HEADER HYDROLASE 11-JAN-07 2JDL TITLE STRUCTURE OF C-TERMINAL REGION OF ACIDIC P2 RIBOSOMAL PROTEIN TITLE 2 COMPLEXED WITH TRICHOSANTHIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME-INACTIVATING PROTEIN ALPHA-TRICHOSANTHIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 25-270; COMPND 5 SYNONYM: RRNA N-GLYCOSIDASE, ALPHA-TCS, TRICHOSANTHIN; COMPND 6 EC: 3.2.2.22; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ACIDIC RIBOSOMAL PROTEIN P2; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHOSANTHES KIRILOWII; SOURCE 3 ORGANISM_COMMON: MONGOLIAN SNAKE-GOURD; SOURCE 4 ORGANISM_TAXID: 3677; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3D; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS RIBOSOME INACTIVIATING PROTEIN, RIBOSOMAL PROTEIN, PROTEIN SYNTHESIS KEYWDS 2 INHIBITOR, TOXIN, HYDROLASE, PLANT DEFENSE, ANTIVIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.H.TOO,A.N.MAK,G.ZHU,S.W.AU,K.B.WONG,P.C.SHAW REVDAT 4 13-DEC-23 2JDL 1 REMARK REVDAT 3 10-FEB-09 2JDL 1 JRNL REMARK REVDAT 2 30-DEC-08 2JDL 1 VERSN AUTHOR JRNL REVDAT 1 05-FEB-08 2JDL 0 JRNL AUTH P.H.TOO,M.K.MA,A.N.MAK,Y.T.WONG,C.K.TUNG,G.ZHU,S.W.AU, JRNL AUTH 2 K.B.WONG,P.C.SHAW JRNL TITL THE C-TERMINAL FRAGMENT OF THE RIBOSOMAL P PROTEIN COMPLEXED JRNL TITL 2 TO TRICHOSANTHIN REVEALS THE INTERACTION BETWEEN THE JRNL TITL 3 RIBOSOME-INACTIVATING PROTEIN AND THE RIBOSOME. JRNL REF NUCLEIC ACIDS RES. V. 37 602 2009 JRNL REFN ISSN 0305-1048 JRNL PMID 19073700 JRNL DOI 10.1093/NAR/GKN922 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 24055 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1283 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1775 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3978 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 267 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.60000 REMARK 3 B22 (A**2) : -0.46000 REMARK 3 B33 (A**2) : 1.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.79000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.285 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.225 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.878 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4044 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3706 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5487 ; 2.068 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8590 ; 1.033 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 509 ; 7.161 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;39.129 ;24.190 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 681 ;16.789 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;20.772 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 639 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4523 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 825 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 837 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3763 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1984 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2439 ; 0.094 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 237 ; 0.179 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.104 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 73 ; 0.251 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.130 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3221 ; 1.494 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4114 ; 1.805 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1736 ; 2.917 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1373 ; 4.116 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 4 C 11 2 REMARK 3 1 D 4 D 11 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 C (A): 46 ; 0.13 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 C (A): 69 ; 0.61 ; 0.50 REMARK 3 TIGHT THERMAL 1 C (A**2): 46 ; 0.30 ; 0.50 REMARK 3 MEDIUM THERMAL 1 C (A**2): 69 ; 0.53 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 5 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 141 A 143 2 REMARK 3 1 B 141 B 143 2 REMARK 3 2 A 41 A 42 2 REMARK 3 2 B 41 B 42 2 REMARK 3 3 A 124 A 124 4 REMARK 3 3 B 124 B 124 4 REMARK 3 4 A 16 A 16 4 REMARK 3 4 B 16 B 16 4 REMARK 3 5 A 246 A 246 4 REMARK 3 5 B 246 B 246 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 29 ; 0.07 ; 0.05 REMARK 3 MEDIUM POSITIONAL 2 A (A): 101 ; 0.48 ; 0.50 REMARK 3 TIGHT THERMAL 2 A (A**2): 29 ; 0.09 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 101 ; 0.67 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2JDL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1290031045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : VARIMAX HR REMARK 200 OPTICS : VARIMAX HR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24055 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 92.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1TCS REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% PEG 20000, 0.1M MES, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.98200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER C 1 REMARK 465 SER D 1 REMARK 465 ASP D 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 232 CB VAL A 232 CG2 0.151 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 CG - SD - CE ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG A 75 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 229 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG B 46 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 46 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU B 52 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG B 222 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 29 -175.70 171.63 REMARK 500 VAL A 69 23.43 49.71 REMARK 500 TYR A 142 68.37 35.64 REMARK 500 ASN A 143 100.17 -59.89 REMARK 500 THR A 158 -80.77 -123.36 REMARK 500 ASN A 205 36.48 -143.41 REMARK 500 PRO A 212 138.48 -36.15 REMARK 500 SER A 235 33.05 -144.52 REMARK 500 ASN A 236 -68.35 -156.25 REMARK 500 ARG B 29 -170.37 173.98 REMARK 500 TYR B 142 66.85 36.90 REMARK 500 THR B 158 -83.19 -117.59 REMARK 500 SER B 235 24.59 -147.57 REMARK 500 ASN B 236 -68.95 -150.63 REMARK 500 ASP C 3 -135.67 -169.15 REMARK 500 PHE C 10 -94.81 -127.01 REMARK 500 PHE D 10 -93.72 -118.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GIS RELATED DB: PDB REMARK 900 A TRICHOSANTHIN(TCS) MUTANT(E85Q) COMPLEX STRUCTURE WITH 2'-DEOXY- REMARK 900 ADENOSIN-5'- MONOPHOSPHATE REMARK 900 RELATED ID: 1GIU RELATED DB: PDB REMARK 900 A TRICHOSANTHIN(TCS) MUTANT(E85R) COMPLEX STRUCTURE WITHADENINE REMARK 900 RELATED ID: 1J4G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF THE TRICHOSANTHIN DELTA C7 REMARK 900 RELATED ID: 1MRJ RELATED DB: PDB REMARK 900 ALPHA-TRICHOSANTHIN COMPLEXED WITH ADENINE REMARK 900 RELATED ID: 1MRK RELATED DB: PDB REMARK 900 ALPHA-TRICHOSANTHIN COMPLEXED WITH FORMYCIN REMARK 900 RELATED ID: 1NLI RELATED DB: PDB REMARK 900 COMPLEX OF [E160A-E189A] TRICHOSANTHIN AND ADENINE REMARK 900 RELATED ID: 1QD2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX OF TRICHOSANTHIN WITH ADENINE, REMARK 900 OBTAINED FROM TRICHOSANTHIN COMPLEXED WITH THE DINUCLEOTIDE APG REMARK 900 RELATED ID: 1TCS RELATED DB: PDB REMARK 900 TRICHOSANTHIN COMPLEXED WITH NADPH DBREF 2JDL A 1 1 PDB 2JDL 2JDL 1 1 DBREF 2JDL A 2 247 UNP P09989 RIPT_TRIKI 25 270 DBREF 2JDL B 1 1 PDB 2JDL 2JDL 1 1 DBREF 2JDL B 2 247 UNP P09989 RIPT_TRIKI 25 270 DBREF 2JDL C 1 11 PDB 2JDL 2JDL 1 11 DBREF 2JDL D 1 11 PDB 2JDL 2JDL 1 11 SEQRES 1 A 247 MET VAL SER PHE ARG LEU SER GLY ALA THR SER SER SER SEQRES 2 A 247 TYR GLY VAL PHE ILE SER ASN LEU ARG LYS ALA LEU PRO SEQRES 3 A 247 ASN GLU ARG LYS LEU TYR ASP ILE PRO LEU LEU ARG SER SEQRES 4 A 247 SER LEU PRO GLY SER GLN ARG TYR ALA LEU ILE HIS LEU SEQRES 5 A 247 THR ASN TYR ALA ASP GLU THR ILE SER VAL ALA ILE ASP SEQRES 6 A 247 VAL THR ASN VAL TYR ILE MET GLY TYR ARG ALA GLY ASP SEQRES 7 A 247 THR SER TYR PHE PHE ASN GLU ALA SER ALA THR GLU ALA SEQRES 8 A 247 ALA LYS TYR VAL PHE LYS ASP ALA MET ARG LYS VAL THR SEQRES 9 A 247 LEU PRO TYR SER GLY ASN TYR GLU ARG LEU GLN THR ALA SEQRES 10 A 247 ALA GLY LYS ILE ARG GLU ASN ILE PRO LEU GLY LEU PRO SEQRES 11 A 247 ALA LEU ASP SER ALA ILE THR THR LEU PHE TYR TYR ASN SEQRES 12 A 247 ALA ASN SER ALA ALA SER ALA LEU MET VAL LEU ILE GLN SEQRES 13 A 247 SER THR SER GLU ALA ALA ARG TYR LYS PHE ILE GLU GLN SEQRES 14 A 247 GLN ILE GLY LYS ARG VAL ASP LYS THR PHE LEU PRO SER SEQRES 15 A 247 LEU ALA ILE ILE SER LEU GLU ASN SER TRP SER ALA LEU SEQRES 16 A 247 SER LYS GLN ILE GLN ILE ALA SER THR ASN ASN GLY GLN SEQRES 17 A 247 PHE GLU SER PRO VAL VAL LEU ILE ASN ALA GLN ASN GLN SEQRES 18 A 247 ARG VAL THR ILE THR ASN VAL ASP ALA GLY VAL VAL THR SEQRES 19 A 247 SER ASN ILE ALA LEU LEU LEU ASN ARG ASN ASN MET ALA SEQRES 1 B 247 MET VAL SER PHE ARG LEU SER GLY ALA THR SER SER SER SEQRES 2 B 247 TYR GLY VAL PHE ILE SER ASN LEU ARG LYS ALA LEU PRO SEQRES 3 B 247 ASN GLU ARG LYS LEU TYR ASP ILE PRO LEU LEU ARG SER SEQRES 4 B 247 SER LEU PRO GLY SER GLN ARG TYR ALA LEU ILE HIS LEU SEQRES 5 B 247 THR ASN TYR ALA ASP GLU THR ILE SER VAL ALA ILE ASP SEQRES 6 B 247 VAL THR ASN VAL TYR ILE MET GLY TYR ARG ALA GLY ASP SEQRES 7 B 247 THR SER TYR PHE PHE ASN GLU ALA SER ALA THR GLU ALA SEQRES 8 B 247 ALA LYS TYR VAL PHE LYS ASP ALA MET ARG LYS VAL THR SEQRES 9 B 247 LEU PRO TYR SER GLY ASN TYR GLU ARG LEU GLN THR ALA SEQRES 10 B 247 ALA GLY LYS ILE ARG GLU ASN ILE PRO LEU GLY LEU PRO SEQRES 11 B 247 ALA LEU ASP SER ALA ILE THR THR LEU PHE TYR TYR ASN SEQRES 12 B 247 ALA ASN SER ALA ALA SER ALA LEU MET VAL LEU ILE GLN SEQRES 13 B 247 SER THR SER GLU ALA ALA ARG TYR LYS PHE ILE GLU GLN SEQRES 14 B 247 GLN ILE GLY LYS ARG VAL ASP LYS THR PHE LEU PRO SER SEQRES 15 B 247 LEU ALA ILE ILE SER LEU GLU ASN SER TRP SER ALA LEU SEQRES 16 B 247 SER LYS GLN ILE GLN ILE ALA SER THR ASN ASN GLY GLN SEQRES 17 B 247 PHE GLU SER PRO VAL VAL LEU ILE ASN ALA GLN ASN GLN SEQRES 18 B 247 ARG VAL THR ILE THR ASN VAL ASP ALA GLY VAL VAL THR SEQRES 19 B 247 SER ASN ILE ALA LEU LEU LEU ASN ARG ASN ASN MET ALA SEQRES 1 C 11 SER ASP ASP ASP MET GLY PHE GLY LEU PHE ASP SEQRES 1 D 11 SER ASP ASP ASP MET GLY PHE GLY LEU PHE ASP FORMUL 5 HOH *267(H2 O) HELIX 1 1 THR A 10 ALA A 24 1 15 HELIX 2 2 PRO A 42 GLN A 45 5 4 HELIX 3 3 GLU A 85 ALA A 92 1 8 HELIX 4 4 ASN A 110 GLY A 119 1 10 HELIX 5 5 ILE A 121 ILE A 125 5 5 HELIX 6 6 GLY A 128 TYR A 141 1 14 HELIX 7 7 SER A 146 THR A 158 1 13 HELIX 8 8 THR A 158 TYR A 164 1 7 HELIX 9 9 TYR A 164 LYS A 173 1 10 HELIX 10 10 SER A 182 SER A 191 1 10 HELIX 11 11 SER A 191 SER A 203 1 13 HELIX 12 12 ALA A 230 SER A 235 1 6 HELIX 13 13 ASN A 242 MET A 246 5 5 HELIX 14 14 THR B 10 LYS B 23 1 14 HELIX 15 15 GLU B 85 ALA B 92 1 8 HELIX 16 16 ASN B 110 GLY B 119 1 10 HELIX 17 17 ILE B 121 ILE B 125 5 5 HELIX 18 18 GLY B 128 TYR B 141 1 14 HELIX 19 19 SER B 146 THR B 158 1 13 HELIX 20 20 THR B 158 TYR B 164 1 7 HELIX 21 21 TYR B 164 ARG B 174 1 11 HELIX 22 22 SER B 182 THR B 204 1 23 HELIX 23 23 ALA B 230 ASN B 236 1 7 HELIX 24 24 ASN B 242 MET B 246 5 5 SHEET 1 AA 6 VAL A 2 ARG A 5 0 SHEET 2 AA 6 TYR A 47 THR A 53 1 O LEU A 49 N VAL A 2 SHEET 3 AA 6 THR A 59 ASP A 65 -1 O ILE A 60 N LEU A 52 SHEET 4 AA 6 ILE A 71 ALA A 76 -1 N MET A 72 O ALA A 63 SHEET 5 AA 6 THR A 79 PHE A 82 -1 O THR A 79 N ALA A 76 SHEET 6 AA 6 ARG A 101 THR A 104 1 O ARG A 101 N SER A 80 SHEET 1 AB 2 ASN A 27 LEU A 31 0 SHEET 2 AB 2 ILE A 34 LEU A 37 -1 O ILE A 34 N LEU A 31 SHEET 1 AC 2 GLN A 208 ILE A 216 0 SHEET 2 AC 2 ARG A 222 ASN A 227 -1 O VAL A 223 N LEU A 215 SHEET 1 BA 6 SER B 3 ARG B 5 0 SHEET 2 BA 6 TYR B 47 THR B 53 1 O HIS B 51 N PHE B 4 SHEET 3 BA 6 THR B 59 ASP B 65 -1 O ILE B 60 N LEU B 52 SHEET 4 BA 6 ILE B 71 ALA B 76 -1 N MET B 72 O ALA B 63 SHEET 5 BA 6 THR B 79 PHE B 82 -1 O THR B 79 N ALA B 76 SHEET 6 BA 6 ARG B 101 THR B 104 1 O ARG B 101 N SER B 80 SHEET 1 BB 2 ASN B 27 LEU B 31 0 SHEET 2 BB 2 ILE B 34 LEU B 37 -1 O ILE B 34 N LEU B 31 SHEET 1 BC 2 GLN B 208 ILE B 216 0 SHEET 2 BC 2 ARG B 222 ASN B 227 -1 O VAL B 223 N LEU B 215 CRYST1 62.589 43.964 92.235 90.00 92.87 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015977 0.000000 0.000801 0.00000 SCALE2 0.000000 0.022746 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010855 0.00000