data_2JQ1 # _entry.id 2JQ1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2JQ1 pdb_00002jq1 10.2210/pdb2jq1/pdb RCSB RCSB100145 ? ? WWPDB D_1000100145 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-06-03 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-09 4 'Structure model' 1 3 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site 8 4 'Structure model' chem_comp_atom 9 4 'Structure model' chem_comp_bond 10 4 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 9 4 'Structure model' '_pdbx_database_status.deposit_site' # _pdbx_database_status.deposit_site RCSB _pdbx_database_status.entry_id 2JQ1 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-05-25 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2JQ0 PHYLLOSEPTIN-1 unspecified PDB 2JPY PHYLLOSEPTIN-2 unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Resende, J.M.' 1 'Mendonca Moraes, C.' 2 'Almeida, F.C.L.' 3 'Prates, M.V.' 4 'Cesar, A.' 5 'Valente, A.' 6 'Bemquerer, M.P.' 7 'Pilo-Veloso, D.' 8 'Bechinger, B.' 9 # _citation.id primary _citation.title ;Solution NMR structures of the antimicrobial peptides phylloseptin-1, -2, and -3 and biological activity: The role of charges and hydrogen bonding interactions in stabilizing helix conformations ; _citation.journal_abbrev Peptides _citation.journal_volume 29 _citation.page_first 1633 _citation.page_last 1644 _citation.year 2008 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 0196-9781 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18656510 _citation.pdbx_database_id_DOI 10.1016/j.peptides.2008.06.022 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Resende, J.M.' 1 ? primary 'Moraes, C.M.' 2 ? primary 'Prates, M.V.' 3 ? primary 'Cesar, A.' 4 ? primary 'Almeida, F.C.' 5 ? primary 'Mundim, N.C.' 6 ? primary 'Valente, A.P.' 7 ? primary 'Bemquerer, M.P.' 8 ? primary 'Pilo-Veloso, D.' 9 ? primary 'Bechinger, B.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description Phylloseptin-3 _entity.formula_weight 1945.249 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name PS-3 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'FLSLIPHAINAVSALANHG(NH2)' _entity_poly.pdbx_seq_one_letter_code_can FLSLIPHAINAVSALANHGX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 LEU n 1 3 SER n 1 4 LEU n 1 5 ILE n 1 6 PRO n 1 7 HIS n 1 8 ALA n 1 9 ILE n 1 10 ASN n 1 11 ALA n 1 12 VAL n 1 13 SER n 1 14 ALA n 1 15 LEU n 1 16 ALA n 1 17 ASN n 1 18 HIS n 1 19 GLY n 1 20 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;The peptide was synthesized by solid-phase synthesis using Fmoc chemistry. The peptide is an antimicrobial peptide that is naturally found from the skin secretion of Phyllomedusa hypochondrialis (Orange-legged leaf frog), a frog species found in Brazilian southeast Atlantic Forest. ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 1 1 PHE PHE A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 HIS 7 7 7 HIS HIS A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 HIS 18 18 18 HIS HIS A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 NH2 20 20 20 NH2 NH2 A . n # _cell.entry_id 2JQ1 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JQ1 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2JQ1 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2JQ1 _struct.title Phylloseptin-3 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JQ1 _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' _struct_keywords.text 'alpha-helix, amphipathic character, C-Terminal Carboxyamidation, ANTIMICROBIAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PHYL3_PHYHY _struct_ref.pdbx_db_accession P84568 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code FLSLIPHAINAVSALANHG _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JQ1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 19 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P84568 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 19 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 19 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id LEU _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 4 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 16 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id LEU _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 4 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 16 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 19 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id NH2 _struct_conn.ptnr2_label_seq_id 20 _struct_conn.ptnr2_label_atom_id N _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 19 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NH2 _struct_conn.ptnr2_auth_seq_id 20 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.306 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NH2 _struct_site.pdbx_auth_seq_id 20 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE NH2 A 20' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id GLY _struct_site_gen.label_asym_id A _struct_site_gen.label_seq_id 19 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id GLY _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 19 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 4 ? ? -140.05 18.66 2 3 SER A 3 ? ? -56.61 -178.46 3 3 LEU A 4 ? ? -133.17 -53.31 4 4 SER A 3 ? ? -160.47 45.68 5 5 LEU A 2 ? ? -139.56 -63.93 6 5 LEU A 4 ? ? -145.76 -47.48 7 6 LEU A 4 ? ? -138.69 -42.13 8 7 LEU A 2 ? ? -169.75 83.91 9 7 SER A 3 ? ? -166.37 74.05 10 7 LEU A 4 ? ? -143.43 -44.50 11 9 LEU A 4 ? ? -158.96 -42.70 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2JQ1 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2JQ1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # _pdbx_nmr_sample_details.contents '4.0 mM Phylloseptin-3, trifluoroethanol/water (60%/40%)' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system 'trifluoroethanol/water (60%/40%)' # _pdbx_nmr_exptl_sample.component Phylloseptin-3 _pdbx_nmr_exptl_sample.concentration 4.0 _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H TOCSY' 1 2 1 '2D 1H-1H NOESY' 1 3 1 '2D 1H-13C HSQC' 1 4 1 '2D 1H-15N HSQC' # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2JQ1 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 179 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 116 _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count 22 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 41 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # _pdbx_nmr_refine.entry_id 2JQ1 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection XwinNMR ? 1 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 2 'Johnson, One Moon Scientific' 'chemical shift assignment' NMRView 5.0.4 3 'Johnson, One Moon Scientific' 'data analysis' NMRView 5.0.4 4 'Schwieters, Kuszewski, Tjandra and Clore' 'geometry optimization' 'X-PLOR NIH' 2.17.0 5 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' 'X-PLOR NIH' 2.17.0 6 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' 2.17.0 7 'Koradi, Billeter and Wuthrich' 'data analysis' MOLMOL 2k.2 8 'Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Th' 'data analysis' Procheck 3.5.4 9 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 GLY N N N N 31 GLY CA C N N 32 GLY C C N N 33 GLY O O N N 34 GLY OXT O N N 35 GLY H H N N 36 GLY H2 H N N 37 GLY HA2 H N N 38 GLY HA3 H N N 39 GLY HXT H N N 40 HIS N N N N 41 HIS CA C N S 42 HIS C C N N 43 HIS O O N N 44 HIS CB C N N 45 HIS CG C Y N 46 HIS ND1 N Y N 47 HIS CD2 C Y N 48 HIS CE1 C Y N 49 HIS NE2 N Y N 50 HIS OXT O N N 51 HIS H H N N 52 HIS H2 H N N 53 HIS HA H N N 54 HIS HB2 H N N 55 HIS HB3 H N N 56 HIS HD1 H N N 57 HIS HD2 H N N 58 HIS HE1 H N N 59 HIS HE2 H N N 60 HIS HXT H N N 61 ILE N N N N 62 ILE CA C N S 63 ILE C C N N 64 ILE O O N N 65 ILE CB C N S 66 ILE CG1 C N N 67 ILE CG2 C N N 68 ILE CD1 C N N 69 ILE OXT O N N 70 ILE H H N N 71 ILE H2 H N N 72 ILE HA H N N 73 ILE HB H N N 74 ILE HG12 H N N 75 ILE HG13 H N N 76 ILE HG21 H N N 77 ILE HG22 H N N 78 ILE HG23 H N N 79 ILE HD11 H N N 80 ILE HD12 H N N 81 ILE HD13 H N N 82 ILE HXT H N N 83 LEU N N N N 84 LEU CA C N S 85 LEU C C N N 86 LEU O O N N 87 LEU CB C N N 88 LEU CG C N N 89 LEU CD1 C N N 90 LEU CD2 C N N 91 LEU OXT O N N 92 LEU H H N N 93 LEU H2 H N N 94 LEU HA H N N 95 LEU HB2 H N N 96 LEU HB3 H N N 97 LEU HG H N N 98 LEU HD11 H N N 99 LEU HD12 H N N 100 LEU HD13 H N N 101 LEU HD21 H N N 102 LEU HD22 H N N 103 LEU HD23 H N N 104 LEU HXT H N N 105 NH2 N N N N 106 NH2 HN1 H N N 107 NH2 HN2 H N N 108 PHE N N N N 109 PHE CA C N S 110 PHE C C N N 111 PHE O O N N 112 PHE CB C N N 113 PHE CG C Y N 114 PHE CD1 C Y N 115 PHE CD2 C Y N 116 PHE CE1 C Y N 117 PHE CE2 C Y N 118 PHE CZ C Y N 119 PHE OXT O N N 120 PHE H H N N 121 PHE H2 H N N 122 PHE HA H N N 123 PHE HB2 H N N 124 PHE HB3 H N N 125 PHE HD1 H N N 126 PHE HD2 H N N 127 PHE HE1 H N N 128 PHE HE2 H N N 129 PHE HZ H N N 130 PHE HXT H N N 131 PRO N N N N 132 PRO CA C N S 133 PRO C C N N 134 PRO O O N N 135 PRO CB C N N 136 PRO CG C N N 137 PRO CD C N N 138 PRO OXT O N N 139 PRO H H N N 140 PRO HA H N N 141 PRO HB2 H N N 142 PRO HB3 H N N 143 PRO HG2 H N N 144 PRO HG3 H N N 145 PRO HD2 H N N 146 PRO HD3 H N N 147 PRO HXT H N N 148 SER N N N N 149 SER CA C N S 150 SER C C N N 151 SER O O N N 152 SER CB C N N 153 SER OG O N N 154 SER OXT O N N 155 SER H H N N 156 SER H2 H N N 157 SER HA H N N 158 SER HB2 H N N 159 SER HB3 H N N 160 SER HG H N N 161 SER HXT H N N 162 VAL N N N N 163 VAL CA C N S 164 VAL C C N N 165 VAL O O N N 166 VAL CB C N N 167 VAL CG1 C N N 168 VAL CG2 C N N 169 VAL OXT O N N 170 VAL H H N N 171 VAL H2 H N N 172 VAL HA H N N 173 VAL HB H N N 174 VAL HG11 H N N 175 VAL HG12 H N N 176 VAL HG13 H N N 177 VAL HG21 H N N 178 VAL HG22 H N N 179 VAL HG23 H N N 180 VAL HXT H N N 181 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 GLY N CA sing N N 29 GLY N H sing N N 30 GLY N H2 sing N N 31 GLY CA C sing N N 32 GLY CA HA2 sing N N 33 GLY CA HA3 sing N N 34 GLY C O doub N N 35 GLY C OXT sing N N 36 GLY OXT HXT sing N N 37 HIS N CA sing N N 38 HIS N H sing N N 39 HIS N H2 sing N N 40 HIS CA C sing N N 41 HIS CA CB sing N N 42 HIS CA HA sing N N 43 HIS C O doub N N 44 HIS C OXT sing N N 45 HIS CB CG sing N N 46 HIS CB HB2 sing N N 47 HIS CB HB3 sing N N 48 HIS CG ND1 sing Y N 49 HIS CG CD2 doub Y N 50 HIS ND1 CE1 doub Y N 51 HIS ND1 HD1 sing N N 52 HIS CD2 NE2 sing Y N 53 HIS CD2 HD2 sing N N 54 HIS CE1 NE2 sing Y N 55 HIS CE1 HE1 sing N N 56 HIS NE2 HE2 sing N N 57 HIS OXT HXT sing N N 58 ILE N CA sing N N 59 ILE N H sing N N 60 ILE N H2 sing N N 61 ILE CA C sing N N 62 ILE CA CB sing N N 63 ILE CA HA sing N N 64 ILE C O doub N N 65 ILE C OXT sing N N 66 ILE CB CG1 sing N N 67 ILE CB CG2 sing N N 68 ILE CB HB sing N N 69 ILE CG1 CD1 sing N N 70 ILE CG1 HG12 sing N N 71 ILE CG1 HG13 sing N N 72 ILE CG2 HG21 sing N N 73 ILE CG2 HG22 sing N N 74 ILE CG2 HG23 sing N N 75 ILE CD1 HD11 sing N N 76 ILE CD1 HD12 sing N N 77 ILE CD1 HD13 sing N N 78 ILE OXT HXT sing N N 79 LEU N CA sing N N 80 LEU N H sing N N 81 LEU N H2 sing N N 82 LEU CA C sing N N 83 LEU CA CB sing N N 84 LEU CA HA sing N N 85 LEU C O doub N N 86 LEU C OXT sing N N 87 LEU CB CG sing N N 88 LEU CB HB2 sing N N 89 LEU CB HB3 sing N N 90 LEU CG CD1 sing N N 91 LEU CG CD2 sing N N 92 LEU CG HG sing N N 93 LEU CD1 HD11 sing N N 94 LEU CD1 HD12 sing N N 95 LEU CD1 HD13 sing N N 96 LEU CD2 HD21 sing N N 97 LEU CD2 HD22 sing N N 98 LEU CD2 HD23 sing N N 99 LEU OXT HXT sing N N 100 NH2 N HN1 sing N N 101 NH2 N HN2 sing N N 102 PHE N CA sing N N 103 PHE N H sing N N 104 PHE N H2 sing N N 105 PHE CA C sing N N 106 PHE CA CB sing N N 107 PHE CA HA sing N N 108 PHE C O doub N N 109 PHE C OXT sing N N 110 PHE CB CG sing N N 111 PHE CB HB2 sing N N 112 PHE CB HB3 sing N N 113 PHE CG CD1 doub Y N 114 PHE CG CD2 sing Y N 115 PHE CD1 CE1 sing Y N 116 PHE CD1 HD1 sing N N 117 PHE CD2 CE2 doub Y N 118 PHE CD2 HD2 sing N N 119 PHE CE1 CZ doub Y N 120 PHE CE1 HE1 sing N N 121 PHE CE2 CZ sing Y N 122 PHE CE2 HE2 sing N N 123 PHE CZ HZ sing N N 124 PHE OXT HXT sing N N 125 PRO N CA sing N N 126 PRO N CD sing N N 127 PRO N H sing N N 128 PRO CA C sing N N 129 PRO CA CB sing N N 130 PRO CA HA sing N N 131 PRO C O doub N N 132 PRO C OXT sing N N 133 PRO CB CG sing N N 134 PRO CB HB2 sing N N 135 PRO CB HB3 sing N N 136 PRO CG CD sing N N 137 PRO CG HG2 sing N N 138 PRO CG HG3 sing N N 139 PRO CD HD2 sing N N 140 PRO CD HD3 sing N N 141 PRO OXT HXT sing N N 142 SER N CA sing N N 143 SER N H sing N N 144 SER N H2 sing N N 145 SER CA C sing N N 146 SER CA CB sing N N 147 SER CA HA sing N N 148 SER C O doub N N 149 SER C OXT sing N N 150 SER CB OG sing N N 151 SER CB HB2 sing N N 152 SER CB HB3 sing N N 153 SER OG HG sing N N 154 SER OXT HXT sing N N 155 VAL N CA sing N N 156 VAL N H sing N N 157 VAL N H2 sing N N 158 VAL CA C sing N N 159 VAL CA CB sing N N 160 VAL CA HA sing N N 161 VAL C O doub N N 162 VAL C OXT sing N N 163 VAL CB CG1 sing N N 164 VAL CB CG2 sing N N 165 VAL CB HB sing N N 166 VAL CG1 HG11 sing N N 167 VAL CG1 HG12 sing N N 168 VAL CG1 HG13 sing N N 169 VAL CG2 HG21 sing N N 170 VAL CG2 HG22 sing N N 171 VAL CG2 HG23 sing N N 172 VAL OXT HXT sing N N 173 # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model 'AVANCE DRX' _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance DRX' # _atom_sites.entry_id 2JQ1 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_