HEADER OXIDOREDUCTASE 31-DEC-07 2JZA TITLE SOLUTION NMR STRUCTURE OF NITRITE REDUCTASE [NAD(P)H] SMALL SUBUNIT TITLE 2 FROM ERWINIA CAROTOVORA. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 TARGET EWR120 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRITE REDUCTASE [NAD(P)H] SMALL SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 EC: 1.7.1.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PECTOBACTERIUM ATROSEPTICUM SCRI1043; SOURCE 3 ORGANISM_TAXID: 218491; SOURCE 4 STRAIN: SCRI 1043; SOURCE 5 ATCC: BAA-672; SOURCE 6 GENE: NIRD, ECA4080; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21-23C KEYWDS ISP DOMAIN, RIESKE IRON-SULFUR PROTEIN, 3-LAYER BETA-SANDWICH, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, NESG, NIRD, OXIDOREDUCTASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.SATHYAMOORTHY,A.ELETSKY,D.WANG,K.STOKES,L.OWENS,R.XIAO,J.LIU, AUTHOR 2 M.C.BARAN,G.V.T.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE,T.SZYPERSKI, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 16-MAR-22 2JZA 1 REMARK SEQADV REVDAT 3 24-FEB-09 2JZA 1 VERSN REVDAT 2 18-MAR-08 2JZA 1 AUTHOR JRNL REVDAT 1 22-JAN-08 2JZA 0 JRNL AUTH B.SATHYAMOORTHY,A.ELETSKY,D.WANG,K.STOKES,L.OWENS,R.XIAO, JRNL AUTH 2 J.LIU,M.C.BARAN,G.V.T.SWAPNA,T.B.ACTON,B.ROST, JRNL AUTH 3 G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF NITRITE REDUCTASE [NAD(P)H] SMALL JRNL TITL 2 SUBUNIT FROM ERWINIA CAROTOVORA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOSTRUCTURE 2.0.0, CARA 1.8.4, CNS 1.2 REMARK 3 AUTHORS : HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE), KELLER AND WUTHRICH (CARA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IN EXPLICIT WATER BATH REMARK 4 REMARK 4 2JZA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000100477. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 138 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.24 MM [U-5% 13C; U-100% 15N] REMARK 210 EWR120 PROTEIN, 5 MM CALCIUM REMARK 210 CHLORIDE, 20 MM AMMONIUM ACETATE, REMARK 210 100 MM SODIUM CHLORIDE, 10 MM REMARK 210 DTT, 0.02 % SODIUM AZIDE, 95% REMARK 210 H2O/5% D2O; 0.7 MM [U-100% 13C; REMARK 210 U-100% 15N] EWR120 PROTEIN, 5 MM REMARK 210 CALCIUM CHLORIDE, 20 MM AMMONIUM REMARK 210 ACETATE, 100 MM SODIUM CHLORIDE, REMARK 210 10 MM DTT, 0.02 % SODIUM AZIDE, REMARK 210 95% H2O/5% D2O; 0.32 MM [U-100% REMARK 210 13C; U-100% 15N] EWR120 PROTEIN, REMARK 210 5 MM CALCIUM CHLORIDE, 20 MM REMARK 210 AMMONIUM ACETATE, 100 MM SODIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D 1H-15N, REMARK 210 13CALI,13CARO NOESY; 2D 1H-13C REMARK 210 HSQC ALI; 3D HCCH-COSY ALIPHATIC; REMARK 210 3D HCCH-TOCSY ALIPHATIC; 3D REMARK 210 HBHA(CO)NH; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-13C CT-HSQC REMARK 210 ALIPHATIC; 2D 1H-13C CT-HSQC REMARK 210 AROMATIC; 3D HCCH-COSY AROMATIC; REMARK 210 2D 1HARO-15NARO LR-HSQC; 2D 1H- REMARK 210 13C CT-HSQC 28MS; 2D 1H-13C CT- REMARK 210 HSQC 56MS REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.8.4, CSI 2.0, MOLMOL REMARK 210 2K.2, PROSA 6.0.2, TALOS REMARK 210 98.040.21.02, VNMRJ 2.1B, CYANA REMARK 210 2.1, AUTOASSIGN 1.15.1, TOPSPIN REMARK 210 1.4 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ PHE A 31 HD21 ASN A 44 1.20 REMARK 500 HG21 THR A 97 HG21 ILE A 106 1.27 REMARK 500 HG23 THR A 100 H ASN A 101 1.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -71.35 -115.82 REMARK 500 1 VAL A 7 -70.52 -87.42 REMARK 500 1 GLU A 24 -79.21 64.19 REMARK 500 1 SER A 52 47.69 -81.62 REMARK 500 1 GLN A 63 -65.09 -150.89 REMARK 500 1 LYS A 74 -23.01 72.73 REMARK 500 1 ASP A 81 -60.86 -103.16 REMARK 500 1 LEU A 85 -77.57 62.23 REMARK 500 1 GLU A 86 -55.80 -131.52 REMARK 500 1 TYR A 90 29.70 -153.33 REMARK 500 1 THR A 100 -75.98 -74.60 REMARK 500 1 SER A 118 74.72 -107.04 REMARK 500 1 HIS A 129 148.56 70.15 REMARK 500 2 VAL A 7 -77.99 -87.36 REMARK 500 2 GLU A 24 -85.20 65.81 REMARK 500 2 GLN A 25 18.81 -154.00 REMARK 500 2 ASP A 36 -159.90 -89.56 REMARK 500 2 GLN A 50 72.01 62.99 REMARK 500 2 ARG A 56 -11.67 70.47 REMARK 500 2 GLN A 63 -71.84 177.62 REMARK 500 2 LEU A 72 -75.63 -67.09 REMARK 500 2 ARG A 78 129.93 72.32 REMARK 500 2 ASP A 81 -69.35 -160.36 REMARK 500 2 LEU A 85 -66.45 -90.14 REMARK 500 2 TYR A 90 -71.72 -89.13 REMARK 500 2 SER A 91 99.48 60.14 REMARK 500 2 ASN A 101 -66.89 72.45 REMARK 500 2 ASN A 117 31.06 -147.81 REMARK 500 3 GLN A 3 71.53 64.36 REMARK 500 3 CYS A 8 -166.37 -176.68 REMARK 500 3 ARG A 32 55.07 -140.66 REMARK 500 3 ASN A 35 94.52 62.50 REMARK 500 3 ASP A 36 -127.71 -177.90 REMARK 500 3 GLN A 50 74.48 61.69 REMARK 500 3 HIS A 62 76.68 -107.15 REMARK 500 3 GLN A 63 -75.21 66.01 REMARK 500 3 ASP A 81 -62.22 -148.88 REMARK 500 3 TYR A 90 -76.35 -90.40 REMARK 500 3 SER A 91 102.20 66.27 REMARK 500 3 ASN A 101 -164.75 -161.13 REMARK 500 3 ASP A 110 141.91 -172.67 REMARK 500 3 SER A 111 -72.28 -121.19 REMARK 500 3 ASP A 112 112.73 73.43 REMARK 500 3 HIS A 127 78.67 -107.60 REMARK 500 4 SER A 2 -75.03 -75.02 REMARK 500 4 VAL A 7 -75.36 -95.92 REMARK 500 4 GLU A 24 -80.28 67.11 REMARK 500 4 GLN A 63 -148.11 -123.68 REMARK 500 4 ASP A 64 44.25 -81.98 REMARK 500 4 ASP A 81 -58.87 -178.20 REMARK 500 REMARK 500 THIS ENTRY HAS 290 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EWR120 RELATED DB: TARGETDB DBREF 2JZA A 1 122 UNP Q6CZS1 Q6CZS1_ERWCT 1 122 SEQADV 2JZA LEU A 123 UNP Q6CZS1 EXPRESSION TAG SEQADV 2JZA GLU A 124 UNP Q6CZS1 EXPRESSION TAG SEQADV 2JZA HIS A 125 UNP Q6CZS1 EXPRESSION TAG SEQADV 2JZA HIS A 126 UNP Q6CZS1 EXPRESSION TAG SEQADV 2JZA HIS A 127 UNP Q6CZS1 EXPRESSION TAG SEQADV 2JZA HIS A 128 UNP Q6CZS1 EXPRESSION TAG SEQADV 2JZA HIS A 129 UNP Q6CZS1 EXPRESSION TAG SEQADV 2JZA HIS A 130 UNP Q6CZS1 EXPRESSION TAG SEQRES 1 A 130 MET SER GLN TRP THR THR VAL CYS LYS LEU ASP ASP ILE SEQRES 2 A 130 LEU PRO GLY THR GLY VAL CYS ALA LEU VAL GLU GLN GLN SEQRES 3 A 130 GLN ILE ALA VAL PHE ARG PRO ARG ASN ASP GLU GLN VAL SEQRES 4 A 130 TYR ALA ILE SER ASN ILE ASP PRO PHE ALA GLN ALA SER SEQRES 5 A 130 VAL LEU SER ARG GLY ILE VAL ALA GLU HIS GLN ASP ASP SEQRES 6 A 130 LEU TRP VAL ALA SER PRO LEU LYS LYS GLN HIS PHE ARG SEQRES 7 A 130 LEU TYR ASP GLY PHE CYS LEU GLU ASP GLY ALA TYR SER SEQRES 8 A 130 VAL ALA ALA TYR ASP THR GLN VAL THR ASN GLY ASN VAL SEQRES 9 A 130 GLN ILE SER ILE ALA ASP SER ASP VAL ALA VAL ASP ASN SEQRES 10 A 130 SER GLN PRO LEU PRO LEU GLU HIS HIS HIS HIS HIS HIS SHEET 1 A 3 TRP A 4 LYS A 9 0 SHEET 2 A 3 ASN A 103 SER A 107 -1 O VAL A 104 N VAL A 7 SHEET 3 A 3 THR A 97 VAL A 99 -1 N GLN A 98 O GLN A 105 SHEET 1 B 3 CYS A 20 VAL A 23 0 SHEET 2 B 3 GLN A 26 PHE A 31 -1 O GLN A 26 N VAL A 23 SHEET 3 B 3 TYR A 40 ILE A 42 -1 O TYR A 40 N PHE A 31 SHEET 1 C 3 ILE A 58 GLU A 61 0 SHEET 2 C 3 LEU A 66 ALA A 69 -1 O TRP A 67 N ALA A 60 SHEET 3 C 3 HIS A 76 ARG A 78 -1 O PHE A 77 N VAL A 68 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1