data_2K0T # _entry.id 2K0T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2K0T pdb_00002k0t 10.2210/pdb2k0t/pdb RCSB RCSB100532 ? ? WWPDB D_1000100532 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-02-03 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-08-31 4 'Structure model' 1 3 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2K0T _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-02-14 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.content_type 2K0U PDB . unspecified 2K0V PDB . unspecified 2K0W PDB . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bhattacharyya, D.' 1 'King, C.L.' 2 'Chaney, S.G.' 3 'Campbell, S.L.' 4 # _citation.id primary _citation.title 'Flanking Bases Influence the Nature of DNA Distortion by Platinum 1,2-Intrastrand (GG) Cross-Links.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 6 _citation.page_first e23582 _citation.page_last e23582 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21853154 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0023582 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bhattacharyya, D.' 1 ? primary 'Ramachandran, S.' 2 ? primary 'Sharma, S.' 3 ? primary 'Pathmasiri, W.' 4 ? primary 'King, C.L.' 5 ? primary 'Baskerville-Abraham, I.' 6 ? primary 'Boysen, G.' 7 ? primary 'Swenberg, J.A.' 8 ? primary 'Campbell, S.L.' 9 ? primary 'Dokholyan, N.V.' 10 ? primary 'Chaney, S.G.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*DCP*DCP*DTP*DCP*DTP*DGP*DGP*DTP*DCP*DTP*DCP*DC)-3') ; 3565.316 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*DGP*DGP*DAP*DGP*DAP*DCP*DCP*DAP*DGP*DAP*DGP*DG)-3') ; 3761.468 1 ? ? ? ? 3 non-polymer syn 'CYCLOHEXANE-1(R),2(R)-DIAMINE-PLATINUM(II)' 309.267 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DT)(DC)(DT)(DG)(DG)(DT)(DC)(DT)(DC)(DC)' CCTCTGGTCTCC A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DA)(DG)(DA)(DC)(DC)(DA)(DG)(DA)(DG)(DG)' GGAGACCAGAGG B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'CYCLOHEXANE-1(R),2(R)-DIAMINE-PLATINUM(II)' _pdbx_entity_nonpoly.comp_id 1PT # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DT n 1 4 DC n 1 5 DT n 1 6 DG n 1 7 DG n 1 8 DT n 1 9 DC n 1 10 DT n 1 11 DC n 1 12 DC n 2 1 DG n 2 2 DG n 2 3 DA n 2 4 DG n 2 5 DA n 2 6 DC n 2 7 DC n 2 8 DA n 2 9 DG n 2 10 DA n 2 11 DG n 2 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1PT non-polymer . 'CYCLOHEXANE-1(R),2(R)-DIAMINE-PLATINUM(II)' OXALIPLATIN 'C6 H14 N2 Pt 2' 309.267 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DT 10 10 10 DT DT A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DC 12 12 12 DC DC A . n B 2 1 DG 1 13 13 DG DG B . n B 2 2 DG 2 14 14 DG DG B . n B 2 3 DA 3 15 15 DA DA B . n B 2 4 DG 4 16 16 DG DG B . n B 2 5 DA 5 17 17 DA DA B . n B 2 6 DC 6 18 18 DC DC B . n B 2 7 DC 7 19 19 DC DC B . n B 2 8 DA 8 20 20 DA DA B . n B 2 9 DG 9 21 21 DG DG B . n B 2 10 DA 10 22 22 DA DA B . n B 2 11 DG 11 23 23 DG DG B . n B 2 12 DG 12 24 24 DG DG B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id 1PT _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 13 _pdbx_nonpoly_scheme.auth_seq_num 7 _pdbx_nonpoly_scheme.pdb_mon_id 1PT _pdbx_nonpoly_scheme.auth_mon_id DG _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'High resolution solution NMR structures (ensemble) of Oxaliplatin-DNA adduct in a DNA dodecamer duplex' _exptl.entry_id 2K0T _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2K0T _struct.title 'High Resolution Solution NMR Structures of Oxaliplatin-DNA Adduct' _struct.pdbx_model_details 'High resolution solution NMR structures (ensemble) of Oxaliplatin-DNA adduct in a DNA dodecamer duplex' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2K0T _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Oxaliplatin-DNA Adduct, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2K0T 2K0T 1 ? CCTCTGGTCTCC ? 2 PDB 2K0T 2K0T 2 ? GGAGACCAGAGG ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2K0T A 1 ? 12 ? 2K0T 1 ? 12 ? 1 12 2 2 2K0T B 1 ? 12 ? 2K0T 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 6 N7 ? ? ? 1_555 C 1PT . PT ? ? A DG 6 A 1PT 13 1_555 ? ? ? ? ? ? ? 2.015 ? ? metalc2 metalc ? ? A DG 7 N7 ? ? ? 1_555 C 1PT . PT ? ? A DG 7 A 1PT 13 1_555 ? ? ? ? ? ? ? 2.010 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 3 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 3 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 5 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 5 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 10 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 10 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 6 ? A DG 6 ? 1_555 PT ? C 1PT . ? A 1PT 13 ? 1_555 N1 ? C 1PT . ? A 1PT 13 ? 1_555 178.0 ? 2 N7 ? A DG 6 ? A DG 6 ? 1_555 PT ? C 1PT . ? A 1PT 13 ? 1_555 N2 ? C 1PT . ? A 1PT 13 ? 1_555 92.4 ? 3 N1 ? C 1PT . ? A 1PT 13 ? 1_555 PT ? C 1PT . ? A 1PT 13 ? 1_555 N2 ? C 1PT . ? A 1PT 13 ? 1_555 85.7 ? 4 N7 ? A DG 6 ? A DG 6 ? 1_555 PT ? C 1PT . ? A 1PT 13 ? 1_555 N7 ? A DG 7 ? A DG 7 ? 1_555 91.7 ? 5 N1 ? C 1PT . ? A 1PT 13 ? 1_555 PT ? C 1PT . ? A 1PT 13 ? 1_555 N7 ? A DG 7 ? A DG 7 ? 1_555 90.2 ? 6 N2 ? C 1PT . ? A 1PT 13 ? 1_555 PT ? C 1PT . ? A 1PT 13 ? 1_555 N7 ? A DG 7 ? A DG 7 ? 1_555 175.8 ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 1PT _struct_site.pdbx_auth_seq_id 13 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE 1PT A 13' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 DT A 5 ? DT A 5 . ? 1_555 ? 2 AC1 3 DG A 6 ? DG A 6 . ? 1_555 ? 3 AC1 3 DT A 8 ? DT A 8 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H22 A DG 6 ? ? O2 B DC 19 ? ? 1.36 2 1 H3 A DT 3 ? ? N1 B DA 22 ? ? 1.47 3 1 O2 A DC 4 ? ? H22 B DG 21 ? ? 1.49 4 1 H42 A DC 4 ? ? O6 B DG 21 ? ? 1.50 5 1 O4 A DT 3 ? ? H61 B DA 22 ? ? 1.50 6 1 O4 A DT 5 ? ? H61 B DA 20 ? ? 1.55 7 1 N3 A DC 4 ? ? H1 B DG 21 ? ? 1.55 8 1 O2 A DC 2 ? ? H22 B DG 23 ? ? 1.55 9 1 O2 A DC 9 ? ? H22 B DG 16 ? ? 1.57 10 1 H1 A DG 6 ? ? N3 B DC 19 ? ? 1.58 11 2 H22 A DG 7 ? ? O2 B DC 18 ? ? 1.52 12 2 O2 A DC 9 ? ? H22 B DG 16 ? ? 1.53 13 2 O2 A DC 12 ? ? H22 B DG 13 ? ? 1.55 14 2 H22 A DG 6 ? ? O2 B DC 19 ? ? 1.56 15 2 O2 A DC 1 ? ? H22 B DG 24 ? ? 1.56 16 2 O2 A DC 2 ? ? H22 B DG 23 ? ? 1.58 17 2 O2 A DC 4 ? ? H22 B DG 21 ? ? 1.59 18 3 H3 A DT 3 ? ? H61 B DA 22 ? ? 0.74 19 3 H22 A DG 6 ? ? O2 B DC 19 ? ? 1.04 20 3 O4 A DT 5 ? ? H61 B DA 20 ? ? 1.19 21 3 H1 A DG 6 ? ? N3 B DC 19 ? ? 1.30 22 3 H3 A DT 5 ? ? N1 B DA 20 ? ? 1.37 23 3 O2 A DC 4 ? ? H1 B DG 21 ? ? 1.39 24 3 O2 A DC 12 ? ? H22 B DG 13 ? ? 1.57 25 3 N2 A DG 6 ? ? O2 B DC 19 ? ? 1.82 26 3 O4 A DT 5 ? ? N6 B DA 20 ? ? 1.96 27 3 N1 A DG 6 ? ? N3 B DC 19 ? ? 2.12 28 3 O2 A DC 4 ? ? N1 B DG 21 ? ? 2.16 29 3 N3 A DT 5 ? ? N1 B DA 20 ? ? 2.16 30 4 H42 A DC 9 ? ? H62 B DA 15 ? ? 0.93 31 4 N4 A DC 9 ? ? H62 B DA 15 ? ? 1.20 32 4 C4 A DC 9 ? ? H61 B DA 15 ? ? 1.39 33 4 N4 A DC 9 ? ? N6 B DA 15 ? ? 1.52 34 4 H22 A DG 6 ? ? O2 B DC 19 ? ? 1.60 35 4 H42 A DC 9 ? ? N6 B DA 15 ? ? 1.60 36 4 C4 A DC 9 ? ? N6 B DA 15 ? ? 1.79 37 4 N4 A DC 4 ? ? N6 B DA 20 ? ? 2.04 38 4 N2 A DG 6 ? ? O2 B DC 19 ? ? 2.13 39 5 H22 A DG 6 ? ? O2 B DC 19 ? ? 1.19 40 5 O2 A DC 4 ? ? H22 B DG 21 ? ? 1.41 41 5 H22 A DG 7 ? ? O2 B DC 18 ? ? 1.45 42 5 O2 A DC 2 ? ? H22 B DG 23 ? ? 1.49 43 5 H1 A DG 6 ? ? N3 B DC 19 ? ? 1.59 44 5 N2 A DG 6 ? ? O2 B DC 19 ? ? 2.19 45 6 H3 A DT 3 ? ? H61 B DA 22 ? ? 1.26 46 6 N3 A DT 3 ? ? H61 B DA 22 ? ? 1.52 47 6 H41 A DC 9 ? ? N6 B DA 15 ? ? 1.52 48 6 H3 A DT 3 ? ? N6 B DA 22 ? ? 1.56 49 6 O2 A DC 2 ? ? H1 B DG 23 ? ? 1.57 50 6 H1 A DG 7 ? ? O2 B DC 18 ? ? 1.59 51 6 N4 A DC 9 ? ? N6 B DA 15 ? ? 1.79 52 6 O6 A DG 7 ? ? N3 B DC 18 ? ? 2.04 53 6 O2 A DT 3 ? ? N1 B DA 22 ? ? 2.05 54 6 O4 A DT 5 ? ? N6 B DA 20 ? ? 2.05 55 6 N4 A DC 9 ? ? C6 B DA 15 ? ? 2.08 56 6 N2 A DG 6 ? ? O2 B DC 19 ? ? 2.09 57 6 N3 A DT 3 ? ? O6 B DG 21 ? ? 2.18 58 7 H3 A DT 3 ? ? H61 B DA 22 ? ? 0.52 59 7 O6 A DG 6 ? ? H42 B DC 19 ? ? 1.38 60 7 O4 A DT 8 ? ? H61 B DA 17 ? ? 1.40 61 7 H22 A DG 6 ? ? O2 B DC 19 ? ? 1.40 62 7 H1 A DG 6 ? ? N3 B DC 19 ? ? 1.41 63 7 O4 A DT 5 ? ? H61 B DA 20 ? ? 1.46 64 7 H3 A DT 3 ? ? N6 B DA 22 ? ? 1.50 65 7 N3 A DT 3 ? ? H61 B DA 22 ? ? 1.50 66 7 O6 A DG 7 ? ? H42 B DC 18 ? ? 1.52 67 7 H42 A DC 12 ? ? O6 B DG 13 ? ? 1.58 68 7 O4 A DT 5 ? ? N6 B DA 20 ? ? 2.07 69 7 O6 A DG 6 ? ? N4 B DC 19 ? ? 2.18 70 8 N4 A DC 9 ? ? N6 B DA 15 ? ? 1.69 71 8 N2 A DG 6 ? ? O2 B DC 19 ? ? 2.13 72 8 O4 A DT 10 ? ? O6 B DG 14 ? ? 2.16 73 9 H22 A DG 6 ? ? O2 B DC 19 ? ? 1.48 74 10 H42 A DC 9 ? ? N6 B DA 15 ? ? 0.94 75 10 H42 A DC 9 ? ? H62 B DA 15 ? ? 1.02 76 10 H42 A DC 9 ? ? H61 B DA 15 ? ? 1.09 77 10 N4 A DC 9 ? ? H61 B DA 15 ? ? 1.10 78 10 N3 A DT 5 ? ? H42 B DC 19 ? ? 1.45 79 10 C4 A DC 9 ? ? H61 B DA 15 ? ? 1.52 80 10 N4 A DC 9 ? ? N6 B DA 15 ? ? 1.69 81 10 O4 A DT 5 ? ? N4 B DC 19 ? ? 1.94 82 10 C4 A DT 5 ? ? N4 B DC 19 ? ? 2.17 83 11 O4 A DT 5 ? ? H61 B DA 20 ? ? 1.28 84 12 H42 A DC 12 ? ? O6 B DG 13 ? ? 0.83 85 12 N3 A DC 12 ? ? H1 B DG 13 ? ? 1.40 86 12 H42 A DC 11 ? ? O6 B DG 14 ? ? 1.41 87 12 N4 A DC 12 ? ? O6 B DG 13 ? ? 1.44 88 12 N3 A DC 12 ? ? N1 B DG 13 ? ? 2.14 89 12 O4 A DT 5 ? ? N6 B DA 20 ? ? 2.18 90 12 C4 A DC 12 ? ? O6 B DG 13 ? ? 2.19 91 13 H3 A DT 3 ? ? H61 B DA 22 ? ? 0.45 92 13 H42 A DC 11 ? ? H1 B DG 14 ? ? 1.04 93 13 O4 A DT 5 ? ? H61 B DA 20 ? ? 1.14 94 13 H42 A DC 9 ? ? H1 B DG 16 ? ? 1.15 95 13 O6 A DG 6 ? ? H42 B DC 19 ? ? 1.21 96 13 N3 A DT 3 ? ? H61 B DA 22 ? ? 1.33 97 13 H3 A DT 3 ? ? N6 B DA 22 ? ? 1.38 98 13 O4 A DT 8 ? ? H61 B DA 17 ? ? 1.39 99 13 H3 A DT 5 ? ? N1 B DA 20 ? ? 1.43 100 13 H1 A DG 6 ? ? N3 B DC 19 ? ? 1.49 101 13 C4 A DT 5 ? ? H61 B DA 20 ? ? 1.52 102 13 O6 A DG 7 ? ? H42 B DC 18 ? ? 1.55 103 13 O4 A DT 5 ? ? N6 B DA 20 ? ? 1.68 104 13 O6 A DG 6 ? ? N4 B DC 19 ? ? 2.08 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 13 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2K0T _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_ensemble_rms.atom_type ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev 0.703 _pdbx_nmr_ensemble_rms.bond_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.chain_range_begin ? _pdbx_nmr_ensemble_rms.chain_range_end ? _pdbx_nmr_ensemble_rms.coord_average_rmsd_method ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev 0.0021 _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev_error ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev 1.854 _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev_error ? _pdbx_nmr_ensemble_rms.distance_rms_dev ? _pdbx_nmr_ensemble_rms.distance_rms_dev_error ? _pdbx_nmr_ensemble_rms.entry_id 2K0T _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev 0.317 _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev_error ? _pdbx_nmr_ensemble_rms.residue_range_begin ? _pdbx_nmr_ensemble_rms.residue_range_end ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2K0T _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.contents '1 mM OXALIPLATIN-DNA ADDUCT, 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_exptl_sample.component ;DNA (5'-D(*DGP*DGP*DAP*DGP*DAP*DCP*DCP*DAP*DGP*DAP*DGP*DG)-3') ; _pdbx_nmr_exptl_sample.concentration 1 _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength '50 mM NaCl' _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 2 1 1 '2D DQF-COSY' 3 1 1 '2D 1H-13C HSQC' # _pdbx_nmr_refine.entry_id 2K0T _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'energy based refinement with NOE distance constraints' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_software.authors 'Brunger A. T. et.al.' _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name CNS _pdbx_nmr_software.version ? _pdbx_nmr_software.ordinal 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1PT PT PT N N 1 1PT N1 N N N 2 1PT N2 N N N 3 1PT C1 C N R 4 1PT C2 C N R 5 1PT C3 C N N 6 1PT C4 C N N 7 1PT C5 C N N 8 1PT C6 C N N 9 1PT H11 H N N 10 1PT H12 H N N 11 1PT H21 H N N 12 1PT H22 H N N 13 1PT H1 H N N 14 1PT H2 H N N 15 1PT H31 H N N 16 1PT H32 H N N 17 1PT H41 H N N 18 1PT H42 H N N 19 1PT H51 H N N 20 1PT H52 H N N 21 1PT H61 H N N 22 1PT H62 H N N 23 DA OP3 O N N 24 DA P P N N 25 DA OP1 O N N 26 DA OP2 O N N 27 DA "O5'" O N N 28 DA "C5'" C N N 29 DA "C4'" C N R 30 DA "O4'" O N N 31 DA "C3'" C N S 32 DA "O3'" O N N 33 DA "C2'" C N N 34 DA "C1'" C N R 35 DA N9 N Y N 36 DA C8 C Y N 37 DA N7 N Y N 38 DA C5 C Y N 39 DA C6 C Y N 40 DA N6 N N N 41 DA N1 N Y N 42 DA C2 C Y N 43 DA N3 N Y N 44 DA C4 C Y N 45 DA HOP3 H N N 46 DA HOP2 H N N 47 DA "H5'" H N N 48 DA "H5''" H N N 49 DA "H4'" H N N 50 DA "H3'" H N N 51 DA "HO3'" H N N 52 DA "H2'" H N N 53 DA "H2''" H N N 54 DA "H1'" H N N 55 DA H8 H N N 56 DA H61 H N N 57 DA H62 H N N 58 DA H2 H N N 59 DC OP3 O N N 60 DC P P N N 61 DC OP1 O N N 62 DC OP2 O N N 63 DC "O5'" O N N 64 DC "C5'" C N N 65 DC "C4'" C N R 66 DC "O4'" O N N 67 DC "C3'" C N S 68 DC "O3'" O N N 69 DC "C2'" C N N 70 DC "C1'" C N R 71 DC N1 N N N 72 DC C2 C N N 73 DC O2 O N N 74 DC N3 N N N 75 DC C4 C N N 76 DC N4 N N N 77 DC C5 C N N 78 DC C6 C N N 79 DC HOP3 H N N 80 DC HOP2 H N N 81 DC "H5'" H N N 82 DC "H5''" H N N 83 DC "H4'" H N N 84 DC "H3'" H N N 85 DC "HO3'" H N N 86 DC "H2'" H N N 87 DC "H2''" H N N 88 DC "H1'" H N N 89 DC H41 H N N 90 DC H42 H N N 91 DC H5 H N N 92 DC H6 H N N 93 DG OP3 O N N 94 DG P P N N 95 DG OP1 O N N 96 DG OP2 O N N 97 DG "O5'" O N N 98 DG "C5'" C N N 99 DG "C4'" C N R 100 DG "O4'" O N N 101 DG "C3'" C N S 102 DG "O3'" O N N 103 DG "C2'" C N N 104 DG "C1'" C N R 105 DG N9 N Y N 106 DG C8 C Y N 107 DG N7 N Y N 108 DG C5 C Y N 109 DG C6 C N N 110 DG O6 O N N 111 DG N1 N N N 112 DG C2 C N N 113 DG N2 N N N 114 DG N3 N N N 115 DG C4 C Y N 116 DG HOP3 H N N 117 DG HOP2 H N N 118 DG "H5'" H N N 119 DG "H5''" H N N 120 DG "H4'" H N N 121 DG "H3'" H N N 122 DG "HO3'" H N N 123 DG "H2'" H N N 124 DG "H2''" H N N 125 DG "H1'" H N N 126 DG H8 H N N 127 DG H1 H N N 128 DG H21 H N N 129 DG H22 H N N 130 DT OP3 O N N 131 DT P P N N 132 DT OP1 O N N 133 DT OP2 O N N 134 DT "O5'" O N N 135 DT "C5'" C N N 136 DT "C4'" C N R 137 DT "O4'" O N N 138 DT "C3'" C N S 139 DT "O3'" O N N 140 DT "C2'" C N N 141 DT "C1'" C N R 142 DT N1 N N N 143 DT C2 C N N 144 DT O2 O N N 145 DT N3 N N N 146 DT C4 C N N 147 DT O4 O N N 148 DT C5 C N N 149 DT C7 C N N 150 DT C6 C N N 151 DT HOP3 H N N 152 DT HOP2 H N N 153 DT "H5'" H N N 154 DT "H5''" H N N 155 DT "H4'" H N N 156 DT "H3'" H N N 157 DT "HO3'" H N N 158 DT "H2'" H N N 159 DT "H2''" H N N 160 DT "H1'" H N N 161 DT H3 H N N 162 DT H71 H N N 163 DT H72 H N N 164 DT H73 H N N 165 DT H6 H N N 166 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1PT PT N1 sing N N 1 1PT PT N2 sing N N 2 1PT N1 C1 sing N N 3 1PT N1 H11 sing N N 4 1PT N1 H12 sing N N 5 1PT N2 C2 sing N N 6 1PT N2 H21 sing N N 7 1PT N2 H22 sing N N 8 1PT C1 C2 sing N N 9 1PT C1 C6 sing N N 10 1PT C1 H1 sing N N 11 1PT C2 C3 sing N N 12 1PT C2 H2 sing N N 13 1PT C3 C4 sing N N 14 1PT C3 H31 sing N N 15 1PT C3 H32 sing N N 16 1PT C4 C5 sing N N 17 1PT C4 H41 sing N N 18 1PT C4 H42 sing N N 19 1PT C5 C6 sing N N 20 1PT C5 H51 sing N N 21 1PT C5 H52 sing N N 22 1PT C6 H61 sing N N 23 1PT C6 H62 sing N N 24 DA OP3 P sing N N 25 DA OP3 HOP3 sing N N 26 DA P OP1 doub N N 27 DA P OP2 sing N N 28 DA P "O5'" sing N N 29 DA OP2 HOP2 sing N N 30 DA "O5'" "C5'" sing N N 31 DA "C5'" "C4'" sing N N 32 DA "C5'" "H5'" sing N N 33 DA "C5'" "H5''" sing N N 34 DA "C4'" "O4'" sing N N 35 DA "C4'" "C3'" sing N N 36 DA "C4'" "H4'" sing N N 37 DA "O4'" "C1'" sing N N 38 DA "C3'" "O3'" sing N N 39 DA "C3'" "C2'" sing N N 40 DA "C3'" "H3'" sing N N 41 DA "O3'" "HO3'" sing N N 42 DA "C2'" "C1'" sing N N 43 DA "C2'" "H2'" sing N N 44 DA "C2'" "H2''" sing N N 45 DA "C1'" N9 sing N N 46 DA "C1'" "H1'" sing N N 47 DA N9 C8 sing Y N 48 DA N9 C4 sing Y N 49 DA C8 N7 doub Y N 50 DA C8 H8 sing N N 51 DA N7 C5 sing Y N 52 DA C5 C6 sing Y N 53 DA C5 C4 doub Y N 54 DA C6 N6 sing N N 55 DA C6 N1 doub Y N 56 DA N6 H61 sing N N 57 DA N6 H62 sing N N 58 DA N1 C2 sing Y N 59 DA C2 N3 doub Y N 60 DA C2 H2 sing N N 61 DA N3 C4 sing Y N 62 DC OP3 P sing N N 63 DC OP3 HOP3 sing N N 64 DC P OP1 doub N N 65 DC P OP2 sing N N 66 DC P "O5'" sing N N 67 DC OP2 HOP2 sing N N 68 DC "O5'" "C5'" sing N N 69 DC "C5'" "C4'" sing N N 70 DC "C5'" "H5'" sing N N 71 DC "C5'" "H5''" sing N N 72 DC "C4'" "O4'" sing N N 73 DC "C4'" "C3'" sing N N 74 DC "C4'" "H4'" sing N N 75 DC "O4'" "C1'" sing N N 76 DC "C3'" "O3'" sing N N 77 DC "C3'" "C2'" sing N N 78 DC "C3'" "H3'" sing N N 79 DC "O3'" "HO3'" sing N N 80 DC "C2'" "C1'" sing N N 81 DC "C2'" "H2'" sing N N 82 DC "C2'" "H2''" sing N N 83 DC "C1'" N1 sing N N 84 DC "C1'" "H1'" sing N N 85 DC N1 C2 sing N N 86 DC N1 C6 sing N N 87 DC C2 O2 doub N N 88 DC C2 N3 sing N N 89 DC N3 C4 doub N N 90 DC C4 N4 sing N N 91 DC C4 C5 sing N N 92 DC N4 H41 sing N N 93 DC N4 H42 sing N N 94 DC C5 C6 doub N N 95 DC C5 H5 sing N N 96 DC C6 H6 sing N N 97 DG OP3 P sing N N 98 DG OP3 HOP3 sing N N 99 DG P OP1 doub N N 100 DG P OP2 sing N N 101 DG P "O5'" sing N N 102 DG OP2 HOP2 sing N N 103 DG "O5'" "C5'" sing N N 104 DG "C5'" "C4'" sing N N 105 DG "C5'" "H5'" sing N N 106 DG "C5'" "H5''" sing N N 107 DG "C4'" "O4'" sing N N 108 DG "C4'" "C3'" sing N N 109 DG "C4'" "H4'" sing N N 110 DG "O4'" "C1'" sing N N 111 DG "C3'" "O3'" sing N N 112 DG "C3'" "C2'" sing N N 113 DG "C3'" "H3'" sing N N 114 DG "O3'" "HO3'" sing N N 115 DG "C2'" "C1'" sing N N 116 DG "C2'" "H2'" sing N N 117 DG "C2'" "H2''" sing N N 118 DG "C1'" N9 sing N N 119 DG "C1'" "H1'" sing N N 120 DG N9 C8 sing Y N 121 DG N9 C4 sing Y N 122 DG C8 N7 doub Y N 123 DG C8 H8 sing N N 124 DG N7 C5 sing Y N 125 DG C5 C6 sing N N 126 DG C5 C4 doub Y N 127 DG C6 O6 doub N N 128 DG C6 N1 sing N N 129 DG N1 C2 sing N N 130 DG N1 H1 sing N N 131 DG C2 N2 sing N N 132 DG C2 N3 doub N N 133 DG N2 H21 sing N N 134 DG N2 H22 sing N N 135 DG N3 C4 sing N N 136 DT OP3 P sing N N 137 DT OP3 HOP3 sing N N 138 DT P OP1 doub N N 139 DT P OP2 sing N N 140 DT P "O5'" sing N N 141 DT OP2 HOP2 sing N N 142 DT "O5'" "C5'" sing N N 143 DT "C5'" "C4'" sing N N 144 DT "C5'" "H5'" sing N N 145 DT "C5'" "H5''" sing N N 146 DT "C4'" "O4'" sing N N 147 DT "C4'" "C3'" sing N N 148 DT "C4'" "H4'" sing N N 149 DT "O4'" "C1'" sing N N 150 DT "C3'" "O3'" sing N N 151 DT "C3'" "C2'" sing N N 152 DT "C3'" "H3'" sing N N 153 DT "O3'" "HO3'" sing N N 154 DT "C2'" "C1'" sing N N 155 DT "C2'" "H2'" sing N N 156 DT "C2'" "H2''" sing N N 157 DT "C1'" N1 sing N N 158 DT "C1'" "H1'" sing N N 159 DT N1 C2 sing N N 160 DT N1 C6 sing N N 161 DT C2 O2 doub N N 162 DT C2 N3 sing N N 163 DT N3 C4 sing N N 164 DT N3 H3 sing N N 165 DT C4 O4 doub N N 166 DT C4 C5 sing N N 167 DT C5 C7 sing N N 168 DT C5 C6 doub N N 169 DT C7 H71 sing N N 170 DT C7 H72 sing N N 171 DT C7 H73 sing N N 172 DT C6 H6 sing N N 173 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2K0T 'double helix' 2K0T 'a-form double helix' 2K0T 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 1.383 -0.259 0.539 -1.251 -0.794 3.241 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DC 2 1_555 B DG 11 1_555 1.049 -0.648 0.371 -3.390 -0.418 3.428 2 A_DC2:DG23_B A 2 ? B 23 ? 19 1 1 A DT 3 1_555 B DA 10 1_555 0.352 -0.715 0.548 0.327 -1.263 -1.196 3 A_DT3:DA22_B A 3 ? B 22 ? 20 1 1 A DC 4 1_555 B DG 9 1_555 0.212 -0.678 0.726 -1.618 0.489 -1.835 4 A_DC4:DG21_B A 4 ? B 21 ? 19 1 1 A DT 5 1_555 B DA 8 1_555 -0.092 -0.329 0.713 -2.631 0.961 -9.619 5 A_DT5:DA20_B A 5 ? B 20 ? 20 1 1 A DG 6 1_555 B DC 7 1_555 -0.050 -0.524 0.818 7.463 -3.338 1.487 6 A_DG6:DC19_B A 6 ? B 19 ? 19 1 1 A DG 7 1_555 B DC 6 1_555 -0.915 -0.649 0.305 -5.872 4.525 1.233 7 A_DG7:DC18_B A 7 ? B 18 ? 19 1 1 A DT 8 1_555 B DA 5 1_555 -0.517 -0.343 0.469 -0.076 2.120 -1.727 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 -0.180 -0.180 0.403 1.346 0.112 4.277 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DT 10 1_555 B DA 3 1_555 -0.782 -0.137 0.392 -2.061 -3.630 -0.956 10 A_DT10:DA15_B A 10 ? B 15 ? 20 1 1 A DC 11 1_555 B DG 2 1_555 -0.468 0.271 0.004 0.028 -2.993 2.514 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DC 12 1_555 B DG 1 1_555 -0.357 0.144 -0.156 0.102 -2.789 2.906 12 A_DC12:DG13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DC 2 1_555 B DG 11 1_555 -0.518 0.580 5.228 -8.293 -4.975 32.541 2.278 -1.253 5.063 -8.643 14.407 33.911 1 AA_DC1DC2:DG23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DC 2 1_555 B DG 11 1_555 A DT 3 1_555 B DA 10 1_555 0.074 -0.091 3.696 0.045 15.875 18.846 -5.714 -0.159 2.783 40.418 -0.114 24.595 2 AA_DC2DT3:DA22DG23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DT 3 1_555 B DA 10 1_555 A DC 4 1_555 B DG 9 1_555 -0.750 -0.291 3.702 2.030 29.258 34.292 -3.352 1.190 2.644 41.494 -2.879 44.835 3 AA_DT3DC4:DG21DA22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DC 4 1_555 B DG 9 1_555 A DT 5 1_555 B DA 8 1_555 0.144 1.343 3.862 4.116 -14.747 40.123 3.485 0.262 3.198 -20.610 -5.752 42.832 4 AA_DC4DT5:DA20DG21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DT 5 1_555 B DA 8 1_555 A DG 6 1_555 B DC 7 1_555 -0.479 1.633 3.535 -3.710 -10.288 36.279 3.871 0.251 3.011 -16.078 5.798 37.839 5 AA_DT5DG6:DC19DA20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DG 6 1_555 B DC 7 1_555 A DG 7 1_555 B DC 6 1_555 0.400 -0.849 4.066 -4.496 52.272 24.997 -4.129 -0.693 1.035 66.046 5.681 57.732 6 AA_DG6DG7:DC18DC19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DG 7 1_555 B DC 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.228 -0.656 3.993 3.116 -11.675 33.291 1.080 0.951 3.957 -19.592 -5.229 35.358 7 AA_DG7DT8:DA17DC18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.651 -0.005 3.479 -1.402 8.545 32.714 -1.484 0.878 3.395 14.849 2.437 33.810 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DT 10 1_555 B DA 3 1_555 -1.139 0.729 4.164 0.747 25.494 23.658 -4.208 2.072 3.370 47.811 -1.402 34.654 9 AA_DC9DT10:DA15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DT 10 1_555 B DA 3 1_555 A DC 11 1_555 B DG 2 1_555 0.991 -0.016 3.405 4.428 11.243 28.648 -2.331 -0.945 3.281 21.551 -8.488 31.043 10 AA_DT10DC11:DG14DA15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DC 12 1_555 B DG 1 1_555 -1.732 1.921 3.412 2.393 24.887 4.737 -6.419 4.971 2.355 79.078 -7.603 25.440 11 AA_DC11DC12:DG13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model UNITY _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Varian Unity' # _atom_sites.entry_id 2K0T _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P PT # loop_