data_2J4H # _entry.id 2J4H # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.305 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2J4H PDBE EBI-29517 WWPDB D_1290029517 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1XS1 unspecified 'DCTP DEAMINASE FROM ESCHERICHIA COLI IN COMPLEX WITH DUTP' PDB 1XS4 unspecified 'DCTP DEAMINASE FROM ESCHERICHIA COLI- E138A MUTANT ENZYMEIN COMPLEX WITH DCTP' PDB 1XS6 unspecified 'DCTP DEAMINASE FROM ESCHERICHIA COLI. E138A MUTANT ENZYMEIN COMPLEX WITH DUTP' PDB 2J4Q unspecified 'CRYSTAL STRUCTURE OF A E138A ESCHERICHIA COLI DCTP DEAMINASE MUTANT ENZYME IN COMPLEX WITH DTTP' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2J4H _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2006-08-31 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Johansson, E.' 1 'Thymark, M.' 2 'Bynck, J.H.' 3 'Fanoe, M.' 4 'Larsen, S.' 5 'Willemoes, M.' 6 # _citation.id primary _citation.title 'Regulation of Dctp Deaminase from Escherichia Coli by Nonallosteric Dttp Binding to an Inactive Form of the Enzyme' _citation.journal_abbrev 'FEBS J.' _citation.journal_volume 274 _citation.page_first 4188 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1742-464X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17651436 _citation.pdbx_database_id_DOI 10.1111/J.1742-4658.2007.05945.X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Johansson, E.' 1 ? primary 'Thymark, M.' 2 ? primary 'Bynck, J.H.' 3 ? primary 'Fanoe, M.' 4 ? primary 'Larsen, S.' 5 ? primary 'Willemoes, M.' 6 ? # _cell.entry_id 2J4H _cell.length_a 62.545 _cell.length_b 62.545 _cell.length_c 342.444 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J4H _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE' 21209.186 2 3.5.4.13 YES ? ? 2 non-polymer syn 'DEOXYCYTIDINE DIPHOSPHATE' 387.177 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DCTP DEAMINASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MRLCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTFRGHTAAFIDLSGPKDEVSAALDRVMSDEIVLDEGEA FYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMVAVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSF EPLSGPAVRPYNRREDAKYRNQQGAVASRIDKD ; _entity_poly.pdbx_seq_one_letter_code_can ;MRLCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTFRGHTAAFIDLSGPKDEVSAALDRVMSDEIVLDEGEA FYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMVAVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSF EPLSGPAVRPYNRREDAKYRNQQGAVASRIDKD ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 LEU n 1 4 CYS n 1 5 ASP n 1 6 ARG n 1 7 ASP n 1 8 ILE n 1 9 GLU n 1 10 ALA n 1 11 TRP n 1 12 LEU n 1 13 ASP n 1 14 GLU n 1 15 GLY n 1 16 ARG n 1 17 LEU n 1 18 SER n 1 19 ILE n 1 20 ASN n 1 21 PRO n 1 22 ARG n 1 23 PRO n 1 24 PRO n 1 25 VAL n 1 26 GLU n 1 27 ARG n 1 28 ILE n 1 29 ASN n 1 30 GLY n 1 31 ALA n 1 32 THR n 1 33 VAL n 1 34 ASP n 1 35 VAL n 1 36 ARG n 1 37 LEU n 1 38 GLY n 1 39 ASN n 1 40 LYS n 1 41 PHE n 1 42 ARG n 1 43 THR n 1 44 PHE n 1 45 ARG n 1 46 GLY n 1 47 HIS n 1 48 THR n 1 49 ALA n 1 50 ALA n 1 51 PHE n 1 52 ILE n 1 53 ASP n 1 54 LEU n 1 55 SER n 1 56 GLY n 1 57 PRO n 1 58 LYS n 1 59 ASP n 1 60 GLU n 1 61 VAL n 1 62 SER n 1 63 ALA n 1 64 ALA n 1 65 LEU n 1 66 ASP n 1 67 ARG n 1 68 VAL n 1 69 MET n 1 70 SER n 1 71 ASP n 1 72 GLU n 1 73 ILE n 1 74 VAL n 1 75 LEU n 1 76 ASP n 1 77 GLU n 1 78 GLY n 1 79 GLU n 1 80 ALA n 1 81 PHE n 1 82 TYR n 1 83 LEU n 1 84 HIS n 1 85 PRO n 1 86 GLY n 1 87 GLU n 1 88 LEU n 1 89 ALA n 1 90 LEU n 1 91 ALA n 1 92 VAL n 1 93 THR n 1 94 LEU n 1 95 GLU n 1 96 SER n 1 97 VAL n 1 98 THR n 1 99 LEU n 1 100 PRO n 1 101 ALA n 1 102 ASP n 1 103 LEU n 1 104 VAL n 1 105 GLY n 1 106 TRP n 1 107 LEU n 1 108 ASP n 1 109 GLY n 1 110 ARG n 1 111 SER n 1 112 SER n 1 113 LEU n 1 114 ALA n 1 115 ARG n 1 116 LEU n 1 117 GLY n 1 118 LEU n 1 119 MET n 1 120 VAL n 1 121 ALA n 1 122 VAL n 1 123 THR n 1 124 ALA n 1 125 HIS n 1 126 ARG n 1 127 ILE n 1 128 ASP n 1 129 PRO n 1 130 GLY n 1 131 TRP n 1 132 SER n 1 133 GLY n 1 134 CYS n 1 135 ILE n 1 136 VAL n 1 137 LEU n 1 138 GLU n 1 139 PHE n 1 140 TYR n 1 141 ASN n 1 142 SER n 1 143 GLY n 1 144 LYS n 1 145 LEU n 1 146 PRO n 1 147 LEU n 1 148 ALA n 1 149 LEU n 1 150 ARG n 1 151 PRO n 1 152 GLY n 1 153 MET n 1 154 LEU n 1 155 ILE n 1 156 GLY n 1 157 ALA n 1 158 LEU n 1 159 SER n 1 160 PHE n 1 161 GLU n 1 162 PRO n 1 163 LEU n 1 164 SER n 1 165 GLY n 1 166 PRO n 1 167 ALA n 1 168 VAL n 1 169 ARG n 1 170 PRO n 1 171 TYR n 1 172 ASN n 1 173 ARG n 1 174 ARG n 1 175 GLU n 1 176 ASP n 1 177 ALA n 1 178 LYS n 1 179 TYR n 1 180 ARG n 1 181 ASN n 1 182 GLN n 1 183 GLN n 1 184 GLY n 1 185 ALA n 1 186 VAL n 1 187 ALA n 1 188 SER n 1 189 ARG n 1 190 ILE n 1 191 ASP n 1 192 LYS n 1 193 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DCD_ECOLI _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P28248 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2J4H A 1 ? 193 ? P28248 1 ? 193 ? 1 193 2 1 2J4H B 1 ? 193 ? P28248 1 ? 193 ? 1 193 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2J4H ALA A 121 ? UNP P28248 HIS 121 'engineered mutation' 121 1 2 2J4H ALA B 121 ? UNP P28248 HIS 121 'engineered mutation' 121 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 YYY non-polymer . 'DEOXYCYTIDINE DIPHOSPHATE' ? 'C9 H15 N3 O10 P2' 387.177 # _exptl.entry_id 2J4H _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.55 _exptl_crystal.density_percent_sol 51.39 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.8 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'VAPOUR DIFFUSION, 34% PEG400, 0.2M MAGNESIUM CHLORIDE, 0.1M HEPES PH6.8, 5MM DCTP' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2003-12-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.046 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'MAX II BEAMLINE I911-2' _diffrn_source.pdbx_synchrotron_site 'MAX II' _diffrn_source.pdbx_synchrotron_beamline I911-2 _diffrn_source.pdbx_wavelength 1.046 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2J4H _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.70 _reflns.number_obs 11131 _reflns.number_all ? _reflns.percent_possible_obs 94.2 _reflns.pdbx_Rmerge_I_obs 0.12 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 4.90 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.0 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.70 _reflns_shell.d_res_low 2.85 _reflns_shell.percent_possible_all 75.1 _reflns_shell.Rmerge_I_obs 0.47 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.30 _reflns_shell.pdbx_redundancy 5.4 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2J4H _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10539 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.70 _refine.ls_percent_reflns_obs 93.4 _refine.ls_R_factor_obs 0.228 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.225 _refine.ls_R_factor_R_free 0.273 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 563 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.914 _refine.correlation_coeff_Fo_to_Fc_free 0.879 _refine.B_iso_mean 29.14 _refine.aniso_B[1][1] 2.28000 _refine.aniso_B[2][2] 2.28000 _refine.aniso_B[3][3] -3.42000 _refine.aniso_B[1][2] 1.14000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.390 _refine.overall_SU_ML 0.256 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 12.605 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2656 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 52 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2708 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.021 ? 2764 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 2606 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.579 1.988 ? 3766 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.911 3.000 ? 6008 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.884 5.000 ? 344 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.765 22.241 ? 116 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.542 15.000 ? 438 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 22.129 15.000 ? 30 'X-RAY DIFFRACTION' ? r_chiral_restr 0.089 0.200 ? 422 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 3066 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 578 'X-RAY DIFFRACTION' ? r_nbd_refined 0.211 0.200 ? 499 'X-RAY DIFFRACTION' ? r_nbd_other 0.199 0.200 ? 2510 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other 0.087 0.200 ? 1787 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.070 0.200 ? 49 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.151 0.200 ? 48 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.224 0.200 ? 240 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.240 0.200 ? 9 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.956 1.500 ? 2160 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.061 2.000 ? 2760 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.303 3.000 ? 1179 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 2.093 4.500 ? 1006 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 A 2417 0.03 0.05 'tight positional' 1 1 'X-RAY DIFFRACTION' ? ? ? 1 A 2417 0.10 0.50 'tight thermal' 1 2 'X-RAY DIFFRACTION' ? ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.70 _refine_ls_shell.d_res_low 2.77 _refine_ls_shell.number_reflns_R_work 562 _refine_ls_shell.R_factor_R_work 0.3210 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3230 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 29 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -0.873800 _struct_ncs_oper.matrix[1][2] 0.486300 _struct_ncs_oper.matrix[1][3] 0.000542 _struct_ncs_oper.matrix[2][1] 0.486300 _struct_ncs_oper.matrix[2][2] 0.873800 _struct_ncs_oper.matrix[2][3] -0.007390 _struct_ncs_oper.matrix[3][1] -0.004067 _struct_ncs_oper.matrix[3][2] 0.006193 _struct_ncs_oper.matrix[3][3] -1.000000 _struct_ncs_oper.vector[1] 36.05000 _struct_ncs_oper.vector[2] 1.06100 _struct_ncs_oper.vector[3] 85.71000 # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 A 1 2 B 1 # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 A 1 A 5 1 1 ? ? ? ? ? ? ? ? 1 ? 2 B 1 B 5 1 1 ? ? ? ? ? ? ? ? 1 ? 1 A 7 A 8 2 1 ? ? ? ? ? ? ? ? 1 ? 2 B 7 B 8 2 1 ? ? ? ? ? ? ? ? 1 ? 1 A 10 A 13 3 1 ? ? ? ? ? ? ? ? 1 ? 2 B 10 B 13 3 1 ? ? ? ? ? ? ? ? 1 ? 1 A 15 A 19 4 1 ? ? ? ? ? ? ? ? 1 ? 2 B 15 B 19 4 1 ? ? ? ? ? ? ? ? 1 ? 1 A 21 A 35 5 1 ? ? ? ? ? ? ? ? 1 ? 2 B 21 B 35 5 1 ? ? ? ? ? ? ? ? 1 ? 1 A 37 A 39 6 1 ? ? ? ? ? ? ? ? 1 ? 2 B 37 B 39 6 1 ? ? ? ? ? ? ? ? 1 ? 1 A 41 A 55 7 1 ? ? ? ? ? ? ? ? 1 ? 2 B 41 B 55 7 1 ? ? ? ? ? ? ? ? 1 ? 1 A 57 A 64 8 1 ? ? ? ? ? ? ? ? 1 ? 2 B 57 B 64 8 1 ? ? ? ? ? ? ? ? 1 ? 1 A 67 A 76 9 1 ? ? ? ? ? ? ? ? 1 ? 2 B 67 B 76 9 1 ? ? ? ? ? ? ? ? 1 ? 1 A 78 A 105 10 1 ? ? ? ? ? ? ? ? 1 ? 2 B 78 B 105 10 1 ? ? ? ? ? ? ? ? 1 ? 1 A 107 A 124 11 1 ? ? ? ? ? ? ? ? 1 ? 2 B 107 B 124 11 1 ? ? ? ? ? ? ? ? 1 ? 1 A 126 A 171 12 1 ? ? ? ? ? ? ? ? 1 ? 2 B 126 B 171 12 1 ? ? ? ? ? ? ? ? 1 ? 1 A 194 A 194 13 1 ? ? ? ? ? ? ? ? 1 ? 2 B 194 B 194 13 1 ? ? ? ? ? ? ? ? 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 2J4H _struct.title 'Crystal structure of a H121A Escherichia coli dCTP deaminase mutant enzyme' _struct.pdbx_descriptor 'DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE (E.C.3.5.4.13)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2J4H _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'DCTP DEAMINASE, HYDROLASE, NUCLEOTIDE METABOLISM, TRIMER' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 2 ? G N N 3 ? H N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 4 ? GLU A 14 ? CYS A 4 GLU A 14 1 ? 11 HELX_P HELX_P2 2 PRO A 24 ? GLU A 26 ? PRO A 24 GLU A 26 5 ? 3 HELX_P HELX_P3 3 ARG A 45 ? ALA A 49 ? ARG A 45 ALA A 49 5 ? 5 HELX_P HELX_P4 4 PRO A 57 ? MET A 69 ? PRO A 57 MET A 69 1 ? 13 HELX_P HELX_P5 5 ARG A 110 ? ARG A 115 ? ARG A 110 ARG A 115 1 ? 6 HELX_P HELX_P6 6 CYS B 4 ? GLU B 14 ? CYS B 4 GLU B 14 1 ? 11 HELX_P HELX_P7 7 PRO B 24 ? GLU B 26 ? PRO B 24 GLU B 26 5 ? 3 HELX_P HELX_P8 8 ARG B 45 ? ALA B 49 ? ARG B 45 ALA B 49 5 ? 5 HELX_P HELX_P9 9 PRO B 57 ? MET B 69 ? PRO B 57 MET B 69 1 ? 13 HELX_P HELX_P10 10 ARG B 110 ? ARG B 115 ? ARG B 110 ARG B 115 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? D MG . MG ? ? ? 1_555 C YYY . O1A ? ? A MG 1176 A YYY 1175 1_555 ? ? ? ? ? ? ? 2.202 ? metalc2 metalc ? ? D MG . MG ? ? ? 1_555 C YYY . O1B ? ? A MG 1176 A YYY 1175 1_555 ? ? ? ? ? ? ? 2.485 ? metalc3 metalc ? ? E MG . MG ? ? ? 1_555 A VAL 122 N ? ? A MG 1177 A VAL 122 1_555 ? ? ? ? ? ? ? 2.822 ? metalc4 metalc ? ? E MG . MG ? ? ? 1_555 A ALA 121 O ? ? A MG 1177 A ALA 121 1_555 ? ? ? ? ? ? ? 2.820 ? metalc5 metalc ? ? G MG . MG ? ? ? 1_555 F YYY . O1A ? ? B MG 1174 B YYY 1173 1_555 ? ? ? ? ? ? ? 1.995 ? metalc6 metalc ? ? G MG . MG ? ? ? 1_555 F YYY . O1B ? ? B MG 1174 B YYY 1173 1_555 ? ? ? ? ? ? ? 2.473 ? metalc7 metalc ? ? H MG . MG ? ? ? 1_555 B VAL 122 N ? ? B MG 1175 B VAL 122 1_555 ? ? ? ? ? ? ? 2.813 ? metalc8 metalc ? ? H MG . MG ? ? ? 1_555 B ALA 121 O ? ? B MG 1175 B ALA 121 1_555 ? ? ? ? ? ? ? 2.431 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASN 20 A . ? ASN 20 A PRO 21 A ? PRO 21 A 1 -1.93 2 ALA 121 A . ? ALA 121 A VAL 122 A ? VAL 122 A 1 13.67 3 ASN 20 B . ? ASN 20 B PRO 21 B ? PRO 21 B 1 -5.91 4 ALA 121 B . ? ALA 121 B VAL 122 B ? VAL 122 B 1 15.28 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 5 ? AC ? 2 ? AD ? 2 ? BA ? 4 ? BB ? 5 ? BC ? 2 ? BD ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? anti-parallel AC 1 2 ? anti-parallel AD 1 2 ? anti-parallel BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BA 3 4 ? anti-parallel BB 1 2 ? anti-parallel BB 2 3 ? anti-parallel BB 3 4 ? anti-parallel BB 4 5 ? anti-parallel BC 1 2 ? anti-parallel BD 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 SER A 18 ? ASN A 20 ? SER A 18 ASN A 20 AA 2 LEU A 88 ? THR A 98 ? LEU A 88 THR A 98 AA 3 SER A 132 ? ASN A 141 ? SER A 132 ASN A 141 AA 4 LEU A 118 ? VAL A 120 ? LEU A 118 VAL A 120 AB 1 ILE A 28 ? ASN A 29 ? ILE A 28 ASN A 29 AB 2 THR A 32 ? ARG A 36 ? THR A 32 ARG A 36 AB 3 LEU A 154 ? PRO A 162 ? LEU A 154 PRO A 162 AB 4 LEU A 103 ? GLY A 109 ? LEU A 103 GLY A 109 AB 5 ARG A 126 ? ILE A 127 ? ARG A 126 ILE A 127 AC 1 LYS A 40 ? PHE A 41 ? LYS A 40 PHE A 41 AC 2 ILE A 73 ? VAL A 74 ? ILE A 73 VAL A 74 AD 1 PHE A 81 ? LEU A 83 ? PHE A 81 LEU A 83 AD 2 LEU A 147 ? LEU A 149 ? LEU A 147 LEU A 149 BA 1 SER B 18 ? ASN B 20 ? SER B 18 ASN B 20 BA 2 LEU B 88 ? THR B 98 ? LEU B 88 THR B 98 BA 3 SER B 132 ? ASN B 141 ? SER B 132 ASN B 141 BA 4 LEU B 118 ? VAL B 120 ? LEU B 118 VAL B 120 BB 1 ILE B 28 ? ASN B 29 ? ILE B 28 ASN B 29 BB 2 THR B 32 ? ARG B 36 ? THR B 32 ARG B 36 BB 3 LEU B 154 ? PRO B 162 ? LEU B 154 PRO B 162 BB 4 LEU B 103 ? GLY B 109 ? LEU B 103 GLY B 109 BB 5 ARG B 126 ? ILE B 127 ? ARG B 126 ILE B 127 BC 1 LYS B 40 ? PHE B 41 ? LYS B 40 PHE B 41 BC 2 ILE B 73 ? VAL B 74 ? ILE B 73 VAL B 74 BD 1 PHE B 81 ? LEU B 83 ? PHE B 81 LEU B 83 BD 2 LEU B 147 ? LEU B 149 ? LEU B 147 LEU B 149 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ASN A 20 ? N ASN A 20 O SER A 96 ? O SER A 96 AA 2 3 N VAL A 97 ? N VAL A 97 O GLY A 133 ? O GLY A 133 AA 3 4 N TYR A 140 ? N TYR A 140 O MET A 119 ? O MET A 119 AB 1 2 N ASN A 29 ? N ASN A 29 O THR A 32 ? O THR A 32 AB 2 3 O VAL A 35 ? O VAL A 35 N ILE A 155 ? N ILE A 155 AB 3 4 N GLU A 161 ? N GLU A 161 O VAL A 104 ? O VAL A 104 AB 4 5 N GLY A 105 ? N GLY A 105 O ILE A 127 ? O ILE A 127 AC 1 2 N PHE A 41 ? N PHE A 41 O ILE A 73 ? O ILE A 73 AD 1 2 N LEU A 83 ? N LEU A 83 O LEU A 147 ? O LEU A 147 BA 1 2 N ASN B 20 ? N ASN B 20 O SER B 96 ? O SER B 96 BA 2 3 N VAL B 97 ? N VAL B 97 O GLY B 133 ? O GLY B 133 BA 3 4 N TYR B 140 ? N TYR B 140 O MET B 119 ? O MET B 119 BB 1 2 N ASN B 29 ? N ASN B 29 O THR B 32 ? O THR B 32 BB 2 3 O VAL B 35 ? O VAL B 35 N ILE B 155 ? N ILE B 155 BB 3 4 N GLU B 161 ? N GLU B 161 O VAL B 104 ? O VAL B 104 BB 4 5 N GLY B 105 ? N GLY B 105 O ILE B 127 ? O ILE B 127 BC 1 2 N PHE B 41 ? N PHE B 41 O ILE B 73 ? O ILE B 73 BD 1 2 N LEU B 83 ? N LEU B 83 O LEU B 147 ? O LEU B 147 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 14 'BINDING SITE FOR RESIDUE YYY A1175' AC2 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE MG A1176' AC3 Software ? ? ? ? 14 'BINDING SITE FOR RESIDUE YYY B1173' AC4 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE MG B1174' AC5 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE MG A1177' AC6 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE MG B1175' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 GLY A 109 ? GLY A 109 . ? 1_555 ? 2 AC1 14 ARG A 110 ? ARG A 110 . ? 1_555 ? 3 AC1 14 SER A 111 ? SER A 111 . ? 1_555 ? 4 AC1 14 SER A 112 ? SER A 112 . ? 1_555 ? 5 AC1 14 ARG A 115 ? ARG A 115 . ? 1_555 ? 6 AC1 14 ALA A 121 ? ALA A 121 . ? 1_555 ? 7 AC1 14 ALA A 124 ? ALA A 124 . ? 1_555 ? 8 AC1 14 ARG A 126 ? ARG A 126 . ? 1_555 ? 9 AC1 14 ASP A 128 ? ASP A 128 . ? 1_555 ? 10 AC1 14 TRP A 131 ? TRP A 131 . ? 1_555 ? 11 AC1 14 ILE A 135 ? ILE A 135 . ? 1_555 ? 12 AC1 14 VAL A 136 ? VAL A 136 . ? 1_555 ? 13 AC1 14 GLU A 138 ? GLU A 138 . ? 1_555 ? 14 AC1 14 MG D . ? MG A 1176 . ? 1_555 ? 15 AC2 1 YYY C . ? YYY A 1175 . ? 1_555 ? 16 AC3 14 GLY B 109 ? GLY B 109 . ? 1_555 ? 17 AC3 14 ARG B 110 ? ARG B 110 . ? 1_555 ? 18 AC3 14 SER B 111 ? SER B 111 . ? 1_555 ? 19 AC3 14 SER B 112 ? SER B 112 . ? 1_555 ? 20 AC3 14 ARG B 115 ? ARG B 115 . ? 1_555 ? 21 AC3 14 ALA B 121 ? ALA B 121 . ? 1_555 ? 22 AC3 14 ALA B 124 ? ALA B 124 . ? 1_555 ? 23 AC3 14 ARG B 126 ? ARG B 126 . ? 1_555 ? 24 AC3 14 ASP B 128 ? ASP B 128 . ? 1_555 ? 25 AC3 14 TRP B 131 ? TRP B 131 . ? 1_555 ? 26 AC3 14 ILE B 135 ? ILE B 135 . ? 1_555 ? 27 AC3 14 VAL B 136 ? VAL B 136 . ? 1_555 ? 28 AC3 14 GLU B 138 ? GLU B 138 . ? 1_555 ? 29 AC3 14 MG G . ? MG B 1174 . ? 1_555 ? 30 AC4 1 YYY F . ? YYY B 1173 . ? 1_555 ? 31 AC5 3 ALA A 121 ? ALA A 121 . ? 1_555 ? 32 AC5 3 VAL A 122 ? VAL A 122 . ? 1_555 ? 33 AC5 3 HIS A 125 ? HIS A 125 . ? 1_555 ? 34 AC6 4 LEU B 107 ? LEU B 107 . ? 1_555 ? 35 AC6 4 ALA B 121 ? ALA B 121 . ? 1_555 ? 36 AC6 4 VAL B 122 ? VAL B 122 . ? 1_555 ? 37 AC6 4 HIS B 125 ? HIS B 125 . ? 1_555 ? # _database_PDB_matrix.entry_id 2J4H _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2J4H _atom_sites.fract_transf_matrix[1][1] 0.015988 _atom_sites.fract_transf_matrix[1][2] 0.009231 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018462 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.002920 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 CYS 4 4 4 CYS CYS A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 TRP 11 11 11 TRP TRP A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 PRO 23 23 23 PRO PRO A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 PHE 41 41 41 PHE PHE A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 HIS 47 47 47 HIS HIS A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 PHE 51 51 51 PHE PHE A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 MET 69 69 69 MET MET A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 ASP 76 76 76 ASP ASP A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 PHE 81 81 81 PHE PHE A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 HIS 84 84 84 HIS HIS A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 TRP 106 106 106 TRP TRP A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 ARG 115 115 115 ARG ARG A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 MET 119 119 119 MET MET A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 THR 123 123 123 THR THR A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 HIS 125 125 125 HIS HIS A . n A 1 126 ARG 126 126 126 ARG ARG A . n A 1 127 ILE 127 127 127 ILE ILE A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 PRO 129 129 129 PRO PRO A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 TRP 131 131 131 TRP TRP A . n A 1 132 SER 132 132 132 SER SER A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 CYS 134 134 134 CYS CYS A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 PHE 139 139 139 PHE PHE A . n A 1 140 TYR 140 140 140 TYR TYR A . n A 1 141 ASN 141 141 141 ASN ASN A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 LYS 144 144 144 LYS LYS A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 PRO 146 146 146 PRO PRO A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 ALA 148 148 148 ALA ALA A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 ARG 150 150 150 ARG ARG A . n A 1 151 PRO 151 151 151 PRO PRO A . n A 1 152 GLY 152 152 152 GLY GLY A . n A 1 153 MET 153 153 153 MET MET A . n A 1 154 LEU 154 154 154 LEU LEU A . n A 1 155 ILE 155 155 155 ILE ILE A . n A 1 156 GLY 156 156 156 GLY GLY A . n A 1 157 ALA 157 157 157 ALA ALA A . n A 1 158 LEU 158 158 158 LEU LEU A . n A 1 159 SER 159 159 159 SER SER A . n A 1 160 PHE 160 160 160 PHE PHE A . n A 1 161 GLU 161 161 161 GLU GLU A . n A 1 162 PRO 162 162 162 PRO PRO A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 SER 164 164 164 SER SER A . n A 1 165 GLY 165 165 165 GLY GLY A . n A 1 166 PRO 166 166 166 PRO PRO A . n A 1 167 ALA 167 167 167 ALA ALA A . n A 1 168 VAL 168 168 168 VAL VAL A . n A 1 169 ARG 169 169 169 ARG ARG A . n A 1 170 PRO 170 170 170 PRO PRO A . n A 1 171 TYR 171 171 171 TYR TYR A . n A 1 172 ASN 172 172 172 ASN ASN A . n A 1 173 ARG 173 173 173 ARG ARG A . n A 1 174 ARG 174 174 174 ARG ARG A . n A 1 175 GLU 175 175 ? ? ? A . n A 1 176 ASP 176 176 ? ? ? A . n A 1 177 ALA 177 177 ? ? ? A . n A 1 178 LYS 178 178 ? ? ? A . n A 1 179 TYR 179 179 ? ? ? A . n A 1 180 ARG 180 180 ? ? ? A . n A 1 181 ASN 181 181 ? ? ? A . n A 1 182 GLN 182 182 ? ? ? A . n A 1 183 GLN 183 183 ? ? ? A . n A 1 184 GLY 184 184 ? ? ? A . n A 1 185 ALA 185 185 ? ? ? A . n A 1 186 VAL 186 186 ? ? ? A . n A 1 187 ALA 187 187 ? ? ? A . n A 1 188 SER 188 188 ? ? ? A . n A 1 189 ARG 189 189 ? ? ? A . n A 1 190 ILE 190 190 ? ? ? A . n A 1 191 ASP 191 191 ? ? ? A . n A 1 192 LYS 192 192 ? ? ? A . n A 1 193 ASP 193 193 ? ? ? A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 ARG 2 2 2 ARG ARG B . n B 1 3 LEU 3 3 3 LEU LEU B . n B 1 4 CYS 4 4 4 CYS CYS B . n B 1 5 ASP 5 5 5 ASP ASP B . n B 1 6 ARG 6 6 6 ARG ARG B . n B 1 7 ASP 7 7 7 ASP ASP B . n B 1 8 ILE 8 8 8 ILE ILE B . n B 1 9 GLU 9 9 9 GLU GLU B . n B 1 10 ALA 10 10 10 ALA ALA B . n B 1 11 TRP 11 11 11 TRP TRP B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 ASP 13 13 13 ASP ASP B . n B 1 14 GLU 14 14 14 GLU GLU B . n B 1 15 GLY 15 15 15 GLY GLY B . n B 1 16 ARG 16 16 16 ARG ARG B . n B 1 17 LEU 17 17 17 LEU LEU B . n B 1 18 SER 18 18 18 SER SER B . n B 1 19 ILE 19 19 19 ILE ILE B . n B 1 20 ASN 20 20 20 ASN ASN B . n B 1 21 PRO 21 21 21 PRO PRO B . n B 1 22 ARG 22 22 22 ARG ARG B . n B 1 23 PRO 23 23 23 PRO PRO B . n B 1 24 PRO 24 24 24 PRO PRO B . n B 1 25 VAL 25 25 25 VAL VAL B . n B 1 26 GLU 26 26 26 GLU GLU B . n B 1 27 ARG 27 27 27 ARG ARG B . n B 1 28 ILE 28 28 28 ILE ILE B . n B 1 29 ASN 29 29 29 ASN ASN B . n B 1 30 GLY 30 30 30 GLY GLY B . n B 1 31 ALA 31 31 31 ALA ALA B . n B 1 32 THR 32 32 32 THR THR B . n B 1 33 VAL 33 33 33 VAL VAL B . n B 1 34 ASP 34 34 34 ASP ASP B . n B 1 35 VAL 35 35 35 VAL VAL B . n B 1 36 ARG 36 36 36 ARG ARG B . n B 1 37 LEU 37 37 37 LEU LEU B . n B 1 38 GLY 38 38 38 GLY GLY B . n B 1 39 ASN 39 39 39 ASN ASN B . n B 1 40 LYS 40 40 40 LYS LYS B . n B 1 41 PHE 41 41 41 PHE PHE B . n B 1 42 ARG 42 42 42 ARG ARG B . n B 1 43 THR 43 43 43 THR THR B . n B 1 44 PHE 44 44 44 PHE PHE B . n B 1 45 ARG 45 45 45 ARG ARG B . n B 1 46 GLY 46 46 46 GLY GLY B . n B 1 47 HIS 47 47 47 HIS HIS B . n B 1 48 THR 48 48 48 THR THR B . n B 1 49 ALA 49 49 49 ALA ALA B . n B 1 50 ALA 50 50 50 ALA ALA B . n B 1 51 PHE 51 51 51 PHE PHE B . n B 1 52 ILE 52 52 52 ILE ILE B . n B 1 53 ASP 53 53 53 ASP ASP B . n B 1 54 LEU 54 54 54 LEU LEU B . n B 1 55 SER 55 55 55 SER SER B . n B 1 56 GLY 56 56 56 GLY GLY B . n B 1 57 PRO 57 57 57 PRO PRO B . n B 1 58 LYS 58 58 58 LYS LYS B . n B 1 59 ASP 59 59 59 ASP ASP B . n B 1 60 GLU 60 60 60 GLU GLU B . n B 1 61 VAL 61 61 61 VAL VAL B . n B 1 62 SER 62 62 62 SER SER B . n B 1 63 ALA 63 63 63 ALA ALA B . n B 1 64 ALA 64 64 64 ALA ALA B . n B 1 65 LEU 65 65 65 LEU LEU B . n B 1 66 ASP 66 66 66 ASP ASP B . n B 1 67 ARG 67 67 67 ARG ARG B . n B 1 68 VAL 68 68 68 VAL VAL B . n B 1 69 MET 69 69 69 MET MET B . n B 1 70 SER 70 70 70 SER SER B . n B 1 71 ASP 71 71 71 ASP ASP B . n B 1 72 GLU 72 72 72 GLU GLU B . n B 1 73 ILE 73 73 73 ILE ILE B . n B 1 74 VAL 74 74 74 VAL VAL B . n B 1 75 LEU 75 75 75 LEU LEU B . n B 1 76 ASP 76 76 76 ASP ASP B . n B 1 77 GLU 77 77 77 GLU GLU B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 GLU 79 79 79 GLU GLU B . n B 1 80 ALA 80 80 80 ALA ALA B . n B 1 81 PHE 81 81 81 PHE PHE B . n B 1 82 TYR 82 82 82 TYR TYR B . n B 1 83 LEU 83 83 83 LEU LEU B . n B 1 84 HIS 84 84 84 HIS HIS B . n B 1 85 PRO 85 85 85 PRO PRO B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 GLU 87 87 87 GLU GLU B . n B 1 88 LEU 88 88 88 LEU LEU B . n B 1 89 ALA 89 89 89 ALA ALA B . n B 1 90 LEU 90 90 90 LEU LEU B . n B 1 91 ALA 91 91 91 ALA ALA B . n B 1 92 VAL 92 92 92 VAL VAL B . n B 1 93 THR 93 93 93 THR THR B . n B 1 94 LEU 94 94 94 LEU LEU B . n B 1 95 GLU 95 95 95 GLU GLU B . n B 1 96 SER 96 96 96 SER SER B . n B 1 97 VAL 97 97 97 VAL VAL B . n B 1 98 THR 98 98 98 THR THR B . n B 1 99 LEU 99 99 99 LEU LEU B . n B 1 100 PRO 100 100 100 PRO PRO B . n B 1 101 ALA 101 101 101 ALA ALA B . n B 1 102 ASP 102 102 102 ASP ASP B . n B 1 103 LEU 103 103 103 LEU LEU B . n B 1 104 VAL 104 104 104 VAL VAL B . n B 1 105 GLY 105 105 105 GLY GLY B . n B 1 106 TRP 106 106 106 TRP TRP B . n B 1 107 LEU 107 107 107 LEU LEU B . n B 1 108 ASP 108 108 108 ASP ASP B . n B 1 109 GLY 109 109 109 GLY GLY B . n B 1 110 ARG 110 110 110 ARG ARG B . n B 1 111 SER 111 111 111 SER SER B . n B 1 112 SER 112 112 112 SER SER B . n B 1 113 LEU 113 113 113 LEU LEU B . n B 1 114 ALA 114 114 114 ALA ALA B . n B 1 115 ARG 115 115 115 ARG ARG B . n B 1 116 LEU 116 116 116 LEU LEU B . n B 1 117 GLY 117 117 117 GLY GLY B . n B 1 118 LEU 118 118 118 LEU LEU B . n B 1 119 MET 119 119 119 MET MET B . n B 1 120 VAL 120 120 120 VAL VAL B . n B 1 121 ALA 121 121 121 ALA ALA B . n B 1 122 VAL 122 122 122 VAL VAL B . n B 1 123 THR 123 123 123 THR THR B . n B 1 124 ALA 124 124 124 ALA ALA B . n B 1 125 HIS 125 125 125 HIS HIS B . n B 1 126 ARG 126 126 126 ARG ARG B . n B 1 127 ILE 127 127 127 ILE ILE B . n B 1 128 ASP 128 128 128 ASP ASP B . n B 1 129 PRO 129 129 129 PRO PRO B . n B 1 130 GLY 130 130 130 GLY GLY B . n B 1 131 TRP 131 131 131 TRP TRP B . n B 1 132 SER 132 132 132 SER SER B . n B 1 133 GLY 133 133 133 GLY GLY B . n B 1 134 CYS 134 134 134 CYS CYS B . n B 1 135 ILE 135 135 135 ILE ILE B . n B 1 136 VAL 136 136 136 VAL VAL B . n B 1 137 LEU 137 137 137 LEU LEU B . n B 1 138 GLU 138 138 138 GLU GLU B . n B 1 139 PHE 139 139 139 PHE PHE B . n B 1 140 TYR 140 140 140 TYR TYR B . n B 1 141 ASN 141 141 141 ASN ASN B . n B 1 142 SER 142 142 142 SER SER B . n B 1 143 GLY 143 143 143 GLY GLY B . n B 1 144 LYS 144 144 144 LYS LYS B . n B 1 145 LEU 145 145 145 LEU LEU B . n B 1 146 PRO 146 146 146 PRO PRO B . n B 1 147 LEU 147 147 147 LEU LEU B . n B 1 148 ALA 148 148 148 ALA ALA B . n B 1 149 LEU 149 149 149 LEU LEU B . n B 1 150 ARG 150 150 150 ARG ARG B . n B 1 151 PRO 151 151 151 PRO PRO B . n B 1 152 GLY 152 152 152 GLY GLY B . n B 1 153 MET 153 153 153 MET MET B . n B 1 154 LEU 154 154 154 LEU LEU B . n B 1 155 ILE 155 155 155 ILE ILE B . n B 1 156 GLY 156 156 156 GLY GLY B . n B 1 157 ALA 157 157 157 ALA ALA B . n B 1 158 LEU 158 158 158 LEU LEU B . n B 1 159 SER 159 159 159 SER SER B . n B 1 160 PHE 160 160 160 PHE PHE B . n B 1 161 GLU 161 161 161 GLU GLU B . n B 1 162 PRO 162 162 162 PRO PRO B . n B 1 163 LEU 163 163 163 LEU LEU B . n B 1 164 SER 164 164 164 SER SER B . n B 1 165 GLY 165 165 165 GLY GLY B . n B 1 166 PRO 166 166 166 PRO PRO B . n B 1 167 ALA 167 167 167 ALA ALA B . n B 1 168 VAL 168 168 168 VAL VAL B . n B 1 169 ARG 169 169 169 ARG ARG B . n B 1 170 PRO 170 170 170 PRO PRO B . n B 1 171 TYR 171 171 171 TYR TYR B . n B 1 172 ASN 172 172 172 ASN ASN B . n B 1 173 ARG 173 173 ? ? ? B . n B 1 174 ARG 174 174 ? ? ? B . n B 1 175 GLU 175 175 ? ? ? B . n B 1 176 ASP 176 176 ? ? ? B . n B 1 177 ALA 177 177 ? ? ? B . n B 1 178 LYS 178 178 ? ? ? B . n B 1 179 TYR 179 179 ? ? ? B . n B 1 180 ARG 180 180 ? ? ? B . n B 1 181 ASN 181 181 ? ? ? B . n B 1 182 GLN 182 182 ? ? ? B . n B 1 183 GLN 183 183 ? ? ? B . n B 1 184 GLY 184 184 ? ? ? B . n B 1 185 ALA 185 185 ? ? ? B . n B 1 186 VAL 186 186 ? ? ? B . n B 1 187 ALA 187 187 ? ? ? B . n B 1 188 SER 188 188 ? ? ? B . n B 1 189 ARG 189 189 ? ? ? B . n B 1 190 ILE 190 190 ? ? ? B . n B 1 191 ASP 191 191 ? ? ? B . n B 1 192 LYS 192 192 ? ? ? B . n B 1 193 ASP 193 193 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 YYY 1 1175 1175 YYY YYY A . D 3 MG 1 1176 1176 MG MG A . E 3 MG 1 1177 1177 MG MG A . F 2 YYY 1 1173 1173 YYY YYY B . G 3 MG 1 1174 1174 MG MG B . H 3 MG 1 1175 1175 MG MG B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PQS trimeric 3 2 software_defined_assembly PQS trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3 A,C,D,E 2 1,4,5 B,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 12820 ? 1 MORE -72.7 ? 1 'SSA (A^2)' 23240 ? 2 'ABSA (A^2)' 12630 ? 2 MORE -73.4 ? 2 'SSA (A^2)' 22530 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5000000000 0.8660254038 0.0000000000 62.5450000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5000000000 -0.8660254038 0.0000000000 31.2725000000 0.8660254038 -0.5000000000 0.0000000000 -54.1655588797 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1A ? C YYY . ? A YYY 1175 ? 1_555 MG ? D MG . ? A MG 1176 ? 1_555 O1B ? C YYY . ? A YYY 1175 ? 1_555 72.5 ? 2 N ? A VAL 122 ? A VAL 122 ? 1_555 MG ? E MG . ? A MG 1177 ? 1_555 O ? A ALA 121 ? A ALA 121 ? 1_555 46.1 ? 3 O1A ? F YYY . ? B YYY 1173 ? 1_555 MG ? G MG . ? B MG 1174 ? 1_555 O1B ? F YYY . ? B YYY 1173 ? 1_555 74.3 ? 4 N ? B VAL 122 ? B VAL 122 ? 1_555 MG ? H MG . ? B MG 1175 ? 1_555 O ? B ALA 121 ? B ALA 121 ? 1_555 48.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-07 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-01-17 5 'Structure model' 1 4 2019-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Experimental preparation' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_source 2 5 'Structure model' exptl_crystal_grow # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 5 'Structure model' '_exptl_crystal_grow.method' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0001 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 # _pdbx_entry_details.entry_id 2J4H _pdbx_entry_details.compound_details ;ENGINEERED RESIDUE IN CHAIN A, HIS 121 TO ALA ENGINEERED RESIDUE IN CHAIN B, HIS 121 TO ALA ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 7 ? ? CG A ASP 7 ? ? OD2 A ASP 7 ? ? 124.70 118.30 6.40 0.90 N 2 1 CB A ASP 34 ? ? CG A ASP 34 ? ? OD2 A ASP 34 ? ? 124.09 118.30 5.79 0.90 N 3 1 NE A ARG 126 ? ? CZ A ARG 126 ? ? NH1 A ARG 126 ? ? 123.41 120.30 3.11 0.50 N 4 1 CB B ASP 34 ? ? CG B ASP 34 ? ? OD2 B ASP 34 ? ? 124.85 118.30 6.55 0.90 N 5 1 CB B ASP 66 ? ? CG B ASP 66 ? ? OD2 B ASP 66 ? ? 123.86 118.30 5.56 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 57 ? ? -49.79 167.27 2 1 SER A 70 ? ? -58.35 174.04 3 1 GLU A 79 ? ? -32.53 142.07 4 1 ALA A 121 ? ? -17.33 90.73 5 1 VAL A 122 ? ? 90.58 -71.21 6 1 SER B 70 ? ? -55.46 176.41 7 1 ASP B 76 ? ? -69.86 -173.51 8 1 GLU B 79 ? ? -31.75 141.68 9 1 ALA B 121 ? ? -16.46 88.60 10 1 VAL B 122 ? ? 90.90 -68.06 11 1 ARG B 169 ? ? -119.44 75.02 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 175 ? A GLU 175 2 1 Y 1 A ASP 176 ? A ASP 176 3 1 Y 1 A ALA 177 ? A ALA 177 4 1 Y 1 A LYS 178 ? A LYS 178 5 1 Y 1 A TYR 179 ? A TYR 179 6 1 Y 1 A ARG 180 ? A ARG 180 7 1 Y 1 A ASN 181 ? A ASN 181 8 1 Y 1 A GLN 182 ? A GLN 182 9 1 Y 1 A GLN 183 ? A GLN 183 10 1 Y 1 A GLY 184 ? A GLY 184 11 1 Y 1 A ALA 185 ? A ALA 185 12 1 Y 1 A VAL 186 ? A VAL 186 13 1 Y 1 A ALA 187 ? A ALA 187 14 1 Y 1 A SER 188 ? A SER 188 15 1 Y 1 A ARG 189 ? A ARG 189 16 1 Y 1 A ILE 190 ? A ILE 190 17 1 Y 1 A ASP 191 ? A ASP 191 18 1 Y 1 A LYS 192 ? A LYS 192 19 1 Y 1 A ASP 193 ? A ASP 193 20 1 Y 1 B ARG 173 ? B ARG 173 21 1 Y 1 B ARG 174 ? B ARG 174 22 1 Y 1 B GLU 175 ? B GLU 175 23 1 Y 1 B ASP 176 ? B ASP 176 24 1 Y 1 B ALA 177 ? B ALA 177 25 1 Y 1 B LYS 178 ? B LYS 178 26 1 Y 1 B TYR 179 ? B TYR 179 27 1 Y 1 B ARG 180 ? B ARG 180 28 1 Y 1 B ASN 181 ? B ASN 181 29 1 Y 1 B GLN 182 ? B GLN 182 30 1 Y 1 B GLN 183 ? B GLN 183 31 1 Y 1 B GLY 184 ? B GLY 184 32 1 Y 1 B ALA 185 ? B ALA 185 33 1 Y 1 B VAL 186 ? B VAL 186 34 1 Y 1 B ALA 187 ? B ALA 187 35 1 Y 1 B SER 188 ? B SER 188 36 1 Y 1 B ARG 189 ? B ARG 189 37 1 Y 1 B ILE 190 ? B ILE 190 38 1 Y 1 B ASP 191 ? B ASP 191 39 1 Y 1 B LYS 192 ? B LYS 192 40 1 Y 1 B ASP 193 ? B ASP 193 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'DEOXYCYTIDINE DIPHOSPHATE' YYY 3 'MAGNESIUM ION' MG #