HEADER RECEPTOR 26-SEP-06 2J67 TITLE THE TIR DOMAIN OF HUMAN TOLL-LIKE RECEPTOR 10 (TLR10) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLL LIKE RECEPTOR 10; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TIR DOMAIN, RESIDUES 622-776; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PNIC-BSA4; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS TIR, IL-1, TOLL, TLR10, MEMBRANE, RECEPTOR, INFLAMMATORY RESPONSE, KEYWDS 2 TOLL-LIKE RECEPTOR 10, INNATE IMMUNITY, IMMUNE RESPONSE, LEUCINE- KEYWDS 3 RICH REPEAT, GLYCOPROTEIN, TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR P.STENMARK,D.OGG,C.ARROWSMITH,H.BERGLUND,R.BUSAM,R.COLLINS,A.EDWARDS, AUTHOR 2 U.B.ERICSSON,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM, AUTHOR 3 B.M.HALLBERG,L.HOLMBERG SCHIAVONE,M.HOGBOM,I.JOHANSSON,T.KARLBERG, AUTHOR 4 T.KOTENYOVA,A.MAGNUSDOTTIR,M.E.NILSSON,P.NILSSON-EHLE,T.NYMAN, AUTHOR 5 C.PERSSON,J.SAGEMARK,M.SUNDSTROM,J.UPPENBERG,A.G.THORSELL,S.VAN DEN AUTHOR 6 BERG,K.WALLDEN,J.WEIGELT,M.WELIN,P.NORDLUND REVDAT 5 13-DEC-23 2J67 1 REMARK REVDAT 4 13-JUL-11 2J67 1 VERSN REVDAT 3 09-JUN-09 2J67 1 REMARK REVDAT 2 24-FEB-09 2J67 1 VERSN REVDAT 1 27-SEP-06 2J67 0 JRNL AUTH T.NYMAN,P.STENMARK,S.FLODIN,I.JOHANSSON,M.HAMMARSTROM, JRNL AUTH 2 P.NORDLUND JRNL TITL THE CRYSTAL STRUCTURE OF THE HUMAN TOLL-LIKE RECEPTOR 10 JRNL TITL 2 CYTOPLASMIC DOMAIN REVEALS A PUTATIVE SIGNALING DIMER. JRNL REF J.BIOL.CHEM. V. 283 11861 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18332149 JRNL DOI 10.1074/JBC.C800001200 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 18992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1250 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2345 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.02000 REMARK 3 B22 (A**2) : 1.53000 REMARK 3 B33 (A**2) : 0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.93000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.252 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.217 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.120 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2438 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1689 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3303 ; 1.524 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4085 ; 0.954 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 274 ; 6.933 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;34.406 ;23.516 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 414 ;15.871 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;20.217 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 339 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2651 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 548 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 478 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1593 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1137 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1183 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 85 ; 0.192 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.144 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 29 ; 0.190 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.171 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1845 ; 1.356 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2246 ; 1.714 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1448 ; 2.187 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1055 ; 2.532 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 628 A 636 REMARK 3 ORIGIN FOR THE GROUP (A): 42.5660 22.2640 61.4690 REMARK 3 T TENSOR REMARK 3 T11: 0.2050 T22: 0.0514 REMARK 3 T33: 0.0906 T12: 0.1319 REMARK 3 T13: 0.1765 T23: 0.0595 REMARK 3 L TENSOR REMARK 3 L11: 10.0875 L22: 15.2355 REMARK 3 L33: 20.0282 L12: 4.1882 REMARK 3 L13: -5.6520 L23: 12.7389 REMARK 3 S TENSOR REMARK 3 S11: 0.3307 S12: -0.0140 S13: -0.3290 REMARK 3 S21: 1.6831 S22: -0.9221 S23: 0.9663 REMARK 3 S31: 1.1585 S32: -1.0468 S33: 0.5914 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 637 A 689 REMARK 3 ORIGIN FOR THE GROUP (A): 53.8610 25.8170 54.7030 REMARK 3 T TENSOR REMARK 3 T11: 0.2384 T22: -0.0741 REMARK 3 T33: 0.0514 T12: 0.0362 REMARK 3 T13: 0.0894 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 2.3318 L22: 3.2670 REMARK 3 L33: 3.9553 L12: -0.4904 REMARK 3 L13: 1.0248 L23: -1.9113 REMARK 3 S TENSOR REMARK 3 S11: -0.0663 S12: -0.1140 S13: 0.0114 REMARK 3 S21: 0.2120 S22: 0.2906 S23: 0.0124 REMARK 3 S31: -0.6427 S32: -0.1939 S33: -0.2242 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 690 A 729 REMARK 3 ORIGIN FOR THE GROUP (A): 52.1150 16.3120 48.8540 REMARK 3 T TENSOR REMARK 3 T11: 0.1513 T22: -0.0885 REMARK 3 T33: 0.0538 T12: -0.0574 REMARK 3 T13: 0.0470 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 2.8241 L22: 3.8455 REMARK 3 L33: 5.7534 L12: -2.0021 REMARK 3 L13: 1.2773 L23: -1.7449 REMARK 3 S TENSOR REMARK 3 S11: -0.0191 S12: -0.0958 S13: -0.3387 REMARK 3 S21: -0.1440 S22: 0.2781 S23: 0.2767 REMARK 3 S31: 0.2083 S32: -0.4681 S33: -0.2589 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 730 A 744 REMARK 3 ORIGIN FOR THE GROUP (A): 57.4710 11.6480 38.8600 REMARK 3 T TENSOR REMARK 3 T11: 0.1463 T22: 0.0005 REMARK 3 T33: -0.0026 T12: -0.0325 REMARK 3 T13: 0.0465 T23: -0.0665 REMARK 3 L TENSOR REMARK 3 L11: 3.9884 L22: 9.3192 REMARK 3 L33: 7.3404 L12: -3.1750 REMARK 3 L13: -2.6209 L23: 3.8802 REMARK 3 S TENSOR REMARK 3 S11: -0.0481 S12: 0.1069 S13: -0.2943 REMARK 3 S21: -0.4593 S22: -0.0899 S23: 0.0661 REMARK 3 S31: 0.5376 S32: -0.1013 S33: 0.1379 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 745 A 776 REMARK 3 ORIGIN FOR THE GROUP (A): 46.1240 24.7950 37.3860 REMARK 3 T TENSOR REMARK 3 T11: 0.1590 T22: 0.0647 REMARK 3 T33: -0.0342 T12: -0.0469 REMARK 3 T13: 0.0408 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 6.0024 L22: 8.9923 REMARK 3 L33: 5.1366 L12: -2.2108 REMARK 3 L13: 2.1724 L23: -4.7396 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: 0.4948 S13: 0.0320 REMARK 3 S21: -0.3536 S22: 0.0931 S23: 0.2308 REMARK 3 S31: 0.0963 S32: -0.7513 S33: -0.0820 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 630 B 655 REMARK 3 ORIGIN FOR THE GROUP (A): 73.6130 11.2970 69.5960 REMARK 3 T TENSOR REMARK 3 T11: 0.0975 T22: 0.0392 REMARK 3 T33: 0.0996 T12: 0.0454 REMARK 3 T13: 0.0300 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 6.9648 L22: 6.2580 REMARK 3 L33: 5.7049 L12: 1.6522 REMARK 3 L13: 0.2764 L23: -1.7190 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: -0.2302 S13: 0.2080 REMARK 3 S21: 0.2610 S22: 0.0627 S23: 0.2081 REMARK 3 S31: -0.3234 S32: 0.3985 S33: -0.0423 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 656 B 663 REMARK 3 ORIGIN FOR THE GROUP (A): 82.9590 12.2430 76.7840 REMARK 3 T TENSOR REMARK 3 T11: 0.2704 T22: 0.4611 REMARK 3 T33: 0.1582 T12: -0.2964 REMARK 3 T13: -0.1574 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 11.9969 L12: 47.3640 REMARK 3 L13: 12.2078 L23: 18.5716 REMARK 3 S TENSOR REMARK 3 S11: 1.1079 S12: -1.6603 S13: -0.2976 REMARK 3 S21: 3.0432 S22: -2.8356 S23: -2.8426 REMARK 3 S31: -0.7602 S32: 1.0631 S33: 1.7278 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 664 B 698 REMARK 3 ORIGIN FOR THE GROUP (A): 71.9560 15.9930 61.6340 REMARK 3 T TENSOR REMARK 3 T11: 0.0567 T22: 0.0146 REMARK 3 T33: 0.0317 T12: -0.0605 REMARK 3 T13: 0.0463 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 2.3200 L22: 2.7973 REMARK 3 L33: 4.0787 L12: -2.2945 REMARK 3 L13: 1.5359 L23: -0.2474 REMARK 3 S TENSOR REMARK 3 S11: 0.0039 S12: -0.0534 S13: 0.2217 REMARK 3 S21: -0.1654 S22: -0.0395 S23: -0.0843 REMARK 3 S31: -0.3371 S32: 0.5052 S33: 0.0357 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 699 B 736 REMARK 3 ORIGIN FOR THE GROUP (A): 70.2540 3.2680 57.1150 REMARK 3 T TENSOR REMARK 3 T11: 0.2434 T22: -0.0805 REMARK 3 T33: 0.0843 T12: 0.0897 REMARK 3 T13: -0.0585 T23: -0.1463 REMARK 3 L TENSOR REMARK 3 L11: 4.0353 L22: 5.1819 REMARK 3 L33: 7.6024 L12: -1.9929 REMARK 3 L13: 3.9788 L23: -4.5085 REMARK 3 S TENSOR REMARK 3 S11: 0.4161 S12: 0.3743 S13: -0.7084 REMARK 3 S21: -0.8835 S22: -0.0817 S23: 0.3661 REMARK 3 S31: 1.0436 S32: 0.6573 S33: -0.3343 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 750 B 776 REMARK 3 ORIGIN FOR THE GROUP (A): 78.9030 -2.4950 70.6370 REMARK 3 T TENSOR REMARK 3 T11: 0.0159 T22: 0.1122 REMARK 3 T33: 0.0843 T12: 0.1766 REMARK 3 T13: 0.0709 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 9.0845 L22: 8.8952 REMARK 3 L33: 12.5830 L12: -1.7215 REMARK 3 L13: 2.6391 L23: -5.8986 REMARK 3 S TENSOR REMARK 3 S11: 0.3089 S12: -0.2004 S13: -0.9367 REMARK 3 S21: 0.0835 S22: 0.1278 S23: 0.2855 REMARK 3 S31: 0.5951 S32: 0.5015 S33: -0.4366 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2J67 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1290030066. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19993 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 23.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1FYV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NASCN, 11% PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.65000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 599 REMARK 465 HIS A 600 REMARK 465 HIS A 601 REMARK 465 HIS A 602 REMARK 465 HIS A 603 REMARK 465 HIS A 604 REMARK 465 HIS A 605 REMARK 465 SER A 606 REMARK 465 SER A 607 REMARK 465 GLY A 608 REMARK 465 VAL A 609 REMARK 465 ASP A 610 REMARK 465 LEU A 611 REMARK 465 GLY A 612 REMARK 465 THR A 613 REMARK 465 GLU A 614 REMARK 465 ASN A 615 REMARK 465 LEU A 616 REMARK 465 TYR A 617 REMARK 465 PHE A 618 REMARK 465 GLN A 619 REMARK 465 SER A 620 REMARK 465 MET A 621 REMARK 465 LYS A 622 REMARK 465 THR A 623 REMARK 465 THR A 624 REMARK 465 GLN A 625 REMARK 465 GLU A 626 REMARK 465 GLN A 627 REMARK 465 GLY A 661 REMARK 465 LEU A 717 REMARK 465 PHE A 718 REMARK 465 HIS A 719 REMARK 465 GLU A 720 REMARK 465 ASN A 721 REMARK 465 SER A 722 REMARK 465 ASP A 723 REMARK 465 MET B 599 REMARK 465 HIS B 600 REMARK 465 HIS B 601 REMARK 465 HIS B 602 REMARK 465 HIS B 603 REMARK 465 HIS B 604 REMARK 465 HIS B 605 REMARK 465 SER B 606 REMARK 465 SER B 607 REMARK 465 GLY B 608 REMARK 465 VAL B 609 REMARK 465 ASP B 610 REMARK 465 LEU B 611 REMARK 465 GLY B 612 REMARK 465 THR B 613 REMARK 465 GLU B 614 REMARK 465 ASN B 615 REMARK 465 LEU B 616 REMARK 465 TYR B 617 REMARK 465 PHE B 618 REMARK 465 GLN B 619 REMARK 465 SER B 620 REMARK 465 MET B 621 REMARK 465 LYS B 622 REMARK 465 THR B 623 REMARK 465 THR B 624 REMARK 465 GLN B 625 REMARK 465 GLU B 626 REMARK 465 GLN B 627 REMARK 465 LEU B 628 REMARK 465 LYS B 629 REMARK 465 CYS B 737 REMARK 465 ILE B 738 REMARK 465 PRO B 739 REMARK 465 THR B 740 REMARK 465 ARG B 741 REMARK 465 TYR B 742 REMARK 465 HIS B 743 REMARK 465 LYS B 744 REMARK 465 LEU B 745 REMARK 465 LYS B 746 REMARK 465 ALA B 747 REMARK 465 LEU B 748 REMARK 465 LEU B 749 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2025 O HOH A 2026 1.99 REMARK 500 O HOH A 2045 O HOH A 2052 2.19 REMARK 500 OE2 GLU B 642 O HOH B 2008 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 631 56.54 28.35 REMARK 500 ASN A 631 64.41 19.18 REMARK 500 GLU A 657 29.09 -64.03 REMARK 500 GLU B 651 -61.43 -124.90 REMARK 500 ASP B 660 70.27 -151.94 REMARK 500 LYS B 752 7.39 102.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 658 GLU A 659 123.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2050 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A2051 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A2056 DISTANCE = 6.60 ANGSTROMS DBREF 2J67 A 599 621 PDB 2J67 2J67 599 621 DBREF 2J67 A 622 776 UNP Q9BXR5 TLR10_HUMAN 622 776 DBREF 2J67 B 599 621 PDB 2J67 2J67 599 621 DBREF 2J67 B 622 776 UNP Q9BXR5 TLR10_HUMAN 622 776 SEQRES 1 A 178 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 178 GLY THR GLU ASN LEU TYR PHE GLN SER MET LYS THR THR SEQRES 3 A 178 GLN GLU GLN LEU LYS ARG ASN VAL ARG PHE HIS ALA PHE SEQRES 4 A 178 ILE SER TYR SER GLU HIS ASP SER LEU TRP VAL LYS ASN SEQRES 5 A 178 GLU LEU ILE PRO ASN LEU GLU LYS GLU ASP GLY SER ILE SEQRES 6 A 178 LEU ILE CYS LEU TYR GLU SER TYR PHE ASP PRO GLY LYS SEQRES 7 A 178 SER ILE SER GLU ASN ILE VAL SER PHE ILE GLU LYS SER SEQRES 8 A 178 TYR LYS SER ILE PHE VAL LEU SER PRO ASN PHE VAL GLN SEQRES 9 A 178 ASN GLU TRP CYS HIS TYR GLU PHE TYR PHE ALA HIS HIS SEQRES 10 A 178 ASN LEU PHE HIS GLU ASN SER ASP HIS ILE ILE LEU ILE SEQRES 11 A 178 LEU LEU GLU PRO ILE PRO PHE TYR CYS ILE PRO THR ARG SEQRES 12 A 178 TYR HIS LYS LEU LYS ALA LEU LEU GLU LYS LYS ALA TYR SEQRES 13 A 178 LEU GLU TRP PRO LYS ASP ARG ARG LYS CYS GLY LEU PHE SEQRES 14 A 178 TRP ALA ASN LEU ARG ALA ALA ILE ASN SEQRES 1 B 178 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 178 GLY THR GLU ASN LEU TYR PHE GLN SER MET LYS THR THR SEQRES 3 B 178 GLN GLU GLN LEU LYS ARG ASN VAL ARG PHE HIS ALA PHE SEQRES 4 B 178 ILE SER TYR SER GLU HIS ASP SER LEU TRP VAL LYS ASN SEQRES 5 B 178 GLU LEU ILE PRO ASN LEU GLU LYS GLU ASP GLY SER ILE SEQRES 6 B 178 LEU ILE CYS LEU TYR GLU SER TYR PHE ASP PRO GLY LYS SEQRES 7 B 178 SER ILE SER GLU ASN ILE VAL SER PHE ILE GLU LYS SER SEQRES 8 B 178 TYR LYS SER ILE PHE VAL LEU SER PRO ASN PHE VAL GLN SEQRES 9 B 178 ASN GLU TRP CYS HIS TYR GLU PHE TYR PHE ALA HIS HIS SEQRES 10 B 178 ASN LEU PHE HIS GLU ASN SER ASP HIS ILE ILE LEU ILE SEQRES 11 B 178 LEU LEU GLU PRO ILE PRO PHE TYR CYS ILE PRO THR ARG SEQRES 12 B 178 TYR HIS LYS LEU LYS ALA LEU LEU GLU LYS LYS ALA TYR SEQRES 13 B 178 LEU GLU TRP PRO LYS ASP ARG ARG LYS CYS GLY LEU PHE SEQRES 14 B 178 TRP ALA ASN LEU ARG ALA ALA ILE ASN FORMUL 3 HOH *117(H2 O) HELIX 1 1 SER A 641 HIS A 643 5 3 HELIX 2 2 ASP A 644 GLU A 651 1 8 HELIX 3 3 GLU A 651 GLU A 657 1 7 HELIX 4 4 LEU A 667 PHE A 672 1 6 HELIX 5 5 SER A 677 LYS A 688 1 12 HELIX 6 6 SER A 697 GLU A 704 1 8 HELIX 7 7 TRP A 705 HIS A 707 5 3 HELIX 8 8 TYR A 708 ALA A 713 1 6 HELIX 9 9 PRO A 734 ILE A 738 5 5 HELIX 10 10 TYR A 742 LYS A 751 1 10 HELIX 11 11 ASP A 760 ARG A 762 5 3 HELIX 12 12 LYS A 763 ASN A 776 1 14 HELIX 13 13 SER B 641 HIS B 643 5 3 HELIX 14 14 ASP B 644 GLU B 651 1 8 HELIX 15 15 GLU B 651 GLU B 659 1 9 HELIX 16 16 TYR B 668 PHE B 672 1 5 HELIX 17 17 SER B 677 LYS B 688 1 12 HELIX 18 18 SER B 697 GLU B 704 1 8 HELIX 19 19 GLU B 704 HIS B 715 1 12 HELIX 20 20 ASP B 760 ARG B 762 5 3 HELIX 21 21 LYS B 763 ASN B 776 1 14 SHEET 1 AA 5 ILE A 665 CYS A 666 0 SHEET 2 AA 5 PHE A 634 SER A 639 1 O ALA A 636 N CYS A 666 SHEET 3 AA 5 SER A 689 LEU A 696 1 N TYR A 690 O PHE A 634 SHEET 4 AA 5 ILE A 725 LEU A 729 1 O ILE A 726 N PHE A 694 SHEET 5 AA 5 LEU A 755 GLU A 756 1 O LEU A 755 N LEU A 729 SHEET 1 BA 5 ILE B 665 LEU B 667 0 SHEET 2 BA 5 PHE B 634 SER B 639 1 O ALA B 636 N CYS B 666 SHEET 3 BA 5 SER B 689 LEU B 696 1 N TYR B 690 O PHE B 634 SHEET 4 BA 5 ILE B 725 LEU B 729 1 O ILE B 726 N PHE B 694 SHEET 5 BA 5 LEU B 755 GLU B 756 1 O LEU B 755 N LEU B 729 CRYST1 66.200 43.300 71.300 90.00 101.00 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015106 0.000000 0.002936 0.00000 SCALE2 0.000000 0.023095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014288 0.00000