data_2JZF # _entry.id 2JZF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2JZF pdb_00002jzf 10.2210/pdb2jzf/pdb RCSB RCSB100482 ? ? WWPDB D_1000100482 ? ? # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2008-02-05 _pdbx_database_PDB_obs_spr.pdb_id 2JZF _pdbx_database_PDB_obs_spr.replace_pdb_id 2JWJ _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.content_type 388820 TargetDB . unspecified 15469 BMRB 'NMR assignment of the domain 513-651 from the SARS-CoV nonstructural protein nsp3' unspecified 15618 BMRB 'NMR assignment of the domain 527-651 from the SARS-CoV nonstructural protein nsp3' unspecified 2RNK PDB 'NMR structure of the domain 513-651 of the SARS-CoV nonstructural protein nsp3, ensemble of twenty energy minimized structures' unspecified 2JZD PDB 'NMR structure of the domain 527-651 of the SARS-CoV nonstructural protein nsp3, ensemble of twenty energy minimized structures' unspecified 2JZE PDB 'NMR structure of the domain 527-651 of the SARS-CoV nonstructural protein nsp3, single conformer' unspecified # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2JZF _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-01-04 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chatterjee, A.' 1 'Johnson, M.A.' 2 'Serrano, P.' 3 'Pedrini, B.' 4 'Joseph, J.' 5 'Saikatendu, K.' 6 'Neuman, B.' 7 'Stevens, R.C.' 8 'Wilson, I.A.' 9 'Buchmeier, M.J.' 10 'Kuhn, P.' 11 'Wuthrich, K.' 12 'Joint Center for Structural Genomics (JCSG)' 13 # _citation.id primary _citation.title ;Nuclear magnetic resonance structure shows that the severe acute respiratory syndrome coronavirus-unique domain contains a macrodomain fold. ; _citation.journal_abbrev J.Virol. _citation.journal_volume 83 _citation.page_first 1823 _citation.page_last 1836 _citation.year 2009 _citation.journal_id_ASTM JOVIAM _citation.country US _citation.journal_id_ISSN 0022-538X _citation.journal_id_CSD 0825 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19052085 _citation.pdbx_database_id_DOI 10.1128/JVI.01781-08 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chatterjee, A.' 1 ? primary 'Johnson, M.A.' 2 ? primary 'Serrano, P.' 3 ? primary 'Pedrini, B.' 4 ? primary 'Joseph, J.S.' 5 ? primary 'Neuman, B.W.' 6 ? primary 'Saikatendu, K.' 7 ? primary 'Buchmeier, M.J.' 8 ? primary 'Kuhn, P.' 9 ? primary 'Wuthrich, K.' 10 ? # _cell.entry_id 2JZF _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JZF _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Replicase polyprotein 1ab' _entity.formula_weight 15859.375 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'Non-structural protein 3 (Domain 513-651): Residues 1331-1469' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;pp1ab, ORF1ab polyprotein [includes: Replicase polyprotein 1a, Non-structural proteins 1,2,3,4, 3C-like proteinase, Non-structural proteins 6,7,8,9,10, RNA-directed RNA polymerase, Helicase, Exoribonuclease, Uridylate-specific endoribonuclease, Putative 2'-O-methyl transferase] ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMVLPSEAPNAKEEILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEP VASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSS ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMVLPSEAPNAKEEILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEP VASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 388820 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 VAL n 1 6 LEU n 1 7 PRO n 1 8 SER n 1 9 GLU n 1 10 ALA n 1 11 PRO n 1 12 ASN n 1 13 ALA n 1 14 LYS n 1 15 GLU n 1 16 GLU n 1 17 ILE n 1 18 LEU n 1 19 GLY n 1 20 THR n 1 21 VAL n 1 22 SER n 1 23 TRP n 1 24 ASN n 1 25 LEU n 1 26 ARG n 1 27 GLU n 1 28 MET n 1 29 LEU n 1 30 ALA n 1 31 HIS n 1 32 ALA n 1 33 GLU n 1 34 GLU n 1 35 THR n 1 36 ARG n 1 37 LYS n 1 38 LEU n 1 39 MET n 1 40 PRO n 1 41 ILE n 1 42 CYS n 1 43 MET n 1 44 ASP n 1 45 VAL n 1 46 ARG n 1 47 ALA n 1 48 ILE n 1 49 MET n 1 50 ALA n 1 51 THR n 1 52 ILE n 1 53 GLN n 1 54 ARG n 1 55 LYS n 1 56 TYR n 1 57 LYS n 1 58 GLY n 1 59 ILE n 1 60 LYS n 1 61 ILE n 1 62 GLN n 1 63 GLU n 1 64 GLY n 1 65 ILE n 1 66 VAL n 1 67 ASP n 1 68 TYR n 1 69 GLY n 1 70 VAL n 1 71 ARG n 1 72 PHE n 1 73 PHE n 1 74 PHE n 1 75 TYR n 1 76 THR n 1 77 SER n 1 78 LYS n 1 79 GLU n 1 80 PRO n 1 81 VAL n 1 82 ALA n 1 83 SER n 1 84 ILE n 1 85 ILE n 1 86 THR n 1 87 LYS n 1 88 LEU n 1 89 ASN n 1 90 SER n 1 91 LEU n 1 92 ASN n 1 93 GLU n 1 94 PRO n 1 95 LEU n 1 96 VAL n 1 97 THR n 1 98 MET n 1 99 PRO n 1 100 ILE n 1 101 GLY n 1 102 TYR n 1 103 VAL n 1 104 THR n 1 105 HIS n 1 106 GLY n 1 107 PHE n 1 108 ASN n 1 109 LEU n 1 110 GLU n 1 111 GLU n 1 112 ALA n 1 113 ALA n 1 114 ARG n 1 115 CYS n 1 116 MET n 1 117 ARG n 1 118 SER n 1 119 LEU n 1 120 LYS n 1 121 ALA n 1 122 PRO n 1 123 ALA n 1 124 VAL n 1 125 VAL n 1 126 SER n 1 127 VAL n 1 128 SER n 1 129 SER n 1 130 PRO n 1 131 ASP n 1 132 ALA n 1 133 VAL n 1 134 THR n 1 135 THR n 1 136 TYR n 1 137 ASN n 1 138 GLY n 1 139 TYR n 1 140 LEU n 1 141 THR n 1 142 SER n 1 143 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Coronavirus _entity_src_gen.pdbx_gene_src_gene 'rep, 1a-1b' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'SARS coronavirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 227859 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code R1AB_CVHSA _struct_ref.pdbx_db_accession P59641 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VLPSEAPNAKEEILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASI ITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSS ; _struct_ref.pdbx_align_begin 1331 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JZF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 143 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P59641 _struct_ref_seq.db_align_beg 1331 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1469 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 513 _struct_ref_seq.pdbx_auth_seq_align_end 651 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2JZF GLY A 1 ? UNP P59641 ? ? 'expression tag' -4 1 1 2JZF SER A 2 ? UNP P59641 ? ? 'expression tag' -3 2 1 2JZF HIS A 3 ? UNP P59641 ? ? 'expression tag' -2 3 1 2JZF MET A 4 ? UNP P59641 ? ? 'expression tag' -1 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '3D 1H-15N NOESY' 1 2 1 '3D 1H-13C NOESY ALIPHATIC REGION' 1 3 1 '3D 1H-13C NOESY AROMATIC REGION' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.227 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents ;1.2 mM [U-99% 13C; U-98% 15N] nsp3(513-651), 25 mM sodium phosphate, 150 mM sodium chloride, 2 mM sodium azide, 10 % D2O, 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2JZF _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2JZF _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2JZF _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 1.2 1 'Luginbuhl, Guntert, Billeter and Wuthrich' refinement OPAL ? 2 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2JZF _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2JZF _struct.title 'NMR Conformer closest to the mean coordinates of the domain 513-651 of the SARS-CoV nonstructural protein nsp3' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JZF _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text ;SARS-COV, SARS-UNIQUE DOMAIN, NONSTRUCTURAL PROTEIN, NSP3, NSP3C, FUNCTIONAL AND STRUCTURAL PROTEOMICS OF SARS-COV- RELATED PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, VIRAL PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 25 ? ARG A 36 ? LEU A 533 ARG A 544 1 ? 12 HELX_P HELX_P2 2 VAL A 45 ? TYR A 56 ? VAL A 553 TYR A 564 1 ? 12 HELX_P HELX_P3 3 PRO A 80 ? ASN A 89 ? PRO A 588 ASN A 597 1 ? 10 HELX_P HELX_P4 4 ASN A 108 ? SER A 118 ? ASN A 616 SER A 626 1 ? 11 HELX_P HELX_P5 5 SER A 129 ? SER A 143 ? SER A 637 SER A 651 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel B 1 2 ? parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 20 ? VAL A 21 ? THR A 528 VAL A 529 A 2 ALA A 123 ? SER A 126 ? ALA A 631 SER A 634 A 3 LEU A 95 ? THR A 97 ? LEU A 603 THR A 605 B 1 LEU A 38 ? CYS A 42 ? LEU A 546 CYS A 550 B 2 ARG A 71 ? TYR A 75 ? ARG A 579 TYR A 583 B 3 GLY A 64 ? ASP A 67 ? GLY A 572 ASP A 575 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 21 ? N VAL A 529 O VAL A 125 ? O VAL A 633 A 2 3 O VAL A 124 ? O VAL A 632 N THR A 97 ? N THR A 605 B 1 2 N ILE A 41 ? N ILE A 549 O PHE A 73 ? O PHE A 581 B 2 3 O PHE A 72 ? O PHE A 580 N VAL A 66 ? N VAL A 574 # _atom_sites.entry_id 2JZF _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -4 -4 GLY GLY A . n A 1 2 SER 2 -3 -3 SER SER A . n A 1 3 HIS 3 -2 -2 HIS HIS A . n A 1 4 MET 4 -1 -1 MET MET A . n A 1 5 VAL 5 513 513 VAL VAL A . n A 1 6 LEU 6 514 514 LEU LEU A . n A 1 7 PRO 7 515 515 PRO PRO A . n A 1 8 SER 8 516 516 SER SER A . n A 1 9 GLU 9 517 517 GLU GLU A . n A 1 10 ALA 10 518 518 ALA ALA A . n A 1 11 PRO 11 519 519 PRO PRO A . n A 1 12 ASN 12 520 520 ASN ASN A . n A 1 13 ALA 13 521 521 ALA ALA A . n A 1 14 LYS 14 522 522 LYS LYS A . n A 1 15 GLU 15 523 523 GLU GLU A . n A 1 16 GLU 16 524 524 GLU GLU A . n A 1 17 ILE 17 525 525 ILE ILE A . n A 1 18 LEU 18 526 526 LEU LEU A . n A 1 19 GLY 19 527 527 GLY GLY A . n A 1 20 THR 20 528 528 THR THR A . n A 1 21 VAL 21 529 529 VAL VAL A . n A 1 22 SER 22 530 530 SER SER A . n A 1 23 TRP 23 531 531 TRP TRP A . n A 1 24 ASN 24 532 532 ASN ASN A . n A 1 25 LEU 25 533 533 LEU LEU A . n A 1 26 ARG 26 534 534 ARG ARG A . n A 1 27 GLU 27 535 535 GLU GLU A . n A 1 28 MET 28 536 536 MET MET A . n A 1 29 LEU 29 537 537 LEU LEU A . n A 1 30 ALA 30 538 538 ALA ALA A . n A 1 31 HIS 31 539 539 HIS HIS A . n A 1 32 ALA 32 540 540 ALA ALA A . n A 1 33 GLU 33 541 541 GLU GLU A . n A 1 34 GLU 34 542 542 GLU GLU A . n A 1 35 THR 35 543 543 THR THR A . n A 1 36 ARG 36 544 544 ARG ARG A . n A 1 37 LYS 37 545 545 LYS LYS A . n A 1 38 LEU 38 546 546 LEU LEU A . n A 1 39 MET 39 547 547 MET MET A . n A 1 40 PRO 40 548 548 PRO PRO A . n A 1 41 ILE 41 549 549 ILE ILE A . n A 1 42 CYS 42 550 550 CYS CYS A . n A 1 43 MET 43 551 551 MET MET A . n A 1 44 ASP 44 552 552 ASP ASP A . n A 1 45 VAL 45 553 553 VAL VAL A . n A 1 46 ARG 46 554 554 ARG ARG A . n A 1 47 ALA 47 555 555 ALA ALA A . n A 1 48 ILE 48 556 556 ILE ILE A . n A 1 49 MET 49 557 557 MET MET A . n A 1 50 ALA 50 558 558 ALA ALA A . n A 1 51 THR 51 559 559 THR THR A . n A 1 52 ILE 52 560 560 ILE ILE A . n A 1 53 GLN 53 561 561 GLN GLN A . n A 1 54 ARG 54 562 562 ARG ARG A . n A 1 55 LYS 55 563 563 LYS LYS A . n A 1 56 TYR 56 564 564 TYR TYR A . n A 1 57 LYS 57 565 565 LYS LYS A . n A 1 58 GLY 58 566 566 GLY GLY A . n A 1 59 ILE 59 567 567 ILE ILE A . n A 1 60 LYS 60 568 568 LYS LYS A . n A 1 61 ILE 61 569 569 ILE ILE A . n A 1 62 GLN 62 570 570 GLN GLN A . n A 1 63 GLU 63 571 571 GLU GLU A . n A 1 64 GLY 64 572 572 GLY GLY A . n A 1 65 ILE 65 573 573 ILE ILE A . n A 1 66 VAL 66 574 574 VAL VAL A . n A 1 67 ASP 67 575 575 ASP ASP A . n A 1 68 TYR 68 576 576 TYR TYR A . n A 1 69 GLY 69 577 577 GLY GLY A . n A 1 70 VAL 70 578 578 VAL VAL A . n A 1 71 ARG 71 579 579 ARG ARG A . n A 1 72 PHE 72 580 580 PHE PHE A . n A 1 73 PHE 73 581 581 PHE PHE A . n A 1 74 PHE 74 582 582 PHE PHE A . n A 1 75 TYR 75 583 583 TYR TYR A . n A 1 76 THR 76 584 584 THR THR A . n A 1 77 SER 77 585 585 SER SER A . n A 1 78 LYS 78 586 586 LYS LYS A . n A 1 79 GLU 79 587 587 GLU GLU A . n A 1 80 PRO 80 588 588 PRO PRO A . n A 1 81 VAL 81 589 589 VAL VAL A . n A 1 82 ALA 82 590 590 ALA ALA A . n A 1 83 SER 83 591 591 SER SER A . n A 1 84 ILE 84 592 592 ILE ILE A . n A 1 85 ILE 85 593 593 ILE ILE A . n A 1 86 THR 86 594 594 THR THR A . n A 1 87 LYS 87 595 595 LYS LYS A . n A 1 88 LEU 88 596 596 LEU LEU A . n A 1 89 ASN 89 597 597 ASN ASN A . n A 1 90 SER 90 598 598 SER SER A . n A 1 91 LEU 91 599 599 LEU LEU A . n A 1 92 ASN 92 600 600 ASN ASN A . n A 1 93 GLU 93 601 601 GLU GLU A . n A 1 94 PRO 94 602 602 PRO PRO A . n A 1 95 LEU 95 603 603 LEU LEU A . n A 1 96 VAL 96 604 604 VAL VAL A . n A 1 97 THR 97 605 605 THR THR A . n A 1 98 MET 98 606 606 MET MET A . n A 1 99 PRO 99 607 607 PRO PRO A . n A 1 100 ILE 100 608 608 ILE ILE A . n A 1 101 GLY 101 609 609 GLY GLY A . n A 1 102 TYR 102 610 610 TYR TYR A . n A 1 103 VAL 103 611 611 VAL VAL A . n A 1 104 THR 104 612 612 THR THR A . n A 1 105 HIS 105 613 613 HIS HIS A . n A 1 106 GLY 106 614 614 GLY GLY A . n A 1 107 PHE 107 615 615 PHE PHE A . n A 1 108 ASN 108 616 616 ASN ASN A . n A 1 109 LEU 109 617 617 LEU LEU A . n A 1 110 GLU 110 618 618 GLU GLU A . n A 1 111 GLU 111 619 619 GLU GLU A . n A 1 112 ALA 112 620 620 ALA ALA A . n A 1 113 ALA 113 621 621 ALA ALA A . n A 1 114 ARG 114 622 622 ARG ARG A . n A 1 115 CYS 115 623 623 CYS CYS A . n A 1 116 MET 116 624 624 MET MET A . n A 1 117 ARG 117 625 625 ARG ARG A . n A 1 118 SER 118 626 626 SER SER A . n A 1 119 LEU 119 627 627 LEU LEU A . n A 1 120 LYS 120 628 628 LYS LYS A . n A 1 121 ALA 121 629 629 ALA ALA A . n A 1 122 PRO 122 630 630 PRO PRO A . n A 1 123 ALA 123 631 631 ALA ALA A . n A 1 124 VAL 124 632 632 VAL VAL A . n A 1 125 VAL 125 633 633 VAL VAL A . n A 1 126 SER 126 634 634 SER SER A . n A 1 127 VAL 127 635 635 VAL VAL A . n A 1 128 SER 128 636 636 SER SER A . n A 1 129 SER 129 637 637 SER SER A . n A 1 130 PRO 130 638 638 PRO PRO A . n A 1 131 ASP 131 639 639 ASP ASP A . n A 1 132 ALA 132 640 640 ALA ALA A . n A 1 133 VAL 133 641 641 VAL VAL A . n A 1 134 THR 134 642 642 THR THR A . n A 1 135 THR 135 643 643 THR THR A . n A 1 136 TYR 136 644 644 TYR TYR A . n A 1 137 ASN 137 645 645 ASN ASN A . n A 1 138 GLY 138 646 646 GLY GLY A . n A 1 139 TYR 139 647 647 TYR TYR A . n A 1 140 LEU 140 648 648 LEU LEU A . n A 1 141 THR 141 649 649 THR THR A . n A 1 142 SER 142 650 650 SER SER A . n A 1 143 SER 143 651 651 SER SER A . n # _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-02-05 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_spectrometer 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_spectrometer.model' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'nsp3(513-651)' 1.2 mM '[U-99% 13C; U-98% 15N]' 1 'sodium phosphate' 25 mM ? 1 'sodium chloride' 150 mM ? 1 'sodium azide' 2 mM ? 1 D2O 10 % ? 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 520 ? ? -144.87 16.61 2 1 SER A 530 ? ? -119.57 56.16 3 1 ASN A 532 ? ? -138.90 -92.79 4 1 LEU A 533 ? ? -135.00 -51.68 5 1 ILE A 569 ? ? 51.17 142.55 6 1 ASN A 600 ? ? 48.49 29.66 7 1 PRO A 607 ? ? -73.66 43.94 8 1 ILE A 608 ? ? 34.02 -88.37 9 1 VAL A 611 ? ? -133.20 -48.22 10 1 LYS A 628 ? ? -94.90 33.60 11 1 SER A 636 ? ? -69.62 10.70 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id TYR _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 564 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.065 _pdbx_validate_planes.type 'SIDE CHAIN' #