASE, ENZYME, MACROLIDE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.N.BOLAM,S.M.ROBERTS,M.R.PROCTOR,J.P.TURKENBURG,E.J.DODSON, AUTHOR 2 C.MARTINEZ-FLEITES,M.YANG,B.G.DAVIS,G.J.DAVIES,H.J.GILBERT REVDAT 5 24-JAN-18 2IYA 1 SOURCE REVDAT 4 24-FEB-09 2IYA 1 VERSN REVDAT 3 29-JAN-08 2IYA 1 JRNL REVDAT 2 10-APR-07 2IYA 1 JRNL REMARK REVDAT 1 27-MAR-07 2IYA 0 JRNL AUTH D.N.BOLAM,S.M.ROBERTS,M.R.PROCTOR,J.P.TURKENBURG,E.J.DODSON, JRNL AUTH 2 C.MARTINEZ-FLEITES,M.YANG,B.G.DAVIS,G.J.DAVIES,H.J.GILBERT JRNL TITL THE CRYSTAL STRUCTURE OF TWO MACROLIDE GLYCOSYLTRANSFERASES JRNL TITL 2 PROVIDES A BLUEPRINT FOR HOST CELL ANTIBIOTIC IMMUNITY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 5336 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17376874 JRNL DOI 10.1073/PNAS.0607897104 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 77514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4084 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4289 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 242 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5860 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 146 REMARK 3 SOLVENT ATOMS : 642 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : -0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.845 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6215 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8537 ; 1.340 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 789 ; 5.216 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 260 ;34.110 ;23.577 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 883 ;12.096 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;17.660 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1000 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4728 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2911 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4331 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 549 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 80 ; 0.190 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 36 ; 0.206 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3996 ; 0.851 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6287 ; 1.340 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2496 ; 2.174 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2235 ; 3.418 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2IYA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1290029369. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81807 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 51.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25-26% PEG2KMME, 0.8M NAFORMATE, 0.1M REMARK 280 NAACETATE PH 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.73550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 GLU A 4 REMARK 465 HIS A 5 REMARK 465 ARG A 6 REMARK 465 SER A 7 REMARK 465 ALA A 8 REMARK 465 SER A 9 REMARK 465 VAL A 10 REMARK 465 ALA A 158 REMARK 465 ASP A 159 REMARK 465 ARG A 160 REMARK 465 GLY A 161 REMARK 465 GLU A 162 REMARK 465 GLU A 163 REMARK 465 ALA A 164 REMARK 465 ALA A 165 REMARK 465 ALA A 166 REMARK 465 PRO A 167 REMARK 465 ALA A 168 REMARK 465 GLY A 169 REMARK 465 THR A 170 REMARK 465 GLY A 171 REMARK 465 ASP A 172 REMARK 465 ALA A 173 REMARK 465 GLU A 174 REMARK 465 GLU A 175 REMARK 465 GLY A 176 REMARK 465 ALA A 177 REMARK 465 GLU A 178 REMARK 465 GLY A 424 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 GLU B 4 REMARK 465 HIS B 5 REMARK 465 ARG B 6 REMARK 465 SER B 7 REMARK 465 ALA B 8 REMARK 465 SER B 9 REMARK 465 ASP B 159 REMARK 465 ARG B 160 REMARK 465 GLY B 161 REMARK 465 GLU B 162 REMARK 465 GLU B 163 REMARK 465 ALA B 164 REMARK 465 ALA B 165 REMARK 465 ALA B 166 REMARK 465 PRO B 167 REMARK 465 ALA B 168 REMARK 465 GLY B 169 REMARK 465 THR B 170 REMARK 465 GLY B 171 REMARK 465 ASP B 172 REMARK 465 ALA B 173 REMARK 465 GLU B 174 REMARK 465 GLU B 175 REMARK 465 GLY B 176 REMARK 465 ALA B 177 REMARK 465 GLU B 178 REMARK 465 ALA B 179 REMARK 465 GLU B 180 REMARK 465 HIS B 244 REMARK 465 GLN B 245 REMARK 465 GLY B 246 REMARK 465 THR B 247 REMARK 465 GLY B 250 REMARK 465 PRO B 251 REMARK 465 GLY B 252 REMARK 465 ASP B 253 REMARK 465 GLY B 424 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 49 CG OD1 OD2 REMARK 470 GLU A 72 CD OE1 OE2 REMARK 470 GLU A 84 CD OE1 OE2 REMARK 470 GLU A 180 CB CG CD OE1 OE2 REMARK 470 ASP A 181 CB CG OD1 OD2 REMARK 470 ASP A 230 OD1 OD2 REMARK 470 GLU A 249 CB CG CD OE1 OE2 REMARK 470 GLU A 302 CB CG CD OE1 OE2 REMARK 470 GLN A 349 CG CD OE1 NE2 REMARK 470 GLN A 373 CG CD OE1 NE2 REMARK 470 GLU A 377 CG CD OE1 OE2 REMARK 470 LYS A 378 CG CD CE NZ REMARK 470 GLU A 381 CD OE1 OE2 REMARK 470 ARG A 400 CZ NH1 NH2 REMARK 470 GLU A 402 CD OE1 OE2 REMARK 470 VAL B 10 CG1 CG2 REMARK 470 GLU B 72 CG CD OE1 OE2 REMARK 470 GLU B 76 CD OE1 OE2 REMARK 470 GLU B 84 CD OE1 OE2 REMARK 470 GLU B 144 CD OE1 OE2 REMARK 470 GLU B 148 CG CD OE1 OE2 REMARK 470 GLU B 196 CD OE1 OE2 REMARK 470 ASP B 200 CG OD1 OD2 REMARK 470 ASN B 211 CG OD1 ND2 REMARK 470 ASP B 230 CG OD1 OD2 REMARK 470 ASP B 241 CG OD1 OD2 REMARK 470 GLU B 249 CB CG CD OE1 OE2 REMARK 470 ARG B 293 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 108 57.84 -153.40 REMARK 500 ALA A 216 41.48 -87.08 REMARK 500 ALA A 265 -55.97 -126.63 REMARK 500 PHE A 266 64.47 -101.63 REMARK 500 ALA B 216 41.85 -82.84 REMARK 500 ALA B 265 -58.46 -124.23 REMARK 500 PHE B 266 62.92 -100.93 REMARK 500 ASP B 284 48.59 -78.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2053 DISTANCE = 7.06 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A1424 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZIO A1425 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP B1424 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZIO B1425 DBREF 2IYA A 1 424 UNP Q3HTL7 Q3HTL7_STRAT 1 424 DBREF 2IYA B 1 424 UNP Q3HTL7 Q3HTL7_STRAT 1 424 SEQRES 1 A 424 MET THR SER GLU HIS ARG SER ALA SER VAL THR PRO ARG SEQRES 2 A 424 HIS ILE SER PHE PHE ASN ILE PRO GLY HIS GLY HIS VAL SEQRES 3 A 424 ASN PRO SER LEU GLY ILE VAL GLN GLU LEU VAL ALA ARG SEQRES 4 A 424 GLY HIS ARG VAL SER TYR ALA ILE THR ASP GLU PHE ALA SEQRES 5 A 424 ALA GLN VAL LYS ALA ALA GLY ALA THR PRO VAL VAL TYR SEQRES 6 A 424 ASP SER ILE LEU PRO LYS GLU SER ASN PRO GLU GLU SER SEQRES 7 A 424 TRP PRO GLU ASP GLN GLU SER ALA MET GLY LEU PHE LEU SEQRES 8 A 424 ASP GLU ALA VAL ARG VAL LEU PRO GLN LEU GLU ASP ALA SEQRES 9 A 424 TYR ALA ASP ASP ARG PRO ASP LEU ILE VAL TYR ASP ILE SEQRES 10 A 424 ALA SER TRP PRO ALA PRO VAL LEU GLY ARG LYS TRP ASP SEQRES 11 A 424 ILE PRO PHE VAL GLN LEU SER PRO THR PHE VAL ALA TYR SEQRES 12 A 424 GLU GLY PHE GLU GLU ASP VAL PRO ALA VAL GLN ASP PRO SEQRES 13 A 424 THR ALA ASP ARG GLY GLU GLU ALA ALA ALA PRO ALA GLY SEQRES 14 A 424 THR GLY ASP ALA GLU GLU GLY ALA GLU ALA GLU ASP GLY SEQRES 15 A 424 LEU VAL ARG PHE PHE THR ARG LEU SER ALA PHE LEU GLU SEQRES 16 A 424 GLU HIS GLY VAL ASP THR PRO ALA THR GLU PHE LEU ILE SEQRES 17 A 424 ALA PRO ASN ARG CYS ILE VAL ALA LEU PRO ARG THR PHE SEQRES 18 A 424 GLN ILE LYS GLY ASP THR VAL GLY ASP ASN TYR THR PHE SEQRES 19 A 424 VAL GLY PRO THR TYR GLY ASP ARG SER HIS GLN GLY THR SEQRES 20 A 424 TRP GLU GLY PRO GLY ASP GLY ARG PRO VAL LEU LEU ILE SEQRES 21 A 424 ALA LEU GLY SER ALA PHE THR ASP HIS LEU ASP PHE TYR SEQRES 22 A 424 ARG THR CYS LEU SER ALA VAL ASP GLY LEU ASP TRP HIS SEQRES 23 A 424 VAL VAL LEU SER VAL GLY ARG PHE VAL ASP PRO ALA ASP SEQRES 24 A 424 LEU GLY GLU VAL PRO PRO ASN VAL GLU VAL HIS GLN TRP SEQRES 25 A 424 VAL PRO GLN LEU ASP ILE LEU THR LYS ALA SER ALA PHE SEQRES 26 A 424 ILE THR HIS ALA GLY MET GLY SER THR MET GLU ALA LEU SEQRES 27 A 424 SER ASN ALA VAL PRO MET VAL ALA VAL PRO GLN ILE ALA SEQRES 28 A 424 GLU GLN THR MET ASN ALA GLU ARG ILE VAL GLU LEU GLY SEQRES 29 A 424 LEU GLY ARG HIS ILE PRO ARG ASP GLN VAL THR ALA GLU SEQRES 30 A 424 LYS LEU ARG GLU ALA VAL LEU ALA VAL ALA SER ASP PRO SEQRES 31 A 424 GLY VAL ALA GLU ARG LEU ALA ALA VAL ARG GLN GLU ILE SEQRES 32 A 424 ARG GLU ALA GLY GLY ALA ARG ALA ALA ALA ASP ILE LEU SEQRES 33 A 424 GLU GLY ILE LEU ALA GLU ALA GLY SEQRES 1 B 424 MET THR SER GLU HIS ARG SER ALA SER VAL THR PRO ARG SEQRES 2 B 424 HIS ILE SER PHE PHE ASN ILE PRO GLY HIS GLY HIS VAL SEQRES 3 B 424 ASN PRO SER LEU GLY ILE VAL GLN GLU LEU VAL ALA ARG SEQRES 4 B 424 GLY HIS ARG VAL SER TYR ALA ILE THR ASP GLU PHE ALA SEQRES 5 B 424 ALA GLN VAL LYS ALA ALA GLY ALA THR PRO VAL VAL TYR SEQRES 6 B 424 ASP SER ILE LEU PRO LYS GLU SER ASN PRO GLU GLU SER SEQRES 7 B 424 TRP PRO GLU ASP GLN GLU SER ALA MET GLY LEU PHE LEU SEQRES 8 B 424 ASP GLU ALA VAL ARG VAL LEU PRO GLN LEU GLU ASP ALA SEQRES 9 B 424 TYR ALA ASP ASP ARG PRO ASP LEU ILE VAL TYR ASP ILE SEQRES 10 B 424 ALA SER TRP PRO ALA PRO VAL LEU GLY ARG LYS TRP ASP SEQRES 11 B 424 ILE PRO PHE VAL GLN LEU SER PRO THR PHE VAL ALA TYR SEQRES 12 B 424 GLU GLY PHE GLU GLU ASP VAL PRO ALA VAL GLN ASP PRO SEQRES 13 B 424 THR ALA ASP ARG GLY GLU GLU ALA ALA ALA PRO ALA GLY SEQRES 14 B 424 THR GLY ASP ALA GLU GLU GLY ALA GLU ALA GLU ASP GLY SEQRES 15 B 424 LEU VAL ARG PHE PHE THR ARG LEU SER ALA PHE LEU GLU SEQRES 16 B 424 GLU HIS GLY VAL ASP THR PRO ALA THR GLU PHE LEU ILE SEQRES 17 B 424 ALA PRO ASN ARG CYS ILE VAL ALA LEU PRO ARG THR PHE SEQRES 18 B 424 GLN ILE LYS GLY ASP THR VAL GLY ASP ASN TYR THR PHE SEQRES 19 B 424 VAL GLY PRO THR TYR GLY ASP ARG SER HIS GLN GLY THR SEQRES 20 B 424 TRP GLU GLY PRO GLY ASP GLY ARG PRO VAL LEU LEU ILE SEQRES 21 B 424 ALA LEU GLY SER ALA PHE THR ASP HIS LEU ASP PHE TYR SEQRES 22 B 424 ARG THR CYS LEU SER ALA VAL ASP GLY LEU ASP TRP HIS SEQRES 23 B 424 VAL VAL LEU SER VAL GLY ARG PHE VAL ASP PRO ALA ASP SEQRES 24 B 424 LEU GLY GLU VAL PRO PRO ASN VAL GLU VAL HIS GLN TRP SEQRES 25 B 424 VAL PRO GLN LEU ASP ILE LEU THR LYS ALA SER ALA PHE SEQRES 26 B 424 ILE THR HIS ALA GLY MET GLY SER THR MET GLU ALA LEU SEQRES 27 B 424 SER ASN ALA VAL PRO MET VAL ALA VAL PRO GLN ILE ALA SEQRES 28 B 424 GLU GLN THR MET ASN ALA GLU ARG ILE VAL GLU LEU GLY SEQRES 29 B 424 LEU GLY ARG HIS ILE PRO ARG ASP GLN VAL THR ALA GLU SEQRES 30 B 424 LYS LEU ARG GLU ALA VAL LEU ALA VAL ALA SER ASP PRO SEQRES 31 B 424 GLY VAL ALA GLU ARG LEU ALA ALA VAL ARG GLN GLU ILE SEQRES 32 B 424 ARG GLU ALA GLY GLY ALA ARG ALA ALA ALA ASP ILE LEU SEQRES 33 B 424 GLU GLY ILE LEU ALA GLU ALA GLY HET UDP A1424 25 HET ZIO A1425 48 HET UDP B1424 25 HET ZIO B1425 48 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM ZIO (3S,5R,6S,7R,8R,11R,12S,13R,14S,15S)-6-HYDROXY-5,7,8, HETNAM 2 ZIO 11,13,15-HEXAMETHYL-4,10-DIOXO-14-{[3,4,6-TRIDEOXY-3- HETNAM 3 ZIO (DIMETHYLAMINO)-BETA-D-XYLO-HEXOPYRANOSYL]OXY}-1,9- HETNAM 4 ZIO DIOXASPIRO[2.13]HEXADEC-12-YL 2,6-DIDEOXY-3-O-METHYL- HETNAM 5 ZIO ALPHA-L-ARABINO-HEXOPYRANOSIDE HETSYN ZIO OLEANDOMYCIN FORMUL 3 UDP 2(C9 H14 N2 O12 P2) FORMUL 4 ZIO 2(C35 H61 N O12) FORMUL 7 HOH *642(H2 O) HELIX 1 1 GLY A 22 ARG A 39 1 18 HELIX 2 2 THR A 48 GLU A 50 5 3 HELIX 3 3 PHE A 51 GLY A 59 1 9 HELIX 4 4 ASP A 82 TYR A 105 1 24 HELIX 5 5 TRP A 120 ASP A 130 1 11 HELIX 6 6 GLY A 145 VAL A 150 1 6 HELIX 7 7 PRO A 151 GLN A 154 5 4 HELIX 8 8 ALA A 179 HIS A 197 1 19 HELIX 9 9 PRO A 202 ALA A 209 1 8 HELIX 10 10 LYS A 224 VAL A 228 5 5 HELIX 11 11 ARG A 242 GLY A 246 5 5 HELIX 12 12 HIS A 269 ASP A 281 1 13 HELIX 13 13 ASP A 296 GLY A 301 5 6 HELIX 14 14 PRO A 314 THR A 320 1 7 HELIX 15 15 GLY A 330 ASN A 340 1 11 HELIX 16 16 ILE A 350 LEU A 363 1 14 HELIX 17 17 PRO A 370 VAL A 374 5 5 HELIX 18 18 THR A 375 ASP A 389 1 15 HELIX 19 19 ASP A 389 GLU A 405 1 17 HELIX 20 20 GLY A 407 ALA A 423 1 17 HELIX 21 21 GLY B 22 ARG B 39 1 18 HELIX 22 22 THR B 48 ALA B 58 1 11 HELIX 23 23 ASP B 82 ALA B 106 1 25 HELIX 24 24 TRP B 120 ASP B 130 1 11 HELIX 25 25 GLY B 145 VAL B 150 1 6 HELIX 26 26 PRO B 151 GLN B 154 5 4 HELIX 27 27 ASP B 181 HIS B 197 1 17 HELIX 28 28 PRO B 202 ALA B 209 1 8 HELIX 29 29 LYS B 224 VAL B 228 5 5 HELIX 30 30 HIS B 269 ASP B 281 1 13 HELIX 31 31 ASP B 296 GLY B 301 5 6 HELIX 32 32 PRO B 314 THR B 320 1 7 HELIX 33 33 GLY B 330 ASN B 340 1 11 HELIX 34 34 ILE B 350 LEU B 363 1 14 HELIX 35 35 PRO B 370 VAL B 374 5 5 HELIX 36 36 THR B 375 ASP B 389 1 15 HELIX 37 37 ASP B 389 GLU B 405 1 17 HELIX 38 38 GLY B 407 ALA B 423 1 17 SHEET 1 AA 7 THR A 61 VAL A 64 0 SHEET 2 AA 7 ARG A 42 ILE A 47 1 O VAL A 43 N THR A 61 SHEET 3 AA 7 HIS A 14 PHE A 18 1 O ILE A 15 N SER A 44 SHEET 4 AA 7 LEU A 112 ASP A 116 1 O LEU A 112 N SER A 16 SHEET 5 AA 7 PHE A 133 SER A 137 1 O VAL A 134 N TYR A 115 SHEET 6 AA 7 CYS A 213 VAL A 215 1 O ILE A 214 N SER A 137 SHEET 7 AA 7 TYR A 232 PHE A 234 1 O THR A 233 N VAL A 215 SHEET 1 AB 6 VAL A 307 HIS A 310 0 SHEET 2 AB 6 HIS A 286 SER A 290 1 O VAL A 287 N GLU A 308 SHEET 3 AB 6 VAL A 257 ALA A 261 1 O LEU A 258 N VAL A 288 SHEET 4 AB 6 ALA A 324 THR A 327 1 O ALA A 324 N LEU A 259 SHEET 5 AB 6 MET A 344 ALA A 346 1 O VAL A 345 N THR A 327 SHEET 6 AB 6 GLY A 366 HIS A 368 1 O ARG A 367 N ALA A 346 SHEET 1 BA 7 THR B 61 VAL B 64 0 SHEET 2 BA 7 ARG B 42 ILE B 47 1 O VAL B 43 N THR B 61 SHEET 3 BA 7 HIS B 14 PHE B 18 1 O ILE B 15 N SER B 44 SHEET 4 BA 7 LEU B 112 ASP B 116 1 O LEU B 112 N SER B 16 SHEET 5 BA 7 PHE B 133 SER B 137 1 O VAL B 134 N TYR B 115 SHEET 6 BA 7 CYS B 213 VAL B 215 1 O ILE B 214 N SER B 137 SHEET 7 BA 7 TYR B 232 PHE B 234 1 O THR B 233 N VAL B 215 SHEET 1 BB 6 VAL B 307 HIS B 310 0 SHEET 2 BB 6 HIS B 286 SER B 290 1 O VAL B 287 N GLU B 308 SHEET 3 BB 6 VAL B 257 ALA B 261 1 O LEU B 258 N VAL B 288 SHEET 4 BB 6 ALA B 324 THR B 327 1 O ALA B 324 N LEU B 259 SHEET 5 BB 6 MET B 344 ALA B 346 1 O VAL B 345 N THR B 327 SHEET 6 BB 6 GLY B 366 HIS B 368 1 O ARG B 367 N ALA B 346 CISPEP 1 VAL B 10 THR B 11 0 -5.53 SITE 1 AC1 23 GLY A 24 ASN A 27 ARG A 242 GLN A 245 SITE 2 AC1 23 SER A 264 SER A 290 TRP A 312 VAL A 313 SITE 3 AC1 23 GLN A 315 HIS A 328 GLY A 330 MET A 331 SITE 4 AC1 23 GLY A 332 SER A 333 GLU A 336 HOH A2008 SITE 5 AC1 23 HOH A2012 HOH A2207 HOH A2331 HOH A2332 SITE 6 AC1 23 HOH A2333 HOH A2334 HOH A2335 SITE 1 AC2 22 HIS A 25 TRP A 79 PRO A 80 GLN A 83 SITE 2 AC2 22 ALA A 86 MET A 87 PHE A 90 ILE A 117 SITE 3 AC2 22 TRP A 120 THR A 139 PHE A 140 PHE A 146 SITE 4 AC2 22 VAL A 153 LEU A 207 ALA A 265 ALA A 351 SITE 5 AC2 22 GLU A 352 MET A 355 HOH A2332 HOH A2336 SITE 6 AC2 22 HOH A2337 HOH A2338 SITE 1 AC3 23 GLY B 24 ASN B 27 ARG B 242 GLY B 263 SITE 2 AC3 23 SER B 264 SER B 290 TRP B 312 VAL B 313 SITE 3 AC3 23 GLN B 315 HIS B 328 GLY B 330 MET B 331 SITE 4 AC3 23 GLY B 332 SER B 333 GLU B 336 HOH B2007 SITE 5 AC3 23 HOH B2011 HOH B2172 HOH B2233 HOH B2299 SITE 6 AC3 23 HOH B2300 HOH B2301 HOH B2302 SITE 1 AC4 23 HIS B 25 TRP B 79 PRO B 80 GLU B 81 SITE 2 AC4 23 GLN B 83 ALA B 86 MET B 87 PHE B 90 SITE 3 AC4 23 ILE B 117 TRP B 120 THR B 139 PHE B 140 SITE 4 AC4 23 ALA B 142 PHE B 146 LEU B 207 ALA B 265 SITE 5 AC4 23 ALA B 351 GLU B 352 MET B 355 HOH B2069 SITE 6 AC4 23 HOH B2299 HOH B2303 HOH B2304 CRYST1 51.338 103.471 74.590 90.00 94.82 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019479 0.000000 0.001642 0.00000 SCALE2 0.000000 0.009665 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013454 0.00000