data_2JXA # _entry.id 2JXA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2JXA RCSB RCSB100406 WWPDB D_1000100406 # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.content_type 15553 BMRB 'Chemical shift assignments for this protein' unspecified 2JX9 PDB 'Structure of free protein' unspecified # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2JXA _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2007-11-09 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vakonakis, I.' 1 'Campbell, I.D.' 2 # _citation.id primary _citation.title 'Solution structure and sugar-binding mechanism of mouse Latrophilin-1 RBL: a novel 7TM receptor-attached lectin-like domain.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vakonakis, I.' 1 ? primary 'Langenhan, T.' 2 ? primary 'Promel, S.' 3 ? primary 'Russ, A.' 4 ? primary 'Campbell, I.D.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Latrophilin 1' 11997.645 1 ? ? Gal_lectin ? 2 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 3 non-polymer man alpha-L-rhamnopyranose 164.156 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GLPFGLMRRELACEGYPIELRCPGSDVIMVENANYGRTDDKICDADPFQMENVQCYLPDAFKIMSQRCNNRTQCVVVAGS DAFPDPCPGTYKYLEVQYDCVPYKVE ; _entity_poly.pdbx_seq_one_letter_code_can ;GLPFGLMRRELACEGYPIELRCPGSDVIMVENANYGRTDDKICDADPFQMENVQCYLPDAFKIMSQRCNNRTQCVVVAGS DAFPDPCPGTYKYLEVQYDCVPYKVE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LEU n 1 3 PRO n 1 4 PHE n 1 5 GLY n 1 6 LEU n 1 7 MET n 1 8 ARG n 1 9 ARG n 1 10 GLU n 1 11 LEU n 1 12 ALA n 1 13 CYS n 1 14 GLU n 1 15 GLY n 1 16 TYR n 1 17 PRO n 1 18 ILE n 1 19 GLU n 1 20 LEU n 1 21 ARG n 1 22 CYS n 1 23 PRO n 1 24 GLY n 1 25 SER n 1 26 ASP n 1 27 VAL n 1 28 ILE n 1 29 MET n 1 30 VAL n 1 31 GLU n 1 32 ASN n 1 33 ALA n 1 34 ASN n 1 35 TYR n 1 36 GLY n 1 37 ARG n 1 38 THR n 1 39 ASP n 1 40 ASP n 1 41 LYS n 1 42 ILE n 1 43 CYS n 1 44 ASP n 1 45 ALA n 1 46 ASP n 1 47 PRO n 1 48 PHE n 1 49 GLN n 1 50 MET n 1 51 GLU n 1 52 ASN n 1 53 VAL n 1 54 GLN n 1 55 CYS n 1 56 TYR n 1 57 LEU n 1 58 PRO n 1 59 ASP n 1 60 ALA n 1 61 PHE n 1 62 LYS n 1 63 ILE n 1 64 MET n 1 65 SER n 1 66 GLN n 1 67 ARG n 1 68 CYS n 1 69 ASN n 1 70 ASN n 1 71 ARG n 1 72 THR n 1 73 GLN n 1 74 CYS n 1 75 VAL n 1 76 VAL n 1 77 VAL n 1 78 ALA n 1 79 GLY n 1 80 SER n 1 81 ASP n 1 82 ALA n 1 83 PHE n 1 84 PRO n 1 85 ASP n 1 86 PRO n 1 87 CYS n 1 88 PRO n 1 89 GLY n 1 90 THR n 1 91 TYR n 1 92 LYS n 1 93 TYR n 1 94 LEU n 1 95 GLU n 1 96 VAL n 1 97 GLN n 1 98 TYR n 1 99 ASP n 1 100 CYS n 1 101 VAL n 1 102 PRO n 1 103 TYR n 1 104 LYS n 1 105 VAL n 1 106 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene Lphn1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus Pichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain X-33 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ;gene construct integrated in the organism's genome ; # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5U4D5_MOUSE _struct_ref.pdbx_db_accession Q5U4D5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GLPFGLMRRELACEGYPIELRCPGSDVIMVENANYGRTDDKICDADPFQMENVQCYLPDAFKIMSQRCNNRTQCVVVAGS DAFPDPCPGTYKYLEVQYDCVPYKVE ; _struct_ref.pdbx_align_begin 29 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JXA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 106 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5U4D5 _struct_ref_seq.db_align_beg 29 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 134 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 29 _struct_ref_seq.pdbx_auth_seq_align_end 134 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RAM 'L-saccharide, alpha linking' . alpha-L-rhamnopyranose ? 'C6 H12 O5' 164.156 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 2 '2D 1H-13C HSQC' 1 3 1 '3D HNHA' 1 4 1 '3D 1H-15N NOESY' 1 5 1 '3D HNHB' 1 6 2 '4D 13C/13C NOESY' 1 7 2 '2D 13C methyl-carbonyl' 1 8 2 '2D 13C methyl-nitrogen' 1 9 2 '2D 13C methyl-ca' 1 10 3 '15N IPAP-HSQC' 1 11 5 '3D 1H-15N NOESY' 1 12 4 '2D 13C-purged/13C-filtered NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 30 _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '1-2 mM [U-100% 15N] protein, 20 mM sodium phosphate, 0.1 mM DSS, 0.02 % sodium azide; 95% H2O/5% D2O' 1 '95% H2O/5% D2O' '1-2 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate, 0.1 mM DSS, 0.02 % sodium azide; 100% D2O' 2 '100% D2O' ;1-2 mM [U-100% 15N] protein, 20 mM sodium phosphate, 0.1 mM DSS, 0.02 % sodium azide, 4 % PEG C12E5, 0.96 molecular ratio hexanol; 95% H2O/5% D2O ; 3 '95% H2O/5% D2O' '1-2 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate, 0.1 mM DSS, 0.02 % sodium azide, 10 mM L-Rhamnose; 100% D2O' 4 '100% D2O' '1-2 mM [U-100% 15N] protein, 20 mM sodium phosphate, 0.1 mM DSS, 0.02 % sodium azide, 10 mM L-Rhamnose; 95% H2O/5% D2O' 5 '95% H2O/5% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 750 ? ? 1 ? 600 ? ? 2 ? 500 ? ? 3 ? 950 ? ? 4 ? # _pdbx_nmr_refine.entry_id 2JXA _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'Simulated annealing in the presence of Rhamnose starting from average apo-protein coordinates' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 25 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2JXA _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2JXA _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal GE/Bruker collection Omega 'Beta 6.0.3b2' 1 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe '2.4 Rev 2006.095.11.35' 2 Garrett 'data analysis' PIPP 4.3.7 3 Garrett 'peak picking' PIPP 4.3.7 4 'Schwieters, Kuszewski, Tjandra, Clore' 'geometry optimization' 'X-PLOR NIH' 2.17.0 5 'Schwieters, Kuszewski, Tjandra, Clore' refinement 'X-PLOR NIH' 2.17.0 6 'Schwieters, Kuszewski, Tjandra, Clore' 'structure solution' 'X-PLOR NIH' 2.17.0 7 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2JXA _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2JXA _struct.title 'Mouse Latrophilin-1 GPCR Gal_lectin domain in complex with Rhamnose' _struct.pdbx_descriptor 'Latrophilin 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JXA _struct_keywords.pdbx_keywords 'CELL ADHESION, SIGNALING PROTEIN' _struct_keywords.text ;Lectin, beta-sandwich, disulphide, glycosylated, L-Rhamnose, complex, G-protein coupled receptor, Membrane, Receptor, Transducer, Transmembrane, CELL ADHESION, SIGNALING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 46 ? GLU A 51 ? ASP A 74 GLU A 79 1 ? 6 HELX_P HELX_P2 2 PRO A 58 ? ASN A 69 ? PRO A 86 ASN A 97 1 ? 12 HELX_P HELX_P3 3 GLY A 79 ? PHE A 83 ? GLY A 107 PHE A 111 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 13 SG ? ? ? 1_555 A CYS 43 SG ? ? A CYS 41 A CYS 71 1_555 ? ? ? ? ? ? ? 2.020 ? ? disulf2 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 100 SG ? ? A CYS 50 A CYS 128 1_555 ? ? ? ? ? ? ? 2.024 ? ? disulf3 disulf ? ? A CYS 55 SG ? ? ? 1_555 A CYS 87 SG ? ? A CYS 83 A CYS 115 1_555 ? ? ? ? ? ? ? 2.021 ? ? disulf4 disulf ? ? A CYS 68 SG ? ? ? 1_555 A CYS 74 SG ? ? A CYS 96 A CYS 102 1_555 ? ? ? ? ? ? ? 2.020 ? ? covale1 covale one ? A ASN 70 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 98 A NAG 135 1_555 ? ? ? ? ? ? ? 1.448 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 8 ? CYS A 13 ? ARG A 36 CYS A 41 A 2 TYR A 93 ? PRO A 102 ? TYR A 121 PRO A 130 A 3 ASP A 26 ? GLY A 36 ? ASP A 54 GLY A 64 B 1 PRO A 17 ? ARG A 21 ? PRO A 45 ARG A 49 B 2 GLN A 73 ? VAL A 77 ? GLN A 101 VAL A 105 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 8 ? N ARG A 36 O TYR A 98 ? O TYR A 126 A 2 3 O GLN A 97 ? O GLN A 125 N ASN A 32 ? N ASN A 60 B 1 2 N ILE A 18 ? N ILE A 46 O VAL A 76 ? O VAL A 104 # _atom_sites.entry_id 2JXA _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 29 29 GLY GLY A . n A 1 2 LEU 2 30 30 LEU LEU A . n A 1 3 PRO 3 31 31 PRO PRO A . n A 1 4 PHE 4 32 32 PHE PHE A . n A 1 5 GLY 5 33 33 GLY GLY A . n A 1 6 LEU 6 34 34 LEU LEU A . n A 1 7 MET 7 35 35 MET MET A . n A 1 8 ARG 8 36 36 ARG ARG A . n A 1 9 ARG 9 37 37 ARG ARG A . n A 1 10 GLU 10 38 38 GLU GLU A . n A 1 11 LEU 11 39 39 LEU LEU A . n A 1 12 ALA 12 40 40 ALA ALA A . n A 1 13 CYS 13 41 41 CYS CYS A . n A 1 14 GLU 14 42 42 GLU GLU A . n A 1 15 GLY 15 43 43 GLY GLY A . n A 1 16 TYR 16 44 44 TYR TYR A . n A 1 17 PRO 17 45 45 PRO PRO A . n A 1 18 ILE 18 46 46 ILE ILE A . n A 1 19 GLU 19 47 47 GLU GLU A . n A 1 20 LEU 20 48 48 LEU LEU A . n A 1 21 ARG 21 49 49 ARG ARG A . n A 1 22 CYS 22 50 50 CYS CYS A . n A 1 23 PRO 23 51 51 PRO PRO A . n A 1 24 GLY 24 52 52 GLY GLY A . n A 1 25 SER 25 53 53 SER SER A . n A 1 26 ASP 26 54 54 ASP ASP A . n A 1 27 VAL 27 55 55 VAL VAL A . n A 1 28 ILE 28 56 56 ILE ILE A . n A 1 29 MET 29 57 57 MET MET A . n A 1 30 VAL 30 58 58 VAL VAL A . n A 1 31 GLU 31 59 59 GLU GLU A . n A 1 32 ASN 32 60 60 ASN ASN A . n A 1 33 ALA 33 61 61 ALA ALA A . n A 1 34 ASN 34 62 62 ASN ASN A . n A 1 35 TYR 35 63 63 TYR TYR A . n A 1 36 GLY 36 64 64 GLY GLY A . n A 1 37 ARG 37 65 65 ARG ARG A . n A 1 38 THR 38 66 66 THR THR A . n A 1 39 ASP 39 67 67 ASP ASP A . n A 1 40 ASP 40 68 68 ASP ASP A . n A 1 41 LYS 41 69 69 LYS LYS A . n A 1 42 ILE 42 70 70 ILE ILE A . n A 1 43 CYS 43 71 71 CYS CYS A . n A 1 44 ASP 44 72 72 ASP ASP A . n A 1 45 ALA 45 73 73 ALA ALA A . n A 1 46 ASP 46 74 74 ASP ASP A . n A 1 47 PRO 47 75 75 PRO PRO A . n A 1 48 PHE 48 76 76 PHE PHE A . n A 1 49 GLN 49 77 77 GLN GLN A . n A 1 50 MET 50 78 78 MET MET A . n A 1 51 GLU 51 79 79 GLU GLU A . n A 1 52 ASN 52 80 80 ASN ASN A . n A 1 53 VAL 53 81 81 VAL VAL A . n A 1 54 GLN 54 82 82 GLN GLN A . n A 1 55 CYS 55 83 83 CYS CYS A . n A 1 56 TYR 56 84 84 TYR TYR A . n A 1 57 LEU 57 85 85 LEU LEU A . n A 1 58 PRO 58 86 86 PRO PRO A . n A 1 59 ASP 59 87 87 ASP ASP A . n A 1 60 ALA 60 88 88 ALA ALA A . n A 1 61 PHE 61 89 89 PHE PHE A . n A 1 62 LYS 62 90 90 LYS LYS A . n A 1 63 ILE 63 91 91 ILE ILE A . n A 1 64 MET 64 92 92 MET MET A . n A 1 65 SER 65 93 93 SER SER A . n A 1 66 GLN 66 94 94 GLN GLN A . n A 1 67 ARG 67 95 95 ARG ARG A . n A 1 68 CYS 68 96 96 CYS CYS A . n A 1 69 ASN 69 97 97 ASN ASN A . n A 1 70 ASN 70 98 98 ASN ASN A . n A 1 71 ARG 71 99 99 ARG ARG A . n A 1 72 THR 72 100 100 THR THR A . n A 1 73 GLN 73 101 101 GLN GLN A . n A 1 74 CYS 74 102 102 CYS CYS A . n A 1 75 VAL 75 103 103 VAL VAL A . n A 1 76 VAL 76 104 104 VAL VAL A . n A 1 77 VAL 77 105 105 VAL VAL A . n A 1 78 ALA 78 106 106 ALA ALA A . n A 1 79 GLY 79 107 107 GLY GLY A . n A 1 80 SER 80 108 108 SER SER A . n A 1 81 ASP 81 109 109 ASP ASP A . n A 1 82 ALA 82 110 110 ALA ALA A . n A 1 83 PHE 83 111 111 PHE PHE A . n A 1 84 PRO 84 112 112 PRO PRO A . n A 1 85 ASP 85 113 113 ASP ASP A . n A 1 86 PRO 86 114 114 PRO PRO A . n A 1 87 CYS 87 115 115 CYS CYS A . n A 1 88 PRO 88 116 116 PRO PRO A . n A 1 89 GLY 89 117 117 GLY GLY A . n A 1 90 THR 90 118 118 THR THR A . n A 1 91 TYR 91 119 119 TYR TYR A . n A 1 92 LYS 92 120 120 LYS LYS A . n A 1 93 TYR 93 121 121 TYR TYR A . n A 1 94 LEU 94 122 122 LEU LEU A . n A 1 95 GLU 95 123 123 GLU GLU A . n A 1 96 VAL 96 124 124 VAL VAL A . n A 1 97 GLN 97 125 125 GLN GLN A . n A 1 98 TYR 98 126 126 TYR TYR A . n A 1 99 ASP 99 127 127 ASP ASP A . n A 1 100 CYS 100 128 128 CYS CYS A . n A 1 101 VAL 101 129 129 VAL VAL A . n A 1 102 PRO 102 130 130 PRO PRO A . n A 1 103 TYR 103 131 131 TYR TYR A . n A 1 104 LYS 104 132 132 LYS LYS A . n A 1 105 VAL 105 133 133 VAL VAL A . n A 1 106 GLU 106 134 134 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG 1 135 135 NAG NAG A . C 3 RAM 1 136 136 RAM RAM A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 70 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 98 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' entity 3 3 'Structure model' pdbx_chem_comp_identifier 4 3 'Structure model' pdbx_entity_nonpoly 5 3 'Structure model' pdbx_nmr_software 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site 8 3 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.name' 2 3 'Structure model' '_chem_comp.type' 3 3 'Structure model' '_entity.pdbx_description' 4 3 'Structure model' '_pdbx_entity_nonpoly.name' 5 3 'Structure model' '_pdbx_nmr_software.name' 6 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 3 'Structure model' '_struct_conn.pdbx_role' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id protein 1 mM '[U-100% 15N]' 1 D2O 5 % ? 1 'sodium phosphate' 20 mM ? 1 DSS 0.1 mM ? 1 'sodium azide' 0.02 % ? 1 protein 1 mM '[U-100% 13C; U-100% 15N]' 2 D2O 100 % ? 2 'sodium phosphate' 20 mM ? 2 DSS 0.1 mM ? 2 'sodium azide' 0.02 % ? 2 protein 1 mM '[U-100% 15N]' 3 D2O 5 % ? 3 'sodium phosphate' 20 mM ? 3 DSS 0.1 mM ? 3 'sodium azide' 0.02 % ? 3 'PEG C12E5' 4 % ? 3 hexanol 0.96 % ? 3 protein 1 mM '[U-100% 13C; U-100% 15N]' 4 D2O 100 % ? 4 'sodium phosphate' 20 mM ? 4 DSS 0.1 mM ? 4 'sodium azide' 0.02 % ? 4 L-Rhamnose 10 mM ? 4 protein 1 mM '[U-100% 15N]' 5 D2O 5 % ? 5 'sodium phosphate' 20 mM ? 5 DSS 0.1 mM ? 5 'sodium azide' 0.02 % ? 5 L-Rhamnose 10 mM ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HZ2 A LYS 120 ? ? HO3 A RAM 136 ? ? 1.18 2 1 H A THR 66 ? ? HH A TYR 121 ? ? 1.32 3 1 OD2 A ASP 67 ? ? H A LYS 69 ? ? 1.55 4 1 H A THR 66 ? ? OH A TYR 121 ? ? 1.58 5 1 OE2 A GLU 47 ? ? HE A ARG 49 ? ? 1.58 6 1 OE2 A GLU 42 ? ? O3 A RAM 136 ? ? 2.19 7 1 O A THR 118 ? ? O4 A RAM 136 ? ? 2.19 8 2 HZ2 A LYS 120 ? ? HO4 A RAM 136 ? ? 1.29 9 2 O A GLN 77 ? ? H A TYR 119 ? ? 1.44 10 2 HE A ARG 37 ? ? OE2 A GLU 123 ? ? 1.46 11 2 HH11 A ARG 65 ? ? O A ASP 67 ? ? 1.54 12 2 OD1 A ASP 67 ? ? H A ASP 68 ? ? 1.56 13 2 HE A ARG 65 ? ? O A TYR 119 ? ? 1.58 14 2 H A ILE 56 ? ? O A ARG 99 ? ? 1.60 15 3 H A THR 66 ? ? HH A TYR 121 ? ? 1.18 16 3 HG1 A THR 66 ? ? OH A TYR 121 ? ? 1.49 17 3 HH22 A ARG 65 ? ? O A ILE 70 ? ? 1.50 18 3 OD1 A ASP 67 ? ? H A ASP 68 ? ? 1.55 19 3 OE2 A GLU 47 ? ? HE A ARG 49 ? ? 1.56 20 3 O A GLN 77 ? ? H A TYR 119 ? ? 1.57 21 3 OE2 A GLU 42 ? ? HO3 A RAM 136 ? ? 1.58 22 4 HH22 A ARG 65 ? ? O A ILE 70 ? ? 1.55 23 4 O A VAL 105 ? ? H A GLY 107 ? ? 1.59 24 4 OD1 A ASN 62 ? ? H A LEU 85 ? ? 1.60 25 5 HH A TYR 63 ? ? HZ3 A LYS 120 ? ? 1.23 26 5 H A ILE 56 ? ? O A ARG 99 ? ? 1.58 27 5 OH A TYR 63 ? ? HZ3 A LYS 120 ? ? 1.59 28 5 O A THR 118 ? ? O4 A RAM 136 ? ? 2.19 29 6 HH22 A ARG 65 ? ? O A ILE 70 ? ? 1.46 30 6 HH12 A ARG 36 ? ? O A ARG 49 ? ? 1.55 31 6 OE1 A GLU 42 ? ? HO4 A RAM 136 ? ? 1.57 32 6 H A ILE 56 ? ? O A ARG 99 ? ? 1.58 33 6 OE2 A GLU 42 ? ? O3 A RAM 136 ? ? 2.18 34 7 H A GLY 117 ? ? HO2 A RAM 136 ? ? 1.23 35 7 OE2 A GLU 47 ? ? HH21 A ARG 49 ? ? 1.55 36 7 H A ILE 56 ? ? O A ARG 99 ? ? 1.55 37 7 HH22 A ARG 65 ? ? O A ILE 70 ? ? 1.56 38 7 OD1 A ASN 62 ? ? H A LEU 85 ? ? 1.57 39 7 OE2 A GLU 47 ? ? HE A ARG 49 ? ? 1.59 40 7 OG1 A THR 66 ? ? OH A TYR 121 ? ? 2.19 41 8 H A ILE 56 ? ? O A ARG 99 ? ? 1.53 42 8 OD1 A ASP 67 ? ? H A ASP 68 ? ? 1.56 43 8 H A THR 66 ? ? OH A TYR 121 ? ? 1.57 44 8 OD2 A ASP 74 ? ? NE2 A GLN 77 ? ? 2.18 45 9 HZ3 A LYS 120 ? ? HO4 A RAM 136 ? ? 1.13 46 9 HG A SER 108 ? ? H A ASP 109 ? ? 1.21 47 9 H A THR 66 ? ? OH A TYR 121 ? ? 1.44 48 9 O A GLN 77 ? ? H A TYR 119 ? ? 1.50 49 9 OE2 A GLU 47 ? ? HE A ARG 49 ? ? 1.53 50 9 H A VAL 55 ? ? O A VAL 129 ? ? 1.59 51 9 OD1 A ASP 74 ? ? HE21 A GLN 77 ? ? 1.59 52 9 O A THR 118 ? ? O4 A RAM 136 ? ? 2.15 53 9 OE1 A GLU 42 ? ? O4 A RAM 136 ? ? 2.19 54 10 H A GLY 117 ? ? HO2 A RAM 136 ? ? 1.20 55 10 OE2 A GLU 47 ? ? HH21 A ARG 49 ? ? 1.53 56 10 OE2 A GLU 47 ? ? HE A ARG 49 ? ? 1.53 57 10 OG1 A THR 66 ? ? OH A TYR 121 ? ? 2.19 58 11 OG A SER 108 ? ? H A ASP 109 ? ? 1.58 59 11 H A CYS 50 ? ? O A THR 100 ? ? 1.59 60 12 HE A ARG 65 ? ? O A ASP 67 ? ? 1.55 61 13 OD2 A ASP 67 ? ? H A LYS 69 ? ? 1.50 62 13 H A ILE 56 ? ? O A ARG 99 ? ? 1.56 63 13 O A ARG 95 ? ? HE A ARG 99 ? ? 1.57 64 13 H A THR 66 ? ? OH A TYR 121 ? ? 1.59 65 13 O A GLU 38 ? ? OE2 A GLU 123 ? ? 2.19 66 14 H A ILE 56 ? ? O A ARG 99 ? ? 1.57 67 14 H A CYS 50 ? ? O A THR 100 ? ? 1.58 68 14 OG1 A THR 66 ? ? OH A TYR 121 ? ? 2.16 69 15 OD2 A ASP 67 ? ? H A LYS 69 ? ? 1.51 70 15 H A ILE 56 ? ? O A ARG 99 ? ? 1.55 71 15 H A CYS 50 ? ? O A THR 100 ? ? 1.58 72 16 H A THR 66 ? ? OH A TYR 121 ? ? 1.56 73 16 OE2 A GLU 47 ? ? HE A ARG 49 ? ? 1.57 74 16 HE A ARG 65 ? ? O A TYR 119 ? ? 1.60 75 17 HZ2 A LYS 120 ? ? HO3 A RAM 136 ? ? 1.18 76 17 H A ILE 56 ? ? O A ARG 99 ? ? 1.56 77 17 HE A ARG 37 ? ? OE2 A GLU 123 ? ? 1.57 78 17 OE1 A GLU 42 ? ? HZ1 A LYS 120 ? ? 1.59 79 18 HZ3 A LYS 120 ? ? HO3 A RAM 136 ? ? 1.12 80 18 OD1 A ASP 74 ? ? H A GLN 77 ? ? 1.50 81 18 H A ILE 56 ? ? O A ARG 99 ? ? 1.51 82 18 OE2 A GLU 47 ? ? HH21 A ARG 49 ? ? 1.55 83 18 HZ3 A LYS 120 ? ? O3 A RAM 136 ? ? 1.59 84 19 HE A ARG 36 ? ? HH A TYR 126 ? ? 1.31 85 19 HE A ARG 36 ? ? OH A TYR 126 ? ? 1.52 86 19 OE1 A GLU 42 ? ? HO4 A RAM 136 ? ? 1.53 87 19 H A ILE 56 ? ? O A ARG 99 ? ? 1.56 88 19 O A GLN 77 ? ? H A TYR 119 ? ? 1.57 89 19 OD1 A ASP 67 ? ? H A ASP 68 ? ? 1.57 90 19 O A THR 118 ? ? O4 A RAM 136 ? ? 2.18 91 20 HH12 A ARG 36 ? ? H A CYS 128 ? ? 1.26 92 20 H A THR 66 ? ? OH A TYR 121 ? ? 1.55 93 20 H A VAL 55 ? ? O A VAL 129 ? ? 1.58 94 20 OE2 A GLU 47 ? ? HH21 A ARG 49 ? ? 1.60 95 21 H A ILE 56 ? ? O A ARG 99 ? ? 1.56 96 21 OE2 A GLU 47 ? ? HH21 A ARG 49 ? ? 1.57 97 21 H A VAL 55 ? ? O A VAL 129 ? ? 1.59 98 21 OE2 A GLU 47 ? ? HE A ARG 49 ? ? 1.60 99 22 O A GLN 77 ? ? H A TYR 119 ? ? 1.53 100 22 HH22 A ARG 65 ? ? O A ILE 70 ? ? 1.54 101 23 O A VAL 105 ? ? H A GLY 107 ? ? 1.58 102 24 H A THR 66 ? ? HH A TYR 121 ? ? 1.19 103 24 OE1 A GLU 42 ? ? HO4 A RAM 136 ? ? 1.54 104 24 HE A ARG 36 ? ? OH A TYR 126 ? ? 1.54 105 24 O A GLN 94 ? ? HH22 A ARG 99 ? ? 1.55 106 24 OE2 A GLU 47 ? ? HH21 A ARG 49 ? ? 1.55 107 24 HZ3 A LYS 120 ? ? O3 A RAM 136 ? ? 1.56 108 24 OE1 A GLU 42 ? ? HZ1 A LYS 120 ? ? 1.60 109 24 OE1 A GLU 38 ? ? O A GLU 47 ? ? 2.19 110 25 HH11 A ARG 65 ? ? O A TYR 119 ? ? 1.53 111 25 O A GLN 77 ? ? H A TYR 119 ? ? 1.57 112 25 OD1 A ASP 67 ? ? H A LYS 69 ? ? 1.60 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 31 ? ? -82.76 -157.02 2 1 MET A 35 ? ? 47.96 117.75 3 1 ASP A 72 ? ? -47.99 109.52 4 1 ALA A 73 ? ? -128.35 -164.81 5 1 ALA A 106 ? ? -68.01 37.44 6 1 SER A 108 ? ? 36.64 -154.84 7 1 PRO A 112 ? ? -48.61 -158.84 8 1 LYS A 120 ? ? -76.51 -163.01 9 2 LEU A 34 ? ? -155.36 55.89 10 2 MET A 35 ? ? 57.91 150.64 11 2 ASP A 68 ? ? -146.04 -0.51 12 2 ASP A 72 ? ? 1.43 105.09 13 2 ALA A 73 ? ? -121.70 -166.15 14 2 ALA A 106 ? ? -71.36 38.38 15 2 SER A 108 ? ? 31.04 -158.90 16 2 PRO A 112 ? ? -48.76 -163.89 17 2 LYS A 120 ? ? -81.99 -159.27 18 2 TYR A 131 ? ? -72.24 -96.08 19 2 LYS A 132 ? ? -90.29 -74.13 20 3 MET A 35 ? ? 58.06 153.90 21 3 ASP A 68 ? ? -144.55 -0.33 22 3 CYS A 71 ? ? 57.25 70.56 23 3 ALA A 106 ? ? -66.81 23.56 24 3 SER A 108 ? ? 94.79 -155.55 25 3 PRO A 112 ? ? -50.64 -156.15 26 3 LYS A 120 ? ? -76.05 -165.61 27 4 MET A 35 ? ? 50.26 134.59 28 4 CYS A 71 ? ? 53.77 71.36 29 4 ALA A 106 ? ? -66.57 42.79 30 4 SER A 108 ? ? 35.82 -150.78 31 4 PRO A 112 ? ? -52.01 -153.07 32 4 LYS A 120 ? ? -68.12 -156.33 33 5 LEU A 34 ? ? -163.71 118.50 34 5 MET A 35 ? ? 52.97 108.46 35 5 ALA A 106 ? ? -68.71 38.71 36 5 SER A 108 ? ? 31.36 -158.03 37 5 PRO A 112 ? ? -49.95 -159.61 38 5 CYS A 115 ? ? -155.67 83.84 39 5 LYS A 120 ? ? -77.58 -166.78 40 6 MET A 35 ? ? 53.95 150.78 41 6 CYS A 71 ? ? 54.63 70.79 42 6 ALA A 106 ? ? -70.98 41.76 43 6 SER A 108 ? ? 31.58 -146.56 44 6 PRO A 112 ? ? -52.18 -150.20 45 6 CYS A 115 ? ? -157.12 80.37 46 6 LYS A 120 ? ? -71.47 -165.97 47 6 TYR A 131 ? ? -72.76 -143.09 48 6 LYS A 132 ? ? -90.82 -81.71 49 7 MET A 35 ? ? 55.02 136.73 50 7 ALA A 106 ? ? -69.94 41.77 51 7 SER A 108 ? ? 31.04 -157.06 52 7 PRO A 112 ? ? -49.62 -161.69 53 7 LYS A 120 ? ? -76.40 -161.19 54 7 TYR A 131 ? ? -78.19 -77.31 55 8 MET A 35 ? ? 47.59 165.45 56 8 ASP A 68 ? ? -148.17 -0.40 57 8 ALA A 73 ? ? -129.29 -162.18 58 8 ALA A 106 ? ? -69.05 30.94 59 8 SER A 108 ? ? 95.95 -158.45 60 8 PRO A 112 ? ? -46.24 -159.49 61 8 LYS A 120 ? ? -73.35 -156.22 62 9 LEU A 30 ? ? 29.22 87.44 63 9 LEU A 34 ? ? -158.72 39.61 64 9 MET A 35 ? ? 64.43 143.66 65 9 ASP A 68 ? ? -146.92 -2.06 66 9 ALA A 106 ? ? -70.28 41.59 67 9 SER A 108 ? ? 31.06 -155.29 68 9 PRO A 112 ? ? -47.66 -157.86 69 9 LYS A 120 ? ? -74.27 -168.49 70 9 TYR A 131 ? ? -74.68 -96.25 71 10 PRO A 31 ? ? -38.69 -118.89 72 10 LEU A 34 ? ? -162.18 110.33 73 10 MET A 35 ? ? 58.48 151.13 74 10 ALA A 106 ? ? -71.60 44.48 75 10 SER A 108 ? ? 28.13 -153.34 76 10 PRO A 112 ? ? -47.74 -158.70 77 10 LYS A 120 ? ? -74.58 -165.84 78 10 TYR A 131 ? ? -72.13 -83.37 79 11 PHE A 32 ? ? -153.55 -49.06 80 11 LEU A 34 ? ? -160.82 119.33 81 11 MET A 35 ? ? 49.91 109.98 82 11 ASP A 68 ? ? -150.55 -2.79 83 11 CYS A 71 ? ? 60.19 63.21 84 11 ALA A 106 ? ? -70.90 42.46 85 11 SER A 108 ? ? 28.94 -155.37 86 11 PRO A 112 ? ? -47.70 -157.69 87 11 LYS A 120 ? ? -75.78 -154.10 88 11 TYR A 131 ? ? -73.30 -77.19 89 12 LEU A 34 ? ? -159.62 49.40 90 12 MET A 35 ? ? 57.68 161.88 91 12 CYS A 71 ? ? 54.98 72.40 92 12 ALA A 106 ? ? -65.59 28.55 93 12 SER A 108 ? ? 92.78 -155.66 94 12 PRO A 112 ? ? -48.68 -155.59 95 12 LYS A 120 ? ? -72.40 -164.13 96 13 LEU A 34 ? ? -161.87 44.13 97 13 MET A 35 ? ? 61.52 166.26 98 13 CYS A 71 ? ? 50.10 80.76 99 13 ALA A 106 ? ? -72.17 41.98 100 13 SER A 108 ? ? 31.64 -160.37 101 13 PRO A 112 ? ? -49.42 -160.58 102 13 LYS A 120 ? ? -71.31 -153.12 103 14 LEU A 34 ? ? -159.61 80.51 104 14 MET A 35 ? ? 52.56 152.79 105 14 ALA A 106 ? ? -69.16 38.89 106 14 SER A 108 ? ? 27.99 -149.72 107 14 PRO A 112 ? ? -45.55 -158.66 108 14 LYS A 120 ? ? -73.51 -163.74 109 15 PRO A 31 ? ? -59.15 8.24 110 15 PHE A 32 ? ? -149.71 -67.42 111 15 MET A 35 ? ? 72.77 144.69 112 15 ASP A 72 ? ? -43.72 97.91 113 15 ALA A 106 ? ? -69.59 36.02 114 15 SER A 108 ? ? 30.77 -157.21 115 15 PRO A 112 ? ? -49.58 -157.66 116 15 LYS A 120 ? ? -73.90 -161.10 117 16 LEU A 30 ? ? 63.10 62.73 118 16 LEU A 34 ? ? -164.69 113.99 119 16 MET A 35 ? ? 57.75 132.98 120 16 ASP A 68 ? ? -146.24 -2.74 121 16 CYS A 71 ? ? 54.28 70.90 122 16 ALA A 106 ? ? -66.84 39.21 123 16 SER A 108 ? ? 47.12 -151.76 124 16 PRO A 112 ? ? -45.79 -157.01 125 16 LYS A 120 ? ? -72.07 -156.89 126 17 LEU A 30 ? ? 56.10 101.82 127 17 PRO A 31 ? ? -53.08 -131.97 128 17 LEU A 34 ? ? -161.45 117.20 129 17 MET A 35 ? ? 57.07 128.96 130 17 CYS A 71 ? ? 60.63 61.27 131 17 ASP A 72 ? ? -41.30 104.86 132 17 ALA A 73 ? ? -124.28 -164.69 133 17 ALA A 106 ? ? -67.06 26.70 134 17 SER A 108 ? ? 97.26 -156.98 135 17 PRO A 112 ? ? -46.29 -155.78 136 17 LYS A 120 ? ? -79.61 -158.96 137 17 TYR A 131 ? ? -72.53 -136.13 138 17 LYS A 132 ? ? -92.86 -71.00 139 18 LEU A 34 ? ? -157.93 -29.55 140 18 MET A 35 ? ? 62.83 155.51 141 18 CYS A 71 ? ? 54.18 70.24 142 18 ALA A 106 ? ? -72.56 43.75 143 18 SER A 108 ? ? 29.43 -153.76 144 18 PRO A 112 ? ? -51.14 -155.98 145 18 LYS A 120 ? ? -72.76 -156.57 146 19 LEU A 34 ? ? -158.56 -18.24 147 19 MET A 35 ? ? 54.62 144.76 148 19 ASP A 68 ? ? -146.17 -0.47 149 19 ALA A 106 ? ? -69.42 28.83 150 19 SER A 108 ? ? 88.86 -158.97 151 19 PRO A 112 ? ? -49.72 -162.34 152 19 LYS A 120 ? ? -76.74 -164.16 153 19 TYR A 131 ? ? -80.04 37.05 154 20 LEU A 30 ? ? 32.01 60.03 155 20 MET A 35 ? ? 52.49 141.42 156 20 ASP A 68 ? ? -146.49 -4.12 157 20 ASP A 72 ? ? -3.28 87.79 158 20 ALA A 73 ? ? -113.63 -167.66 159 20 ALA A 106 ? ? -63.99 28.87 160 20 SER A 108 ? ? 91.40 -162.77 161 20 PRO A 112 ? ? -49.18 -158.75 162 20 CYS A 115 ? ? -168.60 92.42 163 20 LYS A 120 ? ? -77.25 -167.07 164 21 LEU A 34 ? ? -160.47 113.72 165 21 MET A 35 ? ? 58.96 125.89 166 21 CYS A 71 ? ? 54.47 74.91 167 21 ALA A 106 ? ? -64.89 28.60 168 21 SER A 108 ? ? 90.01 -159.07 169 21 PRO A 112 ? ? -49.99 -153.85 170 21 LYS A 120 ? ? -76.32 -161.80 171 21 TYR A 131 ? ? -79.39 -118.46 172 22 PRO A 31 ? ? -47.28 158.51 173 22 MET A 35 ? ? 61.78 134.86 174 22 CYS A 71 ? ? 54.73 73.03 175 22 ALA A 106 ? ? -66.73 39.20 176 22 SER A 108 ? ? 29.52 -155.23 177 22 PRO A 112 ? ? -46.65 -159.37 178 22 LYS A 120 ? ? -72.09 -169.80 179 23 LEU A 30 ? ? 50.07 90.46 180 23 MET A 35 ? ? 58.06 138.02 181 23 CYS A 71 ? ? 56.34 70.25 182 23 ALA A 106 ? ? -67.22 40.85 183 23 SER A 108 ? ? 32.75 -150.55 184 23 PRO A 112 ? ? -46.23 -159.63 185 23 LYS A 120 ? ? -74.00 -153.77 186 23 LYS A 132 ? ? -95.19 -144.40 187 24 LEU A 34 ? ? -161.02 77.66 188 24 MET A 35 ? ? 52.74 146.59 189 24 ASP A 68 ? ? -151.83 -5.89 190 24 CYS A 71 ? ? 56.92 70.00 191 24 ALA A 106 ? ? -71.76 43.50 192 24 SER A 108 ? ? 29.36 -154.87 193 24 PRO A 112 ? ? -50.10 -156.37 194 25 LEU A 30 ? ? 64.99 65.93 195 25 PRO A 31 ? ? -65.86 -95.87 196 25 LEU A 34 ? ? -161.33 63.45 197 25 MET A 35 ? ? 49.23 173.34 198 25 CYS A 71 ? ? 55.69 72.12 199 25 ASP A 72 ? ? -49.65 106.03 200 25 ALA A 73 ? ? -122.56 -166.78 201 25 ALA A 106 ? ? -70.08 37.48 202 25 SER A 108 ? ? 31.69 -153.26 203 25 PRO A 112 ? ? -49.96 -154.61 204 25 CYS A 115 ? ? -153.49 73.47 205 25 LYS A 120 ? ? -70.89 -160.74 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc RAM 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LRhapa RAM 'COMMON NAME' GMML 1.0 a-L-rhamnopyranose RAM 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Rhap RAM 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Rha # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 3 alpha-L-rhamnopyranose RAM #