HEADER MEMBRANE PROTEIN 04-FEB-08 2K0L TITLE NMR STRUCTURE OF THE TRANSMEMBRANE DOMAIN OF THE OUTER MEMBRANE TITLE 2 PROTEIN A FROM KLEBSIELLA PNEUMONIAE IN DHPC MICELLES. COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TRANSMEMBRANE DOMAIN; COMPND 5 SYNONYM: OUTER MEMBRANE PROTEIN II; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: @ SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 STRAIN: RV 308; SOURCE 5 GENE: OMPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21C-KPOMPA; SOURCE 10 OTHER_DETAILS: PROTEIN EXPRESSED IN INCLUSION BODIES. KEYWDS OMPA, MEMBRANE PROTEIN, TROSY, SIDECHAIN, DHPC MICELLES EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.RENAULT,O.SAUREL,V.GERVAIS,F.LOHR,V.REAT,M.PIOTTO,A.MILON REVDAT 3 16-MAR-22 2K0L 1 REMARK SEQADV REVDAT 2 13-JAN-09 2K0L 1 JRNL REVDAT 1 23-DEC-08 2K0L 0 JRNL AUTH M.RENAULT,O.SAUREL,J.CZAPLICKI,P.DEMANGE,V.GERVAIS,F.LOHR, JRNL AUTH 2 V.REAT,M.PIOTTO,A.MILON JRNL TITL SOLUTION STATE NMR STRUCTURE AND DYNAMICS OF KPOMPA, A 210 JRNL TITL 2 RESIDUE TRANSMEMBRANE DOMAIN POSSESSING A HIGH POTENTIAL FOR JRNL TITL 3 IMMUNOLOGICAL APPLICATIONS. JRNL REF J.MOL.BIOL. V. 385 117 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 18952100 JRNL DOI 10.1016/J.JMB.2008.10.021 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K0L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000100524. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N; U-2H] KPOMPA REMARK 210 TRANSMEMBRANE DOMAIN, 90% H2O/10% REMARK 210 D2O; 1 MM [U-13C; U-15N; U-2H]/ REMARK 210 [L,V,I(DELTA1)-13CH3] KPOMPA REMARK 210 TRANSMEMBRANE DOMAIN, 90% H2O/10% REMARK 210 D2O; 1 MM [U-15N;10%-13C] REMARK 210 KPOMPA TRANSMEMBRANE DOMAIN, 90% REMARK 210 H2O/10% D2O; 1 MM [U-13C; U-15N; REMARK 210 U-2H]/[L,V,I(DELTA1)-13CH3] REMARK 210 KPOMPA TRANSMEMBRANE DOMAIN, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D [15N,1H]-TROSY; 3D [15N,1H] REMARK 210 -TROSY-HNCACB; 3D [15N,1H]-TROSY-HN(CO)CACB; 3D [15N,1H]-TROSY- REMARK 210 HNCO; 3D [15N,1H]-TROSY-HN(CA)CO; 3D (HNCA)CC-TOCSY-(CA)-[15N,1H] REMARK 210 -TROSY; 3D (H)C(CC)-TOCSY-(CA)-[15N,1H]-TROSY; 3D H(CCCO)-TOCSY; REMARK 210 2D [1H,13C]-CT-HSQC; 4D 15N,15N-SEPARATED HMQC-NOESY-TROSY; 3D REMARK 210 15N,13C-SEPARATED HMQC-NOESY-TROSY; 3D 13C,13C-SEPARATED HMQC- REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ; 700 MHZ; 600 REMARK 210 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW V5.2.2 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING, SIMULATED ANNEALING, REMARK 210 TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 211 REMARK 465 HIS A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 6 -73.45 -113.47 REMARK 500 1 ILE A 7 30.64 -147.05 REMARK 500 1 ASP A 16 41.08 -89.30 REMARK 500 1 TYR A 30 146.24 -176.70 REMARK 500 1 ASP A 32 -47.56 -137.31 REMARK 500 1 GLN A 41 -65.48 -101.72 REMARK 500 1 PRO A 46 -173.39 -53.51 REMARK 500 1 ASN A 49 58.57 -98.78 REMARK 500 1 PRO A 64 63.61 -68.26 REMARK 500 1 TYR A 65 -45.61 -154.36 REMARK 500 1 LEU A 75 157.86 61.86 REMARK 500 1 ALA A 79 98.46 -171.64 REMARK 500 1 TYR A 80 75.89 -153.08 REMARK 500 1 LYS A 81 100.46 -163.59 REMARK 500 1 THR A 105 -62.35 -154.90 REMARK 500 1 ASP A 106 45.64 177.89 REMARK 500 1 ASP A 107 -30.11 179.07 REMARK 500 1 ASP A 156 31.45 -143.83 REMARK 500 1 PRO A 199 93.78 -53.75 REMARK 500 1 PRO A 207 98.99 -52.45 REMARK 500 2 ALA A 6 33.69 -98.35 REMARK 500 2 PHE A 8 81.76 -159.14 REMARK 500 2 ASN A 17 -71.48 -108.07 REMARK 500 2 TYR A 36 -51.81 -129.61 REMARK 500 2 ASN A 43 98.09 -60.26 REMARK 500 2 THR A 47 -73.12 -144.84 REMARK 500 2 ARG A 48 29.88 -148.21 REMARK 500 2 VAL A 62 -49.41 -133.60 REMARK 500 2 PRO A 64 73.08 -67.02 REMARK 500 2 TYR A 65 -38.69 -177.05 REMARK 500 2 MET A 78 31.36 -99.12 REMARK 500 2 ALA A 79 56.75 -107.44 REMARK 500 2 SER A 83 -46.80 -154.85 REMARK 500 2 GLN A 92 138.98 -175.12 REMARK 500 2 THR A 105 39.20 -161.62 REMARK 500 2 ASP A 107 -38.19 -177.56 REMARK 500 2 SER A 129 44.21 -106.91 REMARK 500 2 VAL A 153 60.06 -116.07 REMARK 500 2 THR A 154 -168.56 45.85 REMARK 500 2 GLN A 164 108.16 -178.12 REMARK 500 2 TRP A 165 118.92 -162.88 REMARK 500 2 ILE A 169 30.72 -153.25 REMARK 500 2 ALA A 198 73.97 -151.83 REMARK 500 3 ARG A 2 -47.15 -151.57 REMARK 500 3 VAL A 9 -66.76 -131.42 REMARK 500 3 SER A 28 -69.47 -95.65 REMARK 500 3 PHE A 35 -69.35 -141.62 REMARK 500 3 ASN A 44 39.75 -144.94 REMARK 500 3 VAL A 62 29.22 -141.46 REMARK 500 3 TYR A 65 37.59 -148.63 REMARK 500 REMARK 500 THIS ENTRY HAS 477 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2K0L A 4 210 UNP P24017 OMPA_KLEPN 1 207 SEQADV 2K0L ALA A 1 UNP P24017 EXPRESSION TAG SEQADV 2K0L ARG A 2 UNP P24017 EXPRESSION TAG SEQADV 2K0L ILE A 3 UNP P24017 EXPRESSION TAG SEQADV 2K0L HIS A 211 UNP P24017 EXPRESSION TAG SEQADV 2K0L HIS A 212 UNP P24017 EXPRESSION TAG SEQADV 2K0L HIS A 213 UNP P24017 EXPRESSION TAG SEQADV 2K0L HIS A 214 UNP P24017 EXPRESSION TAG SEQADV 2K0L HIS A 215 UNP P24017 EXPRESSION TAG SEQADV 2K0L HIS A 216 UNP P24017 EXPRESSION TAG SEQRES 1 A 216 ALA ARG ILE MET LYS ALA ILE PHE VAL LEU ASN ALA ALA SEQRES 2 A 216 PRO LYS ASP ASN THR TRP TYR ALA GLY GLY LYS LEU GLY SEQRES 3 A 216 TRP SER GLN TYR HIS ASP THR GLY PHE TYR GLY ASN GLY SEQRES 4 A 216 PHE GLN ASN ASN ASN GLY PRO THR ARG ASN ASP GLN LEU SEQRES 5 A 216 GLY ALA GLY ALA PHE GLY GLY TYR GLN VAL ASN PRO TYR SEQRES 6 A 216 LEU GLY PHE GLU MET GLY TYR ASP TRP LEU GLY ARG MET SEQRES 7 A 216 ALA TYR LYS GLY SER VAL ASP ASN GLY ALA PHE LYS ALA SEQRES 8 A 216 GLN GLY VAL GLN LEU THR ALA LYS LEU GLY TYR PRO ILE SEQRES 9 A 216 THR ASP ASP LEU ASP ILE TYR THR ARG LEU GLY GLY MET SEQRES 10 A 216 VAL TRP ARG ALA ASP SER LYS GLY ASN TYR ALA SER THR SEQRES 11 A 216 GLY VAL SER ARG SER GLU HIS ASP THR GLY VAL SER PRO SEQRES 12 A 216 VAL PHE ALA GLY GLY VAL GLU TRP ALA VAL THR ARG ASP SEQRES 13 A 216 ILE ALA THR ARG LEU GLU TYR GLN TRP VAL ASN ASN ILE SEQRES 14 A 216 GLY ASP ALA GLY THR VAL GLY THR ARG PRO ASP ASN GLY SEQRES 15 A 216 MET LEU SER LEU GLY VAL SER TYR ARG PHE GLY GLN GLU SEQRES 16 A 216 ASP ALA ALA PRO VAL VAL ALA PRO ALA PRO ALA PRO ALA SEQRES 17 A 216 PRO GLU HIS HIS HIS HIS HIS HIS SHEET 1 A 9 TRP A 19 GLY A 26 0 SHEET 2 A 9 GLY A 53 ASN A 63 -1 O GLY A 55 N LYS A 24 SHEET 3 A 9 LEU A 66 TRP A 74 -1 O MET A 70 N GLY A 58 SHEET 4 A 9 GLY A 93 PRO A 103 -1 O THR A 97 N GLU A 69 SHEET 5 A 9 LEU A 108 ARG A 120 -1 O VAL A 118 N VAL A 94 SHEET 6 A 9 THR A 139 ALA A 152 -1 O GLU A 150 N ASP A 109 SHEET 7 A 9 ALA A 158 TYR A 163 -1 O THR A 159 N TRP A 151 SHEET 8 A 9 SER A 185 ARG A 191 -1 O SER A 189 N ALA A 158 SHEET 9 A 9 TRP A 19 GLY A 26 -1 N LEU A 25 O LEU A 186 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1