data_2JF4 # _entry.id 2JF4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2JF4 PDBE EBI-31240 WWPDB D_1290031240 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2JF4 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-01-25 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gibson, R.P.' 1 'Gloster, T.M.' 2 'Roberts, S.' 3 'Warren, R.A.J.' 4 'Storch De Gracia, I.' 5 'Garcia, A.' 6 'Chiara, J.L.' 7 'Davies, G.J.' 8 # _citation.id primary _citation.title 'Molecular Basis for Trehalase Inhibition Revealed by the Structure of Trehalase in Complex with Potent Inhibitors.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 46 _citation.page_first 4115 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17455176 _citation.pdbx_database_id_DOI 10.1002/ANIE.200604825 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Gibson, R.P.' 1 primary 'Gloster, T.M.' 2 primary 'Roberts, S.' 3 primary 'Warren, R.A.J.' 4 primary 'Storch De Gracia, I.' 5 primary 'Garcia, A.' 6 primary 'Chiara, J.L.' 7 primary 'Davies, G.J.' 8 # _cell.entry_id 2JF4 _cell.length_a 49.399 _cell.length_b 102.696 _cell.length_c 103.174 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JF4 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PERIPLASMIC TREHALASE' 61183.055 1 3.2.1.28 ? 'RESIDUES 31-565' ? 2 non-polymer syn '(1S,2S,3R,6S)-4-(HYDROXYMETHYL)-6-{[(1S,2S,3S,4R,5R)-2,3,4-TRIHYDROXY-5-(HYDROXYMETHYL)CYCLOHEXYL]AMINO}CYCLOHEX-4-ENE-1,2,3-TRIOL' 335.350 1 ? ? ? ? 3 water nat water 18.015 296 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TREHALASE, ALPHA-ALPHA-TREHALASE, ALPHA-ALPHA-TREHALOSE GLUCOHYDROLASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;EETPVTPQPPDILLGPLFNDVQNAKLFPDQKTFADAVPNSDPL(MSE)ILADYR(MSE)QQNQSGFDLRHFVNVNFTLPK EGEKYVPPEGQSLREHIDGLWPVLTRSTENTEKWDSLLPLPEPYVVPGGRFREVYYWDSYFT(MSE)LGLAESGHWDKVA D(MSE)VANFAHEIDTYGHIPNGNRSYYLSRSQPPFFAL(MSE)VELLAQHEGDAALKQYLPQ(MSE)QKEYAYW(MSE) DGVENLQAGQQEKRVVKLQDGTLLNRYWDDRDTPRPESWVEDIATAKSNPNRPATEIYRDLRSAAASGWDFSSRW(MSE) DNPQQLNTLRTTSIVPVDLNSL(MSE)FK(MSE)EKILARASKAAGDNA(MSE)ANQYETLANARQKGIEKYLWNDQQGW YADYDLKSHKVRNQLTAAALFPLYVNAAAKDRANK(MSE)ATATKTHLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATE GLQNYGQKEVA(MSE)DISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLK(MSE)LDLICP KEQPCDNVPATRPTVKSATTQPSTKEAQPTP ; _entity_poly.pdbx_seq_one_letter_code_can ;EETPVTPQPPDILLGPLFNDVQNAKLFPDQKTFADAVPNSDPLMILADYRMQQNQSGFDLRHFVNVNFTLPKEGEKYVPP EGQSLREHIDGLWPVLTRSTENTEKWDSLLPLPEPYVVPGGRFREVYYWDSYFTMLGLAESGHWDKVADMVANFAHEIDT YGHIPNGNRSYYLSRSQPPFFALMVELLAQHEGDAALKQYLPQMQKEYAYWMDGVENLQAGQQEKRVVKLQDGTLLNRYW DDRDTPRPESWVEDIATAKSNPNRPATEIYRDLRSAAASGWDFSSRWMDNPQQLNTLRTTSIVPVDLNSLMFKMEKILAR ASKAAGDNAMANQYETLANARQKGIEKYLWNDQQGWYADYDLKSHKVRNQLTAAALFPLYVNAAAKDRANKMATATKTHL LQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQKEVAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGGGG EYPLQDGFGWTNGVTLKMLDLICPKEQPCDNVPATRPTVKSATTQPSTKEAQPTP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 GLU n 1 3 THR n 1 4 PRO n 1 5 VAL n 1 6 THR n 1 7 PRO n 1 8 GLN n 1 9 PRO n 1 10 PRO n 1 11 ASP n 1 12 ILE n 1 13 LEU n 1 14 LEU n 1 15 GLY n 1 16 PRO n 1 17 LEU n 1 18 PHE n 1 19 ASN n 1 20 ASP n 1 21 VAL n 1 22 GLN n 1 23 ASN n 1 24 ALA n 1 25 LYS n 1 26 LEU n 1 27 PHE n 1 28 PRO n 1 29 ASP n 1 30 GLN n 1 31 LYS n 1 32 THR n 1 33 PHE n 1 34 ALA n 1 35 ASP n 1 36 ALA n 1 37 VAL n 1 38 PRO n 1 39 ASN n 1 40 SER n 1 41 ASP n 1 42 PRO n 1 43 LEU n 1 44 MSE n 1 45 ILE n 1 46 LEU n 1 47 ALA n 1 48 ASP n 1 49 TYR n 1 50 ARG n 1 51 MSE n 1 52 GLN n 1 53 GLN n 1 54 ASN n 1 55 GLN n 1 56 SER n 1 57 GLY n 1 58 PHE n 1 59 ASP n 1 60 LEU n 1 61 ARG n 1 62 HIS n 1 63 PHE n 1 64 VAL n 1 65 ASN n 1 66 VAL n 1 67 ASN n 1 68 PHE n 1 69 THR n 1 70 LEU n 1 71 PRO n 1 72 LYS n 1 73 GLU n 1 74 GLY n 1 75 GLU n 1 76 LYS n 1 77 TYR n 1 78 VAL n 1 79 PRO n 1 80 PRO n 1 81 GLU n 1 82 GLY n 1 83 GLN n 1 84 SER n 1 85 LEU n 1 86 ARG n 1 87 GLU n 1 88 HIS n 1 89 ILE n 1 90 ASP n 1 91 GLY n 1 92 LEU n 1 93 TRP n 1 94 PRO n 1 95 VAL n 1 96 LEU n 1 97 THR n 1 98 ARG n 1 99 SER n 1 100 THR n 1 101 GLU n 1 102 ASN n 1 103 THR n 1 104 GLU n 1 105 LYS n 1 106 TRP n 1 107 ASP n 1 108 SER n 1 109 LEU n 1 110 LEU n 1 111 PRO n 1 112 LEU n 1 113 PRO n 1 114 GLU n 1 115 PRO n 1 116 TYR n 1 117 VAL n 1 118 VAL n 1 119 PRO n 1 120 GLY n 1 121 GLY n 1 122 ARG n 1 123 PHE n 1 124 ARG n 1 125 GLU n 1 126 VAL n 1 127 TYR n 1 128 TYR n 1 129 TRP n 1 130 ASP n 1 131 SER n 1 132 TYR n 1 133 PHE n 1 134 THR n 1 135 MSE n 1 136 LEU n 1 137 GLY n 1 138 LEU n 1 139 ALA n 1 140 GLU n 1 141 SER n 1 142 GLY n 1 143 HIS n 1 144 TRP n 1 145 ASP n 1 146 LYS n 1 147 VAL n 1 148 ALA n 1 149 ASP n 1 150 MSE n 1 151 VAL n 1 152 ALA n 1 153 ASN n 1 154 PHE n 1 155 ALA n 1 156 HIS n 1 157 GLU n 1 158 ILE n 1 159 ASP n 1 160 THR n 1 161 TYR n 1 162 GLY n 1 163 HIS n 1 164 ILE n 1 165 PRO n 1 166 ASN n 1 167 GLY n 1 168 ASN n 1 169 ARG n 1 170 SER n 1 171 TYR n 1 172 TYR n 1 173 LEU n 1 174 SER n 1 175 ARG n 1 176 SER n 1 177 GLN n 1 178 PRO n 1 179 PRO n 1 180 PHE n 1 181 PHE n 1 182 ALA n 1 183 LEU n 1 184 MSE n 1 185 VAL n 1 186 GLU n 1 187 LEU n 1 188 LEU n 1 189 ALA n 1 190 GLN n 1 191 HIS n 1 192 GLU n 1 193 GLY n 1 194 ASP n 1 195 ALA n 1 196 ALA n 1 197 LEU n 1 198 LYS n 1 199 GLN n 1 200 TYR n 1 201 LEU n 1 202 PRO n 1 203 GLN n 1 204 MSE n 1 205 GLN n 1 206 LYS n 1 207 GLU n 1 208 TYR n 1 209 ALA n 1 210 TYR n 1 211 TRP n 1 212 MSE n 1 213 ASP n 1 214 GLY n 1 215 VAL n 1 216 GLU n 1 217 ASN n 1 218 LEU n 1 219 GLN n 1 220 ALA n 1 221 GLY n 1 222 GLN n 1 223 GLN n 1 224 GLU n 1 225 LYS n 1 226 ARG n 1 227 VAL n 1 228 VAL n 1 229 LYS n 1 230 LEU n 1 231 GLN n 1 232 ASP n 1 233 GLY n 1 234 THR n 1 235 LEU n 1 236 LEU n 1 237 ASN n 1 238 ARG n 1 239 TYR n 1 240 TRP n 1 241 ASP n 1 242 ASP n 1 243 ARG n 1 244 ASP n 1 245 THR n 1 246 PRO n 1 247 ARG n 1 248 PRO n 1 249 GLU n 1 250 SER n 1 251 TRP n 1 252 VAL n 1 253 GLU n 1 254 ASP n 1 255 ILE n 1 256 ALA n 1 257 THR n 1 258 ALA n 1 259 LYS n 1 260 SER n 1 261 ASN n 1 262 PRO n 1 263 ASN n 1 264 ARG n 1 265 PRO n 1 266 ALA n 1 267 THR n 1 268 GLU n 1 269 ILE n 1 270 TYR n 1 271 ARG n 1 272 ASP n 1 273 LEU n 1 274 ARG n 1 275 SER n 1 276 ALA n 1 277 ALA n 1 278 ALA n 1 279 SER n 1 280 GLY n 1 281 TRP n 1 282 ASP n 1 283 PHE n 1 284 SER n 1 285 SER n 1 286 ARG n 1 287 TRP n 1 288 MSE n 1 289 ASP n 1 290 ASN n 1 291 PRO n 1 292 GLN n 1 293 GLN n 1 294 LEU n 1 295 ASN n 1 296 THR n 1 297 LEU n 1 298 ARG n 1 299 THR n 1 300 THR n 1 301 SER n 1 302 ILE n 1 303 VAL n 1 304 PRO n 1 305 VAL n 1 306 ASP n 1 307 LEU n 1 308 ASN n 1 309 SER n 1 310 LEU n 1 311 MSE n 1 312 PHE n 1 313 LYS n 1 314 MSE n 1 315 GLU n 1 316 LYS n 1 317 ILE n 1 318 LEU n 1 319 ALA n 1 320 ARG n 1 321 ALA n 1 322 SER n 1 323 LYS n 1 324 ALA n 1 325 ALA n 1 326 GLY n 1 327 ASP n 1 328 ASN n 1 329 ALA n 1 330 MSE n 1 331 ALA n 1 332 ASN n 1 333 GLN n 1 334 TYR n 1 335 GLU n 1 336 THR n 1 337 LEU n 1 338 ALA n 1 339 ASN n 1 340 ALA n 1 341 ARG n 1 342 GLN n 1 343 LYS n 1 344 GLY n 1 345 ILE n 1 346 GLU n 1 347 LYS n 1 348 TYR n 1 349 LEU n 1 350 TRP n 1 351 ASN n 1 352 ASP n 1 353 GLN n 1 354 GLN n 1 355 GLY n 1 356 TRP n 1 357 TYR n 1 358 ALA n 1 359 ASP n 1 360 TYR n 1 361 ASP n 1 362 LEU n 1 363 LYS n 1 364 SER n 1 365 HIS n 1 366 LYS n 1 367 VAL n 1 368 ARG n 1 369 ASN n 1 370 GLN n 1 371 LEU n 1 372 THR n 1 373 ALA n 1 374 ALA n 1 375 ALA n 1 376 LEU n 1 377 PHE n 1 378 PRO n 1 379 LEU n 1 380 TYR n 1 381 VAL n 1 382 ASN n 1 383 ALA n 1 384 ALA n 1 385 ALA n 1 386 LYS n 1 387 ASP n 1 388 ARG n 1 389 ALA n 1 390 ASN n 1 391 LYS n 1 392 MSE n 1 393 ALA n 1 394 THR n 1 395 ALA n 1 396 THR n 1 397 LYS n 1 398 THR n 1 399 HIS n 1 400 LEU n 1 401 LEU n 1 402 GLN n 1 403 PRO n 1 404 GLY n 1 405 GLY n 1 406 LEU n 1 407 ASN n 1 408 THR n 1 409 THR n 1 410 SER n 1 411 VAL n 1 412 LYS n 1 413 SER n 1 414 GLY n 1 415 GLN n 1 416 GLN n 1 417 TRP n 1 418 ASP n 1 419 ALA n 1 420 PRO n 1 421 ASN n 1 422 GLY n 1 423 TRP n 1 424 ALA n 1 425 PRO n 1 426 LEU n 1 427 GLN n 1 428 TRP n 1 429 VAL n 1 430 ALA n 1 431 THR n 1 432 GLU n 1 433 GLY n 1 434 LEU n 1 435 GLN n 1 436 ASN n 1 437 TYR n 1 438 GLY n 1 439 GLN n 1 440 LYS n 1 441 GLU n 1 442 VAL n 1 443 ALA n 1 444 MSE n 1 445 ASP n 1 446 ILE n 1 447 SER n 1 448 TRP n 1 449 HIS n 1 450 PHE n 1 451 LEU n 1 452 THR n 1 453 ASN n 1 454 VAL n 1 455 GLN n 1 456 HIS n 1 457 THR n 1 458 TYR n 1 459 ASP n 1 460 ARG n 1 461 GLU n 1 462 LYS n 1 463 LYS n 1 464 LEU n 1 465 VAL n 1 466 GLU n 1 467 LYS n 1 468 TYR n 1 469 ASP n 1 470 VAL n 1 471 SER n 1 472 THR n 1 473 THR n 1 474 GLY n 1 475 THR n 1 476 GLY n 1 477 GLY n 1 478 GLY n 1 479 GLY n 1 480 GLY n 1 481 GLU n 1 482 TYR n 1 483 PRO n 1 484 LEU n 1 485 GLN n 1 486 ASP n 1 487 GLY n 1 488 PHE n 1 489 GLY n 1 490 TRP n 1 491 THR n 1 492 ASN n 1 493 GLY n 1 494 VAL n 1 495 THR n 1 496 LEU n 1 497 LYS n 1 498 MSE n 1 499 LEU n 1 500 ASP n 1 501 LEU n 1 502 ILE n 1 503 CYS n 1 504 PRO n 1 505 LYS n 1 506 GLU n 1 507 GLN n 1 508 PRO n 1 509 CYS n 1 510 ASP n 1 511 ASN n 1 512 VAL n 1 513 PRO n 1 514 ALA n 1 515 THR n 1 516 ARG n 1 517 PRO n 1 518 THR n 1 519 VAL n 1 520 LYS n 1 521 SER n 1 522 ALA n 1 523 THR n 1 524 THR n 1 525 GLN n 1 526 PRO n 1 527 SER n 1 528 THR n 1 529 LYS n 1 530 GLU n 1 531 ALA n 1 532 GLN n 1 533 PRO n 1 534 THR n 1 535 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TREA_ECOLI _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P13482 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JF4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 535 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P13482 _struct_ref_seq.db_align_beg 31 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 565 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 31 _struct_ref_seq.pdbx_auth_seq_align_end 565 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 VDM non-polymer . '(1S,2S,3R,6S)-4-(HYDROXYMETHYL)-6-{[(1S,2S,3S,4R,5R)-2,3,4-TRIHYDROXY-5-(HYDROXYMETHYL)CYCLOHEXYL]AMINO}CYCLOHEX-4-ENE-1,2,3-TRIOL' VALIDOXYLAMINE 'C14 H25 N O8' 335.350 # _exptl.entry_id 2JF4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.2 _exptl_crystal.density_percent_sol 43.2 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '15 MG/ML PROTEIN. 25% PEG3350 AND 0.1 M BIS-TRIS HCL, PH 6.5.' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details 'TOROIDAL MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL, SI(111) OR SI(311)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97931 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 0.97931 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2JF4 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 2.200 _reflns.number_obs 27378 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.11000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.7000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.000 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.32 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.40000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.700 _reflns_shell.pdbx_redundancy 6.10 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2JF4 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 25985 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.57 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.166 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.163 _refine.ls_R_factor_R_free 0.214 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1384 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.920 _refine.B_iso_mean 16.23 _refine.aniso_B[1][1] -0.79000 _refine.aniso_B[2][2] 1.29000 _refine.aniso_B[3][3] -0.50000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. NO ELECTRON DENSITY CAN BE OBSERVED FOR THE CHAIN BETWEEN 101 AND 113.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.259 _refine.pdbx_overall_ESU_R_Free 0.196 _refine.overall_SU_ML 0.122 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.672 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3979 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 23 _refine_hist.number_atoms_solvent 296 _refine_hist.number_atoms_total 4298 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 28.57 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 4161 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.290 1.946 ? 5682 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.080 5.000 ? 512 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.102 24.623 ? 212 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.724 15.000 ? 657 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.517 15.000 ? 25 'X-RAY DIFFRACTION' ? r_chiral_restr 0.088 0.200 ? 599 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 3273 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.194 0.200 ? 1892 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.301 0.200 ? 2841 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.129 0.200 ? 258 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.224 0.200 ? 19 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.135 0.200 ? 17 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.144 1.500 ? 2590 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.297 2.000 ? 4050 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.134 3.000 ? 1846 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.130 4.500 ? 1625 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.26 _refine_ls_shell.number_reflns_R_work 1891 _refine_ls_shell.R_factor_R_work 0.1730 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2540 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 98 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2JF4 _struct.title 'Family 37 trehalase from Escherichia coli in complex with validoxylamine' _struct.pdbx_descriptor 'PERIPLASMIC TREHALASE (E.C.3.2.1.28)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JF4 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'FAMILY 37, HYDROLASE, INHIBITOR, TREHALASE, GLYCOSIDE HYDROLASE, PERIPLASMIC, GLYCOSIDASE, VALIDOXYLAMINE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 9 ? LEU A 14 ? PRO A 39 LEU A 44 1 ? 6 HELX_P HELX_P2 2 LEU A 14 ? LYS A 25 ? LEU A 44 LYS A 55 1 ? 12 HELX_P HELX_P3 3 GLN A 30 ? ASP A 35 ? GLN A 60 ASP A 65 1 ? 6 HELX_P HELX_P4 4 ASP A 41 ? GLN A 53 ? ASP A 71 GLN A 83 1 ? 13 HELX_P HELX_P5 5 ASP A 59 ? ASN A 67 ? ASP A 89 ASN A 97 1 ? 9 HELX_P HELX_P6 6 SER A 84 ? LEU A 96 ? SER A 114 LEU A 126 1 ? 13 HELX_P HELX_P7 7 TYR A 127 ? SER A 141 ? TYR A 157 SER A 171 1 ? 15 HELX_P HELX_P8 8 HIS A 143 ? GLY A 162 ? HIS A 173 GLY A 192 1 ? 20 HELX_P HELX_P9 9 SER A 170 ? LEU A 173 ? SER A 200 LEU A 203 5 ? 4 HELX_P HELX_P10 10 PHE A 180 ? GLY A 193 ? PHE A 210 GLY A 223 1 ? 14 HELX_P HELX_P11 11 GLY A 193 ? TYR A 200 ? GLY A 223 TYR A 230 1 ? 8 HELX_P HELX_P12 12 TYR A 200 ? MSE A 212 ? TYR A 230 MSE A 242 1 ? 13 HELX_P HELX_P13 13 ARG A 247 ? GLU A 249 ? ARG A 277 GLU A 279 5 ? 3 HELX_P HELX_P14 14 SER A 250 ? SER A 260 ? SER A 280 SER A 290 1 ? 11 HELX_P HELX_P15 15 PRO A 265 ? SER A 279 ? PRO A 295 SER A 309 1 ? 15 HELX_P HELX_P16 16 SER A 284 ? TRP A 287 ? SER A 314 TRP A 317 5 ? 4 HELX_P HELX_P17 17 GLN A 293 ? THR A 296 ? GLN A 323 THR A 326 5 ? 4 HELX_P HELX_P18 18 ARG A 298 ? THR A 300 ? ARG A 328 THR A 330 5 ? 3 HELX_P HELX_P19 19 PRO A 304 ? GLY A 326 ? PRO A 334 GLY A 356 1 ? 23 HELX_P HELX_P20 20 ASP A 327 ? LEU A 349 ? ASP A 357 LEU A 379 1 ? 23 HELX_P HELX_P21 21 ALA A 373 ? ALA A 375 ? ALA A 403 ALA A 405 5 ? 3 HELX_P HELX_P22 22 LEU A 376 ? VAL A 381 ? LEU A 406 VAL A 411 1 ? 6 HELX_P HELX_P23 23 ALA A 385 ? LEU A 400 ? ALA A 415 LEU A 430 1 ? 16 HELX_P HELX_P24 24 TRP A 423 ? ASN A 436 ? TRP A 453 ASN A 466 1 ? 14 HELX_P HELX_P25 25 GLN A 439 ? LYS A 462 ? GLN A 469 LYS A 492 1 ? 24 HELX_P HELX_P26 26 PHE A 488 ? CYS A 503 ? PHE A 518 CYS A 533 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 503 SG ? ? ? 1_555 A CYS 509 SG A ? A CYS 533 A CYS 539 1_555 ? ? ? ? ? ? ? 2.058 ? disulf2 disulf ? ? A CYS 503 SG ? ? ? 1_555 A CYS 509 SG B ? A CYS 533 A CYS 539 1_555 ? ? ? ? ? ? ? 2.578 ? covale1 covale ? ? A LEU 43 C ? ? ? 1_555 A MSE 44 N ? ? A LEU 73 A MSE 74 1_555 ? ? ? ? ? ? ? 1.320 ? covale2 covale ? ? A MSE 44 C ? ? ? 1_555 A ILE 45 N ? ? A MSE 74 A ILE 75 1_555 ? ? ? ? ? ? ? 1.334 ? covale3 covale ? ? A ARG 50 C ? ? ? 1_555 A MSE 51 N ? ? A ARG 80 A MSE 81 1_555 ? ? ? ? ? ? ? 1.333 ? covale4 covale ? ? A MSE 51 C ? ? ? 1_555 A GLN 52 N ? ? A MSE 81 A GLN 82 1_555 ? ? ? ? ? ? ? 1.334 ? covale5 covale ? ? A THR 134 C ? ? ? 1_555 A MSE 135 N ? ? A THR 164 A MSE 165 1_555 ? ? ? ? ? ? ? 1.335 ? covale6 covale ? ? A MSE 135 C ? ? ? 1_555 A LEU 136 N ? ? A MSE 165 A LEU 166 1_555 ? ? ? ? ? ? ? 1.333 ? covale7 covale ? ? A ASP 149 C ? ? ? 1_555 A MSE 150 N ? ? A ASP 179 A MSE 180 1_555 ? ? ? ? ? ? ? 1.329 ? covale8 covale ? ? A MSE 150 C ? ? ? 1_555 A VAL 151 N ? ? A MSE 180 A VAL 181 1_555 ? ? ? ? ? ? ? 1.329 ? covale9 covale ? ? A LEU 183 C ? ? ? 1_555 A MSE 184 N ? ? A LEU 213 A MSE 214 1_555 ? ? ? ? ? ? ? 1.337 ? covale10 covale ? ? A MSE 184 C ? ? ? 1_555 A VAL 185 N ? ? A MSE 214 A VAL 215 1_555 ? ? ? ? ? ? ? 1.338 ? covale11 covale ? ? A GLN 203 C ? ? ? 1_555 A MSE 204 N ? ? A GLN 233 A MSE 234 1_555 ? ? ? ? ? ? ? 1.335 ? covale12 covale ? ? A MSE 204 C ? ? ? 1_555 A GLN 205 N ? ? A MSE 234 A GLN 235 1_555 ? ? ? ? ? ? ? 1.333 ? covale13 covale ? ? A TRP 211 C ? ? ? 1_555 A MSE 212 N ? ? A TRP 241 A MSE 242 1_555 ? ? ? ? ? ? ? 1.337 ? covale14 covale ? ? A MSE 212 C ? ? ? 1_555 A ASP 213 N ? ? A MSE 242 A ASP 243 1_555 ? ? ? ? ? ? ? 1.328 ? covale15 covale ? ? A TRP 287 C ? ? ? 1_555 A MSE 288 N ? ? A TRP 317 A MSE 318 1_555 ? ? ? ? ? ? ? 1.338 ? covale16 covale ? ? A MSE 288 C ? ? ? 1_555 A ASP 289 N ? ? A MSE 318 A ASP 319 1_555 ? ? ? ? ? ? ? 1.330 ? covale17 covale ? ? A LEU 310 C ? ? ? 1_555 A MSE 311 N ? ? A LEU 340 A MSE 341 1_555 ? ? ? ? ? ? ? 1.341 ? covale18 covale ? ? A MSE 311 C ? ? ? 1_555 A PHE 312 N ? ? A MSE 341 A PHE 342 1_555 ? ? ? ? ? ? ? 1.333 ? covale19 covale ? ? A LYS 313 C ? ? ? 1_555 A MSE 314 N ? ? A LYS 343 A MSE 344 1_555 ? ? ? ? ? ? ? 1.332 ? covale20 covale ? ? A MSE 314 C ? ? ? 1_555 A GLU 315 N ? ? A MSE 344 A GLU 345 1_555 ? ? ? ? ? ? ? 1.329 ? covale21 covale ? ? A ALA 329 C ? ? ? 1_555 A MSE 330 N ? ? A ALA 359 A MSE 360 1_555 ? ? ? ? ? ? ? 1.327 ? covale22 covale ? ? A MSE 330 C ? ? ? 1_555 A ALA 331 N ? ? A MSE 360 A ALA 361 1_555 ? ? ? ? ? ? ? 1.331 ? covale23 covale ? ? A LYS 391 C ? ? ? 1_555 A MSE 392 N ? ? A LYS 421 A MSE 422 1_555 ? ? ? ? ? ? ? 1.334 ? covale24 covale ? ? A MSE 392 C ? ? ? 1_555 A ALA 393 N ? ? A MSE 422 A ALA 423 1_555 ? ? ? ? ? ? ? 1.329 ? covale25 covale ? ? A ALA 443 C ? ? ? 1_555 A MSE 444 N ? ? A ALA 473 A MSE 474 1_555 ? ? ? ? ? ? ? 1.336 ? covale26 covale ? ? A MSE 444 C ? ? ? 1_555 A ASP 445 N ? ? A MSE 474 A ASP 475 1_555 ? ? ? ? ? ? ? 1.334 ? covale27 covale ? ? A LYS 497 C ? ? ? 1_555 A MSE 498 N ? ? A LYS 527 A MSE 528 1_555 ? ? ? ? ? ? ? 1.335 ? covale28 covale ? ? A MSE 498 C ? ? ? 1_555 A LEU 499 N ? ? A MSE 528 A LEU 529 1_555 ? ? ? ? ? ? ? 1.325 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASP 282 A . ? ASP 312 A PHE 283 A ? PHE 313 A 1 0.25 2 ALA 419 A . ? ALA 449 A PRO 420 A ? PRO 450 A 1 -2.73 3 GLY 487 A . ? GLY 517 A PHE 488 A ? PHE 518 A 1 -4.24 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 2 ? AC ? 3 ? AD ? 3 ? AE ? 2 ? AF ? 2 ? AG ? 2 ? AH ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AD 1 2 ? anti-parallel AD 2 3 ? anti-parallel AE 1 2 ? anti-parallel AF 1 2 ? anti-parallel AG 1 2 ? anti-parallel AH 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 37 ? PRO A 38 ? VAL A 67 PRO A 68 AA 2 PHE A 68 ? THR A 69 ? PHE A 98 THR A 99 AB 1 THR A 97 ? ARG A 98 ? THR A 127 ARG A 128 AB 2 TYR A 116 ? VAL A 117 ? TYR A 146 VAL A 147 AC 1 GLN A 222 ? GLU A 224 ? GLN A 252 GLU A 254 AC 2 VAL A 227 ? LYS A 229 ? VAL A 257 LYS A 259 AC 3 LEU A 235 ? ASN A 237 ? LEU A 265 ASN A 267 AD 1 ILE A 302 ? VAL A 303 ? ILE A 332 VAL A 333 AD 2 TYR A 360 ? ASP A 361 ? TYR A 390 ASP A 391 AD 3 LYS A 366 ? VAL A 367 ? LYS A 396 VAL A 397 AE 1 TRP A 350 ? ASN A 351 ? TRP A 380 ASN A 381 AE 2 TRP A 356 ? TYR A 357 ? TRP A 386 TYR A 387 AF 1 LEU A 401 ? GLN A 402 ? LEU A 431 GLN A 432 AF 2 GLY A 405 ? LEU A 406 ? GLY A 435 LEU A 436 AG 1 ASN A 421 ? GLY A 422 ? ASN A 451 GLY A 452 AG 2 TYR A 468 ? ASP A 469 ? TYR A 498 ASP A 499 AH 1 LEU A 464 ? VAL A 465 ? LEU A 494 VAL A 495 AH 2 ASP A 486 ? GLY A 487 ? ASP A 516 GLY A 517 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 37 ? N VAL A 67 O THR A 69 ? O THR A 99 AB 1 2 N ARG A 98 ? N ARG A 128 O TYR A 116 ? O TYR A 146 AC 1 2 N GLU A 224 ? N GLU A 254 O VAL A 227 ? O VAL A 257 AC 2 3 N VAL A 228 ? N VAL A 258 O LEU A 236 ? O LEU A 266 AD 1 2 N VAL A 303 ? N VAL A 333 O TYR A 360 ? O TYR A 390 AD 2 3 N ASP A 361 ? N ASP A 391 O LYS A 366 ? O LYS A 396 AE 1 2 N ASN A 351 ? N ASN A 381 O TRP A 356 ? O TRP A 386 AF 1 2 N GLN A 402 ? N GLN A 432 O GLY A 405 ? O GLY A 435 AG 1 2 N GLY A 422 ? N GLY A 452 O TYR A 468 ? O TYR A 498 AH 1 2 N LEU A 464 ? N LEU A 494 O GLY A 487 ? O GLY A 517 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 23 _struct_site.details 'BINDING SITE FOR RESIDUE VDM A1548' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 23 ARG A 122 ? ARG A 152 . ? 1_555 ? 2 AC1 23 PHE A 123 ? PHE A 153 . ? 1_555 ? 3 AC1 23 TYR A 127 ? TYR A 157 . ? 1_555 ? 4 AC1 23 TRP A 129 ? TRP A 159 . ? 1_555 ? 5 AC1 23 ASP A 130 ? ASP A 160 . ? 1_555 ? 6 AC1 23 ASN A 166 ? ASN A 196 . ? 1_555 ? 7 AC1 23 TYR A 172 ? TYR A 202 . ? 1_555 ? 8 AC1 23 ARG A 175 ? ARG A 205 . ? 1_555 ? 9 AC1 23 GLN A 177 ? GLN A 207 . ? 1_555 ? 10 AC1 23 ARG A 247 ? ARG A 277 . ? 1_555 ? 11 AC1 23 GLU A 249 ? GLU A 279 . ? 1_555 ? 12 AC1 23 SER A 250 ? SER A 280 . ? 1_555 ? 13 AC1 23 ALA A 277 ? ALA A 307 . ? 1_555 ? 14 AC1 23 GLY A 280 ? GLY A 310 . ? 1_555 ? 15 AC1 23 ASP A 282 ? ASP A 312 . ? 1_555 ? 16 AC1 23 GLN A 416 ? GLN A 446 . ? 1_555 ? 17 AC1 23 TRP A 417 ? TRP A 447 . ? 1_555 ? 18 AC1 23 GLU A 481 ? GLU A 511 . ? 1_555 ? 19 AC1 23 TYR A 482 ? TYR A 512 . ? 1_555 ? 20 AC1 23 PHE A 488 ? PHE A 518 . ? 1_555 ? 21 AC1 23 TRP A 490 ? TRP A 520 . ? 1_555 ? 22 AC1 23 HOH C . ? HOH A 2178 . ? 1_555 ? 23 AC1 23 HOH C . ? HOH A 2263 . ? 1_555 ? # _database_PDB_matrix.entry_id 2JF4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2JF4 _atom_sites.fract_transf_matrix[1][1] 0.020243 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009737 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009692 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 31 ? ? ? A . n A 1 2 GLU 2 32 ? ? ? A . n A 1 3 THR 3 33 ? ? ? A . n A 1 4 PRO 4 34 ? ? ? A . n A 1 5 VAL 5 35 ? ? ? A . n A 1 6 THR 6 36 ? ? ? A . n A 1 7 PRO 7 37 37 PRO PRO A . n A 1 8 GLN 8 38 38 GLN GLN A . n A 1 9 PRO 9 39 39 PRO PRO A . n A 1 10 PRO 10 40 40 PRO PRO A . n A 1 11 ASP 11 41 41 ASP ASP A . n A 1 12 ILE 12 42 42 ILE ILE A . n A 1 13 LEU 13 43 43 LEU LEU A . n A 1 14 LEU 14 44 44 LEU LEU A . n A 1 15 GLY 15 45 45 GLY GLY A . n A 1 16 PRO 16 46 46 PRO PRO A . n A 1 17 LEU 17 47 47 LEU LEU A . n A 1 18 PHE 18 48 48 PHE PHE A . n A 1 19 ASN 19 49 49 ASN ASN A . n A 1 20 ASP 20 50 50 ASP ASP A . n A 1 21 VAL 21 51 51 VAL VAL A . n A 1 22 GLN 22 52 52 GLN GLN A . n A 1 23 ASN 23 53 53 ASN ASN A . n A 1 24 ALA 24 54 54 ALA ALA A . n A 1 25 LYS 25 55 55 LYS LYS A . n A 1 26 LEU 26 56 56 LEU LEU A . n A 1 27 PHE 27 57 57 PHE PHE A . n A 1 28 PRO 28 58 58 PRO PRO A . n A 1 29 ASP 29 59 59 ASP ASP A . n A 1 30 GLN 30 60 60 GLN GLN A . n A 1 31 LYS 31 61 61 LYS LYS A . n A 1 32 THR 32 62 62 THR THR A . n A 1 33 PHE 33 63 63 PHE PHE A . n A 1 34 ALA 34 64 64 ALA ALA A . n A 1 35 ASP 35 65 65 ASP ASP A . n A 1 36 ALA 36 66 66 ALA ALA A . n A 1 37 VAL 37 67 67 VAL VAL A . n A 1 38 PRO 38 68 68 PRO PRO A . n A 1 39 ASN 39 69 69 ASN ASN A . n A 1 40 SER 40 70 70 SER SER A . n A 1 41 ASP 41 71 71 ASP ASP A . n A 1 42 PRO 42 72 72 PRO PRO A . n A 1 43 LEU 43 73 73 LEU LEU A . n A 1 44 MSE 44 74 74 MSE MSE A . n A 1 45 ILE 45 75 75 ILE ILE A . n A 1 46 LEU 46 76 76 LEU LEU A . n A 1 47 ALA 47 77 77 ALA ALA A . n A 1 48 ASP 48 78 78 ASP ASP A . n A 1 49 TYR 49 79 79 TYR TYR A . n A 1 50 ARG 50 80 80 ARG ARG A . n A 1 51 MSE 51 81 81 MSE MSE A . n A 1 52 GLN 52 82 82 GLN GLN A . n A 1 53 GLN 53 83 83 GLN GLN A . n A 1 54 ASN 54 84 84 ASN ASN A . n A 1 55 GLN 55 85 85 GLN GLN A . n A 1 56 SER 56 86 86 SER SER A . n A 1 57 GLY 57 87 87 GLY GLY A . n A 1 58 PHE 58 88 88 PHE PHE A . n A 1 59 ASP 59 89 89 ASP ASP A . n A 1 60 LEU 60 90 90 LEU LEU A . n A 1 61 ARG 61 91 91 ARG ARG A . n A 1 62 HIS 62 92 92 HIS HIS A . n A 1 63 PHE 63 93 93 PHE PHE A . n A 1 64 VAL 64 94 94 VAL VAL A . n A 1 65 ASN 65 95 95 ASN ASN A . n A 1 66 VAL 66 96 96 VAL VAL A . n A 1 67 ASN 67 97 97 ASN ASN A . n A 1 68 PHE 68 98 98 PHE PHE A . n A 1 69 THR 69 99 99 THR THR A . n A 1 70 LEU 70 100 100 LEU LEU A . n A 1 71 PRO 71 101 101 PRO PRO A . n A 1 72 LYS 72 102 ? ? ? A . n A 1 73 GLU 73 103 ? ? ? A . n A 1 74 GLY 74 104 ? ? ? A . n A 1 75 GLU 75 105 ? ? ? A . n A 1 76 LYS 76 106 ? ? ? A . n A 1 77 TYR 77 107 ? ? ? A . n A 1 78 VAL 78 108 ? ? ? A . n A 1 79 PRO 79 109 ? ? ? A . n A 1 80 PRO 80 110 ? ? ? A . n A 1 81 GLU 81 111 ? ? ? A . n A 1 82 GLY 82 112 ? ? ? A . n A 1 83 GLN 83 113 113 GLN GLN A . n A 1 84 SER 84 114 114 SER SER A . n A 1 85 LEU 85 115 115 LEU LEU A . n A 1 86 ARG 86 116 116 ARG ARG A . n A 1 87 GLU 87 117 117 GLU GLU A . n A 1 88 HIS 88 118 118 HIS HIS A . n A 1 89 ILE 89 119 119 ILE ILE A . n A 1 90 ASP 90 120 120 ASP ASP A . n A 1 91 GLY 91 121 121 GLY GLY A . n A 1 92 LEU 92 122 122 LEU LEU A . n A 1 93 TRP 93 123 123 TRP TRP A . n A 1 94 PRO 94 124 124 PRO PRO A . n A 1 95 VAL 95 125 125 VAL VAL A . n A 1 96 LEU 96 126 126 LEU LEU A . n A 1 97 THR 97 127 127 THR THR A . n A 1 98 ARG 98 128 128 ARG ARG A . n A 1 99 SER 99 129 129 SER SER A . n A 1 100 THR 100 130 130 THR THR A . n A 1 101 GLU 101 131 131 GLU GLU A . n A 1 102 ASN 102 132 132 ASN ASN A . n A 1 103 THR 103 133 133 THR THR A . n A 1 104 GLU 104 134 134 GLU GLU A . n A 1 105 LYS 105 135 135 LYS LYS A . n A 1 106 TRP 106 136 136 TRP TRP A . n A 1 107 ASP 107 137 137 ASP ASP A . n A 1 108 SER 108 138 138 SER SER A . n A 1 109 LEU 109 139 139 LEU LEU A . n A 1 110 LEU 110 140 140 LEU LEU A . n A 1 111 PRO 111 141 141 PRO PRO A . n A 1 112 LEU 112 142 142 LEU LEU A . n A 1 113 PRO 113 143 143 PRO PRO A . n A 1 114 GLU 114 144 144 GLU GLU A . n A 1 115 PRO 115 145 145 PRO PRO A . n A 1 116 TYR 116 146 146 TYR TYR A . n A 1 117 VAL 117 147 147 VAL VAL A . n A 1 118 VAL 118 148 148 VAL VAL A . n A 1 119 PRO 119 149 149 PRO PRO A . n A 1 120 GLY 120 150 150 GLY GLY A . n A 1 121 GLY 121 151 151 GLY GLY A . n A 1 122 ARG 122 152 152 ARG ARG A . n A 1 123 PHE 123 153 153 PHE PHE A . n A 1 124 ARG 124 154 154 ARG ARG A . n A 1 125 GLU 125 155 155 GLU GLU A . n A 1 126 VAL 126 156 156 VAL VAL A . n A 1 127 TYR 127 157 157 TYR TYR A . n A 1 128 TYR 128 158 158 TYR TYR A . n A 1 129 TRP 129 159 159 TRP TRP A . n A 1 130 ASP 130 160 160 ASP ASP A . n A 1 131 SER 131 161 161 SER SER A . n A 1 132 TYR 132 162 162 TYR TYR A . n A 1 133 PHE 133 163 163 PHE PHE A . n A 1 134 THR 134 164 164 THR THR A . n A 1 135 MSE 135 165 165 MSE MSE A . n A 1 136 LEU 136 166 166 LEU LEU A . n A 1 137 GLY 137 167 167 GLY GLY A . n A 1 138 LEU 138 168 168 LEU LEU A . n A 1 139 ALA 139 169 169 ALA ALA A . n A 1 140 GLU 140 170 170 GLU GLU A . n A 1 141 SER 141 171 171 SER SER A . n A 1 142 GLY 142 172 172 GLY GLY A . n A 1 143 HIS 143 173 173 HIS HIS A . n A 1 144 TRP 144 174 174 TRP TRP A . n A 1 145 ASP 145 175 175 ASP ASP A . n A 1 146 LYS 146 176 176 LYS LYS A . n A 1 147 VAL 147 177 177 VAL VAL A . n A 1 148 ALA 148 178 178 ALA ALA A . n A 1 149 ASP 149 179 179 ASP ASP A . n A 1 150 MSE 150 180 180 MSE MSE A . n A 1 151 VAL 151 181 181 VAL VAL A . n A 1 152 ALA 152 182 182 ALA ALA A . n A 1 153 ASN 153 183 183 ASN ASN A . n A 1 154 PHE 154 184 184 PHE PHE A . n A 1 155 ALA 155 185 185 ALA ALA A . n A 1 156 HIS 156 186 186 HIS HIS A . n A 1 157 GLU 157 187 187 GLU GLU A . n A 1 158 ILE 158 188 188 ILE ILE A . n A 1 159 ASP 159 189 189 ASP ASP A . n A 1 160 THR 160 190 190 THR THR A . n A 1 161 TYR 161 191 191 TYR TYR A . n A 1 162 GLY 162 192 192 GLY GLY A . n A 1 163 HIS 163 193 193 HIS HIS A . n A 1 164 ILE 164 194 194 ILE ILE A . n A 1 165 PRO 165 195 195 PRO PRO A . n A 1 166 ASN 166 196 196 ASN ASN A . n A 1 167 GLY 167 197 197 GLY GLY A . n A 1 168 ASN 168 198 198 ASN ASN A . n A 1 169 ARG 169 199 199 ARG ARG A . n A 1 170 SER 170 200 200 SER SER A . n A 1 171 TYR 171 201 201 TYR TYR A . n A 1 172 TYR 172 202 202 TYR TYR A . n A 1 173 LEU 173 203 203 LEU LEU A . n A 1 174 SER 174 204 204 SER SER A . n A 1 175 ARG 175 205 205 ARG ARG A . n A 1 176 SER 176 206 206 SER SER A . n A 1 177 GLN 177 207 207 GLN GLN A . n A 1 178 PRO 178 208 208 PRO PRO A . n A 1 179 PRO 179 209 209 PRO PRO A . n A 1 180 PHE 180 210 210 PHE PHE A . n A 1 181 PHE 181 211 211 PHE PHE A . n A 1 182 ALA 182 212 212 ALA ALA A . n A 1 183 LEU 183 213 213 LEU LEU A . n A 1 184 MSE 184 214 214 MSE MSE A . n A 1 185 VAL 185 215 215 VAL VAL A . n A 1 186 GLU 186 216 216 GLU GLU A . n A 1 187 LEU 187 217 217 LEU LEU A . n A 1 188 LEU 188 218 218 LEU LEU A . n A 1 189 ALA 189 219 219 ALA ALA A . n A 1 190 GLN 190 220 220 GLN GLN A . n A 1 191 HIS 191 221 221 HIS HIS A . n A 1 192 GLU 192 222 222 GLU GLU A . n A 1 193 GLY 193 223 223 GLY GLY A . n A 1 194 ASP 194 224 224 ASP ASP A . n A 1 195 ALA 195 225 225 ALA ALA A . n A 1 196 ALA 196 226 226 ALA ALA A . n A 1 197 LEU 197 227 227 LEU LEU A . n A 1 198 LYS 198 228 228 LYS LYS A . n A 1 199 GLN 199 229 229 GLN GLN A . n A 1 200 TYR 200 230 230 TYR TYR A . n A 1 201 LEU 201 231 231 LEU LEU A . n A 1 202 PRO 202 232 232 PRO PRO A . n A 1 203 GLN 203 233 233 GLN GLN A . n A 1 204 MSE 204 234 234 MSE MSE A . n A 1 205 GLN 205 235 235 GLN GLN A . n A 1 206 LYS 206 236 236 LYS LYS A . n A 1 207 GLU 207 237 237 GLU GLU A . n A 1 208 TYR 208 238 238 TYR TYR A . n A 1 209 ALA 209 239 239 ALA ALA A . n A 1 210 TYR 210 240 240 TYR TYR A . n A 1 211 TRP 211 241 241 TRP TRP A . n A 1 212 MSE 212 242 242 MSE MSE A . n A 1 213 ASP 213 243 243 ASP ASP A . n A 1 214 GLY 214 244 244 GLY GLY A . n A 1 215 VAL 215 245 245 VAL VAL A . n A 1 216 GLU 216 246 246 GLU GLU A . n A 1 217 ASN 217 247 247 ASN ASN A . n A 1 218 LEU 218 248 248 LEU LEU A . n A 1 219 GLN 219 249 249 GLN GLN A . n A 1 220 ALA 220 250 250 ALA ALA A . n A 1 221 GLY 221 251 251 GLY GLY A . n A 1 222 GLN 222 252 252 GLN GLN A . n A 1 223 GLN 223 253 253 GLN GLN A . n A 1 224 GLU 224 254 254 GLU GLU A . n A 1 225 LYS 225 255 255 LYS LYS A . n A 1 226 ARG 226 256 256 ARG ARG A . n A 1 227 VAL 227 257 257 VAL VAL A . n A 1 228 VAL 228 258 258 VAL VAL A . n A 1 229 LYS 229 259 259 LYS LYS A . n A 1 230 LEU 230 260 260 LEU LEU A . n A 1 231 GLN 231 261 261 GLN GLN A . n A 1 232 ASP 232 262 262 ASP ASP A . n A 1 233 GLY 233 263 263 GLY GLY A . n A 1 234 THR 234 264 264 THR THR A . n A 1 235 LEU 235 265 265 LEU LEU A . n A 1 236 LEU 236 266 266 LEU LEU A . n A 1 237 ASN 237 267 267 ASN ASN A . n A 1 238 ARG 238 268 268 ARG ARG A . n A 1 239 TYR 239 269 269 TYR TYR A . n A 1 240 TRP 240 270 270 TRP TRP A . n A 1 241 ASP 241 271 271 ASP ASP A . n A 1 242 ASP 242 272 272 ASP ASP A . n A 1 243 ARG 243 273 273 ARG ARG A . n A 1 244 ASP 244 274 274 ASP ASP A . n A 1 245 THR 245 275 275 THR THR A . n A 1 246 PRO 246 276 276 PRO PRO A . n A 1 247 ARG 247 277 277 ARG ARG A . n A 1 248 PRO 248 278 278 PRO PRO A . n A 1 249 GLU 249 279 279 GLU GLU A . n A 1 250 SER 250 280 280 SER SER A . n A 1 251 TRP 251 281 281 TRP TRP A . n A 1 252 VAL 252 282 282 VAL VAL A . n A 1 253 GLU 253 283 283 GLU GLU A . n A 1 254 ASP 254 284 284 ASP ASP A . n A 1 255 ILE 255 285 285 ILE ILE A . n A 1 256 ALA 256 286 286 ALA ALA A . n A 1 257 THR 257 287 287 THR THR A . n A 1 258 ALA 258 288 288 ALA ALA A . n A 1 259 LYS 259 289 289 LYS LYS A . n A 1 260 SER 260 290 290 SER SER A . n A 1 261 ASN 261 291 291 ASN ASN A . n A 1 262 PRO 262 292 292 PRO PRO A . n A 1 263 ASN 263 293 293 ASN ASN A . n A 1 264 ARG 264 294 294 ARG ARG A . n A 1 265 PRO 265 295 295 PRO PRO A . n A 1 266 ALA 266 296 296 ALA ALA A . n A 1 267 THR 267 297 297 THR THR A . n A 1 268 GLU 268 298 298 GLU GLU A . n A 1 269 ILE 269 299 299 ILE ILE A . n A 1 270 TYR 270 300 300 TYR TYR A . n A 1 271 ARG 271 301 301 ARG ARG A . n A 1 272 ASP 272 302 302 ASP ASP A . n A 1 273 LEU 273 303 303 LEU LEU A . n A 1 274 ARG 274 304 304 ARG ARG A . n A 1 275 SER 275 305 305 SER SER A . n A 1 276 ALA 276 306 306 ALA ALA A . n A 1 277 ALA 277 307 307 ALA ALA A . n A 1 278 ALA 278 308 308 ALA ALA A . n A 1 279 SER 279 309 309 SER SER A . n A 1 280 GLY 280 310 310 GLY GLY A . n A 1 281 TRP 281 311 311 TRP TRP A . n A 1 282 ASP 282 312 312 ASP ASP A . n A 1 283 PHE 283 313 313 PHE PHE A . n A 1 284 SER 284 314 314 SER SER A . n A 1 285 SER 285 315 315 SER SER A . n A 1 286 ARG 286 316 316 ARG ARG A . n A 1 287 TRP 287 317 317 TRP TRP A . n A 1 288 MSE 288 318 318 MSE MSE A . n A 1 289 ASP 289 319 319 ASP ASP A . n A 1 290 ASN 290 320 320 ASN ASN A . n A 1 291 PRO 291 321 321 PRO PRO A . n A 1 292 GLN 292 322 322 GLN GLN A . n A 1 293 GLN 293 323 323 GLN GLN A . n A 1 294 LEU 294 324 324 LEU LEU A . n A 1 295 ASN 295 325 325 ASN ASN A . n A 1 296 THR 296 326 326 THR THR A . n A 1 297 LEU 297 327 327 LEU LEU A . n A 1 298 ARG 298 328 328 ARG ARG A . n A 1 299 THR 299 329 329 THR THR A . n A 1 300 THR 300 330 330 THR THR A . n A 1 301 SER 301 331 331 SER SER A . n A 1 302 ILE 302 332 332 ILE ILE A . n A 1 303 VAL 303 333 333 VAL VAL A . n A 1 304 PRO 304 334 334 PRO PRO A . n A 1 305 VAL 305 335 335 VAL VAL A . n A 1 306 ASP 306 336 336 ASP ASP A . n A 1 307 LEU 307 337 337 LEU LEU A . n A 1 308 ASN 308 338 338 ASN ASN A . n A 1 309 SER 309 339 339 SER SER A . n A 1 310 LEU 310 340 340 LEU LEU A . n A 1 311 MSE 311 341 341 MSE MSE A . n A 1 312 PHE 312 342 342 PHE PHE A . n A 1 313 LYS 313 343 343 LYS LYS A . n A 1 314 MSE 314 344 344 MSE MSE A . n A 1 315 GLU 315 345 345 GLU GLU A . n A 1 316 LYS 316 346 346 LYS LYS A . n A 1 317 ILE 317 347 347 ILE ILE A . n A 1 318 LEU 318 348 348 LEU LEU A . n A 1 319 ALA 319 349 349 ALA ALA A . n A 1 320 ARG 320 350 350 ARG ARG A . n A 1 321 ALA 321 351 351 ALA ALA A . n A 1 322 SER 322 352 352 SER SER A . n A 1 323 LYS 323 353 353 LYS LYS A . n A 1 324 ALA 324 354 354 ALA ALA A . n A 1 325 ALA 325 355 355 ALA ALA A . n A 1 326 GLY 326 356 356 GLY GLY A . n A 1 327 ASP 327 357 357 ASP ASP A . n A 1 328 ASN 328 358 358 ASN ASN A . n A 1 329 ALA 329 359 359 ALA ALA A . n A 1 330 MSE 330 360 360 MSE MSE A . n A 1 331 ALA 331 361 361 ALA ALA A . n A 1 332 ASN 332 362 362 ASN ASN A . n A 1 333 GLN 333 363 363 GLN GLN A . n A 1 334 TYR 334 364 364 TYR TYR A . n A 1 335 GLU 335 365 365 GLU GLU A . n A 1 336 THR 336 366 366 THR THR A . n A 1 337 LEU 337 367 367 LEU LEU A . n A 1 338 ALA 338 368 368 ALA ALA A . n A 1 339 ASN 339 369 369 ASN ASN A . n A 1 340 ALA 340 370 370 ALA ALA A . n A 1 341 ARG 341 371 371 ARG ARG A . n A 1 342 GLN 342 372 372 GLN GLN A . n A 1 343 LYS 343 373 373 LYS LYS A . n A 1 344 GLY 344 374 374 GLY GLY A . n A 1 345 ILE 345 375 375 ILE ILE A . n A 1 346 GLU 346 376 376 GLU GLU A . n A 1 347 LYS 347 377 377 LYS LYS A . n A 1 348 TYR 348 378 378 TYR TYR A . n A 1 349 LEU 349 379 379 LEU LEU A . n A 1 350 TRP 350 380 380 TRP TRP A . n A 1 351 ASN 351 381 381 ASN ASN A . n A 1 352 ASP 352 382 382 ASP ASP A . n A 1 353 GLN 353 383 383 GLN GLN A . n A 1 354 GLN 354 384 384 GLN GLN A . n A 1 355 GLY 355 385 385 GLY GLY A . n A 1 356 TRP 356 386 386 TRP TRP A . n A 1 357 TYR 357 387 387 TYR TYR A . n A 1 358 ALA 358 388 388 ALA ALA A . n A 1 359 ASP 359 389 389 ASP ASP A . n A 1 360 TYR 360 390 390 TYR TYR A . n A 1 361 ASP 361 391 391 ASP ASP A . n A 1 362 LEU 362 392 392 LEU LEU A . n A 1 363 LYS 363 393 393 LYS LYS A . n A 1 364 SER 364 394 394 SER SER A . n A 1 365 HIS 365 395 395 HIS HIS A . n A 1 366 LYS 366 396 396 LYS LYS A . n A 1 367 VAL 367 397 397 VAL VAL A . n A 1 368 ARG 368 398 398 ARG ARG A . n A 1 369 ASN 369 399 399 ASN ASN A . n A 1 370 GLN 370 400 400 GLN GLN A . n A 1 371 LEU 371 401 401 LEU LEU A . n A 1 372 THR 372 402 402 THR THR A . n A 1 373 ALA 373 403 403 ALA ALA A . n A 1 374 ALA 374 404 404 ALA ALA A . n A 1 375 ALA 375 405 405 ALA ALA A . n A 1 376 LEU 376 406 406 LEU LEU A . n A 1 377 PHE 377 407 407 PHE PHE A . n A 1 378 PRO 378 408 408 PRO PRO A . n A 1 379 LEU 379 409 409 LEU LEU A . n A 1 380 TYR 380 410 410 TYR TYR A . n A 1 381 VAL 381 411 411 VAL VAL A . n A 1 382 ASN 382 412 412 ASN ASN A . n A 1 383 ALA 383 413 413 ALA ALA A . n A 1 384 ALA 384 414 414 ALA ALA A . n A 1 385 ALA 385 415 415 ALA ALA A . n A 1 386 LYS 386 416 416 LYS LYS A . n A 1 387 ASP 387 417 417 ASP ASP A . n A 1 388 ARG 388 418 418 ARG ARG A . n A 1 389 ALA 389 419 419 ALA ALA A . n A 1 390 ASN 390 420 420 ASN ASN A . n A 1 391 LYS 391 421 421 LYS LYS A . n A 1 392 MSE 392 422 422 MSE MSE A . n A 1 393 ALA 393 423 423 ALA ALA A . n A 1 394 THR 394 424 424 THR THR A . n A 1 395 ALA 395 425 425 ALA ALA A . n A 1 396 THR 396 426 426 THR THR A . n A 1 397 LYS 397 427 427 LYS LYS A . n A 1 398 THR 398 428 428 THR THR A . n A 1 399 HIS 399 429 429 HIS HIS A . n A 1 400 LEU 400 430 430 LEU LEU A . n A 1 401 LEU 401 431 431 LEU LEU A . n A 1 402 GLN 402 432 432 GLN GLN A . n A 1 403 PRO 403 433 433 PRO PRO A . n A 1 404 GLY 404 434 434 GLY GLY A . n A 1 405 GLY 405 435 435 GLY GLY A . n A 1 406 LEU 406 436 436 LEU LEU A . n A 1 407 ASN 407 437 437 ASN ASN A . n A 1 408 THR 408 438 438 THR THR A . n A 1 409 THR 409 439 439 THR THR A . n A 1 410 SER 410 440 440 SER SER A . n A 1 411 VAL 411 441 441 VAL VAL A . n A 1 412 LYS 412 442 442 LYS LYS A . n A 1 413 SER 413 443 443 SER SER A . n A 1 414 GLY 414 444 444 GLY GLY A . n A 1 415 GLN 415 445 445 GLN GLN A . n A 1 416 GLN 416 446 446 GLN GLN A . n A 1 417 TRP 417 447 447 TRP TRP A . n A 1 418 ASP 418 448 448 ASP ASP A . n A 1 419 ALA 419 449 449 ALA ALA A . n A 1 420 PRO 420 450 450 PRO PRO A . n A 1 421 ASN 421 451 451 ASN ASN A . n A 1 422 GLY 422 452 452 GLY GLY A . n A 1 423 TRP 423 453 453 TRP TRP A . n A 1 424 ALA 424 454 454 ALA ALA A . n A 1 425 PRO 425 455 455 PRO PRO A . n A 1 426 LEU 426 456 456 LEU LEU A . n A 1 427 GLN 427 457 457 GLN GLN A . n A 1 428 TRP 428 458 458 TRP TRP A . n A 1 429 VAL 429 459 459 VAL VAL A . n A 1 430 ALA 430 460 460 ALA ALA A . n A 1 431 THR 431 461 461 THR THR A . n A 1 432 GLU 432 462 462 GLU GLU A . n A 1 433 GLY 433 463 463 GLY GLY A . n A 1 434 LEU 434 464 464 LEU LEU A . n A 1 435 GLN 435 465 465 GLN GLN A . n A 1 436 ASN 436 466 466 ASN ASN A . n A 1 437 TYR 437 467 467 TYR TYR A . n A 1 438 GLY 438 468 468 GLY GLY A . n A 1 439 GLN 439 469 469 GLN GLN A . n A 1 440 LYS 440 470 470 LYS LYS A . n A 1 441 GLU 441 471 471 GLU GLU A . n A 1 442 VAL 442 472 472 VAL VAL A . n A 1 443 ALA 443 473 473 ALA ALA A . n A 1 444 MSE 444 474 474 MSE MSE A . n A 1 445 ASP 445 475 475 ASP ASP A . n A 1 446 ILE 446 476 476 ILE ILE A . n A 1 447 SER 447 477 477 SER SER A . n A 1 448 TRP 448 478 478 TRP TRP A . n A 1 449 HIS 449 479 479 HIS HIS A . n A 1 450 PHE 450 480 480 PHE PHE A . n A 1 451 LEU 451 481 481 LEU LEU A . n A 1 452 THR 452 482 482 THR THR A . n A 1 453 ASN 453 483 483 ASN ASN A . n A 1 454 VAL 454 484 484 VAL VAL A . n A 1 455 GLN 455 485 485 GLN GLN A . n A 1 456 HIS 456 486 486 HIS HIS A . n A 1 457 THR 457 487 487 THR THR A . n A 1 458 TYR 458 488 488 TYR TYR A . n A 1 459 ASP 459 489 489 ASP ASP A . n A 1 460 ARG 460 490 490 ARG ARG A . n A 1 461 GLU 461 491 491 GLU GLU A . n A 1 462 LYS 462 492 492 LYS LYS A . n A 1 463 LYS 463 493 493 LYS LYS A . n A 1 464 LEU 464 494 494 LEU LEU A . n A 1 465 VAL 465 495 495 VAL VAL A . n A 1 466 GLU 466 496 496 GLU GLU A . n A 1 467 LYS 467 497 497 LYS LYS A . n A 1 468 TYR 468 498 498 TYR TYR A . n A 1 469 ASP 469 499 499 ASP ASP A . n A 1 470 VAL 470 500 500 VAL VAL A . n A 1 471 SER 471 501 501 SER SER A . n A 1 472 THR 472 502 502 THR THR A . n A 1 473 THR 473 503 503 THR THR A . n A 1 474 GLY 474 504 504 GLY GLY A . n A 1 475 THR 475 505 505 THR THR A . n A 1 476 GLY 476 506 506 GLY GLY A . n A 1 477 GLY 477 507 507 GLY GLY A . n A 1 478 GLY 478 508 508 GLY GLY A . n A 1 479 GLY 479 509 509 GLY GLY A . n A 1 480 GLY 480 510 510 GLY GLY A . n A 1 481 GLU 481 511 511 GLU GLU A . n A 1 482 TYR 482 512 512 TYR TYR A . n A 1 483 PRO 483 513 513 PRO PRO A . n A 1 484 LEU 484 514 514 LEU LEU A . n A 1 485 GLN 485 515 515 GLN GLN A . n A 1 486 ASP 486 516 516 ASP ASP A . n A 1 487 GLY 487 517 517 GLY GLY A . n A 1 488 PHE 488 518 518 PHE PHE A . n A 1 489 GLY 489 519 519 GLY GLY A . n A 1 490 TRP 490 520 520 TRP TRP A . n A 1 491 THR 491 521 521 THR THR A . n A 1 492 ASN 492 522 522 ASN ASN A . n A 1 493 GLY 493 523 523 GLY GLY A . n A 1 494 VAL 494 524 524 VAL VAL A . n A 1 495 THR 495 525 525 THR THR A . n A 1 496 LEU 496 526 526 LEU LEU A . n A 1 497 LYS 497 527 527 LYS LYS A . n A 1 498 MSE 498 528 528 MSE MSE A . n A 1 499 LEU 499 529 529 LEU LEU A . n A 1 500 ASP 500 530 530 ASP ASP A . n A 1 501 LEU 501 531 531 LEU LEU A . n A 1 502 ILE 502 532 532 ILE ILE A . n A 1 503 CYS 503 533 533 CYS CYS A . n A 1 504 PRO 504 534 534 PRO PRO A . n A 1 505 LYS 505 535 535 LYS LYS A . n A 1 506 GLU 506 536 536 GLU GLU A . n A 1 507 GLN 507 537 537 GLN GLN A . n A 1 508 PRO 508 538 538 PRO PRO A . n A 1 509 CYS 509 539 539 CYS CYS A . n A 1 510 ASP 510 540 540 ASP ASP A . n A 1 511 ASN 511 541 541 ASN ASN A . n A 1 512 VAL 512 542 542 VAL VAL A . n A 1 513 PRO 513 543 543 PRO PRO A . n A 1 514 ALA 514 544 544 ALA ALA A . n A 1 515 THR 515 545 545 THR THR A . n A 1 516 ARG 516 546 546 ARG ARG A . n A 1 517 PRO 517 547 547 PRO PRO A . n A 1 518 THR 518 548 ? ? ? A . n A 1 519 VAL 519 549 ? ? ? A . n A 1 520 LYS 520 550 ? ? ? A . n A 1 521 SER 521 551 ? ? ? A . n A 1 522 ALA 522 552 ? ? ? A . n A 1 523 THR 523 553 ? ? ? A . n A 1 524 THR 524 554 ? ? ? A . n A 1 525 GLN 525 555 ? ? ? A . n A 1 526 PRO 526 556 ? ? ? A . n A 1 527 SER 527 557 ? ? ? A . n A 1 528 THR 528 558 ? ? ? A . n A 1 529 LYS 529 559 ? ? ? A . n A 1 530 GLU 530 560 ? ? ? A . n A 1 531 ALA 531 561 ? ? ? A . n A 1 532 GLN 532 562 ? ? ? A . n A 1 533 PRO 533 563 ? ? ? A . n A 1 534 THR 534 564 ? ? ? A . n A 1 535 PRO 535 565 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VDM 1 1548 1548 VDM VDM A . C 3 HOH 1 2001 2001 HOH HOH A . C 3 HOH 2 2002 2002 HOH HOH A . C 3 HOH 3 2003 2003 HOH HOH A . C 3 HOH 4 2004 2004 HOH HOH A . C 3 HOH 5 2005 2005 HOH HOH A . C 3 HOH 6 2006 2006 HOH HOH A . C 3 HOH 7 2007 2007 HOH HOH A . C 3 HOH 8 2008 2008 HOH HOH A . C 3 HOH 9 2009 2009 HOH HOH A . C 3 HOH 10 2010 2010 HOH HOH A . C 3 HOH 11 2011 2011 HOH HOH A . C 3 HOH 12 2012 2012 HOH HOH A . C 3 HOH 13 2013 2013 HOH HOH A . C 3 HOH 14 2014 2014 HOH HOH A . C 3 HOH 15 2015 2015 HOH HOH A . C 3 HOH 16 2016 2016 HOH HOH A . C 3 HOH 17 2017 2017 HOH HOH A . C 3 HOH 18 2018 2018 HOH HOH A . C 3 HOH 19 2019 2019 HOH HOH A . C 3 HOH 20 2020 2020 HOH HOH A . C 3 HOH 21 2021 2021 HOH HOH A . C 3 HOH 22 2022 2022 HOH HOH A . C 3 HOH 23 2023 2023 HOH HOH A . C 3 HOH 24 2024 2024 HOH HOH A . C 3 HOH 25 2025 2025 HOH HOH A . C 3 HOH 26 2026 2026 HOH HOH A . C 3 HOH 27 2027 2027 HOH HOH A . C 3 HOH 28 2028 2028 HOH HOH A . C 3 HOH 29 2029 2029 HOH HOH A . C 3 HOH 30 2030 2030 HOH HOH A . C 3 HOH 31 2031 2031 HOH HOH A . C 3 HOH 32 2032 2032 HOH HOH A . C 3 HOH 33 2033 2033 HOH HOH A . C 3 HOH 34 2034 2034 HOH HOH A . C 3 HOH 35 2035 2035 HOH HOH A . C 3 HOH 36 2036 2036 HOH HOH A . C 3 HOH 37 2037 2037 HOH HOH A . C 3 HOH 38 2038 2038 HOH HOH A . C 3 HOH 39 2039 2039 HOH HOH A . C 3 HOH 40 2040 2040 HOH HOH A . C 3 HOH 41 2041 2041 HOH HOH A . C 3 HOH 42 2042 2042 HOH HOH A . C 3 HOH 43 2043 2043 HOH HOH A . C 3 HOH 44 2044 2044 HOH HOH A . C 3 HOH 45 2045 2045 HOH HOH A . C 3 HOH 46 2046 2046 HOH HOH A . C 3 HOH 47 2047 2047 HOH HOH A . C 3 HOH 48 2048 2048 HOH HOH A . C 3 HOH 49 2049 2049 HOH HOH A . C 3 HOH 50 2050 2050 HOH HOH A . C 3 HOH 51 2051 2051 HOH HOH A . C 3 HOH 52 2052 2052 HOH HOH A . C 3 HOH 53 2053 2053 HOH HOH A . C 3 HOH 54 2054 2054 HOH HOH A . C 3 HOH 55 2055 2055 HOH HOH A . C 3 HOH 56 2056 2056 HOH HOH A . C 3 HOH 57 2057 2057 HOH HOH A . C 3 HOH 58 2058 2058 HOH HOH A . C 3 HOH 59 2059 2059 HOH HOH A . C 3 HOH 60 2060 2060 HOH HOH A . C 3 HOH 61 2061 2061 HOH HOH A . C 3 HOH 62 2062 2062 HOH HOH A . C 3 HOH 63 2063 2063 HOH HOH A . C 3 HOH 64 2064 2064 HOH HOH A . C 3 HOH 65 2065 2065 HOH HOH A . C 3 HOH 66 2066 2066 HOH HOH A . C 3 HOH 67 2067 2067 HOH HOH A . C 3 HOH 68 2068 2068 HOH HOH A . C 3 HOH 69 2069 2069 HOH HOH A . C 3 HOH 70 2070 2070 HOH HOH A . C 3 HOH 71 2071 2071 HOH HOH A . C 3 HOH 72 2072 2072 HOH HOH A . C 3 HOH 73 2073 2073 HOH HOH A . C 3 HOH 74 2074 2074 HOH HOH A . C 3 HOH 75 2075 2075 HOH HOH A . C 3 HOH 76 2076 2076 HOH HOH A . C 3 HOH 77 2077 2077 HOH HOH A . C 3 HOH 78 2078 2078 HOH HOH A . C 3 HOH 79 2079 2079 HOH HOH A . C 3 HOH 80 2080 2080 HOH HOH A . C 3 HOH 81 2081 2081 HOH HOH A . C 3 HOH 82 2082 2082 HOH HOH A . C 3 HOH 83 2083 2083 HOH HOH A . C 3 HOH 84 2084 2084 HOH HOH A . C 3 HOH 85 2085 2085 HOH HOH A . C 3 HOH 86 2086 2086 HOH HOH A . C 3 HOH 87 2087 2087 HOH HOH A . C 3 HOH 88 2088 2088 HOH HOH A . C 3 HOH 89 2089 2089 HOH HOH A . C 3 HOH 90 2090 2090 HOH HOH A . C 3 HOH 91 2091 2091 HOH HOH A . C 3 HOH 92 2092 2092 HOH HOH A . C 3 HOH 93 2093 2093 HOH HOH A . C 3 HOH 94 2094 2094 HOH HOH A . C 3 HOH 95 2095 2095 HOH HOH A . C 3 HOH 96 2096 2096 HOH HOH A . C 3 HOH 97 2097 2097 HOH HOH A . C 3 HOH 98 2098 2098 HOH HOH A . C 3 HOH 99 2099 2099 HOH HOH A . C 3 HOH 100 2100 2100 HOH HOH A . C 3 HOH 101 2101 2101 HOH HOH A . C 3 HOH 102 2102 2102 HOH HOH A . C 3 HOH 103 2103 2103 HOH HOH A . C 3 HOH 104 2104 2104 HOH HOH A . C 3 HOH 105 2105 2105 HOH HOH A . C 3 HOH 106 2106 2106 HOH HOH A . C 3 HOH 107 2107 2107 HOH HOH A . C 3 HOH 108 2108 2108 HOH HOH A . C 3 HOH 109 2109 2109 HOH HOH A . C 3 HOH 110 2110 2110 HOH HOH A . C 3 HOH 111 2111 2111 HOH HOH A . C 3 HOH 112 2112 2112 HOH HOH A . C 3 HOH 113 2113 2113 HOH HOH A . C 3 HOH 114 2114 2114 HOH HOH A . C 3 HOH 115 2115 2115 HOH HOH A . C 3 HOH 116 2116 2116 HOH HOH A . C 3 HOH 117 2117 2117 HOH HOH A . C 3 HOH 118 2118 2118 HOH HOH A . C 3 HOH 119 2119 2119 HOH HOH A . C 3 HOH 120 2120 2120 HOH HOH A . C 3 HOH 121 2121 2121 HOH HOH A . C 3 HOH 122 2122 2122 HOH HOH A . C 3 HOH 123 2123 2123 HOH HOH A . C 3 HOH 124 2124 2124 HOH HOH A . C 3 HOH 125 2125 2125 HOH HOH A . C 3 HOH 126 2126 2126 HOH HOH A . C 3 HOH 127 2127 2127 HOH HOH A . C 3 HOH 128 2128 2128 HOH HOH A . C 3 HOH 129 2129 2129 HOH HOH A . C 3 HOH 130 2130 2130 HOH HOH A . C 3 HOH 131 2131 2131 HOH HOH A . C 3 HOH 132 2132 2132 HOH HOH A . C 3 HOH 133 2133 2133 HOH HOH A . C 3 HOH 134 2134 2134 HOH HOH A . C 3 HOH 135 2135 2135 HOH HOH A . C 3 HOH 136 2136 2136 HOH HOH A . C 3 HOH 137 2137 2137 HOH HOH A . C 3 HOH 138 2138 2138 HOH HOH A . C 3 HOH 139 2139 2139 HOH HOH A . C 3 HOH 140 2140 2140 HOH HOH A . C 3 HOH 141 2141 2141 HOH HOH A . C 3 HOH 142 2142 2142 HOH HOH A . C 3 HOH 143 2143 2143 HOH HOH A . C 3 HOH 144 2144 2144 HOH HOH A . C 3 HOH 145 2145 2145 HOH HOH A . C 3 HOH 146 2146 2146 HOH HOH A . C 3 HOH 147 2147 2147 HOH HOH A . C 3 HOH 148 2148 2148 HOH HOH A . C 3 HOH 149 2149 2149 HOH HOH A . C 3 HOH 150 2150 2150 HOH HOH A . C 3 HOH 151 2151 2151 HOH HOH A . C 3 HOH 152 2152 2152 HOH HOH A . C 3 HOH 153 2153 2153 HOH HOH A . C 3 HOH 154 2154 2154 HOH HOH A . C 3 HOH 155 2155 2155 HOH HOH A . C 3 HOH 156 2156 2156 HOH HOH A . C 3 HOH 157 2157 2157 HOH HOH A . C 3 HOH 158 2158 2158 HOH HOH A . C 3 HOH 159 2159 2159 HOH HOH A . C 3 HOH 160 2160 2160 HOH HOH A . C 3 HOH 161 2161 2161 HOH HOH A . C 3 HOH 162 2162 2162 HOH HOH A . C 3 HOH 163 2163 2163 HOH HOH A . C 3 HOH 164 2164 2164 HOH HOH A . C 3 HOH 165 2165 2165 HOH HOH A . C 3 HOH 166 2166 2166 HOH HOH A . C 3 HOH 167 2167 2167 HOH HOH A . C 3 HOH 168 2168 2168 HOH HOH A . C 3 HOH 169 2169 2169 HOH HOH A . C 3 HOH 170 2170 2170 HOH HOH A . C 3 HOH 171 2171 2171 HOH HOH A . C 3 HOH 172 2172 2172 HOH HOH A . C 3 HOH 173 2173 2173 HOH HOH A . C 3 HOH 174 2174 2174 HOH HOH A . C 3 HOH 175 2175 2175 HOH HOH A . C 3 HOH 176 2176 2176 HOH HOH A . C 3 HOH 177 2177 2177 HOH HOH A . C 3 HOH 178 2178 2178 HOH HOH A . C 3 HOH 179 2179 2179 HOH HOH A . C 3 HOH 180 2180 2180 HOH HOH A . C 3 HOH 181 2181 2181 HOH HOH A . C 3 HOH 182 2182 2182 HOH HOH A . C 3 HOH 183 2183 2183 HOH HOH A . C 3 HOH 184 2184 2184 HOH HOH A . C 3 HOH 185 2185 2185 HOH HOH A . C 3 HOH 186 2186 2186 HOH HOH A . C 3 HOH 187 2187 2187 HOH HOH A . C 3 HOH 188 2188 2188 HOH HOH A . C 3 HOH 189 2189 2189 HOH HOH A . C 3 HOH 190 2190 2190 HOH HOH A . C 3 HOH 191 2191 2191 HOH HOH A . C 3 HOH 192 2192 2192 HOH HOH A . C 3 HOH 193 2193 2193 HOH HOH A . C 3 HOH 194 2194 2194 HOH HOH A . C 3 HOH 195 2195 2195 HOH HOH A . C 3 HOH 196 2196 2196 HOH HOH A . C 3 HOH 197 2197 2197 HOH HOH A . C 3 HOH 198 2198 2198 HOH HOH A . C 3 HOH 199 2199 2199 HOH HOH A . C 3 HOH 200 2200 2200 HOH HOH A . C 3 HOH 201 2201 2201 HOH HOH A . C 3 HOH 202 2202 2202 HOH HOH A . C 3 HOH 203 2203 2203 HOH HOH A . C 3 HOH 204 2204 2204 HOH HOH A . C 3 HOH 205 2205 2205 HOH HOH A . C 3 HOH 206 2206 2206 HOH HOH A . C 3 HOH 207 2207 2207 HOH HOH A . C 3 HOH 208 2208 2208 HOH HOH A . C 3 HOH 209 2209 2209 HOH HOH A . C 3 HOH 210 2210 2210 HOH HOH A . C 3 HOH 211 2211 2211 HOH HOH A . C 3 HOH 212 2212 2212 HOH HOH A . C 3 HOH 213 2213 2213 HOH HOH A . C 3 HOH 214 2214 2214 HOH HOH A . C 3 HOH 215 2215 2215 HOH HOH A . C 3 HOH 216 2216 2216 HOH HOH A . C 3 HOH 217 2217 2217 HOH HOH A . C 3 HOH 218 2218 2218 HOH HOH A . C 3 HOH 219 2219 2219 HOH HOH A . C 3 HOH 220 2220 2220 HOH HOH A . C 3 HOH 221 2221 2221 HOH HOH A . C 3 HOH 222 2222 2222 HOH HOH A . C 3 HOH 223 2223 2223 HOH HOH A . C 3 HOH 224 2224 2224 HOH HOH A . C 3 HOH 225 2225 2225 HOH HOH A . C 3 HOH 226 2226 2226 HOH HOH A . C 3 HOH 227 2227 2227 HOH HOH A . C 3 HOH 228 2228 2228 HOH HOH A . C 3 HOH 229 2229 2229 HOH HOH A . C 3 HOH 230 2230 2230 HOH HOH A . C 3 HOH 231 2231 2231 HOH HOH A . C 3 HOH 232 2232 2232 HOH HOH A . C 3 HOH 233 2233 2233 HOH HOH A . C 3 HOH 234 2234 2234 HOH HOH A . C 3 HOH 235 2235 2235 HOH HOH A . C 3 HOH 236 2236 2236 HOH HOH A . C 3 HOH 237 2237 2237 HOH HOH A . C 3 HOH 238 2238 2238 HOH HOH A . C 3 HOH 239 2239 2239 HOH HOH A . C 3 HOH 240 2240 2240 HOH HOH A . C 3 HOH 241 2241 2241 HOH HOH A . C 3 HOH 242 2242 2242 HOH HOH A . C 3 HOH 243 2243 2243 HOH HOH A . C 3 HOH 244 2244 2244 HOH HOH A . C 3 HOH 245 2245 2245 HOH HOH A . C 3 HOH 246 2246 2246 HOH HOH A . C 3 HOH 247 2247 2247 HOH HOH A . C 3 HOH 248 2248 2248 HOH HOH A . C 3 HOH 249 2249 2249 HOH HOH A . C 3 HOH 250 2250 2250 HOH HOH A . C 3 HOH 251 2251 2251 HOH HOH A . C 3 HOH 252 2252 2252 HOH HOH A . C 3 HOH 253 2253 2253 HOH HOH A . C 3 HOH 254 2254 2254 HOH HOH A . C 3 HOH 255 2255 2255 HOH HOH A . C 3 HOH 256 2256 2256 HOH HOH A . C 3 HOH 257 2257 2257 HOH HOH A . C 3 HOH 258 2258 2258 HOH HOH A . C 3 HOH 259 2259 2259 HOH HOH A . C 3 HOH 260 2260 2260 HOH HOH A . C 3 HOH 261 2261 2261 HOH HOH A . C 3 HOH 262 2262 2262 HOH HOH A . C 3 HOH 263 2263 2263 HOH HOH A . C 3 HOH 264 2264 2264 HOH HOH A . C 3 HOH 265 2265 2265 HOH HOH A . C 3 HOH 266 2266 2266 HOH HOH A . C 3 HOH 267 2267 2267 HOH HOH A . C 3 HOH 268 2268 2268 HOH HOH A . C 3 HOH 269 2269 2269 HOH HOH A . C 3 HOH 270 2270 2270 HOH HOH A . C 3 HOH 271 2271 2271 HOH HOH A . C 3 HOH 272 2272 2272 HOH HOH A . C 3 HOH 273 2273 2273 HOH HOH A . C 3 HOH 274 2274 2274 HOH HOH A . C 3 HOH 275 2275 2275 HOH HOH A . C 3 HOH 276 2276 2276 HOH HOH A . C 3 HOH 277 2277 2277 HOH HOH A . C 3 HOH 278 2278 2278 HOH HOH A . C 3 HOH 279 2279 2279 HOH HOH A . C 3 HOH 280 2280 2280 HOH HOH A . C 3 HOH 281 2281 2281 HOH HOH A . C 3 HOH 282 2282 2282 HOH HOH A . C 3 HOH 283 2283 2283 HOH HOH A . C 3 HOH 284 2284 2284 HOH HOH A . C 3 HOH 285 2285 2285 HOH HOH A . C 3 HOH 286 2286 2286 HOH HOH A . C 3 HOH 287 2287 2287 HOH HOH A . C 3 HOH 288 2288 2288 HOH HOH A . C 3 HOH 289 2289 2289 HOH HOH A . C 3 HOH 290 2290 2290 HOH HOH A . C 3 HOH 291 2291 2291 HOH HOH A . C 3 HOH 292 2292 2292 HOH HOH A . C 3 HOH 293 2293 2293 HOH HOH A . C 3 HOH 294 2294 2294 HOH HOH A . C 3 HOH 295 2295 2295 HOH HOH A . C 3 HOH 296 2296 2296 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 44 A MSE 74 ? MET SELENOMETHIONINE 2 A MSE 51 A MSE 81 ? MET SELENOMETHIONINE 3 A MSE 135 A MSE 165 ? MET SELENOMETHIONINE 4 A MSE 150 A MSE 180 ? MET SELENOMETHIONINE 5 A MSE 184 A MSE 214 ? MET SELENOMETHIONINE 6 A MSE 204 A MSE 234 ? MET SELENOMETHIONINE 7 A MSE 212 A MSE 242 ? MET SELENOMETHIONINE 8 A MSE 288 A MSE 318 ? MET SELENOMETHIONINE 9 A MSE 311 A MSE 341 ? MET SELENOMETHIONINE 10 A MSE 314 A MSE 344 ? MET SELENOMETHIONINE 11 A MSE 330 A MSE 360 ? MET SELENOMETHIONINE 12 A MSE 392 A MSE 422 ? MET SELENOMETHIONINE 13 A MSE 444 A MSE 474 ? MET SELENOMETHIONINE 14 A MSE 498 A MSE 528 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-02-13 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 autoSHARP phasing . ? 4 # _pdbx_entry_details.entry_id 2JF4 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE FIRST 30 RESIDUES CORRESPOND TO A SIGNAL PEPTIDE THAT IS PREDICTED TO HAVE CLEAVED DURING EXPRESSION OF THE PROTEIN. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 158 ? ? -65.54 -70.49 2 1 SER A 206 ? ? -115.72 -142.70 3 1 LYS A 255 ? ? 51.99 -117.87 4 1 SER A 280 ? ? -142.90 44.88 5 1 ARG A 328 ? ? -144.52 59.62 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2102 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.96 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 134 ? CG ? A GLU 104 CG 2 1 Y 1 A GLU 134 ? CD ? A GLU 104 CD 3 1 Y 1 A GLU 134 ? OE1 ? A GLU 104 OE1 4 1 Y 1 A GLU 134 ? OE2 ? A GLU 104 OE2 5 1 Y 1 A LYS 135 ? CG ? A LYS 105 CG 6 1 Y 1 A LYS 135 ? CD ? A LYS 105 CD 7 1 Y 1 A LYS 135 ? CE ? A LYS 105 CE 8 1 Y 1 A LYS 135 ? NZ ? A LYS 105 NZ 9 1 Y 1 A LYS 176 ? CD ? A LYS 146 CD 10 1 Y 1 A LYS 176 ? CE ? A LYS 146 CE 11 1 Y 1 A LYS 176 ? NZ ? A LYS 146 NZ 12 1 Y 1 A LYS 535 ? CB ? A LYS 505 CB 13 1 Y 1 A LYS 535 ? CG ? A LYS 505 CG 14 1 Y 1 A LYS 535 ? CD ? A LYS 505 CD 15 1 Y 1 A LYS 535 ? CE ? A LYS 505 CE 16 1 Y 1 A LYS 535 ? NZ ? A LYS 505 NZ 17 1 Y 1 A GLU 536 ? CB ? A GLU 506 CB 18 1 Y 1 A GLU 536 ? CG ? A GLU 506 CG 19 1 Y 1 A GLU 536 ? CD ? A GLU 506 CD 20 1 Y 1 A GLU 536 ? OE1 ? A GLU 506 OE1 21 1 Y 1 A GLU 536 ? OE2 ? A GLU 506 OE2 22 1 Y 1 A GLN 537 ? CB ? A GLN 507 CB 23 1 Y 1 A GLN 537 ? CG ? A GLN 507 CG 24 1 Y 1 A GLN 537 ? CD ? A GLN 507 CD 25 1 Y 1 A GLN 537 ? OE1 ? A GLN 507 OE1 26 1 Y 1 A GLN 537 ? NE2 ? A GLN 507 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 31 ? A GLU 1 2 1 Y 1 A GLU 32 ? A GLU 2 3 1 Y 1 A THR 33 ? A THR 3 4 1 Y 1 A PRO 34 ? A PRO 4 5 1 Y 1 A VAL 35 ? A VAL 5 6 1 Y 1 A THR 36 ? A THR 6 7 1 Y 1 A LYS 102 ? A LYS 72 8 1 Y 1 A GLU 103 ? A GLU 73 9 1 Y 1 A GLY 104 ? A GLY 74 10 1 Y 1 A GLU 105 ? A GLU 75 11 1 Y 1 A LYS 106 ? A LYS 76 12 1 Y 1 A TYR 107 ? A TYR 77 13 1 Y 1 A VAL 108 ? A VAL 78 14 1 Y 1 A PRO 109 ? A PRO 79 15 1 Y 1 A PRO 110 ? A PRO 80 16 1 Y 1 A GLU 111 ? A GLU 81 17 1 Y 1 A GLY 112 ? A GLY 82 18 1 Y 1 A THR 548 ? A THR 518 19 1 Y 1 A VAL 549 ? A VAL 519 20 1 Y 1 A LYS 550 ? A LYS 520 21 1 Y 1 A SER 551 ? A SER 521 22 1 Y 1 A ALA 552 ? A ALA 522 23 1 Y 1 A THR 553 ? A THR 523 24 1 Y 1 A THR 554 ? A THR 524 25 1 Y 1 A GLN 555 ? A GLN 525 26 1 Y 1 A PRO 556 ? A PRO 526 27 1 Y 1 A SER 557 ? A SER 527 28 1 Y 1 A THR 558 ? A THR 528 29 1 Y 1 A LYS 559 ? A LYS 529 30 1 Y 1 A GLU 560 ? A GLU 530 31 1 Y 1 A ALA 561 ? A ALA 531 32 1 Y 1 A GLN 562 ? A GLN 532 33 1 Y 1 A PRO 563 ? A PRO 533 34 1 Y 1 A THR 564 ? A THR 534 35 1 Y 1 A PRO 565 ? A PRO 535 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(1S,2S,3R,6S)-4-(HYDROXYMETHYL)-6-{[(1S,2S,3S,4R,5R)-2,3,4-TRIHYDROXY-5-(HYDROXYMETHYL)CYCLOHEXYL]AMINO}CYCLOHEX-4-ENE-1,2,3-TRIOL' VDM 3 water HOH #