data_2JYD # _entry.id 2JYD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2JYD pdb_00002jyd 10.2210/pdb2jyd/pdb RCSB RCSB100444 ? ? WWPDB D_1000100444 ? ? # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2JYD _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2007-12-12 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Gamsjaeger, R.' 1 ? 'Swanton, M.K.' 2 ? 'Kobus, F.J.' 3 ? 'Lehtomaki, E.' 4 ? 'Lowry, J.A.' 5 ? 'Kwan, A.H.' 6 ? 'Matthews, J.M.' 7 ? 'Mackay, J.P.' 8 ? # _citation.id primary _citation.title 'Structural and biophysical analysis of the DNA binding properties of myelin transcription factor 1.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 283 _citation.page_first 5158 _citation.page_last 5167 _citation.year 2008 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18073212 _citation.pdbx_database_id_DOI 10.1074/jbc.M703772200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gamsjaeger, R.' 1 ? primary 'Swanton, M.K.' 2 ? primary 'Kobus, F.J.' 3 ? primary 'Lehtomaki, E.' 4 ? primary 'Lowry, J.A.' 5 ? primary 'Kwan, A.H.' 6 ? primary 'Matthews, J.M.' 7 ? primary 'Mackay, J.P.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'F5 domain of Myelin transcription factor 1' 4649.262 1 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'MyT1, Neural zinc finger factor 2, NZF-2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSMAAHSADLKCPTPGCDGSGHITGNYASHRSLSGCPRAKKSGLRV _entity_poly.pdbx_seq_one_letter_code_can GSMAAHSADLKCPTPGCDGSGHITGNYASHRSLSGCPRAKKSGLRV _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 MET n 1 4 ALA n 1 5 ALA n 1 6 HIS n 1 7 SER n 1 8 ALA n 1 9 ASP n 1 10 LEU n 1 11 LYS n 1 12 CYS n 1 13 PRO n 1 14 THR n 1 15 PRO n 1 16 GLY n 1 17 CYS n 1 18 ASP n 1 19 GLY n 1 20 SER n 1 21 GLY n 1 22 HIS n 1 23 ILE n 1 24 THR n 1 25 GLY n 1 26 ASN n 1 27 TYR n 1 28 ALA n 1 29 SER n 1 30 HIS n 1 31 ARG n 1 32 SER n 1 33 LEU n 1 34 SER n 1 35 GLY n 1 36 CYS n 1 37 PRO n 1 38 ARG n 1 39 ALA n 1 40 LYS n 1 41 LYS n 1 42 SER n 1 43 GLY n 1 44 LEU n 1 45 ARG n 1 46 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type vector _entity_src_gen.pdbx_host_org_vector pGex _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MYT1_MOUSE _struct_ref.pdbx_db_accession Q8CFC2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MAAHSADLKCPTPGCDGSGHITGNYASHRSLSGCPRAKKSGLKV _struct_ref.pdbx_align_begin 837 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JYD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 46 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8CFC2 _struct_ref_seq.db_align_beg 837 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 880 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 46 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2JYD GLY A 1 ? UNP Q8CFC2 ? ? 'expression tag' 1 1 1 2JYD SER A 2 ? UNP Q8CFC2 ? ? 'expression tag' 2 2 1 2JYD ARG A 45 ? UNP Q8CFC2 LYS 879 'SEE REMARK 999' 45 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '3D 1H-15N NOESY' 1 2 1 '2D 1H-1H NOESY' 1 3 1 '2D 1H-1H TOCSY' 1 4 1 '3D HNHA' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 10 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature 278 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '1mM [U-13C; U-15N] F5, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker DRX' # _pdbx_nmr_refine.entry_id 2JYD _pdbx_nmr_refine.method 'torsion angle dynamics, simulated annealing, molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2JYD _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2JYD _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_software.authors 'Brunger, Adams, Clore, Gros, Nilges and Read' _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name CNS _pdbx_nmr_software.version ? _pdbx_nmr_software.ordinal 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2JYD _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2JYD _struct.title 'Structure of the fifth zinc finger of Myelin Transcription Factor 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JYD _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' _struct_keywords.text ;zinc-finger, Myt1, Alternative splicing, Developmental protein, Differentiation, DNA-binding, Metal-binding, Neurogenesis, Nucleus, Transcription, Transcription regulation, METAL BINDING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id SER _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 7 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LYS _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 11 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id SER _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 7 _struct_conf.end_auth_comp_id LYS _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 11 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 12 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 12 A ZN 47 1_555 ? ? ? ? ? ? ? 2.269 ? ? metalc2 metalc ? ? A CYS 17 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 17 A ZN 47 1_555 ? ? ? ? ? ? ? 2.292 ? ? metalc3 metalc ? ? A HIS 30 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 30 A ZN 47 1_555 ? ? ? ? ? ? ? 1.945 ? ? metalc4 metalc ? ? A CYS 36 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 36 A ZN 47 1_555 ? ? ? ? ? ? ? 2.285 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ZN _struct_site.pdbx_auth_seq_id 47 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE ZN A 47' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 12 ? CYS A 12 . ? 1_555 ? 2 AC1 4 CYS A 17 ? CYS A 17 . ? 1_555 ? 3 AC1 4 HIS A 30 ? HIS A 30 . ? 1_555 ? 4 AC1 4 CYS A 36 ? CYS A 36 . ? 1_555 ? # _atom_sites.entry_id 2JYD _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 MET 3 3 3 MET MET A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 HIS 6 6 6 HIS HIS A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 CYS 12 12 12 CYS CYS A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 CYS 17 17 17 CYS CYS A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 HIS 22 22 22 HIS HIS A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 HIS 30 30 30 HIS HIS A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 CYS 36 36 36 CYS CYS A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 VAL 46 46 46 VAL VAL A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ZN _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 47 _pdbx_nonpoly_scheme.auth_seq_num 47 _pdbx_nonpoly_scheme.pdb_mon_id ZN _pdbx_nonpoly_scheme.auth_mon_id ZN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 12 ? A CYS 12 ? 1_555 ZN ? B ZN . ? A ZN 47 ? 1_555 SG ? A CYS 17 ? A CYS 17 ? 1_555 110.0 ? 2 SG ? A CYS 12 ? A CYS 12 ? 1_555 ZN ? B ZN . ? A ZN 47 ? 1_555 NE2 ? A HIS 30 ? A HIS 30 ? 1_555 107.8 ? 3 SG ? A CYS 17 ? A CYS 17 ? 1_555 ZN ? B ZN . ? A ZN 47 ? 1_555 NE2 ? A HIS 30 ? A HIS 30 ? 1_555 110.1 ? 4 SG ? A CYS 12 ? A CYS 12 ? 1_555 ZN ? B ZN . ? A ZN 47 ? 1_555 SG ? A CYS 36 ? A CYS 36 ? 1_555 109.2 ? 5 SG ? A CYS 17 ? A CYS 17 ? 1_555 ZN ? B ZN . ? A ZN 47 ? 1_555 SG ? A CYS 36 ? A CYS 36 ? 1_555 110.8 ? 6 NE2 ? A HIS 30 ? A HIS 30 ? 1_555 ZN ? B ZN . ? A ZN 47 ? 1_555 SG ? A CYS 36 ? A CYS 36 ? 1_555 108.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-01-15 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_struct_assembly 3 3 'Structure model' pdbx_struct_oper_list 4 3 'Structure model' struct_ref_seq_dif 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_entry_details.sequence_details 'SEE REF. 1 IN UNP DATABASE, MYT1_MOUSE.' _pdbx_entry_details.entry_id 2JYD _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_nmr_exptl_sample.component F5 _pdbx_nmr_exptl_sample.concentration 1 _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling '[U-13C; U-15N]' _pdbx_nmr_exptl_sample.solution_id 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 6 HB1 A ALA 4 ? ? H A ALA 5 ? ? 1.35 2 10 HB3 A LYS 41 ? ? H A SER 42 ? ? 1.30 3 11 HZ1 A LYS 11 ? ? O A THR 14 ? ? 1.58 4 11 OD2 A ASP 18 ? ? HG A SER 20 ? ? 1.59 5 12 HG12 A ILE 23 ? ? HA A PRO 37 ? ? 1.34 6 17 HB3 A LYS 41 ? ? H A SER 42 ? ? 1.33 7 19 HZ1 A LYS 11 ? ? O A THR 14 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 4 ? ? -94.14 -144.69 2 1 SER A 7 ? ? -85.26 33.62 3 1 ALA A 8 ? ? 58.64 -159.51 4 1 ASP A 9 ? ? -92.78 37.56 5 1 ARG A 31 ? ? -143.53 22.39 6 1 ALA A 39 ? ? -55.75 101.40 7 1 SER A 42 ? ? 68.94 -65.24 8 2 ASP A 9 ? ? -84.96 46.89 9 2 LYS A 11 ? ? -143.63 -156.34 10 2 ARG A 38 ? ? -99.87 42.74 11 2 LYS A 41 ? ? -138.11 -64.24 12 2 ARG A 45 ? ? -154.47 79.15 13 3 LEU A 10 ? ? -100.27 -61.46 14 3 THR A 24 ? ? -67.75 -70.10 15 3 ARG A 31 ? ? -148.62 -27.68 16 3 LEU A 33 ? ? -77.68 46.26 17 3 ALA A 39 ? ? -69.75 88.75 18 3 SER A 42 ? ? -106.83 41.05 19 4 SER A 2 ? ? 52.65 74.28 20 4 ALA A 8 ? ? 68.08 113.01 21 4 LYS A 11 ? ? 68.98 141.10 22 4 TYR A 27 ? ? -129.09 -164.72 23 4 HIS A 30 ? ? -155.53 -159.79 24 4 ARG A 31 ? ? -154.68 -16.51 25 4 LYS A 40 ? ? -75.49 43.78 26 4 SER A 42 ? ? 70.84 -62.20 27 5 ALA A 4 ? ? -153.01 -142.13 28 5 HIS A 6 ? ? 59.56 -105.29 29 5 LYS A 11 ? ? 66.10 109.03 30 5 ASP A 18 ? ? -144.17 -36.62 31 5 HIS A 30 ? ? -136.23 -157.38 32 5 ARG A 31 ? ? -147.08 -29.90 33 5 LYS A 41 ? ? -147.99 -49.38 34 6 ALA A 4 ? ? 54.56 -133.65 35 6 SER A 7 ? ? -97.45 58.59 36 6 ASP A 9 ? ? -90.37 55.20 37 6 LEU A 33 ? ? -78.27 33.19 38 6 LYS A 40 ? ? -53.83 98.84 39 7 MET A 3 ? ? 69.01 -88.68 40 7 ALA A 4 ? ? 64.53 -86.79 41 7 ALA A 5 ? ? -117.09 78.16 42 7 ALA A 8 ? ? -113.68 -151.73 43 7 ASP A 9 ? ? -104.54 68.15 44 7 LYS A 11 ? ? -99.46 -154.20 45 7 ARG A 31 ? ? -155.95 12.81 46 7 SER A 34 ? ? -135.19 -55.03 47 7 LYS A 41 ? ? -119.18 -71.78 48 8 ASP A 9 ? ? -83.33 43.03 49 8 LYS A 11 ? ? 178.73 156.96 50 8 LYS A 40 ? ? 47.54 -133.46 51 8 LYS A 41 ? ? -125.86 -138.77 52 9 SER A 7 ? ? 67.14 -94.31 53 9 ALA A 8 ? ? 44.10 -106.09 54 9 ARG A 31 ? ? -159.46 15.33 55 9 LYS A 41 ? ? -111.77 -118.12 56 10 ALA A 5 ? ? -113.77 54.36 57 10 HIS A 6 ? ? -124.95 -160.84 58 10 SER A 7 ? ? 65.77 176.79 59 10 ASP A 9 ? ? -90.87 58.68 60 10 ARG A 38 ? ? -94.44 39.77 61 10 LYS A 41 ? ? -160.66 -117.92 62 11 ALA A 4 ? ? -177.75 0.05 63 11 SER A 7 ? ? -110.37 -164.61 64 11 LYS A 11 ? ? -116.00 -158.53 65 11 ARG A 31 ? ? -156.34 10.39 66 11 LEU A 33 ? ? -77.72 33.86 67 11 LYS A 40 ? ? 66.06 166.83 68 11 ARG A 45 ? ? -154.75 61.53 69 12 HIS A 6 ? ? -119.58 -168.47 70 12 SER A 7 ? ? -61.80 98.39 71 12 LYS A 11 ? ? 71.89 143.12 72 12 ARG A 31 ? ? -160.46 38.33 73 12 CYS A 36 ? ? -58.94 109.64 74 12 LYS A 41 ? ? -93.45 -85.30 75 13 ALA A 5 ? ? 55.42 -90.12 76 13 SER A 7 ? ? -92.71 31.95 77 13 ASP A 9 ? ? -98.71 45.50 78 13 LYS A 11 ? ? -126.13 -160.90 79 13 ARG A 31 ? ? -159.21 8.70 80 13 LYS A 41 ? ? -57.93 103.60 81 14 MET A 3 ? ? -92.43 -72.45 82 14 ALA A 4 ? ? -97.89 -72.38 83 14 ALA A 5 ? ? -135.74 -102.22 84 14 TYR A 27 ? ? -120.50 -168.61 85 14 ARG A 31 ? ? -153.41 10.42 86 14 CYS A 36 ? ? -57.53 109.62 87 14 LYS A 40 ? ? -60.00 102.20 88 14 LYS A 41 ? ? -102.78 -82.82 89 14 ARG A 45 ? ? -103.50 62.70 90 15 ALA A 4 ? ? -155.48 79.94 91 15 LYS A 11 ? ? 64.59 130.62 92 15 SER A 20 ? ? -107.72 77.42 93 15 ARG A 31 ? ? -146.75 19.24 94 15 SER A 34 ? ? -132.92 -41.38 95 15 ALA A 39 ? ? -61.51 99.28 96 15 LYS A 40 ? ? 58.72 -147.50 97 16 SER A 2 ? ? 53.81 77.35 98 16 ASP A 9 ? ? -158.61 40.99 99 16 LYS A 11 ? ? -135.62 -154.22 100 16 ARG A 31 ? ? -146.69 -10.23 101 16 LEU A 33 ? ? -76.58 23.03 102 16 LYS A 41 ? ? 49.91 -115.25 103 16 ARG A 45 ? ? -122.53 -83.01 104 17 SER A 20 ? ? -115.87 77.78 105 17 ARG A 31 ? ? -146.84 15.48 106 17 LYS A 40 ? ? 56.54 -99.47 107 17 LYS A 41 ? ? -169.39 -113.06 108 17 SER A 42 ? ? -93.62 53.28 109 18 ALA A 4 ? ? 58.28 -106.96 110 18 CYS A 12 ? ? -57.13 171.63 111 18 HIS A 30 ? ? -140.30 -157.23 112 18 ARG A 31 ? ? -155.71 -18.96 113 18 LEU A 33 ? ? -77.69 23.87 114 18 LYS A 41 ? ? -97.13 -89.17 115 18 SER A 42 ? ? -84.67 48.19 116 19 ALA A 4 ? ? -154.60 35.26 117 19 ASP A 9 ? ? -94.94 34.80 118 19 LYS A 11 ? ? -109.20 -151.37 119 19 ARG A 31 ? ? -154.14 7.64 120 19 LEU A 33 ? ? -77.56 41.56 121 19 ARG A 38 ? ? -108.74 40.14 122 19 LYS A 41 ? ? -113.55 -158.85 123 19 LEU A 44 ? ? -103.28 77.81 124 20 ASP A 9 ? ? -79.80 36.98 125 20 ARG A 31 ? ? -156.70 11.86 126 20 LEU A 33 ? ? -77.00 30.62 127 20 LYS A 41 ? ? 65.59 -81.38 128 20 SER A 42 ? ? -67.83 95.57 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #