data_2JQ7 # _entry.id 2JQ7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.348 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2JQ7 pdb_00002jq7 10.2210/pdb2jq7/pdb RCSB RCSB100151 ? ? WWPDB D_1000100151 ? ? # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2007-07-03 _pdbx_database_PDB_obs_spr.pdb_id 2JQ7 _pdbx_database_PDB_obs_spr.replace_pdb_id 2NYO _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1D8T unspecified 'CRYSTAL STRUCTURE OF THE ELONGATION FACTOR EF-TU-MGGDP COMPLEXED WITH THE THIOPEPTIDE GE2270A.' PDB 1E9W unspecified 'CRYSTAL STRUCTURE OF THIOPEPTIDE THIOSTREPTON' PDB 1OLN unspecified 'SOLUTION STRUCTURE OF THIOPEPTIDE THIOSTREPTON BINDING TO L11 SUBSTRATE FROM 50S RIBOSOMAL RNA' PDB 2C77 unspecified 'CRYSTAL STRUCTURE OF THE ELONGATION FACTOR EF-TU-GNP COMPLEXED WITH THIOPEPTIDE GE2270A.' PDB 2ZJP unspecified 'CRYSTAL STRUCTURE OF NOSIHEPTIDE COMPLEXED WITH THE LARGE RIBOSOMAL SUBUNIT OF DEINOCOCCUS RADIODURANS' PDB 3CF5 unspecified 'CRYSTAL STRUCTURE OF RIBOSOMAL L11-RNA COMPLEXED WITH THE THIOPEPTIDE THIOSTREPTON' BMRB 7308 unspecified 'BACKBONE ASSIGNMENT AND RDCS OF L11 IN COMPLEX WITH RNA AND THIOSTREPTON' PDB 1MMS unspecified 'CRYSTAL STRUCTURE OF THE RIBOSOMAL L11-RNA COMPLEX' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2JQ7 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-05-30 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jonker, H.R.A.' 1 'Ilin, S.' 2 'Grimm, S.K.' 3 'Woehnert, J.' 4 'Schwalbe, H.' 5 # _citation.id primary _citation.title 'L11 Domain Rearrangement Upon Binding to RNA and Thiostrepton Studied by NMR Spectroscopy' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 35 _citation.page_first 441 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17169991 _citation.pdbx_database_id_DOI 10.1093/NAR/GKL1066 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jonker, H.R.A.' 1 ? primary 'Ilin, S.' 2 ? primary 'Grimm, S.K.' 3 ? primary 'Woehnert, J.' 4 ? primary 'Schwalbe, H.' 5 ? # _cell.entry_id 2JQ7 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JQ7 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '50S RIBOSOMAL PROTEIN L11' 15111.923 1 ? ? ? ? 2 polymer syn 'RIBOSOMAL RNA' 18693.145 1 ? ? 'L11 BINDING DOMAIN, RESIDUES 1051-1108' ? 3 polymer nat THIOSTREPTON 1805.985 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MAKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLK KAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD ; ;MAKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLK KAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD ; A ? 2 polyribonucleotide no no GCUGGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAGUGCGUAACAGCUCACCAGC GCUGGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAGUGCGUAACAGCUCACCAGC B ? 3 'polypeptide(L)' no yes '(QUA)IA(DHA)AS(BB9)T(DBU)(DCY)(TS9)(BB9)T(BB9)(MH6)(BB9)(DHA)(DHA)(NH2)' XIASASCTTCICTCSCSSX C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 LYS n 1 4 LYS n 1 5 VAL n 1 6 ALA n 1 7 ALA n 1 8 GLN n 1 9 ILE n 1 10 LYS n 1 11 LEU n 1 12 GLN n 1 13 LEU n 1 14 PRO n 1 15 ALA n 1 16 GLY n 1 17 LYS n 1 18 ALA n 1 19 THR n 1 20 PRO n 1 21 ALA n 1 22 PRO n 1 23 PRO n 1 24 VAL n 1 25 GLY n 1 26 PRO n 1 27 ALA n 1 28 LEU n 1 29 GLY n 1 30 GLN n 1 31 HIS n 1 32 GLY n 1 33 VAL n 1 34 ASN n 1 35 ILE n 1 36 MET n 1 37 GLU n 1 38 PHE n 1 39 CYS n 1 40 LYS n 1 41 ARG n 1 42 PHE n 1 43 ASN n 1 44 ALA n 1 45 GLU n 1 46 THR n 1 47 ALA n 1 48 ASP n 1 49 LYS n 1 50 ALA n 1 51 GLY n 1 52 MET n 1 53 ILE n 1 54 LEU n 1 55 PRO n 1 56 VAL n 1 57 VAL n 1 58 ILE n 1 59 THR n 1 60 VAL n 1 61 TYR n 1 62 GLU n 1 63 ASP n 1 64 LYS n 1 65 SER n 1 66 PHE n 1 67 THR n 1 68 PHE n 1 69 ILE n 1 70 ILE n 1 71 LYS n 1 72 THR n 1 73 PRO n 1 74 PRO n 1 75 ALA n 1 76 SER n 1 77 PHE n 1 78 LEU n 1 79 LEU n 1 80 LYS n 1 81 LYS n 1 82 ALA n 1 83 ALA n 1 84 GLY n 1 85 ILE n 1 86 GLU n 1 87 LYS n 1 88 GLY n 1 89 SER n 1 90 SER n 1 91 GLU n 1 92 PRO n 1 93 LYS n 1 94 ARG n 1 95 LYS n 1 96 ILE n 1 97 VAL n 1 98 GLY n 1 99 LYS n 1 100 VAL n 1 101 THR n 1 102 ARG n 1 103 LYS n 1 104 GLN n 1 105 ILE n 1 106 GLU n 1 107 GLU n 1 108 ILE n 1 109 ALA n 1 110 LYS n 1 111 THR n 1 112 LYS n 1 113 MET n 1 114 PRO n 1 115 ASP n 1 116 LEU n 1 117 ASN n 1 118 ALA n 1 119 ASN n 1 120 SER n 1 121 LEU n 1 122 GLU n 1 123 ALA n 1 124 ALA n 1 125 MET n 1 126 LYS n 1 127 ILE n 1 128 ILE n 1 129 GLU n 1 130 GLY n 1 131 THR n 1 132 ALA n 1 133 LYS n 1 134 SER n 1 135 MET n 1 136 GLY n 1 137 ILE n 1 138 GLU n 1 139 VAL n 1 140 VAL n 1 141 ASP n 2 1 G n 2 2 C n 2 3 U n 2 4 G n 2 5 G n 2 6 G n 2 7 A n 2 8 U n 2 9 G n 2 10 U n 2 11 U n 2 12 G n 2 13 G n 2 14 C n 2 15 U n 2 16 U n 2 17 A n 2 18 G n 2 19 A n 2 20 A n 2 21 G n 2 22 C n 2 23 A n 2 24 G n 2 25 C n 2 26 C n 2 27 A n 2 28 U n 2 29 C n 2 30 A n 2 31 U n 2 32 U n 2 33 U n 2 34 A n 2 35 A n 2 36 A n 2 37 G n 2 38 A n 2 39 G n 2 40 U n 2 41 G n 2 42 C n 2 43 G n 2 44 U n 2 45 A n 2 46 A n 2 47 C n 2 48 A n 2 49 G n 2 50 C n 2 51 U n 2 52 C n 2 53 A n 2 54 C n 2 55 C n 2 56 A n 2 57 G n 2 58 C n 3 1 QUA n 3 2 ILE n 3 3 ALA n 3 4 DHA n 3 5 ALA n 3 6 SER n 3 7 BB9 n 3 8 THR n 3 9 DBU n 3 10 DCY n 3 11 TS9 n 3 12 BB9 n 3 13 THR n 3 14 BB9 n 3 15 MH6 n 3 16 BB9 n 3 17 DHA n 3 18 DHA n 3 19 NH2 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene RPLK _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'THERMOTOGA MARITIMA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET11A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _entity_src_nat.entity_id 3 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'STREPTOMYCES AZUREUS' _entity_src_nat.pdbx_ncbi_taxonomy_id 146537 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Escherichia coli' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 562 _pdbx_entity_src_syn.details 'IN VITRO TRANSCRIBED RNA CONSTRUCT.' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP RL11_THEMA 1 ? ? P29395 ? 2 PDB 2JQ7 2 ? ? 2JQ7 ? 3 UNP THCL_STRAJ 3 ? ? P0C8P8 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2JQ7 A 1 ? 141 ? P29395 1 ? 141 ? 1 141 2 2 2JQ7 B 1 ? 58 ? 2JQ7 1051 ? 1108 ? 1051 1108 3 3 2JQ7 C 2 ? 18 ? P0C8P8 1 ? 17 ? 1 17 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BB9 'peptide linking' n '(2Z)-2-amino-3-sulfanylprop-2-enoic acid' ? 'C3 H5 N O2 S' 119.142 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DBU 'peptide linking' n '(2Z)-2-AMINOBUT-2-ENOIC ACID' Z-DEHYDROBUTYRINE 'C4 H7 N O2' 101.104 DCY 'D-peptide linking' . D-CYSTEINE ? 'C3 H7 N O2 S' 121.158 DHA 'peptide linking' n '2-AMINO-ACRYLIC ACID' 2,3-DIDEHYDROALANINE 'C3 H5 N O2' 87.077 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MH6 'peptide linking' n '3-hydroxy-2-iminopropanoic acid' ? 'C3 H5 N O3' 103.077 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 QUA non-polymer . '8-HYDROXY-4-(1-HYDROXYETHYL)QUINOLINE-2-CARBOXYLIC ACID' ? 'C12 H13 N O4' 235.236 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TS9 'L-peptide linking' n '(2S,3S,4R)-2-amino-3,4-dihydroxy-3-methylpentanoic acid' ? 'C6 H13 N O4' 163.172 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.type 'IPAP(1H, 15N)HSQC' _pdbx_nmr_exptl.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 220 _pdbx_nmr_exptl_sample_conditions.temperature_units K _pdbx_nmr_exptl_sample_conditions.label ? _pdbx_nmr_exptl_sample_conditions.pH_units ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units ? # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;0.3 MM [U-13C, U-15N U-2H] RIBOSOMAL PROTEIN L11, 0.3 MM RIBOSOMAL RNA, 0.3 MM THIOSTREPTON ANTIBIOTIC, 20 MM POTASSIUM PHOSPHATE, 200 MM POTASSIUM CHLORIDE, 95% H2O/5% D2O ; _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' _pdbx_nmr_sample_details.label sample_1 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE DRX' _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2JQ7 _pdbx_nmr_refine.method DOCKING _pdbx_nmr_refine.details ;FOR CHAIN A, THE INITIAL COORDINATES ARE OPTIMIZED USING RDCS. LEFT SEMI-FLEXIBLE DURING DOCKING. FOR CHAIN B, INITIAL T. MARITIMA COORDINATES ARE FROM PDB ENTRY 1MMS. LEFT SEMI-FLEXIBLE DURING DOCKING. FOR CHAIN C, THE INITIAL COORDINATES ARE FROM PDB ENTRY 1E9W. LEFT FLEXIBLE ACIDS AND NUCLEIC ACIDS WHICH DO NOT COMPLY WELL WITH THE ANTIBIOTIC IN THE CASE HERE. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2JQ7 _pdbx_nmr_details.text 'THE RDC DATA WAS USED TO DETERMINE THE RELATIVE DOMAIN ORIENTATION OF THE L11 PROTEIN' # _pdbx_nmr_ensemble.entry_id 2JQ7 _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'TOP-RANKED ENSEMBLE, ACCORDING TO THE AVERAGE INTERACTION ENERGY AND BURIED SURFACE AREA' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2JQ7 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement HADDOCK 2.0_DEVEL 'DOMINGUEZ ET AL.' 1 collection TopSpin 1.3 'Bruker Biospin' 2 collection XwinNMR 3.5 'Bruker Biospin' 3 processing NMRPipe 2.5 'Delaglio et al.' 4 'data analysis' Sparky 3.112 'Goddard et al.' 5 'structure solution' CNS 1.1 'Brunger et al.' 6 # _exptl.entry_id 2JQ7 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2JQ7 _struct.title 'Model for thiostrepton binding to the ribosomal L11-RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JQ7 _struct_keywords.pdbx_keywords RIBOSOME/ANTIBIOTIC _struct_keywords.text 'RIBOSOME-ANTIBIOTIC COMPLEX, THIOPEPTIDE, ANTIBACTERIAL, THIAZOLE, THIAZOLINE, OXAZOLE, RIBOSOME, L11, TRANSLATION INHIBITION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 20 ? GLN A 30 ? PRO A 20 GLN A 30 1 ? 11 HELX_P HELX_P2 2 ASN A 34 ? THR A 46 ? ASN A 34 THR A 46 1 ? 13 HELX_P HELX_P3 3 ALA A 47 ? ALA A 50 ? ALA A 47 ALA A 50 5 ? 4 HELX_P HELX_P4 4 PRO A 74 ? GLY A 84 ? PRO A 74 GLY A 84 1 ? 11 HELX_P HELX_P5 5 ARG A 102 ? LYS A 112 ? ARG A 102 LYS A 112 1 ? 11 HELX_P HELX_P6 6 SER A 120 ? SER A 134 ? SER A 120 SER A 134 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? C QUA 1 C7 ? ? ? 1_555 C ILE 2 N ? ? C QUA 0 C ILE 1 1_555 ? ? ? ? ? ? ? 1.492 ? ? covale2 covale one ? C QUA 1 C11 ? ? ? 1_555 C THR 13 OG1 ? ? C QUA 0 C THR 12 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? C ALA 3 C ? ? ? 1_555 C DHA 4 N ? ? C ALA 2 C DHA 3 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? C DHA 4 C ? ? ? 1_555 C ALA 5 N ? ? C DHA 3 C ALA 4 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale5 covale one ? C SER 6 C ? ? ? 1_555 C BB9 7 SG ? ? C SER 5 C BB9 6 1_555 ? ? ? ? ? ? ? 1.722 ? ? covale6 covale both ? C SER 6 C ? ? ? 1_555 C BB9 7 N ? ? C SER 5 C BB9 6 1_555 ? ? ? ? ? ? ? 1.294 ? ? covale7 covale one ? C SER 6 CA ? ? ? 1_555 C BB9 14 C ? ? C SER 5 C BB9 13 1_555 ? ? ? ? ? ? ? 1.564 ? ? covale8 covale one ? C SER 6 CB ? ? ? 1_555 C MH6 15 CB ? ? C SER 5 C MH6 14 1_555 ? ? ? ? ? ? ? 1.518 ? ? covale9 covale both ? C BB9 7 C ? ? ? 1_555 C THR 8 N ? ? C BB9 6 C THR 7 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale10 covale both ? C THR 8 C ? ? ? 1_555 C DBU 9 N ? ? C THR 7 C DBU 8 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale11 covale both ? C DBU 9 C ? ? ? 1_555 C DCY 10 N ? ? C DBU 8 C DCY 9 1_555 ? ? ? ? ? ? ? 1.305 ? ? covale12 covale one ? C DBU 9 C ? ? ? 1_555 C DCY 10 SG ? ? C DBU 8 C DCY 9 1_555 ? ? ? ? ? ? ? 1.732 ? ? covale13 covale both ? C DCY 10 C ? ? ? 1_555 C TS9 11 N ? ? C DCY 9 C TS9 10 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale14 covale one ? C TS9 11 C ? ? ? 1_555 C BB9 12 SG ? ? C TS9 10 C BB9 11 1_555 ? ? ? ? ? ? ? 1.721 ? ? covale15 covale both ? C TS9 11 C ? ? ? 1_555 C BB9 12 N ? ? C TS9 10 C BB9 11 1_555 ? ? ? ? ? ? ? 1.295 ? ? covale16 covale both ? C BB9 12 C ? ? ? 1_555 C THR 13 N ? ? C BB9 11 C THR 12 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale17 covale one ? C THR 13 C ? ? ? 1_555 C BB9 14 SG ? ? C THR 12 C BB9 13 1_555 ? ? ? ? ? ? ? 1.722 ? ? covale18 covale both ? C THR 13 C ? ? ? 1_555 C BB9 14 N ? ? C THR 12 C BB9 13 1_555 ? ? ? ? ? ? ? 1.290 ? ? covale19 covale both ? C BB9 14 C ? ? ? 1_555 C MH6 15 N ? ? C BB9 13 C MH6 14 1_555 ? ? ? ? ? ? ? 1.467 ? ? covale20 covale one ? C MH6 15 C ? ? ? 1_555 C BB9 16 SG ? ? C MH6 14 C BB9 15 1_555 ? ? ? ? ? ? ? 1.718 ? ? covale21 covale both ? C MH6 15 C ? ? ? 1_555 C BB9 16 N ? ? C MH6 14 C BB9 15 1_555 ? ? ? ? ? ? ? 1.285 ? ? covale22 covale both ? C BB9 16 C ? ? ? 1_555 C DHA 17 N ? ? C BB9 15 C DHA 16 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale23 covale both ? C DHA 17 C ? ? ? 1_555 C DHA 18 N ? ? C DHA 16 C DHA 17 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale24 covale both ? C DHA 18 C ? ? ? 1_555 C NH2 19 N ? ? C DHA 17 C NH2 18 1_555 ? ? ? ? ? ? ? 1.328 ? ? hydrog1 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 58 N3 ? ? B G 1051 B C 1108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 58 O2 ? ? B G 1051 B C 1108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 58 N4 ? ? B G 1051 B C 1108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B C 2 O2 ? ? ? 1_555 B G 57 N1 ? ? B C 1052 B G 1107 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog5 hydrog ? ? B U 3 N3 ? ? ? 1_555 B A 56 N1 ? ? B U 1053 B A 1106 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog6 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 55 O2 ? ? B G 1054 B C 1105 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog7 hydrog ? ? B G 5 N2 ? ? ? 1_555 B A 35 N3 ? ? B G 1055 B A 1085 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog8 hydrog ? ? B G 5 N1 ? ? ? 1_555 B C 54 N3 ? ? B G 1055 B C 1104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B G 5 N2 ? ? ? 1_555 B C 54 O2 ? ? B G 1055 B C 1104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B G 5 O6 ? ? ? 1_555 B C 54 N4 ? ? B G 1055 B C 1104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B G 6 N2 ? ? ? 1_555 B A 53 N7 ? ? B G 1056 B A 1103 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog12 hydrog ? ? B G 6 N3 ? ? ? 1_555 B A 53 N6 ? ? B G 1056 B A 1103 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog13 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 30 N1 ? ? B U 1058 B A 1080 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 30 N6 ? ? B U 1058 B A 1080 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B G 9 N1 ? ? ? 1_555 B C 29 N3 ? ? B G 1059 B C 1079 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B G 9 N2 ? ? ? 1_555 B C 29 O2 ? ? B G 1059 B C 1079 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B G 9 O6 ? ? ? 1_555 B C 29 N4 ? ? B G 1059 B C 1079 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B U 10 N3 ? ? ? 1_555 B A 38 N7 ? ? B U 1060 B A 1088 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog19 hydrog ? ? B U 10 O4 ? ? ? 1_555 B A 38 N6 ? ? B U 1060 B A 1088 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog20 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 26 N3 ? ? B G 1062 B C 1076 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog21 hydrog ? ? B G 13 N1 ? ? ? 1_555 B C 25 N3 ? ? B G 1063 B C 1075 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B G 13 N2 ? ? ? 1_555 B C 25 O2 ? ? B G 1063 B C 1075 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B G 13 O6 ? ? ? 1_555 B C 25 N4 ? ? B G 1063 B C 1075 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B C 14 N3 ? ? ? 1_555 B G 24 N1 ? ? B C 1064 B G 1074 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B C 14 N4 ? ? ? 1_555 B G 24 O6 ? ? B C 1064 B G 1074 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B C 14 O2 ? ? ? 1_555 B G 24 N2 ? ? B C 1064 B G 1074 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B G 21 N1 ? ? ? 1_555 B G 41 O6 ? ? B G 1071 B G 1091 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? B G 21 N2 ? ? ? 1_555 B G 41 N7 ? ? B G 1071 B G 1091 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? B G 21 O6 ? ? ? 1_555 B C 50 N4 ? ? B G 1071 B C 1100 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog30 hydrog ? ? B C 22 O2 ? ? ? 1_555 B C 42 N4 ? ? B C 1072 B C 1092 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog31 hydrog ? ? B C 22 O2 ? ? ? 1_555 B G 43 N1 ? ? B C 1072 B G 1093 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog32 hydrog ? ? B U 32 N3 ? ? ? 1_555 B A 36 N1 ? ? B U 1082 B A 1086 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog33 hydrog ? ? B U 32 O2 ? ? ? 1_555 B A 36 N6 ? ? B U 1082 B A 1086 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog34 hydrog ? ? B G 37 N1 ? ? ? 1_555 B C 52 N3 ? ? B G 1087 B C 1102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B G 37 N2 ? ? ? 1_555 B C 52 O2 ? ? B G 1087 B C 1102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B G 37 O6 ? ? ? 1_555 B C 52 N4 ? ? B G 1087 B C 1102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B G 39 N2 ? ? ? 1_555 B U 40 O4 ? ? B G 1089 B U 1090 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog38 hydrog ? ? B G 39 N2 ? ? ? 1_555 B G 41 O6 ? ? B G 1089 B G 1091 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog39 hydrog ? ? B U 40 N3 ? ? ? 1_555 B U 51 O2 ? ? B U 1090 B U 1101 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog40 hydrog ? ? B U 40 O4 ? ? ? 1_555 B U 51 N3 ? ? B U 1090 B U 1101 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog41 hydrog ? ? B G 41 N1 ? ? ? 1_555 B C 50 O2 ? ? B G 1091 B C 1100 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog42 hydrog ? ? B C 42 N3 ? ? ? 1_555 B G 49 N1 ? ? B C 1092 B G 1099 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B C 42 N4 ? ? ? 1_555 B G 49 O6 ? ? B C 1092 B G 1099 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B C 42 O2 ? ? ? 1_555 B G 49 N2 ? ? B C 1092 B G 1099 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B G 43 N2 ? ? ? 1_555 B A 48 N7 ? ? B G 1093 B A 1098 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 3 ? AB ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AB 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ILE A 9 ? PRO A 14 ? ILE A 9 PRO A 14 AA 2 ILE A 53 ? VAL A 60 ? ILE A 53 VAL A 60 AA 3 PHE A 66 ? ILE A 70 ? PHE A 66 ILE A 70 AB 1 GLY A 98 ? THR A 101 ? GLY A 98 THR A 101 AB 2 ILE A 137 ? VAL A 140 ? ILE A 137 VAL A 140 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LEU A 13 ? N LEU A 13 O LEU A 54 ? O LEU A 54 AA 2 3 N THR A 59 ? N THR A 59 O THR A 67 ? O THR A 67 AB 1 2 N VAL A 100 ? N VAL A 100 O GLU A 138 ? O GLU A 138 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR CHAIN C OF THIOSTREPTON' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 PRO A 22 ? PRO A 22 . ? 1_555 ? 2 AC1 7 PRO A 26 ? PRO A 26 . ? 1_555 ? 3 AC1 7 MET A 36 ? MET A 36 . ? 1_555 ? 4 AC1 7 A B 17 ? A B 1067 . ? 1_555 ? 5 AC1 7 G B 18 ? G B 1068 . ? 1_555 ? 6 AC1 7 U B 44 ? U B 1094 . ? 1_555 ? 7 AC1 7 A B 45 ? A B 1095 . ? 1_555 ? # _database_PDB_matrix.entry_id 2JQ7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2JQ7 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 LYS 3 3 ? ? ? A . n A 1 4 LYS 4 4 ? ? ? A . n A 1 5 VAL 5 5 ? ? ? A . n A 1 6 ALA 6 6 ? ? ? A . n A 1 7 ALA 7 7 ? ? ? A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 GLN 12 12 12 GLN GLN A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 PRO 23 23 23 PRO PRO A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 HIS 31 31 31 HIS HIS A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 CYS 39 39 39 CYS CYS A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 MET 52 52 52 MET MET A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 TYR 61 61 61 TYR TYR A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 PHE 68 68 68 PHE PHE A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 PHE 77 77 77 PHE PHE A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 GLN 104 104 104 GLN GLN A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 THR 111 111 111 THR THR A . n A 1 112 LYS 112 112 112 LYS LYS A . n A 1 113 MET 113 113 113 MET MET A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 ASN 119 119 119 ASN ASN A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 MET 125 125 125 MET MET A . n A 1 126 LYS 126 126 126 LYS LYS A . n A 1 127 ILE 127 127 127 ILE ILE A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 GLU 129 129 129 GLU GLU A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 THR 131 131 131 THR THR A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 LYS 133 133 133 LYS LYS A . n A 1 134 SER 134 134 134 SER SER A . n A 1 135 MET 135 135 135 MET MET A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 VAL 139 139 139 VAL VAL A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 ASP 141 141 141 ASP ASP A . n B 2 1 G 1 1051 1051 G G B . n B 2 2 C 2 1052 1052 C C B . n B 2 3 U 3 1053 1053 U U B . n B 2 4 G 4 1054 1054 G G B . n B 2 5 G 5 1055 1055 G G B . n B 2 6 G 6 1056 1056 G G B . n B 2 7 A 7 1057 1057 A A B . n B 2 8 U 8 1058 1058 U U B . n B 2 9 G 9 1059 1059 G G B . n B 2 10 U 10 1060 1060 U U B . n B 2 11 U 11 1061 1061 U U B . n B 2 12 G 12 1062 1062 G G B . n B 2 13 G 13 1063 1063 G G B . n B 2 14 C 14 1064 1064 C C B . n B 2 15 U 15 1065 1065 U U B . n B 2 16 U 16 1066 1066 U U B . n B 2 17 A 17 1067 1067 A A B . n B 2 18 G 18 1068 1068 G G B . n B 2 19 A 19 1069 1069 A A B . n B 2 20 A 20 1070 1070 A A B . n B 2 21 G 21 1071 1071 G G B . n B 2 22 C 22 1072 1072 C C B . n B 2 23 A 23 1073 1073 A A B . n B 2 24 G 24 1074 1074 G G B . n B 2 25 C 25 1075 1075 C C B . n B 2 26 C 26 1076 1076 C C B . n B 2 27 A 27 1077 1077 A A B . n B 2 28 U 28 1078 1078 U U B . n B 2 29 C 29 1079 1079 C C B . n B 2 30 A 30 1080 1080 A A B . n B 2 31 U 31 1081 1081 U U B . n B 2 32 U 32 1082 1082 U U B . n B 2 33 U 33 1083 1083 U U B . n B 2 34 A 34 1084 1084 A A B . n B 2 35 A 35 1085 1085 A A B . n B 2 36 A 36 1086 1086 A A B . n B 2 37 G 37 1087 1087 G G B . n B 2 38 A 38 1088 1088 A A B . n B 2 39 G 39 1089 1089 G G B . n B 2 40 U 40 1090 1090 U U B . n B 2 41 G 41 1091 1091 G G B . n B 2 42 C 42 1092 1092 C C B . n B 2 43 G 43 1093 1093 G G B . n B 2 44 U 44 1094 1094 U U B . n B 2 45 A 45 1095 1095 A A B . n B 2 46 A 46 1096 1096 A A B . n B 2 47 C 47 1097 1097 C C B . n B 2 48 A 48 1098 1098 A A B . n B 2 49 G 49 1099 1099 G G B . n B 2 50 C 50 1100 1100 C C B . n B 2 51 U 51 1101 1101 U U B . n B 2 52 C 52 1102 1102 C C B . n B 2 53 A 53 1103 1103 A A B . n B 2 54 C 54 1104 1104 C C B . n B 2 55 C 55 1105 1105 C C B . n B 2 56 A 56 1106 1106 A A B . n B 2 57 G 57 1107 1107 G G B . n B 2 58 C 58 1108 1108 C C B . n C 3 1 QUA 1 0 0 QUA QUA C . n C 3 2 ILE 2 1 1 ILE ILE C . n C 3 3 ALA 3 2 2 ALA ALA C . n C 3 4 DHA 4 3 3 DHA DHA C . n C 3 5 ALA 5 4 4 ALA ALA C . n C 3 6 SER 6 5 5 SER SER C . n C 3 7 BB9 7 6 6 BB9 BB9 C . n C 3 8 THR 8 7 7 THR THR C . n C 3 9 DBU 9 8 8 DBU DBU C . n C 3 10 DCY 10 9 9 DCY DCY C . n C 3 11 TS9 11 10 10 TS9 TS9 C . n C 3 12 BB9 12 11 11 BB9 BB9 C . n C 3 13 THR 13 12 12 THR THR C . n C 3 14 BB9 14 13 13 BB9 BB9 C . n C 3 15 MH6 15 14 14 MH6 MH6 C . n C 3 16 BB9 16 15 15 BB9 BB9 C . n C 3 17 DHA 17 16 16 DHA DHA C . n C 3 18 DHA 18 17 17 DHA DHA C . n C 3 19 NH2 19 18 18 NH2 NH2 C . n # _pdbx_molecule_features.prd_id PRD_000223 _pdbx_molecule_features.name THIOSTREPTON _pdbx_molecule_features.type Thiopeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;Thiostrepton is a hetrocyclic thiopeptide belonging to the thiocillin family, consisting of four thiazole, one thiozoline and one piperideine rings. A modified quinoline linked to main-chain residue 1 and side-chain of residue 12. Post translational maturation of thiazole and oxazole containing antibiotics involves the enzymic condensation of a Cys or Ser with the alpha-carbonyl of the preceding amino acid to form a thioether or ether bond, then dehydration to form a double bond with the alpha-amino nitrogen. Thiazoline or oxazoline ring are dehydrogenated to form thiazole or oxazole rings. the pyridinyl involves the cross-linking of a Ser and a Cys-Ser pair usually separated by 7 or 8 residues along the peptide chain. The Ser residues are dehydrated to didehydroalanines, then bonded between their beta carbons. The alpha carbonyl of the Cys condenses with alpha carbon of the first Ser to form a pyridinyl ring. The ring may be mutiply dehydrogenated to form a pyridine ring with loss of the amino nitrogen of the first Ser. The amidation of Ser-17 probably does not occur by the same mechanism, oxidative cleavage of glycine, as in eukaryotes. ; # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000223 _pdbx_molecule.asym_id C # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 C DHA 4 C DHA 3 ? SER 'POST-TRANSLATIONAL MODIFICATION' 2 C BB9 7 C BB9 6 ? CYS 'POST-TRANSLATIONAL MODIFICATION' 3 C DBU 9 C DBU 8 ? THR 'POST-TRANSLATIONAL MODIFICATION' 4 C TS9 11 C TS9 10 ? ILE 'POST-TRANSLATIONAL MODIFICATION' 5 C BB9 12 C BB9 11 ? CYS 'POST-TRANSLATIONAL MODIFICATION' 6 C BB9 14 C BB9 13 ? CYS 'POST-TRANSLATIONAL MODIFICATION' 7 C MH6 15 C MH6 14 ? SER 'POST-TRANSLATIONAL MODIFICATION' 8 C BB9 16 C BB9 15 ? CYS 'POST-TRANSLATIONAL MODIFICATION' 9 C DHA 17 C DHA 16 ? SER 'POST-TRANSLATIONAL MODIFICATION' 10 C DHA 18 C DHA 17 ? SER 'POST-TRANSLATIONAL MODIFICATION' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4750 ? 1 MORE -37 ? 1 'SSA (A^2)' 14870 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-07-03 2 'Structure model' 1 1 2011-06-14 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2012-12-12 6 'Structure model' 1 5 2015-05-27 7 'Structure model' 1 6 2017-11-01 8 'Structure model' 2 0 2021-08-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' Other 9 6 'Structure model' 'Source and taxonomy' 10 7 'Structure model' 'Derived calculations' 11 7 'Structure model' 'Structure summary' 12 8 'Structure model' 'Data collection' 13 8 'Structure model' 'Database references' 14 8 'Structure model' 'Derived calculations' 15 8 'Structure model' 'Experimental preparation' 16 8 'Structure model' 'Polymer sequence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 7 'Structure model' pdbx_nmr_representative 2 7 'Structure model' pdbx_struct_assembly 3 8 'Structure model' database_2 4 8 'Structure model' entity_poly 5 8 'Structure model' pdbx_nmr_exptl 6 8 'Structure model' pdbx_nmr_exptl_sample 7 8 'Structure model' pdbx_nmr_sample_details 8 8 'Structure model' pdbx_nmr_software 9 8 'Structure model' pdbx_nmr_spectrometer 10 8 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 7 'Structure model' '_pdbx_nmr_representative.selection_criteria' 2 7 'Structure model' '_pdbx_struct_assembly.method_details' 3 8 'Structure model' '_database_2.pdbx_DOI' 4 8 'Structure model' '_database_2.pdbx_database_accession' 5 8 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 6 8 'Structure model' '_pdbx_nmr_exptl_sample.isotopic_labeling' 7 8 'Structure model' '_pdbx_nmr_software.authors' 8 8 'Structure model' '_pdbx_nmr_software.classification' 9 8 'Structure model' '_pdbx_nmr_software.name' 10 8 'Structure model' '_pdbx_nmr_software.version' 11 8 'Structure model' '_pdbx_nmr_spectrometer.model' 12 8 'Structure model' '_struct_conn.pdbx_dist_value' 13 8 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 14 8 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 8 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 8 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 8 'Structure model' '_struct_conn.ptnr2_label_atom_id' 18 8 'Structure model' '_struct_conn.ptnr2_label_comp_id' 19 8 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_entry_details.entry_id 2JQ7 _pdbx_entry_details.compound_details ;THIOSTREPTON IS A MEMBER OF A SULPHUR-RICH HETEROCYCLIC PEPTIDES CLASS. ALL SHARE A MACROCYLIC CORE, CONSISTING OF A NITROGEN CONTAINING, SIX-MEMBERED RING CENTRAL TO DEHYDROAMINO ACIDS AND A SUBSET OF FIVE MEMBER RING STRUCTURES INCLUDING THIAZOLES, THIAZOLINES AND OXAZOLES. HERE, THIOSTREPTON IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.concentration_range 'Ribosomal Protein L11' 0.3 mM '[U-13C; U-15N; U-2H]' 1 ? 'Ribosomal RNA' 0.3 mM 'natural abundance' 1 ? 'Thiostrepton Antibiotic' 0.3 mM 'natural abundance' 1 ? 'potassium phosphate' 20 mM 'natural abundance' 1 ? 'potassium chloride' 200 mM 'natural abundance' 1 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 DCY _pdbx_validate_rmsd_angle.auth_seq_id_1 9 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 DCY _pdbx_validate_rmsd_angle.auth_seq_id_2 9 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 DCY _pdbx_validate_rmsd_angle.auth_seq_id_3 9 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 102.89 _pdbx_validate_rmsd_angle.angle_target_value 114.00 _pdbx_validate_rmsd_angle.angle_deviation -11.11 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.80 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 19 ? ? -177.73 -28.13 2 1 PRO A 23 ? ? -81.93 -72.03 3 1 TYR A 61 ? ? -122.94 -168.04 4 1 PRO A 92 ? ? -42.91 -75.13 5 1 ALA C 2 ? ? -150.65 79.31 6 1 SER C 5 ? ? 70.93 100.35 7 1 DCY C 9 ? ? -151.58 -66.12 8 1 TS9 C 10 ? ? -24.26 -67.97 9 2 THR A 19 ? ? -154.08 -50.08 10 2 PRO A 20 ? ? -34.06 119.70 11 2 LYS A 64 ? ? -78.41 43.16 12 2 LYS A 95 ? ? 88.35 99.09 13 2 VAL A 97 ? ? -97.05 -60.71 14 2 SER C 5 ? ? 71.31 91.99 15 2 DCY C 9 ? ? -141.10 -27.09 16 2 TS9 C 10 ? ? -79.91 -77.37 17 3 ALA A 15 ? ? -66.22 98.13 18 3 THR A 19 ? ? -177.67 -27.95 19 3 LYS A 64 ? ? 51.94 -143.69 20 3 SER A 65 ? ? 63.87 159.28 21 3 ALA A 83 ? ? -95.79 -143.66 22 3 LYS A 87 ? ? 79.35 153.65 23 3 PRO A 92 ? ? -50.56 -74.04 24 3 ILE A 137 ? ? 30.37 99.87 25 3 VAL A 140 ? ? 144.21 -43.24 26 3 SER C 5 ? ? 61.04 86.67 27 3 DCY C 9 ? ? -141.92 -28.32 28 3 TS9 C 10 ? ? -76.15 -84.20 29 4 THR A 19 ? ? 174.59 -29.83 30 4 TYR A 61 ? ? -117.36 -165.95 31 4 LYS A 64 ? ? -73.23 46.41 32 4 PRO A 92 ? ? -59.89 -70.49 33 4 LYS A 95 ? ? 89.37 103.69 34 4 SER C 5 ? ? 68.28 86.90 35 4 DCY C 9 ? ? -140.83 30.36 36 4 TS9 C 10 ? ? -141.77 -73.11 37 5 LYS A 17 ? ? 166.58 78.70 38 5 THR A 19 ? ? -159.91 -49.90 39 5 VAL A 24 ? ? -122.76 -84.72 40 5 ASP A 63 ? ? -87.34 37.03 41 5 LYS A 64 ? ? 57.39 -147.82 42 5 SER A 65 ? ? 63.52 175.18 43 5 LYS A 71 ? ? -104.34 -162.58 44 5 ALA A 83 ? ? -115.76 63.34 45 5 ILE A 85 ? ? -86.72 -95.47 46 5 GLU A 86 ? ? 48.62 -100.74 47 5 LYS A 87 ? ? -110.27 -86.73 48 5 SER A 89 ? ? 70.25 112.46 49 5 PRO A 92 ? ? -44.09 -79.81 50 5 LYS A 95 ? ? -95.16 -134.95 51 5 ILE A 96 ? ? 173.43 94.19 52 5 ILE A 137 ? ? 28.81 90.52 53 5 SER C 5 ? ? 71.27 97.82 54 5 DCY C 9 ? ? -144.71 -34.90 55 5 TS9 C 10 ? ? -55.25 -76.64 56 6 ALA A 18 ? ? -161.29 83.43 57 6 THR A 19 ? ? -145.40 -47.46 58 6 VAL A 24 ? ? -98.40 -106.18 59 6 VAL A 33 ? ? 83.57 128.71 60 6 TYR A 61 ? ? -126.13 -167.93 61 6 LYS A 64 ? ? -72.00 49.31 62 6 ALA A 83 ? ? -107.91 -149.21 63 6 GLU A 86 ? ? 82.18 -73.54 64 6 SER A 89 ? ? 44.73 102.75 65 6 LYS A 93 ? ? 72.72 -34.05 66 6 ASN A 119 ? ? 67.97 -73.44 67 6 ILE A 137 ? ? 20.51 106.18 68 6 VAL A 140 ? ? 74.98 -64.17 69 6 ALA C 2 ? ? -166.10 24.66 70 6 SER C 5 ? ? 54.96 82.17 71 6 DCY C 9 ? ? -148.91 -34.31 72 6 TS9 C 10 ? ? -59.65 -71.46 73 6 THR C 12 ? ? -125.99 -168.77 74 7 ALA A 18 ? ? -157.35 88.49 75 7 THR A 19 ? ? -150.80 -51.73 76 7 PRO A 20 ? ? -37.73 134.33 77 7 VAL A 24 ? ? -113.62 -104.30 78 7 VAL A 33 ? ? 81.38 116.75 79 7 ALA A 83 ? ? -94.40 -151.18 80 7 GLU A 86 ? ? 83.03 -51.57 81 7 SER A 89 ? ? 50.26 112.51 82 7 LYS A 93 ? ? 72.60 -32.16 83 7 VAL A 97 ? ? -93.87 -71.28 84 7 LEU A 116 ? ? -160.70 92.83 85 7 ASN A 119 ? ? 66.89 -67.45 86 7 ILE A 137 ? ? 30.84 101.12 87 7 VAL A 140 ? ? 78.29 -56.14 88 7 ALA C 4 ? ? -160.91 105.83 89 7 SER C 5 ? ? 61.17 92.43 90 7 DCY C 9 ? ? -147.91 -27.98 91 7 TS9 C 10 ? ? -57.63 -79.19 92 8 ALA A 15 ? ? -59.27 109.08 93 8 THR A 19 ? ? 177.75 -35.04 94 8 VAL A 24 ? ? -84.24 -93.52 95 8 ILE A 35 ? ? 66.41 -75.12 96 8 LYS A 64 ? ? 72.00 -1.53 97 8 ALA A 83 ? ? -89.41 -155.55 98 8 ILE A 85 ? ? -89.68 -92.90 99 8 GLU A 86 ? ? 63.39 -71.98 100 8 LYS A 87 ? ? -139.73 -78.52 101 8 SER A 89 ? ? 63.83 106.82 102 8 PRO A 92 ? ? -71.01 -72.06 103 8 LYS A 95 ? ? 89.78 109.78 104 8 VAL A 97 ? ? -155.80 -27.57 105 8 ILE A 137 ? ? 36.34 80.69 106 8 SER C 5 ? ? 74.07 102.31 107 8 DCY C 9 ? ? -146.26 -33.55 108 8 TS9 C 10 ? ? -57.44 -71.87 109 9 ALA A 15 ? ? -64.18 97.66 110 9 THR A 19 ? ? -160.47 -51.44 111 9 VAL A 24 ? ? -122.84 -54.19 112 9 ASP A 63 ? ? -92.86 51.51 113 9 LYS A 64 ? ? 53.07 -146.97 114 9 SER A 65 ? ? 63.14 161.17 115 9 ILE A 85 ? ? -87.90 -126.88 116 9 GLU A 86 ? ? 65.04 -74.24 117 9 LYS A 87 ? ? -130.22 -131.32 118 9 SER A 89 ? ? 67.61 111.52 119 9 PRO A 92 ? ? -47.30 -79.96 120 9 LYS A 95 ? ? -99.32 -128.24 121 9 ILE A 96 ? ? 170.34 140.50 122 9 ILE A 137 ? ? 34.22 90.77 123 9 ALA C 2 ? ? -131.63 -86.97 124 9 SER C 5 ? ? 73.45 96.81 125 9 DCY C 9 ? ? -139.44 -30.04 126 9 TS9 C 10 ? ? -65.96 -76.19 127 9 THR C 12 ? ? -129.59 -163.37 128 10 ALA A 15 ? ? -68.82 93.25 129 10 ALA A 18 ? ? -153.13 89.91 130 10 THR A 19 ? ? -155.87 -47.53 131 10 VAL A 24 ? ? -110.54 -99.69 132 10 LYS A 49 ? ? -156.00 41.45 133 10 LYS A 64 ? ? -72.97 47.05 134 10 ILE A 85 ? ? -92.89 -132.82 135 10 GLU A 86 ? ? 75.01 -65.02 136 10 SER A 89 ? ? 51.79 105.58 137 10 LYS A 93 ? ? 73.28 -30.28 138 10 PRO A 114 ? ? -66.94 1.10 139 10 SER C 5 ? ? 74.63 99.49 140 10 THR C 7 ? ? -170.79 140.20 141 10 DCY C 9 ? ? -138.33 -22.93 142 10 TS9 C 10 ? ? -75.27 -79.83 143 10 THR C 12 ? ? -125.56 -166.79 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 4 _pdbx_validate_peptide_omega.auth_comp_id_1 BB9 _pdbx_validate_peptide_omega.auth_asym_id_1 C _pdbx_validate_peptide_omega.auth_seq_id_1 13 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 MH6 _pdbx_validate_peptide_omega.auth_asym_id_2 C _pdbx_validate_peptide_omega.auth_seq_id_2 14 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 149.36 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A LYS 3 ? A LYS 3 4 1 Y 1 A LYS 4 ? A LYS 4 5 1 Y 1 A VAL 5 ? A VAL 5 6 1 Y 1 A ALA 6 ? A ALA 6 7 1 Y 1 A ALA 7 ? A ALA 7 8 2 Y 1 A MET 1 ? A MET 1 9 2 Y 1 A ALA 2 ? A ALA 2 10 2 Y 1 A LYS 3 ? A LYS 3 11 2 Y 1 A LYS 4 ? A LYS 4 12 2 Y 1 A VAL 5 ? A VAL 5 13 2 Y 1 A ALA 6 ? A ALA 6 14 2 Y 1 A ALA 7 ? A ALA 7 15 3 Y 1 A MET 1 ? A MET 1 16 3 Y 1 A ALA 2 ? A ALA 2 17 3 Y 1 A LYS 3 ? A LYS 3 18 3 Y 1 A LYS 4 ? A LYS 4 19 3 Y 1 A VAL 5 ? A VAL 5 20 3 Y 1 A ALA 6 ? A ALA 6 21 3 Y 1 A ALA 7 ? A ALA 7 22 4 Y 1 A MET 1 ? A MET 1 23 4 Y 1 A ALA 2 ? A ALA 2 24 4 Y 1 A LYS 3 ? A LYS 3 25 4 Y 1 A LYS 4 ? A LYS 4 26 4 Y 1 A VAL 5 ? A VAL 5 27 4 Y 1 A ALA 6 ? A ALA 6 28 4 Y 1 A ALA 7 ? A ALA 7 29 5 Y 1 A MET 1 ? A MET 1 30 5 Y 1 A ALA 2 ? A ALA 2 31 5 Y 1 A LYS 3 ? A LYS 3 32 5 Y 1 A LYS 4 ? A LYS 4 33 5 Y 1 A VAL 5 ? A VAL 5 34 5 Y 1 A ALA 6 ? A ALA 6 35 5 Y 1 A ALA 7 ? A ALA 7 36 6 Y 1 A MET 1 ? A MET 1 37 6 Y 1 A ALA 2 ? A ALA 2 38 6 Y 1 A LYS 3 ? A LYS 3 39 6 Y 1 A LYS 4 ? A LYS 4 40 6 Y 1 A VAL 5 ? A VAL 5 41 6 Y 1 A ALA 6 ? A ALA 6 42 6 Y 1 A ALA 7 ? A ALA 7 43 7 Y 1 A MET 1 ? A MET 1 44 7 Y 1 A ALA 2 ? A ALA 2 45 7 Y 1 A LYS 3 ? A LYS 3 46 7 Y 1 A LYS 4 ? A LYS 4 47 7 Y 1 A VAL 5 ? A VAL 5 48 7 Y 1 A ALA 6 ? A ALA 6 49 7 Y 1 A ALA 7 ? A ALA 7 50 8 Y 1 A MET 1 ? A MET 1 51 8 Y 1 A ALA 2 ? A ALA 2 52 8 Y 1 A LYS 3 ? A LYS 3 53 8 Y 1 A LYS 4 ? A LYS 4 54 8 Y 1 A VAL 5 ? A VAL 5 55 8 Y 1 A ALA 6 ? A ALA 6 56 8 Y 1 A ALA 7 ? A ALA 7 57 9 Y 1 A MET 1 ? A MET 1 58 9 Y 1 A ALA 2 ? A ALA 2 59 9 Y 1 A LYS 3 ? A LYS 3 60 9 Y 1 A LYS 4 ? A LYS 4 61 9 Y 1 A VAL 5 ? A VAL 5 62 9 Y 1 A ALA 6 ? A ALA 6 63 9 Y 1 A ALA 7 ? A ALA 7 64 10 Y 1 A MET 1 ? A MET 1 65 10 Y 1 A ALA 2 ? A ALA 2 66 10 Y 1 A LYS 3 ? A LYS 3 67 10 Y 1 A LYS 4 ? A LYS 4 68 10 Y 1 A VAL 5 ? A VAL 5 69 10 Y 1 A ALA 6 ? A ALA 6 70 10 Y 1 A ALA 7 ? A ALA 7 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2JQ7 'double helix' 2JQ7 'a-form double helix' 2JQ7 'mismatched base pair' 2JQ7 'internal loop' 2JQ7 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 B C 58 1_555 -1.306 -0.459 -0.128 -1.705 -0.009 -3.680 1 B_G1051:C1108_B B 1051 ? B 1108 ? 19 1 1 B C 2 1_555 B G 57 1_555 1.949 -0.355 -0.063 2.176 -1.366 9.881 2 B_C1052:G1107_B B 1052 ? B 1107 ? ? 1 1 B U 3 1_555 B A 56 1_555 0.317 -0.003 -0.080 0.340 0.839 17.463 3 B_U1053:A1106_B B 1053 ? B 1106 ? ? 1 1 B G 4 1_555 B C 55 1_555 -1.352 -0.071 0.087 -1.014 -5.018 10.766 4 B_G1054:C1105_B B 1054 ? B 1105 ? ? 1 1 B G 5 1_555 B C 54 1_555 -1.992 -0.696 -0.243 -5.793 -4.502 0.659 5 B_G1055:C1104_B B 1055 ? B 1104 ? 19 1 1 B G 6 1_555 B A 53 1_555 6.763 -3.758 0.462 12.587 10.704 11.304 6 B_G1056:A1103_B B 1056 ? B 1103 ? 11 9 1 B G 37 1_555 B C 52 1_555 -1.255 -0.227 0.050 0.717 -1.149 -1.685 7 B_G1087:C1102_B B 1087 ? B 1102 ? 19 1 1 B U 40 1_555 B U 51 1_555 -3.161 -1.752 0.002 -1.899 -1.080 30.561 8 B_U1090:U1101_B B 1090 ? B 1101 ? 16 1 1 B G 41 1_555 B C 50 1_555 -1.835 -0.294 -0.150 -2.365 0.304 13.478 9 B_G1091:C1100_B B 1091 ? B 1100 ? ? 1 1 B C 42 1_555 B G 49 1_555 1.686 -0.431 -0.161 -0.180 1.610 3.672 10 B_C1092:G1099_B B 1092 ? B 1099 ? 19 1 1 B G 43 1_555 B C 22 1_555 -0.402 3.369 1.536 25.005 28.437 109.130 11 B_G1093:C1072_B B 1093 ? B 1072 ? ? ? 1 B U 8 1_555 B A 30 1_555 -1.404 0.098 0.054 2.491 -4.162 -16.842 12 B_U1058:A1080_B B 1058 ? B 1080 ? 20 1 1 B G 9 1_555 B C 29 1_555 -0.602 -0.186 0.103 -0.586 -5.404 -0.315 13 B_G1059:C1079_B B 1059 ? B 1079 ? 19 1 1 B U 10 1_555 B A 38 1_555 -2.395 4.343 0.094 -3.673 -1.173 -94.526 14 B_U1060:A1088_B B 1060 ? B 1088 ? 23 3 1 B G 12 1_555 B C 26 1_555 -0.930 -0.078 0.086 0.748 -3.955 -9.052 15 B_G1062:C1076_B B 1062 ? B 1076 ? ? 1 1 B G 13 1_555 B C 25 1_555 -0.630 -0.203 0.068 -0.641 -1.161 7.117 16 B_G1063:C1075_B B 1063 ? B 1075 ? 19 1 1 B C 14 1_555 B G 24 1_555 2.047 -0.604 -0.066 -2.960 -3.279 7.270 17 B_C1064:G1074_B B 1064 ? B 1074 ? 19 1 1 B U 32 1_555 B A 36 1_555 0.054 -2.643 0.294 -6.272 1.121 -150.030 18 B_U1082:A1086_B B 1082 ? B 1086 ? 21 2 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 B C 58 1_555 B C 2 1_555 B G 57 1_555 -0.216 -1.302 3.298 1.713 -0.757 43.853 -1.669 0.453 3.309 -1.013 -2.292 43.891 1 BB_G1051C1052:G1107C1108_BB B 1051 ? B 1108 ? B 1052 ? B 1107 ? 1 B C 2 1_555 B G 57 1_555 B U 3 1_555 B A 56 1_555 -0.461 -1.892 2.902 5.365 20.716 24.232 -5.893 1.474 0.921 40.652 -10.528 32.222 2 BB_C1052U1053:A1106G1107_BB B 1052 ? B 1107 ? B 1053 ? B 1106 ? 1 B U 3 1_555 B A 56 1_555 B G 4 1_555 B C 55 1_555 0.673 -1.456 2.625 1.080 29.849 28.038 -4.172 -0.891 0.799 47.722 -1.726 40.747 3 BB_U1053G1054:C1105A1106_BB B 1053 ? B 1106 ? B 1054 ? B 1105 ? 1 B G 4 1_555 B C 55 1_555 B G 5 1_555 B C 54 1_555 -0.768 -1.748 3.753 -1.034 -7.075 23.906 -1.447 1.397 4.120 -16.610 2.428 24.937 4 BB_G1054G1055:C1104C1105_BB B 1054 ? B 1105 ? B 1055 ? B 1104 ? 1 B G 5 1_555 B C 54 1_555 B G 6 1_555 B A 53 1_555 0.308 0.097 2.696 4.968 24.785 74.727 -0.505 -0.127 2.635 19.884 -3.985 78.292 5 BB_G1055G1056:A1103C1104_BB B 1055 ? B 1104 ? B 1056 ? B 1103 ? 1 B G 6 1_555 B A 53 1_555 B G 37 1_555 B C 52 1_555 -3.531 0.503 3.617 1.408 -4.772 31.478 1.849 6.708 3.349 -8.728 -2.576 31.859 6 BB_G1056G1087:C1102A1103_BB B 1056 ? B 1103 ? B 1087 ? B 1102 ? 1 B G 37 1_555 B C 52 1_555 B U 40 1_555 B U 51 1_555 0.120 -2.305 5.097 10.336 -1.532 42.039 -2.890 1.431 5.065 -2.097 -14.147 43.261 7 BB_G1087U1090:U1101C1102_BB B 1087 ? B 1102 ? B 1090 ? B 1101 ? 1 B U 40 1_555 B U 51 1_555 B G 41 1_555 B C 50 1_555 1.116 -1.739 3.121 1.725 3.661 30.403 -3.961 -1.793 2.953 6.943 -3.270 30.665 8 BB_U1090G1091:C1100U1101_BB B 1090 ? B 1101 ? B 1091 ? B 1100 ? 1 B G 41 1_555 B C 50 1_555 B C 42 1_555 B G 49 1_555 -1.745 -1.123 3.328 6.637 7.048 43.298 -2.114 2.902 2.837 9.412 -8.864 44.316 9 BB_G1091C1092:G1099C1100_BB B 1091 ? B 1100 ? B 1092 ? B 1099 ? 1 B C 42 1_555 B G 49 1_555 B G 43 1_555 B C 22 1_555 4.386 -0.532 1.621 -4.421 -2.932 1.792 -9.688 -38.514 -2.665 -39.431 59.461 5.599 10 BB_C1092G1093:C1072G1099_BB B 1092 ? B 1099 ? B 1093 ? B 1072 ? 1 B U 8 1_555 B A 30 1_555 B G 9 1_555 B C 29 1_555 0.542 -2.146 2.976 -7.177 27.379 43.575 -3.831 -0.981 1.384 33.072 8.669 51.582 11 BB_U1058G1059:C1079A1080_BB B 1058 ? B 1080 ? B 1059 ? B 1079 ? 1 B G 9 1_555 B C 29 1_555 B U 10 1_555 B A 38 1_555 4.236 -1.396 -1.628 -15.630 -158.921 -167.624 0.610 2.127 -1.722 79.518 -7.821 -177.822 12 BB_G1059U1060:A1088C1079_BB B 1059 ? B 1079 ? B 1060 ? B 1088 ? 1 B G 12 1_555 B C 26 1_555 B G 13 1_555 B C 25 1_555 0.757 -0.506 4.629 4.157 9.270 38.011 -2.309 -0.428 4.445 13.931 -6.247 39.297 13 BB_G1062G1063:C1075C1076_BB B 1062 ? B 1076 ? B 1063 ? B 1075 ? 1 B G 13 1_555 B C 25 1_555 B C 14 1_555 B G 24 1_555 2.954 0.198 3.348 -4.283 45.250 29.157 -2.808 -3.563 1.802 58.733 5.559 53.580 14 BB_G1063C1064:G1074C1075_BB B 1063 ? B 1075 ? B 1064 ? B 1074 ? #