HEADER SIGNALING PROTEIN 31-JAN-08 2K0B TITLE NMR STRUCTURE OF THE UBA DOMAIN OF P62 (SQSTM1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEQUESTOSOME-1; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: UBA DOMAIN (UNP RESIDUES 387-436); COMPND 5 SYNONYM: PHOSPHOTYROSINE-INDEPENDENT LIGAND FOR THE LCK COMPND 6 SH2 DOMAIN OF 62 KDA, UBIQUITIN-BINDING PROTEIN P62, EBI3- COMPND 7 ASSOCIATED PROTEIN OF 60 KDA, P60, EBIAP; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SQSTM1, ORCA, OSIL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS UBIQUITIN BINDING, HELICAL BUNDLE, THREE HELICES, KEYWDS 2 ALTERNATIVE SPLICING, APOPTOSIS, CYTOPLASM, DIFFERENTIATION, KEYWDS 3 DISEASE MUTATION, ENDOSOME, IMMUNE RESPONSE, METAL-BINDING, KEYWDS 4 NUCLEUS, PHOSPHOPROTEIN, POLYMORPHISM, ZINC, ZINC-FINGER, KEYWDS 5 SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR J.E.LONG,B.CIANI,T.R.A.GALLAGHER,J.R.CAVEY,P.W.SHEPPARD, AUTHOR 2 R.LAYFIELD,M.S.SEARLE REVDAT 3 24-FEB-09 2K0B 1 VERSN REVDAT 2 26-FEB-08 2K0B 1 JRNL REVDAT 1 19-FEB-08 2K0B 0 JRNL AUTH C.L.EVANS,J.E.LONG,T.R.GALLAGHER,J.D.HIRST, JRNL AUTH 2 M.S.SEARLE JRNL TITL CONFORMATION AND DYNAMICS OF THE THREE-HELIX JRNL TITL 2 BUNDLE UBA DOMAIN OF P62 FROM EXPERIMENT AND JRNL TITL 3 SIMULATION. JRNL REF PROTEINS V. 71 227 2007 JRNL REFN ISSN 0887-3585 JRNL PMID 17932931 JRNL DOI 10.1002/PROT.21692 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.14 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K0B COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-08. REMARK 100 THE RCSB ID CODE IS RCSB100514. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 15N] REMARK 210 SEQUESTOSOME-1, 50 MM REMARK 210 POTASSIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 90% H2O/10% REMARK 210 D2O; 1 MM [U-100% 13C; U-100% REMARK 210 15N] SEQUESTOSOME-1, 50 MM REMARK 210 POTASSIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 3D 1H-15N REMARK 210 NOESY, 2D 1H-13C HSQC, 3D REMARK 210 CBCA(CO)NH, 3D HNCACB, 3D REMARK 210 HNCO, 3D HN(CA)CO, 3D HCCH- REMARK 210 TOCSY, 3D 1H-13C NOESY, 3D 1H- REMARK 210 15N TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR_NIH 2.14, TALOS, REMARK 210 XWINNMR, CCPNMR 1.0.10 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO X 4 41.18 -75.08 REMARK 500 1 GLU X 5 12.59 -158.12 REMARK 500 1 ALA X 6 26.64 -173.19 REMARK 500 1 SER X 23 -148.71 -151.31 REMARK 500 1 GLU X 25 43.26 -82.90 REMARK 500 1 TYR X 38 76.62 63.18 REMARK 500 1 ILE X 47 45.44 -81.94 REMARK 500 1 GLN X 48 15.63 88.33 REMARK 500 1 SER X 50 20.96 -76.29 REMARK 500 1 LYS X 51 118.54 -167.91 REMARK 500 2 PRO X 4 33.87 -72.87 REMARK 500 2 ALA X 6 26.80 -173.58 REMARK 500 2 SER X 23 -134.86 -156.96 REMARK 500 2 GLU X 25 55.11 -97.61 REMARK 500 2 ARG X 31 -61.98 -94.99 REMARK 500 2 LEU X 32 -72.37 -47.16 REMARK 500 2 GLN X 48 -35.92 -159.80 REMARK 500 2 TYR X 49 34.96 -80.90 REMARK 500 3 ALA X 6 48.93 81.73 REMARK 500 3 GLN X 48 -41.56 -166.42 REMARK 500 3 TYR X 49 -158.48 -75.70 REMARK 500 3 SER X 50 21.83 -160.88 REMARK 500 4 PRO X 4 25.91 -75.25 REMARK 500 4 GLU X 25 65.17 -100.96 REMARK 500 4 GLN X 34 -71.27 -37.98 REMARK 500 4 LYS X 36 37.07 -88.01 REMARK 500 4 TYR X 38 73.90 68.57 REMARK 500 4 ILE X 47 44.33 -101.95 REMARK 500 4 SER X 50 47.65 -82.15 REMARK 500 4 LYS X 51 78.71 -165.38 REMARK 500 5 PRO X 4 37.50 -69.88 REMARK 500 5 GLU X 5 13.11 -146.93 REMARK 500 5 ALA X 6 41.62 -179.17 REMARK 500 5 ILE X 47 43.30 -88.05 REMARK 500 5 GLN X 48 38.13 85.88 REMARK 500 6 PRO X 4 40.77 -72.19 REMARK 500 6 GLU X 5 13.06 -151.73 REMARK 500 6 ALA X 6 21.38 -157.09 REMARK 500 6 GLU X 12 -60.74 -94.77 REMARK 500 6 LYS X 36 37.92 -78.30 REMARK 500 6 TYR X 38 77.86 59.78 REMARK 500 6 GLN X 48 -34.95 -166.89 REMARK 500 6 SER X 50 16.77 -153.06 REMARK 500 7 PRO X 4 37.77 -73.02 REMARK 500 7 ALA X 6 35.85 -177.09 REMARK 500 7 SER X 23 -149.28 -152.47 REMARK 500 7 GLU X 25 68.05 -115.69 REMARK 500 7 LYS X 36 37.14 -81.74 REMARK 500 7 TYR X 38 67.93 61.72 REMARK 500 7 GLN X 48 -48.84 -157.49 REMARK 500 8 PRO X 8 -25.41 -39.07 REMARK 500 8 ILE X 47 42.93 -100.72 REMARK 500 8 GLN X 48 -6.93 89.49 REMARK 500 8 TYR X 49 73.33 -112.26 REMARK 500 9 PRO X 4 34.23 -74.70 REMARK 500 9 GLU X 5 15.20 -146.39 REMARK 500 9 ALA X 6 51.05 -169.55 REMARK 500 9 GLU X 12 -64.19 -93.73 REMARK 500 9 SER X 23 -91.57 -158.59 REMARK 500 9 LEU X 32 -70.34 -52.07 REMARK 500 9 TYR X 38 78.01 60.05 REMARK 500 9 GLN X 48 -35.90 -164.04 REMARK 500 9 SER X 50 35.54 -155.28 REMARK 500 10 PRO X 4 42.64 -77.18 REMARK 500 10 GLU X 5 10.99 -142.56 REMARK 500 10 ALA X 6 44.00 -174.29 REMARK 500 10 SER X 23 -116.89 -151.51 REMARK 500 10 GLN X 48 -42.58 -161.22 REMARK 500 10 SER X 50 86.43 -169.29 REMARK 500 10 LYS X 51 62.57 83.82 REMARK 500 11 PRO X 4 35.65 -74.42 REMARK 500 11 GLU X 5 23.45 -162.32 REMARK 500 11 ALA X 6 28.63 179.11 REMARK 500 11 GLU X 12 -62.61 -93.65 REMARK 500 11 SER X 23 -143.25 -139.78 REMARK 500 11 TYR X 38 66.22 65.96 REMARK 500 11 ILE X 47 42.55 -84.09 REMARK 500 11 GLN X 48 7.55 84.67 REMARK 500 11 SER X 50 43.63 -81.13 REMARK 500 12 PRO X 4 38.12 -75.63 REMARK 500 12 GLU X 5 15.24 -153.48 REMARK 500 12 ALA X 6 24.72 -162.78 REMARK 500 12 LEU X 32 -77.54 -64.85 REMARK 500 12 LYS X 36 38.71 -87.81 REMARK 500 12 TYR X 38 71.35 58.74 REMARK 500 12 GLN X 48 -45.37 -173.94 REMARK 500 13 ALA X 6 46.55 -162.64 REMARK 500 13 GLU X 12 -64.95 -95.05 REMARK 500 13 SER X 23 -159.43 -140.04 REMARK 500 13 TYR X 38 77.76 66.94 REMARK 500 13 ILE X 47 44.66 -82.78 REMARK 500 13 GLN X 48 25.50 82.68 REMARK 500 14 PRO X 4 22.94 -71.64 REMARK 500 14 ALA X 6 37.95 -172.98 REMARK 500 14 LYS X 36 37.40 -95.57 REMARK 500 14 ASN X 37 61.01 61.98 REMARK 500 14 ILE X 47 42.78 -83.97 REMARK 500 15 GLU X 12 -66.49 -96.56 REMARK 500 15 LYS X 36 40.28 -93.38 REMARK 500 15 TYR X 38 73.39 64.37 REMARK 500 15 ILE X 47 43.30 -106.24 REMARK 500 15 GLN X 48 22.86 85.05 REMARK 500 16 PRO X 4 91.18 -51.92 REMARK 500 16 GLU X 5 -23.82 156.93 REMARK 500 16 ARG X 31 -60.24 -96.33 REMARK 500 16 LEU X 32 -72.63 -49.31 REMARK 500 16 TYR X 38 70.15 63.83 REMARK 500 16 GLN X 48 -39.09 -167.74 REMARK 500 16 TYR X 49 -159.22 -78.87 REMARK 500 16 SER X 50 41.76 -178.73 REMARK 500 17 PRO X 4 44.13 -78.29 REMARK 500 17 GLU X 5 26.32 -162.33 REMARK 500 17 ALA X 6 42.42 -174.32 REMARK 500 17 SER X 23 -128.15 -134.83 REMARK 500 17 ARG X 31 -66.07 -97.33 REMARK 500 17 LEU X 32 -73.47 -46.92 REMARK 500 17 TYR X 38 73.25 72.34 REMARK 500 17 GLN X 48 -44.75 -155.59 REMARK 500 17 TYR X 49 49.86 -84.01 REMARK 500 18 PRO X 4 21.66 -74.25 REMARK 500 18 ALA X 6 50.72 -166.81 REMARK 500 18 GLU X 25 78.98 -119.24 REMARK 500 18 LYS X 36 33.67 -95.33 REMARK 500 18 TYR X 38 69.90 66.94 REMARK 500 18 GLN X 48 -53.36 -157.31 REMARK 500 18 SER X 50 71.98 174.75 REMARK 500 19 PRO X 8 -13.37 -48.28 REMARK 500 19 SER X 23 -163.35 -161.38 REMARK 500 19 TYR X 38 71.46 71.27 REMARK 500 19 GLN X 48 -48.01 -165.79 REMARK 500 20 PRO X 4 29.85 -69.18 REMARK 500 20 ALA X 6 25.00 -150.96 REMARK 500 20 GLU X 25 58.25 -102.64 REMARK 500 20 ILE X 47 43.91 -79.93 REMARK 500 20 TYR X 49 55.34 -105.30 REMARK 500 20 LYS X 51 -129.22 -125.74 REMARK 500 21 PRO X 4 37.18 -75.42 REMARK 500 21 ALA X 6 37.50 -168.60 REMARK 500 21 GLU X 25 65.85 -116.35 REMARK 500 21 LYS X 36 37.55 -97.45 REMARK 500 21 ILE X 47 42.28 -96.75 REMARK 500 21 GLN X 48 30.82 80.94 REMARK 500 22 ALA X 6 50.43 80.01 REMARK 500 22 SER X 13 -61.03 -98.56 REMARK 500 22 SER X 23 -138.01 -154.65 REMARK 500 22 TYR X 38 69.39 64.69 REMARK 500 22 GLN X 48 -43.65 -163.28 REMARK 500 22 TYR X 49 34.58 -78.03 REMARK 500 22 SER X 50 36.47 -98.19 REMARK 500 23 PRO X 4 24.08 -71.70 REMARK 500 23 GLU X 5 18.03 -143.35 REMARK 500 23 ALA X 6 15.19 -170.17 REMARK 500 23 PRO X 8 -28.48 -38.78 REMARK 500 23 ARG X 31 -62.26 -96.36 REMARK 500 23 LYS X 36 39.30 -94.63 REMARK 500 23 ASN X 37 53.12 31.82 REMARK 500 23 GLN X 48 -26.68 -153.64 REMARK 500 23 TYR X 49 54.70 -101.33 REMARK 500 24 ALA X 6 36.37 -154.95 REMARK 500 24 SER X 23 -136.71 -140.90 REMARK 500 24 TYR X 38 67.89 64.04 REMARK 500 24 GLN X 48 -59.35 -161.19 REMARK 500 24 TYR X 49 -179.15 -69.96 REMARK 500 24 SER X 50 26.42 -153.33 REMARK 500 25 SER X 23 -135.28 -159.28 REMARK 500 25 GLU X 25 48.47 -87.37 REMARK 500 25 LYS X 36 39.38 -96.56 REMARK 500 25 TYR X 38 74.12 59.89 REMARK 500 25 GLN X 48 -58.32 -158.74 REMARK 500 25 SER X 50 49.89 -82.06 REMARK 500 26 PRO X 4 38.48 -70.92 REMARK 500 26 ALA X 6 66.20 173.25 REMARK 500 26 TYR X 38 68.25 60.80 REMARK 500 26 ILE X 47 43.67 -83.78 REMARK 500 26 GLN X 48 34.07 82.14 REMARK 500 26 TYR X 49 55.36 -146.16 REMARK 500 26 SER X 50 54.05 -91.84 REMARK 500 27 PRO X 4 24.00 -69.95 REMARK 500 27 GLU X 5 15.45 -143.58 REMARK 500 27 ALA X 6 31.32 -167.74 REMARK 500 27 LYS X 36 37.30 -90.98 REMARK 500 27 GLN X 48 -5.66 153.95 REMARK 500 27 LYS X 51 68.54 72.46 REMARK 500 28 PRO X 4 32.90 -82.14 REMARK 500 28 ALA X 6 31.91 -179.42 REMARK 500 28 GLU X 25 57.30 -107.50 REMARK 500 28 ILE X 47 42.64 -83.34 REMARK 500 28 LYS X 51 21.25 -140.86 REMARK 500 29 PRO X 4 30.65 -71.31 REMARK 500 29 ALA X 6 28.35 -165.99 REMARK 500 29 PRO X 8 -14.60 -47.19 REMARK 500 29 SER X 23 -123.51 -158.72 REMARK 500 29 LEU X 32 -71.99 -50.12 REMARK 500 29 GLN X 48 -32.07 -165.61 REMARK 500 29 TYR X 49 42.31 -77.88 REMARK 500 30 PRO X 4 24.39 -73.80 REMARK 500 30 GLU X 5 13.49 -141.05 REMARK 500 30 ALA X 6 21.75 -162.57 REMARK 500 30 GLU X 12 -62.29 -95.91 REMARK 500 30 ARG X 31 -65.47 -95.92 REMARK 500 30 ASN X 37 15.86 136.87 REMARK 500 30 TYR X 38 56.25 72.42 REMARK 500 30 ILE X 47 43.91 -102.63 REMARK 500 30 GLN X 48 33.45 82.00 REMARK 500 30 TYR X 49 58.16 -141.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15591 RELATED DB: BMRB REMARK 900 ASSIGNED NMR CHEMICAL SHIFTS DBREF 2K0B X 3 52 UNP Q13501 SQSTM_HUMAN 387 436 SEQADV 2K0B GLY X 1 UNP Q13501 EXPRESSION TAG SEQADV 2K0B SER X 2 UNP Q13501 EXPRESSION TAG SEQRES 1 X 52 GLY SER PRO PRO GLU ALA ASP PRO ARG LEU ILE GLU SER SEQRES 2 X 52 LEU SER GLN MET LEU SER MET GLY PHE SER ASP GLU GLY SEQRES 3 X 52 GLY TRP LEU THR ARG LEU LEU GLN THR LYS ASN TYR ASP SEQRES 4 X 52 ILE GLY ALA ALA LEU ASP THR ILE GLN TYR SER LYS HIS HELIX 1 1 ARG X 9 GLY X 21 1 13 HELIX 2 2 TRP X 28 LYS X 36 1 9 HELIX 3 3 ASP X 39 ILE X 47 1 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1