data_2J1L # _entry.id 2J1L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2J1L pdb_00002j1l 10.2210/pdb2j1l/pdb PDBE EBI-29675 ? ? WWPDB D_1290029675 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2J1L _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2006-08-14 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pike, A.C.W.' 1 'Johansson, C.' 2 'Gileadi, C.' 3 'Niesen, F.H.' 4 'Sobott, F.' 5 'Schoch, G.' 6 'Elkins, J.' 7 'Smee, C.' 8 'Gorrec, F.' 9 'Watt, S.' 10 'Bray, J.' 11 'Turnbull, A.P.' 12 'von Delft, F.' 13 'Arrowsmith, C.' 14 'Edwards, A.' 15 'Weigelt, J.' 16 'Sundstrom, M.' 17 'Doyle, D.' 18 # _citation.id primary _citation.title 'Crystal Structure of Human Rho-Related GTP-Binding Protein Rhod' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pike, A.C.W.' 1 ? primary 'Johansson, C.' 2 ? primary 'Gileadi, C.' 3 ? primary 'Niesen, F.H.' 4 ? primary 'Sobott, F.' 5 ? primary 'Schoch, G.' 6 ? primary 'Elkins, J.' 7 ? primary 'Smee, C.' 8 ? primary 'Gorrec, F.' 9 ? primary 'Watt, S.' 10 ? primary 'Bray, J.' 11 ? primary 'Turnbull, A.P.' 12 ? primary 'von Delft, F.' 13 ? primary 'Arrowsmith, C.' 14 ? primary 'Edwards, A.' 15 ? primary 'Weigelt, J.' 16 ? primary 'Sundstrom, M.' 17 ? primary 'Doyle, D.' 18 ? # _cell.entry_id 2J1L _cell.length_a 66.811 _cell.length_b 66.810 _cell.length_c 103.921 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J1L _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RHO-RELATED GTP-BINDING PROTEIN RHOD' 24016.293 1 3.6.5.2 ? ? ? 2 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 8 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RHO-RELATED PROTEIN HP1, RHOHP1, RHOD' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MHHHHHHSSGVDLGTENLYFQSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGK PVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKL RRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSRGRN ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHSSGVDLGTENLYFQSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGK PVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKL RRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSRGRN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 SER n 1 9 SER n 1 10 GLY n 1 11 VAL n 1 12 ASP n 1 13 LEU n 1 14 GLY n 1 15 THR n 1 16 GLU n 1 17 ASN n 1 18 LEU n 1 19 TYR n 1 20 PHE n 1 21 GLN n 1 22 SER n 1 23 MET n 1 24 ALA n 1 25 GLY n 1 26 GLU n 1 27 GLU n 1 28 ALA n 1 29 PRO n 1 30 PRO n 1 31 GLY n 1 32 VAL n 1 33 ARG n 1 34 SER n 1 35 VAL n 1 36 LYS n 1 37 VAL n 1 38 VAL n 1 39 LEU n 1 40 VAL n 1 41 GLY n 1 42 ASP n 1 43 GLY n 1 44 GLY n 1 45 CYS n 1 46 GLY n 1 47 LYS n 1 48 THR n 1 49 SER n 1 50 LEU n 1 51 LEU n 1 52 MET n 1 53 VAL n 1 54 PHE n 1 55 ALA n 1 56 ASP n 1 57 GLY n 1 58 ALA n 1 59 PHE n 1 60 PRO n 1 61 GLU n 1 62 SER n 1 63 TYR n 1 64 THR n 1 65 PRO n 1 66 THR n 1 67 VAL n 1 68 PHE n 1 69 GLU n 1 70 ARG n 1 71 TYR n 1 72 MET n 1 73 VAL n 1 74 ASN n 1 75 LEU n 1 76 GLN n 1 77 VAL n 1 78 LYS n 1 79 GLY n 1 80 LYS n 1 81 PRO n 1 82 VAL n 1 83 HIS n 1 84 LEU n 1 85 HIS n 1 86 ILE n 1 87 TRP n 1 88 ASP n 1 89 THR n 1 90 ALA n 1 91 GLY n 1 92 GLN n 1 93 ASP n 1 94 ASP n 1 95 TYR n 1 96 ASP n 1 97 ARG n 1 98 LEU n 1 99 ARG n 1 100 PRO n 1 101 LEU n 1 102 PHE n 1 103 TYR n 1 104 PRO n 1 105 ASP n 1 106 ALA n 1 107 SER n 1 108 VAL n 1 109 LEU n 1 110 LEU n 1 111 LEU n 1 112 CYS n 1 113 PHE n 1 114 ASP n 1 115 VAL n 1 116 THR n 1 117 SER n 1 118 PRO n 1 119 ASN n 1 120 SER n 1 121 PHE n 1 122 ASP n 1 123 ASN n 1 124 ILE n 1 125 PHE n 1 126 ASN n 1 127 ARG n 1 128 TRP n 1 129 TYR n 1 130 PRO n 1 131 GLU n 1 132 VAL n 1 133 ASN n 1 134 HIS n 1 135 PHE n 1 136 CYS n 1 137 LYS n 1 138 LYS n 1 139 VAL n 1 140 PRO n 1 141 ILE n 1 142 ILE n 1 143 VAL n 1 144 VAL n 1 145 GLY n 1 146 CYS n 1 147 LYS n 1 148 THR n 1 149 ASP n 1 150 LEU n 1 151 ARG n 1 152 LYS n 1 153 ASP n 1 154 LYS n 1 155 SER n 1 156 LEU n 1 157 VAL n 1 158 ASN n 1 159 LYS n 1 160 LEU n 1 161 ARG n 1 162 ARG n 1 163 ASN n 1 164 GLY n 1 165 LEU n 1 166 GLU n 1 167 PRO n 1 168 VAL n 1 169 THR n 1 170 TYR n 1 171 HIS n 1 172 ARG n 1 173 GLY n 1 174 GLN n 1 175 GLU n 1 176 MET n 1 177 ALA n 1 178 ARG n 1 179 SER n 1 180 VAL n 1 181 GLY n 1 182 ALA n 1 183 VAL n 1 184 ALA n 1 185 TYR n 1 186 LEU n 1 187 GLU n 1 188 CYS n 1 189 SER n 1 190 ALA n 1 191 ARG n 1 192 LEU n 1 193 HIS n 1 194 ASP n 1 195 ASN n 1 196 VAL n 1 197 HIS n 1 198 ALA n 1 199 VAL n 1 200 PHE n 1 201 GLN n 1 202 GLU n 1 203 ALA n 1 204 ALA n 1 205 GLU n 1 206 VAL n 1 207 ALA n 1 208 LEU n 1 209 SER n 1 210 SER n 1 211 ARG n 1 212 GLY n 1 213 ARG n 1 214 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PNIC-BSA4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description MGC # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2J1L 1 ? ? 2J1L ? 2 UNP RHOD_HUMAN 1 ? ? O00212 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2J1L A 1 ? 23 ? 2J1L -16 ? 6 ? -16 6 2 2 2J1L A 24 ? 214 ? O00212 7 ? 197 ? 7 197 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2J1L _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.79 _exptl_crystal.density_percent_sol 56 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '19% PEG6K, 0.4M NH4CL, 15% ETG, 0.05M MES PH6.0, pH 6.00' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2006-05-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength 0.979 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2J1L _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.600 _reflns.d_resolution_high 2.500 _reflns.number_obs 9805 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.09000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.8000 _reflns.B_iso_Wilson_estimate 82.90 _reflns.pdbx_redundancy 8.100 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.62 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.66000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.300 _reflns_shell.pdbx_redundancy 5.30 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2J1L _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 9279 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.219 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.217 _refine.ls_R_factor_R_free 0.242 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 467 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.955 _refine.correlation_coeff_Fo_to_Fc_free 0.947 _refine.B_iso_mean 51.86 _refine.aniso_B[1][1] 3.50000 _refine.aniso_B[2][2] 3.50000 _refine.aniso_B[3][3] -5.25000 _refine.aniso_B[1][2] 1.75000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. ELECTRON DENSITY SUGGESTS HIGH LIKELIHOOD OF A DOMAIN SWAP. IN THE CRYSTAL, THE AMINO TERMINAL RESIDUES 15- 39 APPEAR TO BE EXCHANGED WITH AN ADJACENT MOLECULE. HOWEVER THE INTERVENING 'SWITCH 1' REGION BETWEEN RESIDUES 39 AND 47 IS DISORDERED. CONSEQUENTLY THE COMPACT FORM OF THE MOLECULE IS PRESENTED IN THIS ENTRY AS THE DOMAIN SWAP CANNOT BE CONFIRMED UNAMBIGUOUSLY. MASS SPECTROMETRIC ANALYSIS OF THE CRYSTALS CONFIRM THAT THE MOLECULE IS INTACT. ; _refine.pdbx_starting_model 'PDB ENTRY 1MH1' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.285 _refine.pdbx_overall_ESU_R_Free 0.221 _refine.overall_SU_ML 0.188 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 17.082 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1160 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 8 _refine_hist.number_atoms_total 1197 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.021 ? 1214 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 757 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.401 1.967 ? 1659 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.894 3.000 ? 1847 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.389 5.000 ? 154 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.856 23.617 ? 47 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.431 15.000 ? 171 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 23.310 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.074 0.200 ? 195 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1350 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 246 'X-RAY DIFFRACTION' ? r_nbd_refined 0.230 0.200 ? 231 'X-RAY DIFFRACTION' ? r_nbd_other 0.185 0.200 ? 728 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.181 0.200 ? 580 'X-RAY DIFFRACTION' ? r_nbtor_other 0.086 0.200 ? 647 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.145 0.200 ? 34 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.093 0.200 ? 5 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.097 0.200 ? 12 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.499 1.500 ? 792 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.923 2.000 ? 1244 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.353 3.000 ? 487 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 2.128 4.500 ? 415 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.56 _refine_ls_shell.number_reflns_R_work 676 _refine_ls_shell.R_factor_R_work 0.3840 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.4380 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 41 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2J1L _struct.title 'Crystal Structure of Human Rho-related GTP-binding protein RhoD' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2J1L _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'GTPASE, MEMBRANE, GTP-BINDING, PRENYLATION, HYDROLASE, NUCLEOTIDE-BINDING, METHYLATION, LIPOPROTEIN, ENDOSOME DYNAMICS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 46 ? ASP A 56 ? GLY A 29 ASP A 39 1 ? 11 HELX_P HELX_P2 2 SER A 117 ? ARG A 127 ? SER A 100 ARG A 110 1 ? 11 HELX_P HELX_P3 3 ARG A 127 ? CYS A 136 ? ARG A 110 CYS A 119 1 ? 10 HELX_P HELX_P4 4 LYS A 147 ? LYS A 152 ? LYS A 130 LYS A 135 5 ? 6 HELX_P HELX_P5 5 ASP A 153 ? ASN A 163 ? ASP A 136 ASN A 146 1 ? 11 HELX_P HELX_P6 6 THR A 169 ? VAL A 180 ? THR A 152 VAL A 163 1 ? 12 HELX_P HELX_P7 7 ASN A 195 ? SER A 210 ? ASN A 178 SER A 193 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A THR 48 OG1 ? ? ? 1_555 C MG . MG ? ? A THR 31 A MG 1195 1_555 ? ? ? ? ? ? ? 2.360 ? ? metalc2 metalc ? ? B GDP . O1B ? ? ? 1_555 C MG . MG ? ? A GDP 1194 A MG 1195 1_555 ? ? ? ? ? ? ? 2.160 ? ? metalc3 metalc ? ? B GDP . O3B ? ? ? 1_555 C MG . MG ? ? A GDP 1194 A MG 1195 1_555 ? ? ? ? ? ? ? 2.629 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 1195 A HOH 2002 1_555 ? ? ? ? ? ? ? 2.163 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 1195 A HOH 2003 1_555 ? ? ? ? ? ? ? 2.153 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 1195 A HOH 2004 1_555 ? ? ? ? ? ? ? 2.190 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel AA 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLU A 69 ? VAL A 77 ? GLU A 52 VAL A 60 AA 2 LYS A 80 ? ASP A 88 ? LYS A 63 ASP A 71 AA 3 SER A 34 ? GLY A 41 ? SER A 17 GLY A 24 AA 4 ALA A 106 ? ASP A 114 ? ALA A 89 ASP A 97 AA 5 ILE A 141 ? CYS A 146 ? ILE A 124 CYS A 129 AA 6 ALA A 184 ? GLU A 187 ? ALA A 167 GLU A 170 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 77 ? N VAL A 60 O LYS A 80 ? O LYS A 63 AA 2 3 N HIS A 85 ? N HIS A 68 O VAL A 35 ? O VAL A 18 AA 3 4 N LYS A 36 ? N LYS A 19 O ALA A 106 ? O ALA A 89 AA 4 5 N LEU A 111 ? N LEU A 94 O ILE A 142 ? O ILE A 125 AA 5 6 N VAL A 143 ? N VAL A 126 O ALA A 184 ? O ALA A 167 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MG A1195' AC2 Software ? ? ? ? 16 'BINDING SITE FOR RESIDUE GDP A1194' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 THR A 48 ? THR A 31 . ? 1_555 ? 2 AC1 5 GDP B . ? GDP A 1194 . ? 1_555 ? 3 AC1 5 HOH D . ? HOH A 2002 . ? 1_555 ? 4 AC1 5 HOH D . ? HOH A 2003 . ? 1_555 ? 5 AC1 5 HOH D . ? HOH A 2004 . ? 1_555 ? 6 AC2 16 ASP A 42 ? ASP A 25 . ? 1_555 ? 7 AC2 16 GLY A 44 ? GLY A 27 . ? 1_555 ? 8 AC2 16 CYS A 45 ? CYS A 28 . ? 1_555 ? 9 AC2 16 GLY A 46 ? GLY A 29 . ? 1_555 ? 10 AC2 16 LYS A 47 ? LYS A 30 . ? 1_555 ? 11 AC2 16 THR A 48 ? THR A 31 . ? 1_555 ? 12 AC2 16 SER A 49 ? SER A 32 . ? 1_555 ? 13 AC2 16 LYS A 147 ? LYS A 130 . ? 1_555 ? 14 AC2 16 ASP A 149 ? ASP A 132 . ? 1_555 ? 15 AC2 16 LEU A 150 ? LEU A 133 . ? 1_555 ? 16 AC2 16 SER A 189 ? SER A 172 . ? 1_555 ? 17 AC2 16 ALA A 190 ? ALA A 173 . ? 1_555 ? 18 AC2 16 ARG A 191 ? ARG A 174 . ? 1_555 ? 19 AC2 16 MG C . ? MG A 1195 . ? 1_555 ? 20 AC2 16 HOH D . ? HOH A 2001 . ? 1_555 ? 21 AC2 16 HOH D . ? HOH A 2002 . ? 1_555 ? # _database_PDB_matrix.entry_id 2J1L _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2J1L _atom_sites.fract_transf_matrix[1][1] 0.014968 _atom_sites.fract_transf_matrix[1][2] 0.008642 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017283 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009623 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -16 ? ? ? A . n A 1 2 HIS 2 -15 ? ? ? A . n A 1 3 HIS 3 -14 ? ? ? A . n A 1 4 HIS 4 -13 ? ? ? A . n A 1 5 HIS 5 -12 ? ? ? A . n A 1 6 HIS 6 -11 ? ? ? A . n A 1 7 HIS 7 -10 ? ? ? A . n A 1 8 SER 8 -9 ? ? ? A . n A 1 9 SER 9 -8 ? ? ? A . n A 1 10 GLY 10 -7 ? ? ? A . n A 1 11 VAL 11 -6 ? ? ? A . n A 1 12 ASP 12 -5 ? ? ? A . n A 1 13 LEU 13 -4 ? ? ? A . n A 1 14 GLY 14 -3 ? ? ? A . n A 1 15 THR 15 -2 ? ? ? A . n A 1 16 GLU 16 -1 ? ? ? A . n A 1 17 ASN 17 0 ? ? ? A . n A 1 18 LEU 18 1 ? ? ? A . n A 1 19 TYR 19 2 ? ? ? A . n A 1 20 PHE 20 3 ? ? ? A . n A 1 21 GLN 21 4 ? ? ? A . n A 1 22 SER 22 5 ? ? ? A . n A 1 23 MET 23 6 ? ? ? A . n A 1 24 ALA 24 7 ? ? ? A . n A 1 25 GLY 25 8 ? ? ? A . n A 1 26 GLU 26 9 ? ? ? A . n A 1 27 GLU 27 10 ? ? ? A . n A 1 28 ALA 28 11 ? ? ? A . n A 1 29 PRO 29 12 ? ? ? A . n A 1 30 PRO 30 13 ? ? ? A . n A 1 31 GLY 31 14 ? ? ? A . n A 1 32 VAL 32 15 15 VAL VAL A . n A 1 33 ARG 33 16 16 ARG ARG A . n A 1 34 SER 34 17 17 SER SER A . n A 1 35 VAL 35 18 18 VAL VAL A . n A 1 36 LYS 36 19 19 LYS LYS A . n A 1 37 VAL 37 20 20 VAL VAL A . n A 1 38 VAL 38 21 21 VAL VAL A . n A 1 39 LEU 39 22 22 LEU LEU A . n A 1 40 VAL 40 23 23 VAL VAL A . n A 1 41 GLY 41 24 24 GLY GLY A . n A 1 42 ASP 42 25 25 ASP ASP A . n A 1 43 GLY 43 26 26 GLY GLY A . n A 1 44 GLY 44 27 27 GLY GLY A . n A 1 45 CYS 45 28 28 CYS CYS A . n A 1 46 GLY 46 29 29 GLY GLY A . n A 1 47 LYS 47 30 30 LYS LYS A . n A 1 48 THR 48 31 31 THR THR A . n A 1 49 SER 49 32 32 SER SER A . n A 1 50 LEU 50 33 33 LEU LEU A . n A 1 51 LEU 51 34 34 LEU LEU A . n A 1 52 MET 52 35 35 MET MET A . n A 1 53 VAL 53 36 36 VAL VAL A . n A 1 54 PHE 54 37 37 PHE PHE A . n A 1 55 ALA 55 38 38 ALA ALA A . n A 1 56 ASP 56 39 39 ASP ASP A . n A 1 57 GLY 57 40 ? ? ? A . n A 1 58 ALA 58 41 ? ? ? A . n A 1 59 PHE 59 42 ? ? ? A . n A 1 60 PRO 60 43 ? ? ? A . n A 1 61 GLU 61 44 ? ? ? A . n A 1 62 SER 62 45 ? ? ? A . n A 1 63 TYR 63 46 ? ? ? A . n A 1 64 THR 64 47 47 THR THR A . n A 1 65 PRO 65 48 48 PRO PRO A . n A 1 66 THR 66 49 49 THR THR A . n A 1 67 VAL 67 50 50 VAL VAL A . n A 1 68 PHE 68 51 51 PHE PHE A . n A 1 69 GLU 69 52 52 GLU GLU A . n A 1 70 ARG 70 53 53 ARG ARG A . n A 1 71 TYR 71 54 54 TYR TYR A . n A 1 72 MET 72 55 55 MET MET A . n A 1 73 VAL 73 56 56 VAL VAL A . n A 1 74 ASN 74 57 57 ASN ASN A . n A 1 75 LEU 75 58 58 LEU LEU A . n A 1 76 GLN 76 59 59 GLN GLN A . n A 1 77 VAL 77 60 60 VAL VAL A . n A 1 78 LYS 78 61 61 LYS LYS A . n A 1 79 GLY 79 62 62 GLY GLY A . n A 1 80 LYS 80 63 63 LYS LYS A . n A 1 81 PRO 81 64 64 PRO PRO A . n A 1 82 VAL 82 65 65 VAL VAL A . n A 1 83 HIS 83 66 66 HIS HIS A . n A 1 84 LEU 84 67 67 LEU LEU A . n A 1 85 HIS 85 68 68 HIS HIS A . n A 1 86 ILE 86 69 69 ILE ILE A . n A 1 87 TRP 87 70 70 TRP TRP A . n A 1 88 ASP 88 71 71 ASP ASP A . n A 1 89 THR 89 72 72 THR THR A . n A 1 90 ALA 90 73 ? ? ? A . n A 1 91 GLY 91 74 ? ? ? A . n A 1 92 GLN 92 75 ? ? ? A . n A 1 93 ASP 93 76 ? ? ? A . n A 1 94 ASP 94 77 ? ? ? A . n A 1 95 TYR 95 78 ? ? ? A . n A 1 96 ASP 96 79 ? ? ? A . n A 1 97 ARG 97 80 ? ? ? A . n A 1 98 LEU 98 81 ? ? ? A . n A 1 99 ARG 99 82 ? ? ? A . n A 1 100 PRO 100 83 ? ? ? A . n A 1 101 LEU 101 84 ? ? ? A . n A 1 102 PHE 102 85 ? ? ? A . n A 1 103 TYR 103 86 ? ? ? A . n A 1 104 PRO 104 87 ? ? ? A . n A 1 105 ASP 105 88 88 ASP ASP A . n A 1 106 ALA 106 89 89 ALA ALA A . n A 1 107 SER 107 90 90 SER SER A . n A 1 108 VAL 108 91 91 VAL VAL A . n A 1 109 LEU 109 92 92 LEU LEU A . n A 1 110 LEU 110 93 93 LEU LEU A . n A 1 111 LEU 111 94 94 LEU LEU A . n A 1 112 CYS 112 95 95 CYS CYS A . n A 1 113 PHE 113 96 96 PHE PHE A . n A 1 114 ASP 114 97 97 ASP ASP A . n A 1 115 VAL 115 98 98 VAL VAL A . n A 1 116 THR 116 99 99 THR THR A . n A 1 117 SER 117 100 100 SER SER A . n A 1 118 PRO 118 101 101 PRO PRO A . n A 1 119 ASN 119 102 102 ASN ASN A . n A 1 120 SER 120 103 103 SER SER A . n A 1 121 PHE 121 104 104 PHE PHE A . n A 1 122 ASP 122 105 105 ASP ASP A . n A 1 123 ASN 123 106 106 ASN ASN A . n A 1 124 ILE 124 107 107 ILE ILE A . n A 1 125 PHE 125 108 108 PHE PHE A . n A 1 126 ASN 126 109 109 ASN ASN A . n A 1 127 ARG 127 110 110 ARG ARG A . n A 1 128 TRP 128 111 111 TRP TRP A . n A 1 129 TYR 129 112 112 TYR TYR A . n A 1 130 PRO 130 113 113 PRO PRO A . n A 1 131 GLU 131 114 114 GLU GLU A . n A 1 132 VAL 132 115 115 VAL VAL A . n A 1 133 ASN 133 116 116 ASN ASN A . n A 1 134 HIS 134 117 117 HIS HIS A . n A 1 135 PHE 135 118 118 PHE PHE A . n A 1 136 CYS 136 119 119 CYS CYS A . n A 1 137 LYS 137 120 120 LYS LYS A . n A 1 138 LYS 138 121 121 LYS LYS A . n A 1 139 VAL 139 122 122 VAL VAL A . n A 1 140 PRO 140 123 123 PRO PRO A . n A 1 141 ILE 141 124 124 ILE ILE A . n A 1 142 ILE 142 125 125 ILE ILE A . n A 1 143 VAL 143 126 126 VAL VAL A . n A 1 144 VAL 144 127 127 VAL VAL A . n A 1 145 GLY 145 128 128 GLY GLY A . n A 1 146 CYS 146 129 129 CYS CYS A . n A 1 147 LYS 147 130 130 LYS LYS A . n A 1 148 THR 148 131 131 THR THR A . n A 1 149 ASP 149 132 132 ASP ASP A . n A 1 150 LEU 150 133 133 LEU LEU A . n A 1 151 ARG 151 134 134 ARG ARG A . n A 1 152 LYS 152 135 135 LYS LYS A . n A 1 153 ASP 153 136 136 ASP ASP A . n A 1 154 LYS 154 137 137 LYS LYS A . n A 1 155 SER 155 138 138 SER SER A . n A 1 156 LEU 156 139 139 LEU LEU A . n A 1 157 VAL 157 140 140 VAL VAL A . n A 1 158 ASN 158 141 141 ASN ASN A . n A 1 159 LYS 159 142 142 LYS LYS A . n A 1 160 LEU 160 143 143 LEU LEU A . n A 1 161 ARG 161 144 144 ARG ARG A . n A 1 162 ARG 162 145 145 ARG ARG A . n A 1 163 ASN 163 146 146 ASN ASN A . n A 1 164 GLY 164 147 147 GLY GLY A . n A 1 165 LEU 165 148 148 LEU LEU A . n A 1 166 GLU 166 149 149 GLU GLU A . n A 1 167 PRO 167 150 150 PRO PRO A . n A 1 168 VAL 168 151 151 VAL VAL A . n A 1 169 THR 169 152 152 THR THR A . n A 1 170 TYR 170 153 153 TYR TYR A . n A 1 171 HIS 171 154 154 HIS HIS A . n A 1 172 ARG 172 155 155 ARG ARG A . n A 1 173 GLY 173 156 156 GLY GLY A . n A 1 174 GLN 174 157 157 GLN GLN A . n A 1 175 GLU 175 158 158 GLU GLU A . n A 1 176 MET 176 159 159 MET MET A . n A 1 177 ALA 177 160 160 ALA ALA A . n A 1 178 ARG 178 161 161 ARG ARG A . n A 1 179 SER 179 162 162 SER SER A . n A 1 180 VAL 180 163 163 VAL VAL A . n A 1 181 GLY 181 164 164 GLY GLY A . n A 1 182 ALA 182 165 165 ALA ALA A . n A 1 183 VAL 183 166 166 VAL VAL A . n A 1 184 ALA 184 167 167 ALA ALA A . n A 1 185 TYR 185 168 168 TYR TYR A . n A 1 186 LEU 186 169 169 LEU LEU A . n A 1 187 GLU 187 170 170 GLU GLU A . n A 1 188 CYS 188 171 171 CYS CYS A . n A 1 189 SER 189 172 172 SER SER A . n A 1 190 ALA 190 173 173 ALA ALA A . n A 1 191 ARG 191 174 174 ARG ARG A . n A 1 192 LEU 192 175 175 LEU LEU A . n A 1 193 HIS 193 176 176 HIS HIS A . n A 1 194 ASP 194 177 177 ASP ASP A . n A 1 195 ASN 195 178 178 ASN ASN A . n A 1 196 VAL 196 179 179 VAL VAL A . n A 1 197 HIS 197 180 180 HIS HIS A . n A 1 198 ALA 198 181 181 ALA ALA A . n A 1 199 VAL 199 182 182 VAL VAL A . n A 1 200 PHE 200 183 183 PHE PHE A . n A 1 201 GLN 201 184 184 GLN GLN A . n A 1 202 GLU 202 185 185 GLU GLU A . n A 1 203 ALA 203 186 186 ALA ALA A . n A 1 204 ALA 204 187 187 ALA ALA A . n A 1 205 GLU 205 188 188 GLU GLU A . n A 1 206 VAL 206 189 189 VAL VAL A . n A 1 207 ALA 207 190 190 ALA ALA A . n A 1 208 LEU 208 191 191 LEU LEU A . n A 1 209 SER 209 192 192 SER SER A . n A 1 210 SER 210 193 193 SER SER A . n A 1 211 ARG 211 194 ? ? ? A . n A 1 212 GLY 212 195 ? ? ? A . n A 1 213 ARG 213 196 ? ? ? A . n A 1 214 ASN 214 197 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP 1 1194 1194 GDP GDP A . C 3 MG 1 1195 1195 MG MG A . D 4 HOH 1 2001 2001 HOH HOH A . D 4 HOH 2 2002 2002 HOH HOH A . D 4 HOH 3 2003 2003 HOH HOH A . D 4 HOH 4 2004 2004 HOH HOH A . D 4 HOH 5 2005 2005 HOH HOH A . D 4 HOH 6 2006 2006 HOH HOH A . D 4 HOH 7 2007 2007 HOH HOH A . D 4 HOH 8 2008 2008 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG1 ? A THR 48 ? A THR 31 ? 1_555 MG ? C MG . ? A MG 1195 ? 1_555 O1B ? B GDP . ? A GDP 1194 ? 1_555 73.4 ? 2 OG1 ? A THR 48 ? A THR 31 ? 1_555 MG ? C MG . ? A MG 1195 ? 1_555 O3B ? B GDP . ? A GDP 1194 ? 1_555 131.8 ? 3 O1B ? B GDP . ? A GDP 1194 ? 1_555 MG ? C MG . ? A MG 1195 ? 1_555 O3B ? B GDP . ? A GDP 1194 ? 1_555 60.5 ? 4 OG1 ? A THR 48 ? A THR 31 ? 1_555 MG ? C MG . ? A MG 1195 ? 1_555 O ? D HOH . ? A HOH 2002 ? 1_555 66.4 ? 5 O1B ? B GDP . ? A GDP 1194 ? 1_555 MG ? C MG . ? A MG 1195 ? 1_555 O ? D HOH . ? A HOH 2002 ? 1_555 80.6 ? 6 O3B ? B GDP . ? A GDP 1194 ? 1_555 MG ? C MG . ? A MG 1195 ? 1_555 O ? D HOH . ? A HOH 2002 ? 1_555 91.6 ? 7 OG1 ? A THR 48 ? A THR 31 ? 1_555 MG ? C MG . ? A MG 1195 ? 1_555 O ? D HOH . ? A HOH 2003 ? 1_555 62.6 ? 8 O1B ? B GDP . ? A GDP 1194 ? 1_555 MG ? C MG . ? A MG 1195 ? 1_555 O ? D HOH . ? A HOH 2003 ? 1_555 134.2 ? 9 O3B ? B GDP . ? A GDP 1194 ? 1_555 MG ? C MG . ? A MG 1195 ? 1_555 O ? D HOH . ? A HOH 2003 ? 1_555 151.3 ? 10 O ? D HOH . ? A HOH 2002 ? 1_555 MG ? C MG . ? A MG 1195 ? 1_555 O ? D HOH . ? A HOH 2003 ? 1_555 71.0 ? 11 OG1 ? A THR 48 ? A THR 31 ? 1_555 MG ? C MG . ? A MG 1195 ? 1_555 O ? D HOH . ? A HOH 2004 ? 1_555 74.8 ? 12 O1B ? B GDP . ? A GDP 1194 ? 1_555 MG ? C MG . ? A MG 1195 ? 1_555 O ? D HOH . ? A HOH 2004 ? 1_555 104.0 ? 13 O3B ? B GDP . ? A GDP 1194 ? 1_555 MG ? C MG . ? A MG 1195 ? 1_555 O ? D HOH . ? A HOH 2004 ? 1_555 127.7 ? 14 O ? D HOH . ? A HOH 2002 ? 1_555 MG ? C MG . ? A MG 1195 ? 1_555 O ? D HOH . ? A HOH 2004 ? 1_555 137.8 ? 15 O ? D HOH . ? A HOH 2003 ? 1_555 MG ? C MG . ? A MG 1195 ? 1_555 O ? D HOH . ? A HOH 2004 ? 1_555 77.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' Other 8 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation_author 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_database_status 6 4 'Structure model' pdbx_initial_refinement_model 7 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation_author.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_pdbx_database_status.status_code_sf' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -38.2871 24.4599 -5.4356 -0.0130 -0.0764 -0.0881 0.0167 0.1196 0.0420 11.4699 6.6300 9.1797 0.6257 2.0025 -1.3850 0.0695 0.4811 0.6235 -0.0719 -0.0939 0.3939 -0.7586 -0.7704 0.0244 'X-RAY DIFFRACTION' 2 ? refined -33.1927 18.7363 -1.2702 0.0098 -0.1121 -0.1551 -0.0267 0.0570 0.0431 6.5086 4.5666 10.5221 -0.7604 2.0541 -1.5226 0.2588 0.0513 -0.2514 0.3723 -0.2599 -0.0177 0.0828 0.0149 0.0011 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 15 ? ? A 39 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 47 ? ? A 193 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 61 ? ? 26.76 60.42 2 1 ARG A 110 ? ? -132.14 -43.70 3 1 LYS A 120 ? ? 48.41 -107.72 4 1 LYS A 121 ? ? -91.81 56.08 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A VAL 15 ? CG1 ? A VAL 32 CG1 2 1 Y 1 A VAL 15 ? CG2 ? A VAL 32 CG2 3 1 Y 1 A ARG 16 ? NE ? A ARG 33 NE 4 1 Y 1 A ARG 16 ? CZ ? A ARG 33 CZ 5 1 Y 1 A ARG 16 ? NH1 ? A ARG 33 NH1 6 1 Y 1 A ARG 16 ? NH2 ? A ARG 33 NH2 7 1 Y 1 A LYS 19 ? CE ? A LYS 36 CE 8 1 Y 1 A LYS 19 ? NZ ? A LYS 36 NZ 9 1 Y 1 A MET 35 ? CE ? A MET 52 CE 10 1 Y 1 A ASP 39 ? CG ? A ASP 56 CG 11 1 Y 1 A ASP 39 ? OD1 ? A ASP 56 OD1 12 1 Y 1 A ASP 39 ? OD2 ? A ASP 56 OD2 13 1 Y 1 A THR 47 ? OG1 ? A THR 64 OG1 14 1 Y 1 A THR 47 ? CG2 ? A THR 64 CG2 15 1 Y 1 A MET 55 ? CG ? A MET 72 CG 16 1 Y 1 A MET 55 ? SD ? A MET 72 SD 17 1 Y 1 A MET 55 ? CE ? A MET 72 CE 18 1 Y 1 A LEU 58 ? CD1 ? A LEU 75 CD1 19 1 Y 1 A LEU 58 ? CD2 ? A LEU 75 CD2 20 1 Y 1 A LYS 61 ? CG ? A LYS 78 CG 21 1 Y 1 A LYS 61 ? CD ? A LYS 78 CD 22 1 Y 1 A LYS 61 ? CE ? A LYS 78 CE 23 1 Y 1 A LYS 61 ? NZ ? A LYS 78 NZ 24 1 Y 1 A LYS 63 ? CD ? A LYS 80 CD 25 1 Y 1 A LYS 63 ? CE ? A LYS 80 CE 26 1 Y 1 A LYS 63 ? NZ ? A LYS 80 NZ 27 1 Y 1 A ASP 88 ? CG ? A ASP 105 CG 28 1 Y 1 A ASP 88 ? OD1 ? A ASP 105 OD1 29 1 Y 1 A ASP 88 ? OD2 ? A ASP 105 OD2 30 1 Y 1 A GLU 114 ? CD ? A GLU 131 CD 31 1 Y 1 A GLU 114 ? OE1 ? A GLU 131 OE1 32 1 Y 1 A GLU 114 ? OE2 ? A GLU 131 OE2 33 1 Y 1 A VAL 115 ? CG1 ? A VAL 132 CG1 34 1 Y 1 A VAL 115 ? CG2 ? A VAL 132 CG2 35 1 Y 1 A PHE 118 ? CG ? A PHE 135 CG 36 1 Y 1 A PHE 118 ? CD1 ? A PHE 135 CD1 37 1 Y 1 A PHE 118 ? CD2 ? A PHE 135 CD2 38 1 Y 1 A PHE 118 ? CE1 ? A PHE 135 CE1 39 1 Y 1 A PHE 118 ? CE2 ? A PHE 135 CE2 40 1 Y 1 A PHE 118 ? CZ ? A PHE 135 CZ 41 1 Y 1 A LYS 120 ? CB ? A LYS 137 CB 42 1 Y 1 A LYS 120 ? CG ? A LYS 137 CG 43 1 Y 1 A LYS 120 ? CD ? A LYS 137 CD 44 1 Y 1 A LYS 120 ? CE ? A LYS 137 CE 45 1 Y 1 A LYS 120 ? NZ ? A LYS 137 NZ 46 1 Y 1 A LYS 121 ? CB ? A LYS 138 CB 47 1 Y 1 A LYS 121 ? CG ? A LYS 138 CG 48 1 Y 1 A LYS 121 ? CD ? A LYS 138 CD 49 1 Y 1 A LYS 121 ? CE ? A LYS 138 CE 50 1 Y 1 A LYS 121 ? NZ ? A LYS 138 NZ 51 1 Y 1 A ILE 124 ? CD1 ? A ILE 141 CD1 52 1 Y 1 A LYS 135 ? CD ? A LYS 152 CD 53 1 Y 1 A LYS 135 ? CE ? A LYS 152 CE 54 1 Y 1 A LYS 135 ? NZ ? A LYS 152 NZ 55 1 Y 1 A LYS 137 ? CE ? A LYS 154 CE 56 1 Y 1 A LYS 137 ? NZ ? A LYS 154 NZ 57 1 Y 1 A LYS 142 ? CE ? A LYS 159 CE 58 1 Y 1 A LYS 142 ? NZ ? A LYS 159 NZ 59 1 Y 1 A ARG 144 ? CD ? A ARG 161 CD 60 1 Y 1 A ARG 144 ? NE ? A ARG 161 NE 61 1 Y 1 A ARG 144 ? CZ ? A ARG 161 CZ 62 1 Y 1 A ARG 144 ? NH1 ? A ARG 161 NH1 63 1 Y 1 A ARG 144 ? NH2 ? A ARG 161 NH2 64 1 Y 1 A ARG 145 ? CG ? A ARG 162 CG 65 1 Y 1 A ARG 145 ? CD ? A ARG 162 CD 66 1 Y 1 A ARG 145 ? NE ? A ARG 162 NE 67 1 Y 1 A ARG 145 ? CZ ? A ARG 162 CZ 68 1 Y 1 A ARG 145 ? NH1 ? A ARG 162 NH1 69 1 Y 1 A ARG 145 ? NH2 ? A ARG 162 NH2 70 1 Y 1 A GLU 149 ? CD ? A GLU 166 CD 71 1 Y 1 A GLU 149 ? OE1 ? A GLU 166 OE1 72 1 Y 1 A GLU 149 ? OE2 ? A GLU 166 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -16 ? A MET 1 2 1 Y 1 A HIS -15 ? A HIS 2 3 1 Y 1 A HIS -14 ? A HIS 3 4 1 Y 1 A HIS -13 ? A HIS 4 5 1 Y 1 A HIS -12 ? A HIS 5 6 1 Y 1 A HIS -11 ? A HIS 6 7 1 Y 1 A HIS -10 ? A HIS 7 8 1 Y 1 A SER -9 ? A SER 8 9 1 Y 1 A SER -8 ? A SER 9 10 1 Y 1 A GLY -7 ? A GLY 10 11 1 Y 1 A VAL -6 ? A VAL 11 12 1 Y 1 A ASP -5 ? A ASP 12 13 1 Y 1 A LEU -4 ? A LEU 13 14 1 Y 1 A GLY -3 ? A GLY 14 15 1 Y 1 A THR -2 ? A THR 15 16 1 Y 1 A GLU -1 ? A GLU 16 17 1 Y 1 A ASN 0 ? A ASN 17 18 1 Y 1 A LEU 1 ? A LEU 18 19 1 Y 1 A TYR 2 ? A TYR 19 20 1 Y 1 A PHE 3 ? A PHE 20 21 1 Y 1 A GLN 4 ? A GLN 21 22 1 Y 1 A SER 5 ? A SER 22 23 1 Y 1 A MET 6 ? A MET 23 24 1 Y 1 A ALA 7 ? A ALA 24 25 1 Y 1 A GLY 8 ? A GLY 25 26 1 Y 1 A GLU 9 ? A GLU 26 27 1 Y 1 A GLU 10 ? A GLU 27 28 1 Y 1 A ALA 11 ? A ALA 28 29 1 Y 1 A PRO 12 ? A PRO 29 30 1 Y 1 A PRO 13 ? A PRO 30 31 1 Y 1 A GLY 14 ? A GLY 31 32 1 Y 1 A GLY 40 ? A GLY 57 33 1 Y 1 A ALA 41 ? A ALA 58 34 1 Y 1 A PHE 42 ? A PHE 59 35 1 Y 1 A PRO 43 ? A PRO 60 36 1 Y 1 A GLU 44 ? A GLU 61 37 1 Y 1 A SER 45 ? A SER 62 38 1 Y 1 A TYR 46 ? A TYR 63 39 1 Y 1 A ALA 73 ? A ALA 90 40 1 Y 1 A GLY 74 ? A GLY 91 41 1 Y 1 A GLN 75 ? A GLN 92 42 1 Y 1 A ASP 76 ? A ASP 93 43 1 Y 1 A ASP 77 ? A ASP 94 44 1 Y 1 A TYR 78 ? A TYR 95 45 1 Y 1 A ASP 79 ? A ASP 96 46 1 Y 1 A ARG 80 ? A ARG 97 47 1 Y 1 A LEU 81 ? A LEU 98 48 1 Y 1 A ARG 82 ? A ARG 99 49 1 Y 1 A PRO 83 ? A PRO 100 50 1 Y 1 A LEU 84 ? A LEU 101 51 1 Y 1 A PHE 85 ? A PHE 102 52 1 Y 1 A TYR 86 ? A TYR 103 53 1 Y 1 A PRO 87 ? A PRO 104 54 1 Y 1 A ARG 194 ? A ARG 211 55 1 Y 1 A GLY 195 ? A GLY 212 56 1 Y 1 A ARG 196 ? A ARG 213 57 1 Y 1 A ASN 197 ? A ASN 214 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GDP PB P N N 88 GDP O1B O N N 89 GDP O2B O N N 90 GDP O3B O N N 91 GDP O3A O N N 92 GDP PA P N N 93 GDP O1A O N N 94 GDP O2A O N N 95 GDP "O5'" O N N 96 GDP "C5'" C N N 97 GDP "C4'" C N R 98 GDP "O4'" O N N 99 GDP "C3'" C N S 100 GDP "O3'" O N N 101 GDP "C2'" C N R 102 GDP "O2'" O N N 103 GDP "C1'" C N R 104 GDP N9 N Y N 105 GDP C8 C Y N 106 GDP N7 N Y N 107 GDP C5 C Y N 108 GDP C6 C N N 109 GDP O6 O N N 110 GDP N1 N N N 111 GDP C2 C N N 112 GDP N2 N N N 113 GDP N3 N N N 114 GDP C4 C Y N 115 GDP HOB2 H N N 116 GDP HOB3 H N N 117 GDP HOA2 H N N 118 GDP "H5'" H N N 119 GDP "H5''" H N N 120 GDP "H4'" H N N 121 GDP "H3'" H N N 122 GDP "HO3'" H N N 123 GDP "H2'" H N N 124 GDP "HO2'" H N N 125 GDP "H1'" H N N 126 GDP H8 H N N 127 GDP HN1 H N N 128 GDP HN21 H N N 129 GDP HN22 H N N 130 GLN N N N N 131 GLN CA C N S 132 GLN C C N N 133 GLN O O N N 134 GLN CB C N N 135 GLN CG C N N 136 GLN CD C N N 137 GLN OE1 O N N 138 GLN NE2 N N N 139 GLN OXT O N N 140 GLN H H N N 141 GLN H2 H N N 142 GLN HA H N N 143 GLN HB2 H N N 144 GLN HB3 H N N 145 GLN HG2 H N N 146 GLN HG3 H N N 147 GLN HE21 H N N 148 GLN HE22 H N N 149 GLN HXT H N N 150 GLU N N N N 151 GLU CA C N S 152 GLU C C N N 153 GLU O O N N 154 GLU CB C N N 155 GLU CG C N N 156 GLU CD C N N 157 GLU OE1 O N N 158 GLU OE2 O N N 159 GLU OXT O N N 160 GLU H H N N 161 GLU H2 H N N 162 GLU HA H N N 163 GLU HB2 H N N 164 GLU HB3 H N N 165 GLU HG2 H N N 166 GLU HG3 H N N 167 GLU HE2 H N N 168 GLU HXT H N N 169 GLY N N N N 170 GLY CA C N N 171 GLY C C N N 172 GLY O O N N 173 GLY OXT O N N 174 GLY H H N N 175 GLY H2 H N N 176 GLY HA2 H N N 177 GLY HA3 H N N 178 GLY HXT H N N 179 HIS N N N N 180 HIS CA C N S 181 HIS C C N N 182 HIS O O N N 183 HIS CB C N N 184 HIS CG C Y N 185 HIS ND1 N Y N 186 HIS CD2 C Y N 187 HIS CE1 C Y N 188 HIS NE2 N Y N 189 HIS OXT O N N 190 HIS H H N N 191 HIS H2 H N N 192 HIS HA H N N 193 HIS HB2 H N N 194 HIS HB3 H N N 195 HIS HD1 H N N 196 HIS HD2 H N N 197 HIS HE1 H N N 198 HIS HE2 H N N 199 HIS HXT H N N 200 HOH O O N N 201 HOH H1 H N N 202 HOH H2 H N N 203 ILE N N N N 204 ILE CA C N S 205 ILE C C N N 206 ILE O O N N 207 ILE CB C N S 208 ILE CG1 C N N 209 ILE CG2 C N N 210 ILE CD1 C N N 211 ILE OXT O N N 212 ILE H H N N 213 ILE H2 H N N 214 ILE HA H N N 215 ILE HB H N N 216 ILE HG12 H N N 217 ILE HG13 H N N 218 ILE HG21 H N N 219 ILE HG22 H N N 220 ILE HG23 H N N 221 ILE HD11 H N N 222 ILE HD12 H N N 223 ILE HD13 H N N 224 ILE HXT H N N 225 LEU N N N N 226 LEU CA C N S 227 LEU C C N N 228 LEU O O N N 229 LEU CB C N N 230 LEU CG C N N 231 LEU CD1 C N N 232 LEU CD2 C N N 233 LEU OXT O N N 234 LEU H H N N 235 LEU H2 H N N 236 LEU HA H N N 237 LEU HB2 H N N 238 LEU HB3 H N N 239 LEU HG H N N 240 LEU HD11 H N N 241 LEU HD12 H N N 242 LEU HD13 H N N 243 LEU HD21 H N N 244 LEU HD22 H N N 245 LEU HD23 H N N 246 LEU HXT H N N 247 LYS N N N N 248 LYS CA C N S 249 LYS C C N N 250 LYS O O N N 251 LYS CB C N N 252 LYS CG C N N 253 LYS CD C N N 254 LYS CE C N N 255 LYS NZ N N N 256 LYS OXT O N N 257 LYS H H N N 258 LYS H2 H N N 259 LYS HA H N N 260 LYS HB2 H N N 261 LYS HB3 H N N 262 LYS HG2 H N N 263 LYS HG3 H N N 264 LYS HD2 H N N 265 LYS HD3 H N N 266 LYS HE2 H N N 267 LYS HE3 H N N 268 LYS HZ1 H N N 269 LYS HZ2 H N N 270 LYS HZ3 H N N 271 LYS HXT H N N 272 MET N N N N 273 MET CA C N S 274 MET C C N N 275 MET O O N N 276 MET CB C N N 277 MET CG C N N 278 MET SD S N N 279 MET CE C N N 280 MET OXT O N N 281 MET H H N N 282 MET H2 H N N 283 MET HA H N N 284 MET HB2 H N N 285 MET HB3 H N N 286 MET HG2 H N N 287 MET HG3 H N N 288 MET HE1 H N N 289 MET HE2 H N N 290 MET HE3 H N N 291 MET HXT H N N 292 MG MG MG N N 293 PHE N N N N 294 PHE CA C N S 295 PHE C C N N 296 PHE O O N N 297 PHE CB C N N 298 PHE CG C Y N 299 PHE CD1 C Y N 300 PHE CD2 C Y N 301 PHE CE1 C Y N 302 PHE CE2 C Y N 303 PHE CZ C Y N 304 PHE OXT O N N 305 PHE H H N N 306 PHE H2 H N N 307 PHE HA H N N 308 PHE HB2 H N N 309 PHE HB3 H N N 310 PHE HD1 H N N 311 PHE HD2 H N N 312 PHE HE1 H N N 313 PHE HE2 H N N 314 PHE HZ H N N 315 PHE HXT H N N 316 PRO N N N N 317 PRO CA C N S 318 PRO C C N N 319 PRO O O N N 320 PRO CB C N N 321 PRO CG C N N 322 PRO CD C N N 323 PRO OXT O N N 324 PRO H H N N 325 PRO HA H N N 326 PRO HB2 H N N 327 PRO HB3 H N N 328 PRO HG2 H N N 329 PRO HG3 H N N 330 PRO HD2 H N N 331 PRO HD3 H N N 332 PRO HXT H N N 333 SER N N N N 334 SER CA C N S 335 SER C C N N 336 SER O O N N 337 SER CB C N N 338 SER OG O N N 339 SER OXT O N N 340 SER H H N N 341 SER H2 H N N 342 SER HA H N N 343 SER HB2 H N N 344 SER HB3 H N N 345 SER HG H N N 346 SER HXT H N N 347 THR N N N N 348 THR CA C N S 349 THR C C N N 350 THR O O N N 351 THR CB C N R 352 THR OG1 O N N 353 THR CG2 C N N 354 THR OXT O N N 355 THR H H N N 356 THR H2 H N N 357 THR HA H N N 358 THR HB H N N 359 THR HG1 H N N 360 THR HG21 H N N 361 THR HG22 H N N 362 THR HG23 H N N 363 THR HXT H N N 364 TRP N N N N 365 TRP CA C N S 366 TRP C C N N 367 TRP O O N N 368 TRP CB C N N 369 TRP CG C Y N 370 TRP CD1 C Y N 371 TRP CD2 C Y N 372 TRP NE1 N Y N 373 TRP CE2 C Y N 374 TRP CE3 C Y N 375 TRP CZ2 C Y N 376 TRP CZ3 C Y N 377 TRP CH2 C Y N 378 TRP OXT O N N 379 TRP H H N N 380 TRP H2 H N N 381 TRP HA H N N 382 TRP HB2 H N N 383 TRP HB3 H N N 384 TRP HD1 H N N 385 TRP HE1 H N N 386 TRP HE3 H N N 387 TRP HZ2 H N N 388 TRP HZ3 H N N 389 TRP HH2 H N N 390 TRP HXT H N N 391 TYR N N N N 392 TYR CA C N S 393 TYR C C N N 394 TYR O O N N 395 TYR CB C N N 396 TYR CG C Y N 397 TYR CD1 C Y N 398 TYR CD2 C Y N 399 TYR CE1 C Y N 400 TYR CE2 C Y N 401 TYR CZ C Y N 402 TYR OH O N N 403 TYR OXT O N N 404 TYR H H N N 405 TYR H2 H N N 406 TYR HA H N N 407 TYR HB2 H N N 408 TYR HB3 H N N 409 TYR HD1 H N N 410 TYR HD2 H N N 411 TYR HE1 H N N 412 TYR HE2 H N N 413 TYR HH H N N 414 TYR HXT H N N 415 VAL N N N N 416 VAL CA C N S 417 VAL C C N N 418 VAL O O N N 419 VAL CB C N N 420 VAL CG1 C N N 421 VAL CG2 C N N 422 VAL OXT O N N 423 VAL H H N N 424 VAL H2 H N N 425 VAL HA H N N 426 VAL HB H N N 427 VAL HG11 H N N 428 VAL HG12 H N N 429 VAL HG13 H N N 430 VAL HG21 H N N 431 VAL HG22 H N N 432 VAL HG23 H N N 433 VAL HXT H N N 434 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GDP PB O1B doub N N 83 GDP PB O2B sing N N 84 GDP PB O3B sing N N 85 GDP PB O3A sing N N 86 GDP O2B HOB2 sing N N 87 GDP O3B HOB3 sing N N 88 GDP O3A PA sing N N 89 GDP PA O1A doub N N 90 GDP PA O2A sing N N 91 GDP PA "O5'" sing N N 92 GDP O2A HOA2 sing N N 93 GDP "O5'" "C5'" sing N N 94 GDP "C5'" "C4'" sing N N 95 GDP "C5'" "H5'" sing N N 96 GDP "C5'" "H5''" sing N N 97 GDP "C4'" "O4'" sing N N 98 GDP "C4'" "C3'" sing N N 99 GDP "C4'" "H4'" sing N N 100 GDP "O4'" "C1'" sing N N 101 GDP "C3'" "O3'" sing N N 102 GDP "C3'" "C2'" sing N N 103 GDP "C3'" "H3'" sing N N 104 GDP "O3'" "HO3'" sing N N 105 GDP "C2'" "O2'" sing N N 106 GDP "C2'" "C1'" sing N N 107 GDP "C2'" "H2'" sing N N 108 GDP "O2'" "HO2'" sing N N 109 GDP "C1'" N9 sing N N 110 GDP "C1'" "H1'" sing N N 111 GDP N9 C8 sing Y N 112 GDP N9 C4 sing Y N 113 GDP C8 N7 doub Y N 114 GDP C8 H8 sing N N 115 GDP N7 C5 sing Y N 116 GDP C5 C6 sing N N 117 GDP C5 C4 doub Y N 118 GDP C6 O6 doub N N 119 GDP C6 N1 sing N N 120 GDP N1 C2 sing N N 121 GDP N1 HN1 sing N N 122 GDP C2 N2 sing N N 123 GDP C2 N3 doub N N 124 GDP N2 HN21 sing N N 125 GDP N2 HN22 sing N N 126 GDP N3 C4 sing N N 127 GLN N CA sing N N 128 GLN N H sing N N 129 GLN N H2 sing N N 130 GLN CA C sing N N 131 GLN CA CB sing N N 132 GLN CA HA sing N N 133 GLN C O doub N N 134 GLN C OXT sing N N 135 GLN CB CG sing N N 136 GLN CB HB2 sing N N 137 GLN CB HB3 sing N N 138 GLN CG CD sing N N 139 GLN CG HG2 sing N N 140 GLN CG HG3 sing N N 141 GLN CD OE1 doub N N 142 GLN CD NE2 sing N N 143 GLN NE2 HE21 sing N N 144 GLN NE2 HE22 sing N N 145 GLN OXT HXT sing N N 146 GLU N CA sing N N 147 GLU N H sing N N 148 GLU N H2 sing N N 149 GLU CA C sing N N 150 GLU CA CB sing N N 151 GLU CA HA sing N N 152 GLU C O doub N N 153 GLU C OXT sing N N 154 GLU CB CG sing N N 155 GLU CB HB2 sing N N 156 GLU CB HB3 sing N N 157 GLU CG CD sing N N 158 GLU CG HG2 sing N N 159 GLU CG HG3 sing N N 160 GLU CD OE1 doub N N 161 GLU CD OE2 sing N N 162 GLU OE2 HE2 sing N N 163 GLU OXT HXT sing N N 164 GLY N CA sing N N 165 GLY N H sing N N 166 GLY N H2 sing N N 167 GLY CA C sing N N 168 GLY CA HA2 sing N N 169 GLY CA HA3 sing N N 170 GLY C O doub N N 171 GLY C OXT sing N N 172 GLY OXT HXT sing N N 173 HIS N CA sing N N 174 HIS N H sing N N 175 HIS N H2 sing N N 176 HIS CA C sing N N 177 HIS CA CB sing N N 178 HIS CA HA sing N N 179 HIS C O doub N N 180 HIS C OXT sing N N 181 HIS CB CG sing N N 182 HIS CB HB2 sing N N 183 HIS CB HB3 sing N N 184 HIS CG ND1 sing Y N 185 HIS CG CD2 doub Y N 186 HIS ND1 CE1 doub Y N 187 HIS ND1 HD1 sing N N 188 HIS CD2 NE2 sing Y N 189 HIS CD2 HD2 sing N N 190 HIS CE1 NE2 sing Y N 191 HIS CE1 HE1 sing N N 192 HIS NE2 HE2 sing N N 193 HIS OXT HXT sing N N 194 HOH O H1 sing N N 195 HOH O H2 sing N N 196 ILE N CA sing N N 197 ILE N H sing N N 198 ILE N H2 sing N N 199 ILE CA C sing N N 200 ILE CA CB sing N N 201 ILE CA HA sing N N 202 ILE C O doub N N 203 ILE C OXT sing N N 204 ILE CB CG1 sing N N 205 ILE CB CG2 sing N N 206 ILE CB HB sing N N 207 ILE CG1 CD1 sing N N 208 ILE CG1 HG12 sing N N 209 ILE CG1 HG13 sing N N 210 ILE CG2 HG21 sing N N 211 ILE CG2 HG22 sing N N 212 ILE CG2 HG23 sing N N 213 ILE CD1 HD11 sing N N 214 ILE CD1 HD12 sing N N 215 ILE CD1 HD13 sing N N 216 ILE OXT HXT sing N N 217 LEU N CA sing N N 218 LEU N H sing N N 219 LEU N H2 sing N N 220 LEU CA C sing N N 221 LEU CA CB sing N N 222 LEU CA HA sing N N 223 LEU C O doub N N 224 LEU C OXT sing N N 225 LEU CB CG sing N N 226 LEU CB HB2 sing N N 227 LEU CB HB3 sing N N 228 LEU CG CD1 sing N N 229 LEU CG CD2 sing N N 230 LEU CG HG sing N N 231 LEU CD1 HD11 sing N N 232 LEU CD1 HD12 sing N N 233 LEU CD1 HD13 sing N N 234 LEU CD2 HD21 sing N N 235 LEU CD2 HD22 sing N N 236 LEU CD2 HD23 sing N N 237 LEU OXT HXT sing N N 238 LYS N CA sing N N 239 LYS N H sing N N 240 LYS N H2 sing N N 241 LYS CA C sing N N 242 LYS CA CB sing N N 243 LYS CA HA sing N N 244 LYS C O doub N N 245 LYS C OXT sing N N 246 LYS CB CG sing N N 247 LYS CB HB2 sing N N 248 LYS CB HB3 sing N N 249 LYS CG CD sing N N 250 LYS CG HG2 sing N N 251 LYS CG HG3 sing N N 252 LYS CD CE sing N N 253 LYS CD HD2 sing N N 254 LYS CD HD3 sing N N 255 LYS CE NZ sing N N 256 LYS CE HE2 sing N N 257 LYS CE HE3 sing N N 258 LYS NZ HZ1 sing N N 259 LYS NZ HZ2 sing N N 260 LYS NZ HZ3 sing N N 261 LYS OXT HXT sing N N 262 MET N CA sing N N 263 MET N H sing N N 264 MET N H2 sing N N 265 MET CA C sing N N 266 MET CA CB sing N N 267 MET CA HA sing N N 268 MET C O doub N N 269 MET C OXT sing N N 270 MET CB CG sing N N 271 MET CB HB2 sing N N 272 MET CB HB3 sing N N 273 MET CG SD sing N N 274 MET CG HG2 sing N N 275 MET CG HG3 sing N N 276 MET SD CE sing N N 277 MET CE HE1 sing N N 278 MET CE HE2 sing N N 279 MET CE HE3 sing N N 280 MET OXT HXT sing N N 281 PHE N CA sing N N 282 PHE N H sing N N 283 PHE N H2 sing N N 284 PHE CA C sing N N 285 PHE CA CB sing N N 286 PHE CA HA sing N N 287 PHE C O doub N N 288 PHE C OXT sing N N 289 PHE CB CG sing N N 290 PHE CB HB2 sing N N 291 PHE CB HB3 sing N N 292 PHE CG CD1 doub Y N 293 PHE CG CD2 sing Y N 294 PHE CD1 CE1 sing Y N 295 PHE CD1 HD1 sing N N 296 PHE CD2 CE2 doub Y N 297 PHE CD2 HD2 sing N N 298 PHE CE1 CZ doub Y N 299 PHE CE1 HE1 sing N N 300 PHE CE2 CZ sing Y N 301 PHE CE2 HE2 sing N N 302 PHE CZ HZ sing N N 303 PHE OXT HXT sing N N 304 PRO N CA sing N N 305 PRO N CD sing N N 306 PRO N H sing N N 307 PRO CA C sing N N 308 PRO CA CB sing N N 309 PRO CA HA sing N N 310 PRO C O doub N N 311 PRO C OXT sing N N 312 PRO CB CG sing N N 313 PRO CB HB2 sing N N 314 PRO CB HB3 sing N N 315 PRO CG CD sing N N 316 PRO CG HG2 sing N N 317 PRO CG HG3 sing N N 318 PRO CD HD2 sing N N 319 PRO CD HD3 sing N N 320 PRO OXT HXT sing N N 321 SER N CA sing N N 322 SER N H sing N N 323 SER N H2 sing N N 324 SER CA C sing N N 325 SER CA CB sing N N 326 SER CA HA sing N N 327 SER C O doub N N 328 SER C OXT sing N N 329 SER CB OG sing N N 330 SER CB HB2 sing N N 331 SER CB HB3 sing N N 332 SER OG HG sing N N 333 SER OXT HXT sing N N 334 THR N CA sing N N 335 THR N H sing N N 336 THR N H2 sing N N 337 THR CA C sing N N 338 THR CA CB sing N N 339 THR CA HA sing N N 340 THR C O doub N N 341 THR C OXT sing N N 342 THR CB OG1 sing N N 343 THR CB CG2 sing N N 344 THR CB HB sing N N 345 THR OG1 HG1 sing N N 346 THR CG2 HG21 sing N N 347 THR CG2 HG22 sing N N 348 THR CG2 HG23 sing N N 349 THR OXT HXT sing N N 350 TRP N CA sing N N 351 TRP N H sing N N 352 TRP N H2 sing N N 353 TRP CA C sing N N 354 TRP CA CB sing N N 355 TRP CA HA sing N N 356 TRP C O doub N N 357 TRP C OXT sing N N 358 TRP CB CG sing N N 359 TRP CB HB2 sing N N 360 TRP CB HB3 sing N N 361 TRP CG CD1 doub Y N 362 TRP CG CD2 sing Y N 363 TRP CD1 NE1 sing Y N 364 TRP CD1 HD1 sing N N 365 TRP CD2 CE2 doub Y N 366 TRP CD2 CE3 sing Y N 367 TRP NE1 CE2 sing Y N 368 TRP NE1 HE1 sing N N 369 TRP CE2 CZ2 sing Y N 370 TRP CE3 CZ3 doub Y N 371 TRP CE3 HE3 sing N N 372 TRP CZ2 CH2 doub Y N 373 TRP CZ2 HZ2 sing N N 374 TRP CZ3 CH2 sing Y N 375 TRP CZ3 HZ3 sing N N 376 TRP CH2 HH2 sing N N 377 TRP OXT HXT sing N N 378 TYR N CA sing N N 379 TYR N H sing N N 380 TYR N H2 sing N N 381 TYR CA C sing N N 382 TYR CA CB sing N N 383 TYR CA HA sing N N 384 TYR C O doub N N 385 TYR C OXT sing N N 386 TYR CB CG sing N N 387 TYR CB HB2 sing N N 388 TYR CB HB3 sing N N 389 TYR CG CD1 doub Y N 390 TYR CG CD2 sing Y N 391 TYR CD1 CE1 sing Y N 392 TYR CD1 HD1 sing N N 393 TYR CD2 CE2 doub Y N 394 TYR CD2 HD2 sing N N 395 TYR CE1 CZ doub Y N 396 TYR CE1 HE1 sing N N 397 TYR CE2 CZ sing Y N 398 TYR CE2 HE2 sing N N 399 TYR CZ OH sing N N 400 TYR OH HH sing N N 401 TYR OXT HXT sing N N 402 VAL N CA sing N N 403 VAL N H sing N N 404 VAL N H2 sing N N 405 VAL CA C sing N N 406 VAL CA CB sing N N 407 VAL CA HA sing N N 408 VAL C O doub N N 409 VAL C OXT sing N N 410 VAL CB CG1 sing N N 411 VAL CB CG2 sing N N 412 VAL CB HB sing N N 413 VAL CG1 HG11 sing N N 414 VAL CG1 HG12 sing N N 415 VAL CG1 HG13 sing N N 416 VAL CG2 HG21 sing N N 417 VAL CG2 HG22 sing N N 418 VAL CG2 HG23 sing N N 419 VAL OXT HXT sing N N 420 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-DIPHOSPHATE" GDP 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1MH1 _pdbx_initial_refinement_model.details 'PDB ENTRY 1MH1' #