HEADER TRANSFERASE 01-JUL-07 2JIT TITLE CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN T790M MUTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 696-1022; COMPND 5 SYNONYM: RECEPTOR TYROSINE-PROTEIN KINASE ERBB-1; COMPND 6 EC: 2.7.1.112; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: EGFR 696-1022 T790M SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PACG2T; SOURCE 10 OTHER_DETAILS: EGFR 696-1022 T790M KEYWDS EGFR, T790M, KINASE, RECEPTOR, CELL CYCLE, PHOSPHORYLATION, DISEASE KEYWDS 2 MUTATION, NUCLEOTIDE-BINDING, TYROSINE-PROTEIN KINASE, ANTI- KEYWDS 3 ONCOGENE, EPIDERMAL GROWTH FACTOR, ATP-BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.-H.YUN,K.E.MENGWASSER,A.V.TOMS,M.S.WOO,H.GREULICH,K.-K.WONG, AUTHOR 2 M.MEYERSON,M.J.ECK REVDAT 3 13-DEC-23 2JIT 1 REMARK REVDAT 2 24-FEB-09 2JIT 1 VERSN REVDAT 1 22-JAN-08 2JIT 0 JRNL AUTH C.-H.YUN,K.E.MENGWASSER,A.V.TOMS,M.S.WOO,H.GREULICH,K.WONG, JRNL AUTH 2 M.MEYERSON,M.J.ECK JRNL TITL THE T790M MUTATION IN EGFR KINASE CAUSES DRUG RESISTANCE BY JRNL TITL 2 INCREASING THE AFFINITY FOR ATP. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 2070 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18227510 JRNL DOI 10.1073/PNAS.0709662105 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0026 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 14268 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 759 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 929 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4813 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.458 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4914 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6651 ; 1.311 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 604 ; 8.240 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 202 ;40.202 ;23.911 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 882 ;20.739 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;22.516 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 751 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3618 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2613 ; 0.295 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3390 ; 0.335 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 213 ; 0.202 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.212 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.424 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3042 ; 0.862 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4905 ; 1.650 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1872 ; 2.021 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1746 ; 3.582 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2JIT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1290033085. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16223 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2ITN REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES 7.5, 0.3M NACL, 21% PEG6K, REMARK 280 5MM TCEP, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.94450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.17350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.15200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.17350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.94450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.15200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, THR 790 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN B, THR 790 TO MET REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 987 REMARK 465 HIS A 988 REMARK 465 LEU A 989 REMARK 465 PRO A 990 REMARK 465 SER A 991 REMARK 465 PRO A 992 REMARK 465 THR A 993 REMARK 465 ASP A 994 REMARK 465 SER A 995 REMARK 465 ASN A 996 REMARK 465 PHE A 997 REMARK 465 TYR A 998 REMARK 465 ARG A 999 REMARK 465 ALA A 1000 REMARK 465 LEU A 1001 REMARK 465 MET A 1002 REMARK 465 ASP A 1003 REMARK 465 GLU A 1004 REMARK 465 GLU A 1005 REMARK 465 ASP A 1006 REMARK 465 MET A 1007 REMARK 465 ASP A 1008 REMARK 465 LEU A 1017 REMARK 465 ILE A 1018 REMARK 465 PRO A 1019 REMARK 465 GLN A 1020 REMARK 465 GLN A 1021 REMARK 465 GLY A 1022 REMARK 465 GLY B 696 REMARK 465 ARG B 986 REMARK 465 MET B 987 REMARK 465 HIS B 988 REMARK 465 SER B 991 REMARK 465 PRO B 992 REMARK 465 GLU B 1005 REMARK 465 ASP B 1006 REMARK 465 MET B 1007 REMARK 465 ASP B 1008 REMARK 465 ASP B 1009 REMARK 465 PRO B 1019 REMARK 465 GLN B 1020 REMARK 465 GLN B 1021 REMARK 465 GLY B 1022 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 697 CG CD OE1 OE2 REMARK 470 LYS A 754 CG CD CE NZ REMARK 470 GLU A 872 CG CD OE1 OE2 REMARK 470 ARG A 986 CG CD NE CZ NH1 NH2 REMARK 470 ASP A1009 CG OD1 OD2 REMARK 470 TYR A1016 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 697 CG CD OE1 OE2 REMARK 470 LYS B 737 CG CD CE NZ REMARK 470 LYS B 860 CG CD CE NZ REMARK 470 GLU B 865 CG CD OE1 OE2 REMARK 470 GLU B 866 CG CD OE1 OE2 REMARK 470 GLU B 872 CG CD OE1 OE2 REMARK 470 GLU B 985 CG CD OE1 OE2 REMARK 470 LEU B 989 CG CD1 CD2 REMARK 470 ASP B 994 CG OD1 OD2 REMARK 470 SER B 995 OG REMARK 470 LEU B1001 CG CD1 CD2 REMARK 470 ASP B1003 CG OD1 OD2 REMARK 470 GLU B1004 CG CD OE1 OE2 REMARK 470 VAL B1010 CG1 CG2 REMARK 470 ILE B1018 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 696 N GLY A 696 CA 0.110 REMARK 500 PRO B 733 C PRO B 733 O 0.125 REMARK 500 GLY B 873 C GLY B 873 O 0.113 REMARK 500 PRO B 877 CD PRO B 877 N 0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 748 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 697 -167.26 -118.09 REMARK 500 GLN A 701 -4.95 69.04 REMARK 500 GLU A 709 -7.42 -58.05 REMARK 500 LYS A 728 -90.62 -96.27 REMARK 500 PRO A 733 158.97 -45.21 REMARK 500 LYS A 737 56.90 -98.03 REMARK 500 ALA A 750 35.73 -88.00 REMARK 500 PRO A 794 4.66 -66.57 REMARK 500 GLU A 804 -61.95 -98.12 REMARK 500 ARG A 832 31.31 70.56 REMARK 500 ARG A 836 -2.20 61.63 REMARK 500 ASP A 837 42.22 -146.01 REMARK 500 THR A 847 145.98 -173.85 REMARK 500 PRO A 848 -9.82 -54.41 REMARK 500 ASP A 855 96.79 58.30 REMARK 500 ALA A 864 -42.43 -20.32 REMARK 500 HIS A 888 -1.34 -155.05 REMARK 500 ILE A 918 99.85 -25.17 REMARK 500 SER A 921 46.43 -80.36 REMARK 500 GLU A 922 -23.44 -173.74 REMARK 500 TRP A 951 46.01 -98.77 REMARK 500 TYR A 978 -22.05 -147.55 REMARK 500 ASP A 984 -88.18 -31.48 REMARK 500 GLU A 985 -30.15 -28.10 REMARK 500 VAL A1010 144.28 153.60 REMARK 500 ALA A1013 -23.48 160.47 REMARK 500 GLU A1015 33.28 -156.87 REMARK 500 THR B 710 22.12 -74.94 REMARK 500 GLU B 734 133.39 -38.43 REMARK 500 GLU B 736 -31.34 -27.48 REMARK 500 GLU B 749 -64.45 -149.61 REMARK 500 THR B 751 39.29 -147.02 REMARK 500 LEU B 778 20.67 -76.55 REMARK 500 LEU B 782 49.57 -98.65 REMARK 500 ASN B 808 30.25 -99.17 REMARK 500 ARG B 836 -10.04 88.36 REMARK 500 ASP B 837 45.05 -148.63 REMARK 500 PRO B 848 -6.81 -54.84 REMARK 500 HIS B 850 119.54 -161.21 REMARK 500 ALA B 859 87.05 -19.67 REMARK 500 LYS B 860 -23.57 -147.05 REMARK 500 LEU B 861 105.76 -42.38 REMARK 500 ALA B 864 -42.80 -156.81 REMARK 500 GLU B 866 108.25 -58.13 REMARK 500 GLU B 872 -122.06 -80.67 REMARK 500 TYR B 915 43.62 27.68 REMARK 500 TRP B 951 40.80 -104.41 REMARK 500 ASP B 974 67.65 -151.83 REMARK 500 ASP B 984 61.87 -179.34 REMARK 500 ASP B 994 -154.19 -120.05 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 932 0.17 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DNQ RELATED DB: PDB REMARK 900 THEORETICAL MODEL OF THE FIRST AND SECOND DOMAINS OF THE HUMAN REMARK 900 EPIDERMAL GROWTH FACTOR RECEPTOR ECTODOMAIN REMARK 900 RELATED ID: 1DNR RELATED DB: PDB REMARK 900 THEORETICAL MODEL OF THE THIRD AND FOURTH DOMAINS OF THE HUMAN REMARK 900 EPIDERMAL GROWTH FACTOR RECEPTOR ECTODOMAIN REMARK 900 RELATED ID: 1IVO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN EPIDERMAL GROWTHFACTOR REMARK 900 AND RECEPTOR EXTRACELLULAR DOMAINS. REMARK 900 RELATED ID: 1M14 RELATED DB: PDB REMARK 900 TYROSINE KINASE DOMAIN FROM EPIDERMAL GROWTH FACTOR RECEPTOR REMARK 900 RELATED ID: 1M17 RELATED DB: PDB REMARK 900 EPIDERMAL GROWTH FACTOR RECEPTOR TYROSINE KINASE DOMAINWITH 4- REMARK 900 ANILINOQUINAZOLINE INHIBITOR ERLOTINIB REMARK 900 RELATED ID: 1MOX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN EPIDERMAL GROWTH FACTOR REMARK 900 RECEPTOR(RESIDUES 1-501) IN COMPLEX WITH TGF-ALPHA REMARK 900 RELATED ID: 1NQL RELATED DB: PDB REMARK 900 STRUCTURE OF THE EXTRACELLULAR DOMAIN OF HUMAN EPIDERMALGROWTH REMARK 900 FACTOR (EGF) RECEPTOR IN AN INACTIVE (LOW PH)COMPLEX WITH EGF. REMARK 900 RELATED ID: 1XKK RELATED DB: PDB REMARK 900 EGFR KINASE DOMAIN COMPLEXED WITH A QUINAZOLINE INHIBITOR-GW572016 REMARK 900 RELATED ID: 1YY9 RELATED DB: PDB REMARK 900 STRUCTURE OF THE EXTRACELLULAR DOMAIN OF THE EPIDERMALGROWTH FACTOR REMARK 900 RECEPTOR IN COMPLEX WITH THE FAB FRAGMENT OFCETUXIMAB/ERBITUX/ IMC- REMARK 900 C225 REMARK 900 RELATED ID: 1Z9I RELATED DB: PDB REMARK 900 A STRUCTURAL MODEL FOR THE MEMBRANE-BOUND FORM OF THEJUXTAMEMBRANE REMARK 900 DOMAIN OF THE EPIDERMAL GROWTH FACTORRECEPTOR REMARK 900 RELATED ID: 2GS2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ACTIVE EGFR KINASE DOMAIN REMARK 900 RELATED ID: 2GS7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE INACTIVE EGFR KINASE DOMAIN INCOMPLEX WITH REMARK 900 AMP-PNP REMARK 900 RELATED ID: 2ITN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN G719S MUTATION IN COMPLEX REMARK 900 WITH AMP-PNP REMARK 900 RELATED ID: 2ITO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN G719S MUTATION IN COMPLEX REMARK 900 WITH IRESSA REMARK 900 RELATED ID: 2ITP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN G719S MUTATION IN COMPLEX REMARK 900 WITH AEE788 REMARK 900 RELATED ID: 2ITQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN G719S MUTATION IN COMPLEX REMARK 900 WITH AFN941 REMARK 900 RELATED ID: 2ITT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN L858R MUTATION IN COMPLEX REMARK 900 WITH AEE788 REMARK 900 RELATED ID: 2ITU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN L858R MUTATION IN COMPLEX REMARK 900 WITH AFN941 REMARK 900 RELATED ID: 2ITV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN L858R MUTATION IN COMPLEX REMARK 900 WITH AMP-PNP REMARK 900 RELATED ID: 2ITW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AFN941 REMARK 900 RELATED ID: 2ITX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AMP-PNP REMARK 900 RELATED ID: 2ITY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH IRESSA REMARK 900 RELATED ID: 2ITZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN L858R MUTATION IN COMPLEX REMARK 900 WITH IRESSA REMARK 900 RELATED ID: 2J5E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AN REMARK 900 IRREVERSIBLE INHIBITOR 13- JAB REMARK 900 RELATED ID: 2J5F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AN REMARK 900 IRREVERSIBLE INHIBITOR 34- JAB REMARK 900 RELATED ID: 2J6M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AEE788 REMARK 900 RELATED ID: 2JIU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN T790M MUTATION IN COMPLEX REMARK 900 AEE788 REMARK 900 RELATED ID: 2JIV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN T790M MUTATION IN COMPEX REMARK 900 WITH HKI-272 REMARK 999 REMARK 999 SEQUENCE REMARK 999 T790M MUTATION DBREF 2JIT A 696 1022 UNP P00533 EGFR_HUMAN 696 1022 DBREF 2JIT B 696 1022 UNP P00533 EGFR_HUMAN 696 1022 SEQADV 2JIT MET A 790 UNP P00533 THR 790 ENGINEERED MUTATION SEQADV 2JIT MET B 790 UNP P00533 THR 790 ENGINEERED MUTATION SEQRES 1 A 327 GLY GLU ALA PRO ASN GLN ALA LEU LEU ARG ILE LEU LYS SEQRES 2 A 327 GLU THR GLU PHE LYS LYS ILE LYS VAL LEU GLY SER GLY SEQRES 3 A 327 ALA PHE GLY THR VAL TYR LYS GLY LEU TRP ILE PRO GLU SEQRES 4 A 327 GLY GLU LYS VAL LYS ILE PRO VAL ALA ILE LYS GLU LEU SEQRES 5 A 327 ARG GLU ALA THR SER PRO LYS ALA ASN LYS GLU ILE LEU SEQRES 6 A 327 ASP GLU ALA TYR VAL MET ALA SER VAL ASP ASN PRO HIS SEQRES 7 A 327 VAL CYS ARG LEU LEU GLY ILE CYS LEU THR SER THR VAL SEQRES 8 A 327 GLN LEU ILE MET GLN LEU MET PRO PHE GLY CYS LEU LEU SEQRES 9 A 327 ASP TYR VAL ARG GLU HIS LYS ASP ASN ILE GLY SER GLN SEQRES 10 A 327 TYR LEU LEU ASN TRP CYS VAL GLN ILE ALA LYS GLY MET SEQRES 11 A 327 ASN TYR LEU GLU ASP ARG ARG LEU VAL HIS ARG ASP LEU SEQRES 12 A 327 ALA ALA ARG ASN VAL LEU VAL LYS THR PRO GLN HIS VAL SEQRES 13 A 327 LYS ILE THR ASP PHE GLY LEU ALA LYS LEU LEU GLY ALA SEQRES 14 A 327 GLU GLU LYS GLU TYR HIS ALA GLU GLY GLY LYS VAL PRO SEQRES 15 A 327 ILE LYS TRP MET ALA LEU GLU SER ILE LEU HIS ARG ILE SEQRES 16 A 327 TYR THR HIS GLN SER ASP VAL TRP SER TYR GLY VAL THR SEQRES 17 A 327 VAL TRP GLU LEU MET THR PHE GLY SER LYS PRO TYR ASP SEQRES 18 A 327 GLY ILE PRO ALA SER GLU ILE SER SER ILE LEU GLU LYS SEQRES 19 A 327 GLY GLU ARG LEU PRO GLN PRO PRO ILE CYS THR ILE ASP SEQRES 20 A 327 VAL TYR MET ILE MET VAL LYS CYS TRP MET ILE ASP ALA SEQRES 21 A 327 ASP SER ARG PRO LYS PHE ARG GLU LEU ILE ILE GLU PHE SEQRES 22 A 327 SER LYS MET ALA ARG ASP PRO GLN ARG TYR LEU VAL ILE SEQRES 23 A 327 GLN GLY ASP GLU ARG MET HIS LEU PRO SER PRO THR ASP SEQRES 24 A 327 SER ASN PHE TYR ARG ALA LEU MET ASP GLU GLU ASP MET SEQRES 25 A 327 ASP ASP VAL VAL ASP ALA ASP GLU TYR LEU ILE PRO GLN SEQRES 26 A 327 GLN GLY SEQRES 1 B 327 GLY GLU ALA PRO ASN GLN ALA LEU LEU ARG ILE LEU LYS SEQRES 2 B 327 GLU THR GLU PHE LYS LYS ILE LYS VAL LEU GLY SER GLY SEQRES 3 B 327 ALA PHE GLY THR VAL TYR LYS GLY LEU TRP ILE PRO GLU SEQRES 4 B 327 GLY GLU LYS VAL LYS ILE PRO VAL ALA ILE LYS GLU LEU SEQRES 5 B 327 ARG GLU ALA THR SER PRO LYS ALA ASN LYS GLU ILE LEU SEQRES 6 B 327 ASP GLU ALA TYR VAL MET ALA SER VAL ASP ASN PRO HIS SEQRES 7 B 327 VAL CYS ARG LEU LEU GLY ILE CYS LEU THR SER THR VAL SEQRES 8 B 327 GLN LEU ILE MET GLN LEU MET PRO PHE GLY CYS LEU LEU SEQRES 9 B 327 ASP TYR VAL ARG GLU HIS LYS ASP ASN ILE GLY SER GLN SEQRES 10 B 327 TYR LEU LEU ASN TRP CYS VAL GLN ILE ALA LYS GLY MET SEQRES 11 B 327 ASN TYR LEU GLU ASP ARG ARG LEU VAL HIS ARG ASP LEU SEQRES 12 B 327 ALA ALA ARG ASN VAL LEU VAL LYS THR PRO GLN HIS VAL SEQRES 13 B 327 LYS ILE THR ASP PHE GLY LEU ALA LYS LEU LEU GLY ALA SEQRES 14 B 327 GLU GLU LYS GLU TYR HIS ALA GLU GLY GLY LYS VAL PRO SEQRES 15 B 327 ILE LYS TRP MET ALA LEU GLU SER ILE LEU HIS ARG ILE SEQRES 16 B 327 TYR THR HIS GLN SER ASP VAL TRP SER TYR GLY VAL THR SEQRES 17 B 327 VAL TRP GLU LEU MET THR PHE GLY SER LYS PRO TYR ASP SEQRES 18 B 327 GLY ILE PRO ALA SER GLU ILE SER SER ILE LEU GLU LYS SEQRES 19 B 327 GLY GLU ARG LEU PRO GLN PRO PRO ILE CYS THR ILE ASP SEQRES 20 B 327 VAL TYR MET ILE MET VAL LYS CYS TRP MET ILE ASP ALA SEQRES 21 B 327 ASP SER ARG PRO LYS PHE ARG GLU LEU ILE ILE GLU PHE SEQRES 22 B 327 SER LYS MET ALA ARG ASP PRO GLN ARG TYR LEU VAL ILE SEQRES 23 B 327 GLN GLY ASP GLU ARG MET HIS LEU PRO SER PRO THR ASP SEQRES 24 B 327 SER ASN PHE TYR ARG ALA LEU MET ASP GLU GLU ASP MET SEQRES 25 B 327 ASP ASP VAL VAL ASP ALA ASP GLU TYR LEU ILE PRO GLN SEQRES 26 B 327 GLN GLY FORMUL 3 HOH *73(H2 O) HELIX 1 1 LYS A 754 VAL A 769 1 16 HELIX 2 2 CYS A 797 LYS A 806 1 10 HELIX 3 3 GLY A 810 ARG A 831 1 22 HELIX 4 4 ALA A 839 ARG A 841 5 3 HELIX 5 5 PRO A 877 MET A 881 5 5 HELIX 6 6 ALA A 882 HIS A 888 1 7 HELIX 7 7 THR A 892 THR A 909 1 18 HELIX 8 8 GLU A 922 LYS A 929 1 8 HELIX 9 9 THR A 940 TRP A 951 1 12 HELIX 10 10 ASP A 954 ARG A 958 5 5 HELIX 11 11 LYS A 960 ASP A 974 1 15 HELIX 12 12 PRO A 975 TYR A 978 5 4 HELIX 13 13 LYS B 708 THR B 710 5 3 HELIX 14 14 SER B 752 VAL B 769 1 18 HELIX 15 15 CYS B 797 HIS B 805 1 9 HELIX 16 16 GLY B 810 ARG B 831 1 22 HELIX 17 17 ALA B 839 ARG B 841 5 3 HELIX 18 18 PRO B 877 MET B 881 5 5 HELIX 19 19 ALA B 882 ARG B 889 1 8 HELIX 20 20 THR B 892 THR B 909 1 18 HELIX 21 21 PRO B 919 GLY B 930 1 12 HELIX 22 22 THR B 940 TRP B 951 1 12 HELIX 23 23 ASP B 954 ARG B 958 5 5 HELIX 24 24 LYS B 960 ARG B 973 1 14 HELIX 25 25 ASP B 974 LEU B 979 1 6 HELIX 26 26 SER B 995 LEU B 1001 1 7 HELIX 27 27 ASP B 1012 ILE B 1018 1 7 SHEET 1 AA 5 PHE A 712 GLY A 719 0 SHEET 2 AA 5 THR A 725 TRP A 731 -1 O VAL A 726 N LEU A 718 SHEET 3 AA 5 ILE A 740 GLU A 746 -1 O ILE A 740 N TRP A 731 SHEET 4 AA 5 VAL A 786 GLN A 791 -1 O LEU A 788 N LYS A 745 SHEET 5 AA 5 LEU A 777 LEU A 782 -1 N LEU A 778 O ILE A 789 SHEET 1 AB 2 VAL A 843 THR A 847 0 SHEET 2 AB 2 HIS A 850 ILE A 853 -1 O HIS A 850 N THR A 847 SHEET 1 BA 5 PHE B 712 SER B 720 0 SHEET 2 BA 5 THR B 725 TRP B 731 -1 O VAL B 726 N LEU B 718 SHEET 3 BA 5 ILE B 740 GLU B 746 -1 O ILE B 740 N TRP B 731 SHEET 4 BA 5 GLN B 787 GLN B 791 -1 O LEU B 788 N LYS B 745 SHEET 5 BA 5 LEU B 777 CYS B 781 -1 N LEU B 778 O ILE B 789 SHEET 1 BB 2 VAL B 843 THR B 847 0 SHEET 2 BB 2 HIS B 850 ILE B 853 -1 O HIS B 850 N LYS B 846 CRYST1 53.889 90.304 164.347 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018557 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011074 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006085 0.00000