data_2IYK # _entry.id 2IYK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2IYK PDBE EBI-29419 WWPDB D_1290029419 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2IYK _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2006-07-18 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kadlec, J.' 1 'Guilligay, D.' 2 'Ravelli, R.B.' 3 'Cusack, S.' 4 # _citation.id primary _citation.title 'Crystal Structure of the Upf2-Interacting Domain of Nonsense-Mediated Mrna Decay Factor Upf1.' _citation.journal_abbrev RNA _citation.journal_volume 12 _citation.page_first 1817 _citation.page_last ? _citation.year 2006 _citation.journal_id_ASTM RNARFU _citation.country UK _citation.journal_id_ISSN 1355-8382 _citation.journal_id_CSD 2122 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16931876 _citation.pdbx_database_id_DOI 10.1261/RNA.177606 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kadlec, J.' 1 primary 'Guilligay, D.' 2 primary 'Ravelli, R.B.' 3 primary 'Cusack, S.' 4 # _cell.entry_id 2IYK _cell.length_a 64.560 _cell.length_b 72.980 _cell.length_c 73.210 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IYK _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'REGULATOR OF NONSENSE TRANSCRIPTS 1' 18215.969 2 3.6.1.- ? 'UPF2-INTERACTING DOMAIN, RESIDUES 115-272' 'CYSTEINE-HISTIDINE RICH' 2 non-polymer syn 'ZINC ION' 65.409 6 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ATP-DEPENDENT HELICASE RENT1, NONSENSE MRNA REDUCING FACTOR 1, NORF1, UP-FRAMESHIFT SUPPRESSOR 1 HOMOLOG, HUPF1, UPF1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAMGTKDLPIHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRN VFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWK EN ; _entity_poly.pdbx_seq_one_letter_code_can ;GAMGTKDLPIHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRN VFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWK EN ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 GLY n 1 5 THR n 1 6 LYS n 1 7 ASP n 1 8 LEU n 1 9 PRO n 1 10 ILE n 1 11 HIS n 1 12 ALA n 1 13 CYS n 1 14 SER n 1 15 TYR n 1 16 CYS n 1 17 GLY n 1 18 ILE n 1 19 HIS n 1 20 ASP n 1 21 PRO n 1 22 ALA n 1 23 CYS n 1 24 VAL n 1 25 VAL n 1 26 TYR n 1 27 CYS n 1 28 ASN n 1 29 THR n 1 30 SER n 1 31 LYS n 1 32 LYS n 1 33 TRP n 1 34 PHE n 1 35 CYS n 1 36 ASN n 1 37 GLY n 1 38 ARG n 1 39 GLY n 1 40 ASN n 1 41 THR n 1 42 SER n 1 43 GLY n 1 44 SER n 1 45 HIS n 1 46 ILE n 1 47 VAL n 1 48 ASN n 1 49 HIS n 1 50 LEU n 1 51 VAL n 1 52 ARG n 1 53 ALA n 1 54 LYS n 1 55 CYS n 1 56 LYS n 1 57 GLU n 1 58 VAL n 1 59 THR n 1 60 LEU n 1 61 HIS n 1 62 LYS n 1 63 ASP n 1 64 GLY n 1 65 PRO n 1 66 LEU n 1 67 GLY n 1 68 GLU n 1 69 THR n 1 70 VAL n 1 71 LEU n 1 72 GLU n 1 73 CYS n 1 74 TYR n 1 75 ASN n 1 76 CYS n 1 77 GLY n 1 78 CYS n 1 79 ARG n 1 80 ASN n 1 81 VAL n 1 82 PHE n 1 83 LEU n 1 84 LEU n 1 85 GLY n 1 86 PHE n 1 87 ILE n 1 88 PRO n 1 89 ALA n 1 90 LYS n 1 91 ALA n 1 92 ASP n 1 93 SER n 1 94 VAL n 1 95 VAL n 1 96 VAL n 1 97 LEU n 1 98 LEU n 1 99 CYS n 1 100 ARG n 1 101 GLN n 1 102 PRO n 1 103 CYS n 1 104 ALA n 1 105 SER n 1 106 GLN n 1 107 SER n 1 108 SER n 1 109 LEU n 1 110 LYS n 1 111 ASP n 1 112 ILE n 1 113 ASN n 1 114 TRP n 1 115 ASP n 1 116 SER n 1 117 SER n 1 118 GLN n 1 119 TRP n 1 120 GLN n 1 121 PRO n 1 122 LEU n 1 123 ILE n 1 124 GLN n 1 125 ASP n 1 126 ARG n 1 127 CYS n 1 128 PHE n 1 129 LEU n 1 130 SER n 1 131 TRP n 1 132 LEU n 1 133 VAL n 1 134 LYS n 1 135 ILE n 1 136 PRO n 1 137 SER n 1 138 GLU n 1 139 GLN n 1 140 GLU n 1 141 GLN n 1 142 LEU n 1 143 ARG n 1 144 ALA n 1 145 ARG n 1 146 GLN n 1 147 ILE n 1 148 THR n 1 149 ALA n 1 150 GLN n 1 151 GLN n 1 152 ILE n 1 153 ASN n 1 154 LYS n 1 155 LEU n 1 156 GLU n 1 157 GLU n 1 158 LEU n 1 159 TRP n 1 160 LYS n 1 161 GLU n 1 162 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PPROEXHTB _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2IYK 1 ? ? 2IYK ? 2 UNP RENT1_HUMAN 1 ? ? Q92900 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2IYK A 1 ? 4 ? 2IYK 1 ? 4 ? 1 4 2 2 2IYK A 5 ? 162 ? Q92900 115 ? 272 ? 5 162 3 1 2IYK B 1 ? 4 ? 2IYK 1 ? 4 ? 1 4 4 2 2IYK B 5 ? 162 ? Q92900 115 ? 272 ? 5 162 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2IYK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.37 _exptl_crystal.density_percent_sol 48.2 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '30% PENTAERYTHRITOL ETHOXYLATE (15/4EO/OH) (V/V), 50 MM AMMONIUM SULPHATE,50 MM BIS-TRIS PH 6.5' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details 'TOROIDAL MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.2821 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 1.2821 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2IYK _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 2.950 _reflns.number_obs 7000 _reflns.number_all ? _reflns.percent_possible_obs 90.9 _reflns.pdbx_Rmerge_I_obs 0.12000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.2000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.900 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.95 _reflns_shell.d_res_low 3.00 _reflns_shell.percent_possible_all 96.5 _reflns_shell.Rmerge_I_obs 0.42000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.900 _reflns_shell.pdbx_redundancy 3.40 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2IYK _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 6685 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 51.71 _refine.ls_d_res_high 2.95 _refine.ls_percent_reflns_obs 91.2 _refine.ls_R_factor_obs 0.223 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.221 _refine.ls_R_factor_R_free 0.259 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.500 _refine.ls_number_reflns_R_free 315 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.901 _refine.correlation_coeff_Fo_to_Fc_free 0.861 _refine.B_iso_mean 7.58 _refine.aniso_B[1][1] 0.08000 _refine.aniso_B[2][2] 0.17000 _refine.aniso_B[3][3] -0.25000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.484 _refine.overall_SU_ML 0.338 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 35.521 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2452 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2458 _refine_hist.d_res_high 2.95 _refine_hist.d_res_low 51.71 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.022 ? 2508 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.229 1.939 ? 3402 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.358 5.000 ? 308 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.625 24.561 ? 114 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.015 15.000 ? 438 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 26.704 15.000 ? 14 'X-RAY DIFFRACTION' ? r_chiral_restr 0.085 0.200 ? 376 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1886 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.198 0.200 ? 1006 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.299 0.200 ? 1687 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.100 0.200 ? 51 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.264 0.200 ? 36 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.271 0.200 ? 3 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.290 1.500 ? 1579 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.516 2.000 ? 2502 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 0.665 3.000 ? 1061 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 1.156 4.500 ? 900 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 A 1041 0.04 0.05 'tight positional' 1 1 'X-RAY DIFFRACTION' ? ? ? 1 A 1041 0.05 0.50 'tight thermal' 1 2 'X-RAY DIFFRACTION' ? ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.95 _refine_ls_shell.d_res_low 3.03 _refine_ls_shell.number_reflns_R_work 523 _refine_ls_shell.R_factor_R_work 0.2770 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2570 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 26 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] 0.089630 _struct_ncs_oper.matrix[1][2] -0.995650 _struct_ncs_oper.matrix[1][3] -0.025400 _struct_ncs_oper.matrix[2][1] -0.995620 _struct_ncs_oper.matrix[2][2] -0.088890 _struct_ncs_oper.matrix[2][3] -0.029020 _struct_ncs_oper.matrix[3][1] 0.026630 _struct_ncs_oper.matrix[3][2] 0.027890 _struct_ncs_oper.matrix[3][3] -0.999260 _struct_ncs_oper.vector[1] 14.87955 _struct_ncs_oper.vector[2] 17.04130 _struct_ncs_oper.vector[3] 16.57996 # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 A 1 2 B 1 # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 A 9 A 88 1 1 ? ? ? ? ? ? ? ? 1 ? 2 B 9 B 88 1 1 ? ? ? ? ? ? ? ? 1 ? 1 A 95 A 104 2 1 ? ? ? ? ? ? ? ? 1 ? 2 B 95 B 104 2 1 ? ? ? ? ? ? ? ? 1 ? 1 A 119 A 159 3 1 ? ? ? ? ? ? ? ? 1 ? 2 B 119 B 159 3 1 ? ? ? ? ? ? ? ? 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 2IYK _struct.title 'Crystal structure of the UPF2-interacting domain of nonsense mediated mRNA decay factor UPF1' _struct.pdbx_descriptor 'REGULATOR OF NONSENSE TRANSCRIPTS 1 (E.C.3.6.1.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2IYK _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;NMD, ZINC, UPF1, HELICASE, HYDROLASE, ZINC-FINGER, NUCLEOTIDE-BINDING, SURVEILLANCE COMPLEX, NONSENSE-MEDIATED MRNA DECAY, ALTERNATIVE SPLICING, NONSENSE MEDIATED MRNA DECAY, ATP-BINDING, METAL-BINDING, PHOSPHORYLATION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 44 ? ALA A 53 ? SER A 44 ALA A 53 1 ? 10 HELX_P HELX_P2 2 SER A 105 ? LYS A 110 ? SER A 105 LYS A 110 1 ? 6 HELX_P HELX_P3 3 ASP A 115 ? TRP A 119 ? ASP A 115 TRP A 119 5 ? 5 HELX_P HELX_P4 4 SER A 137 ? ALA A 144 ? SER A 137 ALA A 144 1 ? 8 HELX_P HELX_P5 5 THR A 148 ? GLU A 161 ? THR A 148 GLU A 161 1 ? 14 HELX_P HELX_P6 6 SER B 44 ? ALA B 53 ? SER B 44 ALA B 53 1 ? 10 HELX_P HELX_P7 7 ASP B 115 ? TRP B 119 ? ASP B 115 TRP B 119 5 ? 5 HELX_P HELX_P8 8 SER B 137 ? ALA B 144 ? SER B 137 ALA B 144 1 ? 8 HELX_P HELX_P9 9 THR B 148 ? GLU B 161 ? THR B 148 GLU B 161 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? C ZN . ZN ? ? ? 1_555 A CYS 16 SG ? ? A ZN 1163 A CYS 16 1_555 ? ? ? ? ? ? ? 2.460 ? metalc2 metalc ? ? C ZN . ZN ? ? ? 1_555 A CYS 13 SG ? ? A ZN 1163 A CYS 13 1_555 ? ? ? ? ? ? ? 2.219 ? metalc3 metalc ? ? C ZN . ZN ? ? ? 1_555 A HIS 45 ND1 ? ? A ZN 1163 A HIS 45 1_555 ? ? ? ? ? ? ? 2.235 ? metalc4 metalc ? ? C ZN . ZN ? ? ? 1_555 A CYS 35 SG ? ? A ZN 1163 A CYS 35 1_555 ? ? ? ? ? ? ? 2.475 ? metalc5 metalc ? ? D ZN . ZN ? ? ? 1_555 A CYS 27 SG ? ? A ZN 1164 A CYS 27 1_555 ? ? ? ? ? ? ? 2.404 ? metalc6 metalc ? ? D ZN . ZN ? ? ? 1_555 A SER 30 OG ? ? A ZN 1164 A SER 30 1_555 ? ? ? ? ? ? ? 2.633 ? metalc7 metalc ? ? D ZN . ZN ? ? ? 1_555 A CYS 55 SG ? ? A ZN 1164 A CYS 55 1_555 ? ? ? ? ? ? ? 2.531 ? metalc8 metalc ? ? D ZN . ZN ? ? ? 1_555 A HIS 49 NE2 ? ? A ZN 1164 A HIS 49 1_555 ? ? ? ? ? ? ? 2.159 ? metalc9 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 76 SG ? ? A ZN 1165 A CYS 76 1_555 ? ? ? ? ? ? ? 2.486 ? metalc10 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 99 SG ? ? A ZN 1165 A CYS 99 1_555 ? ? ? ? ? ? ? 2.544 ? metalc11 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 73 SG ? ? A ZN 1165 A CYS 73 1_555 ? ? ? ? ? ? ? 2.322 ? metalc12 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 103 SG ? ? A ZN 1165 A CYS 103 1_555 ? ? ? ? ? ? ? 2.327 ? metalc13 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 13 SG ? ? B ZN 1163 B CYS 13 1_555 ? ? ? ? ? ? ? 2.377 ? metalc14 metalc ? ? F ZN . ZN ? ? ? 1_555 B HIS 45 ND1 ? ? B ZN 1163 B HIS 45 1_555 ? ? ? ? ? ? ? 2.214 ? metalc15 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 16 SG ? ? B ZN 1163 B CYS 16 1_555 ? ? ? ? ? ? ? 2.519 ? metalc16 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 35 SG ? ? B ZN 1163 B CYS 35 1_555 ? ? ? ? ? ? ? 2.514 ? metalc17 metalc ? ? G ZN . ZN ? ? ? 1_555 B CYS 55 SG ? ? B ZN 1164 B CYS 55 1_555 ? ? ? ? ? ? ? 2.495 ? metalc18 metalc ? ? G ZN . ZN ? ? ? 1_555 B HIS 49 NE2 ? ? B ZN 1164 B HIS 49 1_555 ? ? ? ? ? ? ? 2.318 ? metalc19 metalc ? ? G ZN . ZN ? ? ? 1_555 B SER 30 OG ? ? B ZN 1164 B SER 30 1_555 ? ? ? ? ? ? ? 2.682 ? metalc20 metalc ? ? G ZN . ZN ? ? ? 1_555 B CYS 27 SG ? ? B ZN 1164 B CYS 27 1_555 ? ? ? ? ? ? ? 2.315 ? metalc21 metalc ? ? H ZN . ZN ? ? ? 1_555 B CYS 73 SG ? ? B ZN 1165 B CYS 73 1_555 ? ? ? ? ? ? ? 2.483 ? metalc22 metalc ? ? H ZN . ZN ? ? ? 1_555 B CYS 99 SG ? ? B ZN 1165 B CYS 99 1_555 ? ? ? ? ? ? ? 2.626 ? metalc23 metalc ? ? H ZN . ZN ? ? ? 1_555 B CYS 76 SG ? ? B ZN 1165 B CYS 76 1_555 ? ? ? ? ? ? ? 2.425 ? metalc24 metalc ? ? H ZN . ZN ? ? ? 1_555 B CYS 103 SG ? ? B ZN 1165 B CYS 103 1_555 ? ? ? ? ? ? ? 2.309 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLN 101 A . ? GLN 101 A PRO 102 A ? PRO 102 A 1 -1.13 2 GLN 101 B . ? GLN 101 B PRO 102 B ? PRO 102 B 1 1.01 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 3 ? AB ? 3 ? AC ? 2 ? BA ? 3 ? BB ? 3 ? BC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AC 1 2 ? anti-parallel BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BB 1 2 ? anti-parallel BB 2 3 ? anti-parallel BC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 32 ? CYS A 35 ? LYS A 32 CYS A 35 AA 2 VAL A 24 ? CYS A 27 ? VAL A 24 CYS A 27 AA 3 VAL A 58 ? LEU A 60 ? VAL A 58 LEU A 60 AB 1 VAL A 96 ? CYS A 99 ? VAL A 96 CYS A 99 AB 2 LEU A 84 ? ILE A 87 ? LEU A 84 ILE A 87 AB 3 GLN A 120 ? PRO A 121 ? GLN A 120 PRO A 121 AC 1 ILE A 123 ? GLN A 124 ? ILE A 123 GLN A 124 AC 2 CYS A 127 ? PHE A 128 ? CYS A 127 PHE A 128 BA 1 LYS B 32 ? CYS B 35 ? LYS B 32 CYS B 35 BA 2 VAL B 24 ? CYS B 27 ? VAL B 24 CYS B 27 BA 3 VAL B 58 ? LEU B 60 ? VAL B 58 LEU B 60 BB 1 ASP B 92 ? CYS B 99 ? ASP B 92 CYS B 99 BB 2 LEU B 84 ? ALA B 89 ? LEU B 84 ALA B 89 BB 3 GLN B 120 ? PRO B 121 ? GLN B 120 PRO B 121 BC 1 ILE B 123 ? GLN B 124 ? ILE B 123 GLN B 124 BC 2 CYS B 127 ? PHE B 128 ? CYS B 127 PHE B 128 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N PHE A 34 ? N PHE A 34 O VAL A 25 ? O VAL A 25 AA 2 3 N TYR A 26 ? N TYR A 26 O THR A 59 ? O THR A 59 AB 1 2 N LEU A 98 ? N LEU A 98 O GLY A 85 ? O GLY A 85 AB 2 3 N PHE A 86 ? N PHE A 86 O GLN A 120 ? O GLN A 120 AC 1 2 N GLN A 124 ? N GLN A 124 O CYS A 127 ? O CYS A 127 BA 1 2 N PHE B 34 ? N PHE B 34 O VAL B 25 ? O VAL B 25 BA 2 3 N TYR B 26 ? N TYR B 26 O THR B 59 ? O THR B 59 BB 1 2 N LEU B 98 ? N LEU B 98 O GLY B 85 ? O GLY B 85 BB 2 3 N PHE B 86 ? N PHE B 86 O GLN B 120 ? O GLN B 120 BC 1 2 N GLN B 124 ? N GLN B 124 O CYS B 127 ? O CYS B 127 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A1163' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A1164' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A1165' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN B1163' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN B1164' AC6 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN B1165' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 13 ? CYS A 13 . ? 1_555 ? 2 AC1 4 CYS A 16 ? CYS A 16 . ? 1_555 ? 3 AC1 4 CYS A 35 ? CYS A 35 . ? 1_555 ? 4 AC1 4 HIS A 45 ? HIS A 45 . ? 1_555 ? 5 AC2 4 CYS A 27 ? CYS A 27 . ? 1_555 ? 6 AC2 4 SER A 30 ? SER A 30 . ? 1_555 ? 7 AC2 4 HIS A 49 ? HIS A 49 . ? 1_555 ? 8 AC2 4 CYS A 55 ? CYS A 55 . ? 1_555 ? 9 AC3 4 CYS A 73 ? CYS A 73 . ? 1_555 ? 10 AC3 4 CYS A 76 ? CYS A 76 . ? 1_555 ? 11 AC3 4 CYS A 99 ? CYS A 99 . ? 1_555 ? 12 AC3 4 CYS A 103 ? CYS A 103 . ? 1_555 ? 13 AC4 4 CYS B 13 ? CYS B 13 . ? 1_555 ? 14 AC4 4 CYS B 16 ? CYS B 16 . ? 1_555 ? 15 AC4 4 CYS B 35 ? CYS B 35 . ? 1_555 ? 16 AC4 4 HIS B 45 ? HIS B 45 . ? 1_555 ? 17 AC5 4 CYS B 27 ? CYS B 27 . ? 1_555 ? 18 AC5 4 SER B 30 ? SER B 30 . ? 1_555 ? 19 AC5 4 HIS B 49 ? HIS B 49 . ? 1_555 ? 20 AC5 4 CYS B 55 ? CYS B 55 . ? 1_555 ? 21 AC6 4 CYS B 73 ? CYS B 73 . ? 1_555 ? 22 AC6 4 CYS B 76 ? CYS B 76 . ? 1_555 ? 23 AC6 4 CYS B 99 ? CYS B 99 . ? 1_555 ? 24 AC6 4 CYS B 103 ? CYS B 103 . ? 1_555 ? # _database_PDB_matrix.entry_id 2IYK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2IYK _atom_sites.fract_transf_matrix[1][1] 0.015489 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013702 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013659 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 MET 3 3 ? ? ? A . n A 1 4 GLY 4 4 ? ? ? A . n A 1 5 THR 5 5 ? ? ? A . n A 1 6 LYS 6 6 ? ? ? A . n A 1 7 ASP 7 7 ? ? ? A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 HIS 11 11 11 HIS HIS A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 CYS 13 13 13 CYS CYS A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 TYR 15 15 15 TYR TYR A . n A 1 16 CYS 16 16 16 CYS CYS A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 HIS 19 19 19 HIS HIS A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 CYS 23 23 23 CYS CYS A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 TYR 26 26 26 TYR TYR A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 TRP 33 33 33 TRP TRP A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 CYS 35 35 35 CYS CYS A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 HIS 45 45 45 HIS HIS A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 HIS 49 49 49 HIS HIS A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 CYS 55 55 55 CYS CYS A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 HIS 61 61 61 HIS HIS A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 PRO 65 65 65 PRO PRO A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 CYS 73 73 73 CYS CYS A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 CYS 76 76 76 CYS CYS A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 CYS 78 78 78 CYS CYS A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 PRO 88 88 88 PRO PRO A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 CYS 99 99 99 CYS CYS A . n A 1 100 ARG 100 100 100 ARG ARG A . n A 1 101 GLN 101 101 101 GLN GLN A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 CYS 103 103 103 CYS CYS A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 TRP 114 114 114 TRP TRP A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 GLN 118 118 118 GLN GLN A . n A 1 119 TRP 119 119 119 TRP TRP A . n A 1 120 GLN 120 120 120 GLN GLN A . n A 1 121 PRO 121 121 121 PRO PRO A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 GLN 124 124 124 GLN GLN A . n A 1 125 ASP 125 125 125 ASP ASP A . n A 1 126 ARG 126 126 126 ARG ARG A . n A 1 127 CYS 127 127 127 CYS CYS A . n A 1 128 PHE 128 128 128 PHE PHE A . n A 1 129 LEU 129 129 129 LEU LEU A . n A 1 130 SER 130 130 130 SER SER A . n A 1 131 TRP 131 131 131 TRP TRP A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 LYS 134 134 134 LYS LYS A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 PRO 136 136 136 PRO PRO A . n A 1 137 SER 137 137 137 SER SER A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 GLN 139 139 139 GLN GLN A . n A 1 140 GLU 140 140 140 GLU GLU A . n A 1 141 GLN 141 141 141 GLN GLN A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 ARG 143 143 143 ARG ARG A . n A 1 144 ALA 144 144 144 ALA ALA A . n A 1 145 ARG 145 145 145 ARG ARG A . n A 1 146 GLN 146 146 146 GLN GLN A . n A 1 147 ILE 147 147 147 ILE ILE A . n A 1 148 THR 148 148 148 THR THR A . n A 1 149 ALA 149 149 149 ALA ALA A . n A 1 150 GLN 150 150 150 GLN GLN A . n A 1 151 GLN 151 151 151 GLN GLN A . n A 1 152 ILE 152 152 152 ILE ILE A . n A 1 153 ASN 153 153 153 ASN ASN A . n A 1 154 LYS 154 154 154 LYS LYS A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 GLU 156 156 156 GLU GLU A . n A 1 157 GLU 157 157 157 GLU GLU A . n A 1 158 LEU 158 158 158 LEU LEU A . n A 1 159 TRP 159 159 159 TRP TRP A . n A 1 160 LYS 160 160 160 LYS LYS A . n A 1 161 GLU 161 161 161 GLU GLU A . n A 1 162 ASN 162 162 162 ASN ASN A . n B 1 1 GLY 1 1 ? ? ? B . n B 1 2 ALA 2 2 ? ? ? B . n B 1 3 MET 3 3 ? ? ? B . n B 1 4 GLY 4 4 ? ? ? B . n B 1 5 THR 5 5 ? ? ? B . n B 1 6 LYS 6 6 ? ? ? B . n B 1 7 ASP 7 7 ? ? ? B . n B 1 8 LEU 8 8 8 LEU LEU B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 ILE 10 10 10 ILE ILE B . n B 1 11 HIS 11 11 11 HIS HIS B . n B 1 12 ALA 12 12 12 ALA ALA B . n B 1 13 CYS 13 13 13 CYS CYS B . n B 1 14 SER 14 14 14 SER SER B . n B 1 15 TYR 15 15 15 TYR TYR B . n B 1 16 CYS 16 16 16 CYS CYS B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 ILE 18 18 18 ILE ILE B . n B 1 19 HIS 19 19 19 HIS HIS B . n B 1 20 ASP 20 20 20 ASP ASP B . n B 1 21 PRO 21 21 21 PRO PRO B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 CYS 23 23 23 CYS CYS B . n B 1 24 VAL 24 24 24 VAL VAL B . n B 1 25 VAL 25 25 25 VAL VAL B . n B 1 26 TYR 26 26 26 TYR TYR B . n B 1 27 CYS 27 27 27 CYS CYS B . n B 1 28 ASN 28 28 28 ASN ASN B . n B 1 29 THR 29 29 29 THR THR B . n B 1 30 SER 30 30 30 SER SER B . n B 1 31 LYS 31 31 31 LYS LYS B . n B 1 32 LYS 32 32 32 LYS LYS B . n B 1 33 TRP 33 33 33 TRP TRP B . n B 1 34 PHE 34 34 34 PHE PHE B . n B 1 35 CYS 35 35 35 CYS CYS B . n B 1 36 ASN 36 36 36 ASN ASN B . n B 1 37 GLY 37 37 37 GLY GLY B . n B 1 38 ARG 38 38 38 ARG ARG B . n B 1 39 GLY 39 39 39 GLY GLY B . n B 1 40 ASN 40 40 40 ASN ASN B . n B 1 41 THR 41 41 41 THR THR B . n B 1 42 SER 42 42 42 SER SER B . n B 1 43 GLY 43 43 43 GLY GLY B . n B 1 44 SER 44 44 44 SER SER B . n B 1 45 HIS 45 45 45 HIS HIS B . n B 1 46 ILE 46 46 46 ILE ILE B . n B 1 47 VAL 47 47 47 VAL VAL B . n B 1 48 ASN 48 48 48 ASN ASN B . n B 1 49 HIS 49 49 49 HIS HIS B . n B 1 50 LEU 50 50 50 LEU LEU B . n B 1 51 VAL 51 51 51 VAL VAL B . n B 1 52 ARG 52 52 52 ARG ARG B . n B 1 53 ALA 53 53 53 ALA ALA B . n B 1 54 LYS 54 54 54 LYS LYS B . n B 1 55 CYS 55 55 55 CYS CYS B . n B 1 56 LYS 56 56 56 LYS LYS B . n B 1 57 GLU 57 57 57 GLU GLU B . n B 1 58 VAL 58 58 58 VAL VAL B . n B 1 59 THR 59 59 59 THR THR B . n B 1 60 LEU 60 60 60 LEU LEU B . n B 1 61 HIS 61 61 61 HIS HIS B . n B 1 62 LYS 62 62 62 LYS LYS B . n B 1 63 ASP 63 63 63 ASP ASP B . n B 1 64 GLY 64 64 64 GLY GLY B . n B 1 65 PRO 65 65 65 PRO PRO B . n B 1 66 LEU 66 66 66 LEU LEU B . n B 1 67 GLY 67 67 67 GLY GLY B . n B 1 68 GLU 68 68 68 GLU GLU B . n B 1 69 THR 69 69 69 THR THR B . n B 1 70 VAL 70 70 70 VAL VAL B . n B 1 71 LEU 71 71 71 LEU LEU B . n B 1 72 GLU 72 72 72 GLU GLU B . n B 1 73 CYS 73 73 73 CYS CYS B . n B 1 74 TYR 74 74 74 TYR TYR B . n B 1 75 ASN 75 75 75 ASN ASN B . n B 1 76 CYS 76 76 76 CYS CYS B . n B 1 77 GLY 77 77 77 GLY GLY B . n B 1 78 CYS 78 78 78 CYS CYS B . n B 1 79 ARG 79 79 79 ARG ARG B . n B 1 80 ASN 80 80 80 ASN ASN B . n B 1 81 VAL 81 81 81 VAL VAL B . n B 1 82 PHE 82 82 82 PHE PHE B . n B 1 83 LEU 83 83 83 LEU LEU B . n B 1 84 LEU 84 84 84 LEU LEU B . n B 1 85 GLY 85 85 85 GLY GLY B . n B 1 86 PHE 86 86 86 PHE PHE B . n B 1 87 ILE 87 87 87 ILE ILE B . n B 1 88 PRO 88 88 88 PRO PRO B . n B 1 89 ALA 89 89 89 ALA ALA B . n B 1 90 LYS 90 90 90 LYS LYS B . n B 1 91 ALA 91 91 91 ALA ALA B . n B 1 92 ASP 92 92 92 ASP ASP B . n B 1 93 SER 93 93 93 SER SER B . n B 1 94 VAL 94 94 94 VAL VAL B . n B 1 95 VAL 95 95 95 VAL VAL B . n B 1 96 VAL 96 96 96 VAL VAL B . n B 1 97 LEU 97 97 97 LEU LEU B . n B 1 98 LEU 98 98 98 LEU LEU B . n B 1 99 CYS 99 99 99 CYS CYS B . n B 1 100 ARG 100 100 100 ARG ARG B . n B 1 101 GLN 101 101 101 GLN GLN B . n B 1 102 PRO 102 102 102 PRO PRO B . n B 1 103 CYS 103 103 103 CYS CYS B . n B 1 104 ALA 104 104 104 ALA ALA B . n B 1 105 SER 105 105 105 SER SER B . n B 1 106 GLN 106 106 106 GLN GLN B . n B 1 107 SER 107 107 107 SER SER B . n B 1 108 SER 108 108 108 SER SER B . n B 1 109 LEU 109 109 109 LEU LEU B . n B 1 110 LYS 110 110 110 LYS LYS B . n B 1 111 ASP 111 111 111 ASP ASP B . n B 1 112 ILE 112 112 112 ILE ILE B . n B 1 113 ASN 113 113 113 ASN ASN B . n B 1 114 TRP 114 114 114 TRP TRP B . n B 1 115 ASP 115 115 115 ASP ASP B . n B 1 116 SER 116 116 116 SER SER B . n B 1 117 SER 117 117 117 SER SER B . n B 1 118 GLN 118 118 118 GLN GLN B . n B 1 119 TRP 119 119 119 TRP TRP B . n B 1 120 GLN 120 120 120 GLN GLN B . n B 1 121 PRO 121 121 121 PRO PRO B . n B 1 122 LEU 122 122 122 LEU LEU B . n B 1 123 ILE 123 123 123 ILE ILE B . n B 1 124 GLN 124 124 124 GLN GLN B . n B 1 125 ASP 125 125 125 ASP ASP B . n B 1 126 ARG 126 126 126 ARG ARG B . n B 1 127 CYS 127 127 127 CYS CYS B . n B 1 128 PHE 128 128 128 PHE PHE B . n B 1 129 LEU 129 129 129 LEU LEU B . n B 1 130 SER 130 130 130 SER SER B . n B 1 131 TRP 131 131 131 TRP TRP B . n B 1 132 LEU 132 132 132 LEU LEU B . n B 1 133 VAL 133 133 133 VAL VAL B . n B 1 134 LYS 134 134 134 LYS LYS B . n B 1 135 ILE 135 135 135 ILE ILE B . n B 1 136 PRO 136 136 136 PRO PRO B . n B 1 137 SER 137 137 137 SER SER B . n B 1 138 GLU 138 138 138 GLU GLU B . n B 1 139 GLN 139 139 139 GLN GLN B . n B 1 140 GLU 140 140 140 GLU GLU B . n B 1 141 GLN 141 141 141 GLN GLN B . n B 1 142 LEU 142 142 142 LEU LEU B . n B 1 143 ARG 143 143 143 ARG ARG B . n B 1 144 ALA 144 144 144 ALA ALA B . n B 1 145 ARG 145 145 145 ARG ARG B . n B 1 146 GLN 146 146 146 GLN GLN B . n B 1 147 ILE 147 147 147 ILE ILE B . n B 1 148 THR 148 148 148 THR THR B . n B 1 149 ALA 149 149 149 ALA ALA B . n B 1 150 GLN 150 150 150 GLN GLN B . n B 1 151 GLN 151 151 151 GLN GLN B . n B 1 152 ILE 152 152 152 ILE ILE B . n B 1 153 ASN 153 153 153 ASN ASN B . n B 1 154 LYS 154 154 154 LYS LYS B . n B 1 155 LEU 155 155 155 LEU LEU B . n B 1 156 GLU 156 156 156 GLU GLU B . n B 1 157 GLU 157 157 157 GLU GLU B . n B 1 158 LEU 158 158 158 LEU LEU B . n B 1 159 TRP 159 159 159 TRP TRP B . n B 1 160 LYS 160 160 160 LYS LYS B . n B 1 161 GLU 161 161 161 GLU GLU B . n B 1 162 ASN 162 162 162 ASN ASN B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN 1 1163 1163 ZN ZN A . D 2 ZN 1 1164 1164 ZN ZN A . E 2 ZN 1 1165 1165 ZN ZN A . F 2 ZN 1 1163 1163 ZN ZN B . G 2 ZN 1 1164 1164 ZN ZN B . H 2 ZN 1 1165 1165 ZN ZN B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS monomeric 1 2 author_and_software_defined_assembly PQS monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E 2 1 B,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 16 ? A CYS 16 ? 1_555 ZN ? C ZN . ? A ZN 1163 ? 1_555 SG ? A CYS 13 ? A CYS 13 ? 1_555 109.2 ? 2 SG ? A CYS 16 ? A CYS 16 ? 1_555 ZN ? C ZN . ? A ZN 1163 ? 1_555 ND1 ? A HIS 45 ? A HIS 45 ? 1_555 114.3 ? 3 SG ? A CYS 13 ? A CYS 13 ? 1_555 ZN ? C ZN . ? A ZN 1163 ? 1_555 ND1 ? A HIS 45 ? A HIS 45 ? 1_555 116.1 ? 4 SG ? A CYS 16 ? A CYS 16 ? 1_555 ZN ? C ZN . ? A ZN 1163 ? 1_555 SG ? A CYS 35 ? A CYS 35 ? 1_555 109.7 ? 5 SG ? A CYS 13 ? A CYS 13 ? 1_555 ZN ? C ZN . ? A ZN 1163 ? 1_555 SG ? A CYS 35 ? A CYS 35 ? 1_555 114.6 ? 6 ND1 ? A HIS 45 ? A HIS 45 ? 1_555 ZN ? C ZN . ? A ZN 1163 ? 1_555 SG ? A CYS 35 ? A CYS 35 ? 1_555 92.0 ? 7 SG ? A CYS 27 ? A CYS 27 ? 1_555 ZN ? D ZN . ? A ZN 1164 ? 1_555 OG ? A SER 30 ? A SER 30 ? 1_555 85.3 ? 8 SG ? A CYS 27 ? A CYS 27 ? 1_555 ZN ? D ZN . ? A ZN 1164 ? 1_555 SG ? A CYS 55 ? A CYS 55 ? 1_555 113.2 ? 9 OG ? A SER 30 ? A SER 30 ? 1_555 ZN ? D ZN . ? A ZN 1164 ? 1_555 SG ? A CYS 55 ? A CYS 55 ? 1_555 141.5 ? 10 SG ? A CYS 27 ? A CYS 27 ? 1_555 ZN ? D ZN . ? A ZN 1164 ? 1_555 NE2 ? A HIS 49 ? A HIS 49 ? 1_555 107.3 ? 11 OG ? A SER 30 ? A SER 30 ? 1_555 ZN ? D ZN . ? A ZN 1164 ? 1_555 NE2 ? A HIS 49 ? A HIS 49 ? 1_555 76.9 ? 12 SG ? A CYS 55 ? A CYS 55 ? 1_555 ZN ? D ZN . ? A ZN 1164 ? 1_555 NE2 ? A HIS 49 ? A HIS 49 ? 1_555 123.9 ? 13 SG ? A CYS 76 ? A CYS 76 ? 1_555 ZN ? E ZN . ? A ZN 1165 ? 1_555 SG ? A CYS 99 ? A CYS 99 ? 1_555 100.5 ? 14 SG ? A CYS 76 ? A CYS 76 ? 1_555 ZN ? E ZN . ? A ZN 1165 ? 1_555 SG ? A CYS 73 ? A CYS 73 ? 1_555 117.7 ? 15 SG ? A CYS 99 ? A CYS 99 ? 1_555 ZN ? E ZN . ? A ZN 1165 ? 1_555 SG ? A CYS 73 ? A CYS 73 ? 1_555 107.3 ? 16 SG ? A CYS 76 ? A CYS 76 ? 1_555 ZN ? E ZN . ? A ZN 1165 ? 1_555 SG ? A CYS 103 ? A CYS 103 ? 1_555 110.3 ? 17 SG ? A CYS 99 ? A CYS 99 ? 1_555 ZN ? E ZN . ? A ZN 1165 ? 1_555 SG ? A CYS 103 ? A CYS 103 ? 1_555 111.9 ? 18 SG ? A CYS 73 ? A CYS 73 ? 1_555 ZN ? E ZN . ? A ZN 1165 ? 1_555 SG ? A CYS 103 ? A CYS 103 ? 1_555 108.9 ? 19 SG ? B CYS 13 ? B CYS 13 ? 1_555 ZN ? F ZN . ? B ZN 1163 ? 1_555 ND1 ? B HIS 45 ? B HIS 45 ? 1_555 119.7 ? 20 SG ? B CYS 13 ? B CYS 13 ? 1_555 ZN ? F ZN . ? B ZN 1163 ? 1_555 SG ? B CYS 16 ? B CYS 16 ? 1_555 107.5 ? 21 ND1 ? B HIS 45 ? B HIS 45 ? 1_555 ZN ? F ZN . ? B ZN 1163 ? 1_555 SG ? B CYS 16 ? B CYS 16 ? 1_555 112.6 ? 22 SG ? B CYS 13 ? B CYS 13 ? 1_555 ZN ? F ZN . ? B ZN 1163 ? 1_555 SG ? B CYS 35 ? B CYS 35 ? 1_555 117.2 ? 23 ND1 ? B HIS 45 ? B HIS 45 ? 1_555 ZN ? F ZN . ? B ZN 1163 ? 1_555 SG ? B CYS 35 ? B CYS 35 ? 1_555 94.1 ? 24 SG ? B CYS 16 ? B CYS 16 ? 1_555 ZN ? F ZN . ? B ZN 1163 ? 1_555 SG ? B CYS 35 ? B CYS 35 ? 1_555 104.7 ? 25 SG ? B CYS 55 ? B CYS 55 ? 1_555 ZN ? G ZN . ? B ZN 1164 ? 1_555 NE2 ? B HIS 49 ? B HIS 49 ? 1_555 125.9 ? 26 SG ? B CYS 55 ? B CYS 55 ? 1_555 ZN ? G ZN . ? B ZN 1164 ? 1_555 OG ? B SER 30 ? B SER 30 ? 1_555 141.3 ? 27 NE2 ? B HIS 49 ? B HIS 49 ? 1_555 ZN ? G ZN . ? B ZN 1164 ? 1_555 OG ? B SER 30 ? B SER 30 ? 1_555 71.6 ? 28 SG ? B CYS 55 ? B CYS 55 ? 1_555 ZN ? G ZN . ? B ZN 1164 ? 1_555 SG ? B CYS 27 ? B CYS 27 ? 1_555 118.9 ? 29 NE2 ? B HIS 49 ? B HIS 49 ? 1_555 ZN ? G ZN . ? B ZN 1164 ? 1_555 SG ? B CYS 27 ? B CYS 27 ? 1_555 103.1 ? 30 OG ? B SER 30 ? B SER 30 ? 1_555 ZN ? G ZN . ? B ZN 1164 ? 1_555 SG ? B CYS 27 ? B CYS 27 ? 1_555 83.0 ? 31 SG ? B CYS 73 ? B CYS 73 ? 1_555 ZN ? H ZN . ? B ZN 1165 ? 1_555 SG ? B CYS 99 ? B CYS 99 ? 1_555 104.7 ? 32 SG ? B CYS 73 ? B CYS 73 ? 1_555 ZN ? H ZN . ? B ZN 1165 ? 1_555 SG ? B CYS 76 ? B CYS 76 ? 1_555 118.3 ? 33 SG ? B CYS 99 ? B CYS 99 ? 1_555 ZN ? H ZN . ? B ZN 1165 ? 1_555 SG ? B CYS 76 ? B CYS 76 ? 1_555 99.9 ? 34 SG ? B CYS 73 ? B CYS 73 ? 1_555 ZN ? H ZN . ? B ZN 1165 ? 1_555 SG ? B CYS 103 ? B CYS 103 ? 1_555 108.0 ? 35 SG ? B CYS 99 ? B CYS 99 ? 1_555 ZN ? H ZN . ? B ZN 1165 ? 1_555 SG ? B CYS 103 ? B CYS 103 ? 1_555 111.2 ? 36 SG ? B CYS 76 ? B CYS 76 ? 1_555 ZN ? H ZN . ? B ZN 1165 ? 1_555 SG ? B CYS 103 ? B CYS 103 ? 1_555 114.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-30 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 3.2466 -9.2344 8.2527 0.2456 0.1960 0.2361 -0.0532 -0.0146 0.0270 2.8576 3.2056 7.6951 -0.3096 1.7630 0.1789 0.0670 0.0590 -0.0556 -0.5722 0.0837 0.2930 0.2920 -0.1861 -0.1507 'X-RAY DIFFRACTION' 2 ? refined 19.3349 -10.3819 20.7306 0.2773 0.2476 0.2290 0.0139 0.0060 0.0048 3.8075 1.2089 3.9314 -0.9494 3.1391 -1.1847 -0.0080 0.3233 -0.0360 -0.1246 -0.0695 -0.2416 0.0449 0.5960 0.0775 'X-RAY DIFFRACTION' 3 ? refined -1.3260 -1.5322 4.8520 0.2942 0.1139 0.3567 -0.1241 -0.1720 0.0317 6.9549 3.8902 5.8245 -1.4777 1.0864 -1.5762 -0.1230 0.3103 0.4735 -0.5230 0.1565 0.7307 -0.0591 -0.4922 -0.0335 'X-RAY DIFFRACTION' 4 ? refined 24.1070 14.6712 8.3252 0.1717 0.2169 0.1903 -0.0051 -0.0136 -0.0234 4.1171 3.1081 5.5344 -0.2115 -2.0933 0.9738 -0.0064 -0.2359 -0.0484 0.0896 0.1571 -0.0644 -0.0602 0.3349 -0.1508 'X-RAY DIFFRACTION' 5 ? refined 26.4854 -1.9810 -3.8898 0.2352 0.2070 0.2273 -0.0083 -0.0260 0.0081 1.7841 4.7026 5.4563 -1.8248 -2.0223 2.8245 -0.1528 -0.0376 -0.4250 0.1602 0.0774 0.1849 0.6419 0.2942 0.0753 'X-RAY DIFFRACTION' 6 ? refined 15.9483 18.2881 11.6759 -0.0126 0.2759 0.1528 -0.0039 0.0555 -0.0926 5.7387 7.8251 5.4382 -0.1067 -1.1580 0.7128 0.0919 -0.4690 0.5008 0.3474 0.1447 0.6004 -0.5389 -0.2690 -0.2366 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 8 ? ? A 73 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 74 ? ? A 130 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 131 ? ? A 162 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 B 8 ? ? B 72 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 B 73 ? ? B 130 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 131 ? ? B 162 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 SHELXD phasing . ? 4 SHARP phasing . ? 5 DM phasing . ? 6 # _pdbx_entry_details.entry_id 2IYK _pdbx_entry_details.compound_details ;PART OF A POST-SPLICING MULTIPROTEIN COMPLEX. INVOLVED IN NONSENSE-MEDIATED DECAY (NMD) OF MRNAS CONTAINING PREMATURE STOP CODONS. ESSENTIAL FOR EMBRYONIC VIABILITY. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;FOUR RESIDUES AT THE N-TERMINUS ORIGINATING FROM THE VECTOR ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 36 ? ? -99.59 30.50 2 1 ASP A 92 ? ? 179.19 147.63 3 1 SER A 93 ? ? -113.84 70.54 4 1 LYS A 110 ? ? 55.19 12.70 5 1 SER A 117 ? ? -59.91 -3.20 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A MET 3 ? A MET 3 4 1 Y 1 A GLY 4 ? A GLY 4 5 1 Y 1 A THR 5 ? A THR 5 6 1 Y 1 A LYS 6 ? A LYS 6 7 1 Y 1 A ASP 7 ? A ASP 7 8 1 Y 1 B GLY 1 ? B GLY 1 9 1 Y 1 B ALA 2 ? B ALA 2 10 1 Y 1 B MET 3 ? B MET 3 11 1 Y 1 B GLY 4 ? B GLY 4 12 1 Y 1 B THR 5 ? B THR 5 13 1 Y 1 B LYS 6 ? B LYS 6 14 1 Y 1 B ASP 7 ? B ASP 7 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #