data_2K1J # _entry.id 2K1J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2K1J pdb_00002k1j 10.2210/pdb2k1j/pdb RCSB RCSB100558 ? ? WWPDB D_1000100558 ? ? # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2008-04-15 _pdbx_database_PDB_obs_spr.pdb_id 2K1J _pdbx_database_PDB_obs_spr.replace_pdb_id 2JMQ _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.db_id 7210 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2K1J _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-03-05 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Palacios, A.' 1 'Garcia, P.' 2 'Padro, D.' 3 'Lopez-Hernandez, E.' 4 'Blanco, F.J.' 5 # _citation.id primary _citation.title ;Solution structure and NMR characterization of the binding to methylated histone tails of the plant homeodomain finger of the tumour suppressor ING4. ; _citation.journal_abbrev 'Febs Lett.' _citation.journal_volume 580 _citation.page_first 6903 _citation.page_last 6908 _citation.year 2006 _citation.journal_id_ASTM FEBLAL _citation.country NE _citation.journal_id_ISSN 0014-5793 _citation.journal_id_CSD 0165 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17157298 _citation.pdbx_database_id_DOI 10.1016/j.febslet.2006.11.055 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Palacios, A.' 1 ? primary 'Garcia, P.' 2 ? primary 'Padro, D.' 3 ? primary 'Lopez-Hernandez, E.' 4 ? primary 'Martin, I.' 5 ? primary 'Blanco, F.J.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Inhibitor of growth protein 4' 7325.476 1 ? ? 'PHD-type zinc-finger, UNP residues 188-249' ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name p29ING4 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQERKKK _entity_poly.pdbx_seq_one_letter_code_can MDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQERKKK _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 MET n 1 4 PRO n 1 5 VAL n 1 6 ASP n 1 7 PRO n 1 8 ASN n 1 9 GLU n 1 10 PRO n 1 11 THR n 1 12 TYR n 1 13 CYS n 1 14 LEU n 1 15 CYS n 1 16 HIS n 1 17 GLN n 1 18 VAL n 1 19 SER n 1 20 TYR n 1 21 GLY n 1 22 GLU n 1 23 MET n 1 24 ILE n 1 25 GLY n 1 26 CYS n 1 27 ASP n 1 28 ASN n 1 29 PRO n 1 30 ASP n 1 31 CYS n 1 32 SER n 1 33 ILE n 1 34 GLU n 1 35 TRP n 1 36 PHE n 1 37 HIS n 1 38 PHE n 1 39 ALA n 1 40 CYS n 1 41 VAL n 1 42 GLY n 1 43 LEU n 1 44 THR n 1 45 THR n 1 46 LYS n 1 47 PRO n 1 48 ARG n 1 49 GLY n 1 50 LYS n 1 51 TRP n 1 52 PHE n 1 53 CYS n 1 54 PRO n 1 55 ARG n 1 56 CYS n 1 57 SER n 1 58 GLN n 1 59 GLU n 1 60 ARG n 1 61 LYS n 1 62 LYS n 1 63 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ING4 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pET11d _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ING4_HUMAN _struct_ref.pdbx_db_accession Q9UNL4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQERKKK _struct_ref.pdbx_align_begin 188 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2K1J _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 63 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UNL4 _struct_ref_seq.db_align_beg 188 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 249 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 188 _struct_ref_seq.pdbx_auth_seq_align_end 249 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2K1J _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9UNL4 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'initiating methionine' _struct_ref_seq_dif.pdbx_auth_seq_num 187 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 3 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '3D CBCA(CO)NH' 1 4 1 '3D HNCACB' 1 5 1 '3D H(CCO)NH' 1 6 3 '3D HNHA' 1 7 3 '3D HNHB' 1 8 3 '3D 1H-15N NOESY' 1 9 3 '3D 1H-15N TOCSY' 1 10 1 '3D 1H-13C NOESY' 1 11 2 '3D HCCH-TOCSY' 1 12 1 '3D HNCO' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 50 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '1.2 mM [U-95% 13C; U-90% 15N] Plant Homeodomain of ING4, 95% H2O, 5% D2O' 1 '95% H2O/5% D2O' '1.2 mM [U-95% 13C; U-90% 15N] Plant Homeodomain of ING4, 100% D2O' 2 '100% D2O' '0.9 mM [U-90% 15N] Plant Homeodomain of ING4, 95% H2O, 5% D2O' 3 '95% H2O/5% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Bruker AVANCE 1 'Bruker Avance' 700 Bruker AVANCE 2 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2K1J _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 250 _pdbx_nmr_ensemble.conformers_submitted_total_number 25 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2K1J _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2K1J _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA ? 1 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Koll' refinement Amber 7.0 2 'Johnson, One Moon Scientific' 'data analysis' NMRView ? 3 'Bruker Biospin' collection XwinNMR ? 4 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 5 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRDraw ? 6 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2K1J _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2K1J _struct.title 'Plan homeodomain finger of tumour supressor ING4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2K1J _struct_keywords.pdbx_keywords 'GENE REGULATION' _struct_keywords.text ;PHD, Zn, GENE REGULATION, Acetylation, Alternative splicing, Anti-oncogene, Cell cycle, Coiled coil, Metal-binding, Nucleus, Zinc, Zinc-finger ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 23 ? ILE A 24 ? MET A 209 ILE A 210 A 2 PHE A 36 ? HIS A 37 ? PHE A 222 HIS A 223 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ILE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 24 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 210 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id PHE _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 36 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id PHE _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 222 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 250 ? 4 'BINDING SITE FOR RESIDUE ZN A 250' AC2 Software A ZN 251 ? 5 'BINDING SITE FOR RESIDUE ZN A 251' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 TYR A 12 ? TYR A 198 . ? 1_555 ? 2 AC1 4 CYS A 13 ? CYS A 199 . ? 1_555 ? 3 AC1 4 GLN A 17 ? GLN A 203 . ? 1_555 ? 4 AC1 4 HIS A 37 ? HIS A 223 . ? 1_555 ? 5 AC2 5 GLY A 25 ? GLY A 211 . ? 1_555 ? 6 AC2 5 CYS A 26 ? CYS A 212 . ? 1_555 ? 7 AC2 5 ASN A 28 ? ASN A 214 . ? 1_555 ? 8 AC2 5 PHE A 36 ? PHE A 222 . ? 1_555 ? 9 AC2 5 CYS A 53 ? CYS A 239 . ? 1_555 ? # _atom_sites.entry_id 2K1J _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 187 187 MET MET A . n A 1 2 ASP 2 188 188 ASP ASP A . n A 1 3 MET 3 189 189 MET MET A . n A 1 4 PRO 4 190 190 PRO PRO A . n A 1 5 VAL 5 191 191 VAL VAL A . n A 1 6 ASP 6 192 192 ASP ASP A . n A 1 7 PRO 7 193 193 PRO PRO A . n A 1 8 ASN 8 194 194 ASN ASN A . n A 1 9 GLU 9 195 195 GLU GLU A . n A 1 10 PRO 10 196 196 PRO PRO A . n A 1 11 THR 11 197 197 THR THR A . n A 1 12 TYR 12 198 198 TYR TYR A . n A 1 13 CYS 13 199 199 CYS CYS A . n A 1 14 LEU 14 200 200 LEU LEU A . n A 1 15 CYS 15 201 201 CYS CYS A . n A 1 16 HIS 16 202 202 HIS HIS A . n A 1 17 GLN 17 203 203 GLN GLN A . n A 1 18 VAL 18 204 204 VAL VAL A . n A 1 19 SER 19 205 205 SER SER A . n A 1 20 TYR 20 206 206 TYR TYR A . n A 1 21 GLY 21 207 207 GLY GLY A . n A 1 22 GLU 22 208 208 GLU GLU A . n A 1 23 MET 23 209 209 MET MET A . n A 1 24 ILE 24 210 210 ILE ILE A . n A 1 25 GLY 25 211 211 GLY GLY A . n A 1 26 CYS 26 212 212 CYS CYS A . n A 1 27 ASP 27 213 213 ASP ASP A . n A 1 28 ASN 28 214 214 ASN ASN A . n A 1 29 PRO 29 215 215 PRO PRO A . n A 1 30 ASP 30 216 216 ASP ASP A . n A 1 31 CYS 31 217 217 CYS CYS A . n A 1 32 SER 32 218 218 SER SER A . n A 1 33 ILE 33 219 219 ILE ILE A . n A 1 34 GLU 34 220 220 GLU GLU A . n A 1 35 TRP 35 221 221 TRP TRP A . n A 1 36 PHE 36 222 222 PHE PHE A . n A 1 37 HIS 37 223 223 HIS HIS A . n A 1 38 PHE 38 224 224 PHE PHE A . n A 1 39 ALA 39 225 225 ALA ALA A . n A 1 40 CYS 40 226 226 CYS CYS A . n A 1 41 VAL 41 227 227 VAL VAL A . n A 1 42 GLY 42 228 228 GLY GLY A . n A 1 43 LEU 43 229 229 LEU LEU A . n A 1 44 THR 44 230 230 THR THR A . n A 1 45 THR 45 231 231 THR THR A . n A 1 46 LYS 46 232 232 LYS LYS A . n A 1 47 PRO 47 233 233 PRO PRO A . n A 1 48 ARG 48 234 234 ARG ARG A . n A 1 49 GLY 49 235 235 GLY GLY A . n A 1 50 LYS 50 236 236 LYS LYS A . n A 1 51 TRP 51 237 237 TRP TRP A . n A 1 52 PHE 52 238 238 PHE PHE A . n A 1 53 CYS 53 239 239 CYS CYS A . n A 1 54 PRO 54 240 240 PRO PRO A . n A 1 55 ARG 55 241 241 ARG ARG A . n A 1 56 CYS 56 242 242 CYS CYS A . n A 1 57 SER 57 243 243 SER SER A . n A 1 58 GLN 58 244 244 GLN GLN A . n A 1 59 GLU 59 245 245 GLU GLU A . n A 1 60 ARG 60 246 246 ARG ARG A . n A 1 61 LYS 61 247 247 LYS LYS A . n A 1 62 LYS 62 248 248 LYS LYS A . n A 1 63 LYS 63 249 249 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 250 250 ZN ZN A . C 2 ZN 1 251 251 ZN ZN A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-15 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_ref_seq_dif.details' 6 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'Plant Homeodomain of ING4' 1.2 mM '[U-95% 13C; U-90% 15N]' 1 'Plant Homeodomain of ING4' 1.2 mM '[U-95% 13C; U-90% 15N]' 2 'Plant Homeodomain of ING4' 0.9 mM '[U-90% 15N]' 3 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2K1J _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total ? _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count ? _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count ? _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count 8 _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 30 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 188 ? ? 56.38 -164.03 2 1 TYR A 198 ? ? -133.56 -81.97 3 1 SER A 205 ? ? -49.04 153.48 4 1 GLU A 220 ? ? 51.60 -15.70 5 1 SER A 243 ? ? -152.94 -35.18 6 1 LYS A 247 ? ? -140.36 37.31 7 2 VAL A 191 ? ? 53.43 148.61 8 2 TYR A 198 ? ? -136.30 -67.34 9 2 HIS A 202 ? ? 71.10 54.69 10 2 SER A 205 ? ? -47.81 156.71 11 2 GLU A 220 ? ? 49.80 -10.18 12 2 LYS A 236 ? ? -57.21 108.92 13 2 CYS A 239 ? ? -58.46 171.87 14 2 SER A 243 ? ? -152.79 -39.59 15 2 LYS A 248 ? ? 38.79 80.92 16 3 ASP A 188 ? ? -156.55 46.84 17 3 TYR A 198 ? ? -137.51 -80.93 18 3 VAL A 204 ? ? -67.92 -178.89 19 3 ASP A 216 ? ? -144.58 -10.43 20 3 GLU A 220 ? ? 46.95 -9.77 21 3 SER A 243 ? ? -150.24 -32.51 22 3 LYS A 247 ? ? -146.06 56.35 23 4 MET A 189 ? ? -156.40 -50.33 24 4 TYR A 198 ? ? -137.83 -55.13 25 4 HIS A 202 ? ? 71.37 52.01 26 4 SER A 205 ? ? -47.57 155.12 27 4 GLU A 220 ? ? 50.07 -12.61 28 4 SER A 243 ? ? -151.17 -38.67 29 5 ASP A 188 ? ? -140.10 -107.52 30 5 MET A 189 ? ? -140.73 59.51 31 5 TYR A 198 ? ? -135.19 -81.20 32 5 SER A 205 ? ? -46.83 151.69 33 5 GLU A 220 ? ? 50.83 -16.27 34 5 SER A 243 ? ? -149.17 -34.82 35 6 PRO A 190 ? ? -80.65 45.39 36 6 TYR A 198 ? ? -136.38 -81.18 37 6 LEU A 200 ? ? -59.52 -9.72 38 6 VAL A 204 ? ? -69.20 -179.62 39 6 SER A 205 ? ? -45.67 150.16 40 6 GLU A 220 ? ? 50.14 -15.70 41 6 SER A 243 ? ? -153.71 -34.07 42 6 LYS A 248 ? ? 43.78 72.62 43 7 MET A 189 ? ? -146.00 -49.40 44 7 TYR A 198 ? ? -139.46 -67.29 45 7 HIS A 202 ? ? 72.45 52.20 46 7 SER A 205 ? ? -47.94 157.44 47 7 GLU A 220 ? ? 48.36 -7.75 48 7 CYS A 239 ? ? -59.25 172.51 49 7 SER A 243 ? ? -157.08 -39.59 50 7 LYS A 248 ? ? -150.80 50.42 51 8 PRO A 190 ? ? -80.84 30.79 52 8 TYR A 198 ? ? -139.04 -54.10 53 8 HIS A 202 ? ? 71.09 54.86 54 8 SER A 205 ? ? -43.39 152.78 55 8 GLU A 220 ? ? 50.33 -10.21 56 8 SER A 243 ? ? -151.22 -28.14 57 9 PRO A 190 ? ? -77.19 29.95 58 9 TYR A 198 ? ? -137.61 -83.66 59 9 VAL A 204 ? ? -68.57 -178.72 60 9 GLU A 220 ? ? 47.67 -9.47 61 9 SER A 243 ? ? -149.33 -39.47 62 10 ASN A 194 ? ? -88.18 38.59 63 10 TYR A 198 ? ? -136.66 -80.68 64 10 SER A 205 ? ? -46.34 151.05 65 10 GLU A 220 ? ? 50.36 -13.81 66 10 SER A 243 ? ? -154.01 -40.91 67 11 TYR A 198 ? ? -133.98 -83.83 68 11 CYS A 199 ? ? -55.28 170.19 69 11 VAL A 204 ? ? -69.24 -178.67 70 11 GLU A 220 ? ? 48.16 -8.55 71 11 SER A 243 ? ? -150.98 -41.60 72 12 ASN A 194 ? ? -106.20 62.61 73 12 TYR A 198 ? ? -134.47 -83.97 74 12 VAL A 204 ? ? -69.17 -179.40 75 12 ASP A 216 ? ? -144.39 -10.86 76 12 GLU A 220 ? ? 47.63 -8.59 77 12 SER A 243 ? ? -147.87 -33.06 78 13 MET A 189 ? ? -160.55 91.11 79 13 TYR A 198 ? ? -135.34 -83.59 80 13 VAL A 204 ? ? -69.61 -178.21 81 13 ASP A 216 ? ? -144.16 -9.87 82 13 GLU A 220 ? ? 48.82 -11.15 83 13 SER A 243 ? ? -151.65 -42.08 84 13 LYS A 247 ? ? -138.64 -36.87 85 14 VAL A 191 ? ? 51.92 153.76 86 14 TYR A 198 ? ? -136.79 -83.27 87 14 VAL A 204 ? ? -67.83 -179.10 88 14 SER A 205 ? ? -46.31 150.17 89 14 GLU A 220 ? ? 47.28 -7.59 90 14 SER A 243 ? ? -149.77 -42.43 91 14 LYS A 247 ? ? -137.77 -67.93 92 14 LYS A 248 ? ? -165.19 92.34 93 15 TYR A 198 ? ? -134.40 -81.26 94 15 SER A 205 ? ? -44.34 150.34 95 15 GLU A 220 ? ? 50.02 -13.64 96 15 SER A 243 ? ? -152.97 -36.10 97 16 PRO A 190 ? ? -77.23 23.47 98 16 ASN A 194 ? ? -89.01 40.58 99 16 TYR A 198 ? ? -136.57 -79.62 100 16 VAL A 204 ? ? -69.05 -179.26 101 16 SER A 205 ? ? -47.91 153.65 102 16 GLU A 220 ? ? 51.51 -15.68 103 16 SER A 243 ? ? -151.67 -33.28 104 17 MET A 189 ? ? -154.30 56.35 105 17 ASN A 194 ? ? -126.07 -158.96 106 17 TYR A 198 ? ? -135.09 -76.92 107 17 VAL A 204 ? ? -66.00 -179.89 108 17 SER A 205 ? ? -47.24 150.81 109 17 GLU A 220 ? ? 48.83 -11.24 110 17 SER A 243 ? ? -150.61 -40.90 111 18 ASN A 194 ? ? -91.31 40.48 112 18 TYR A 198 ? ? -135.77 -82.68 113 18 GLU A 220 ? ? 50.45 -15.17 114 18 SER A 243 ? ? -150.29 -36.29 115 18 LYS A 247 ? ? -149.73 -33.21 116 19 ASN A 194 ? ? -81.95 41.35 117 19 TYR A 198 ? ? -135.56 -83.88 118 19 VAL A 204 ? ? -69.76 -178.97 119 19 ASP A 216 ? ? -144.52 -10.94 120 19 GLU A 220 ? ? 46.98 -8.08 121 19 SER A 243 ? ? -152.61 -40.02 122 20 MET A 189 ? ? 34.00 67.61 123 20 PRO A 190 ? ? -76.63 22.99 124 20 ASN A 194 ? ? -82.04 45.09 125 20 TYR A 198 ? ? -133.45 -83.98 126 20 CYS A 199 ? ? -55.13 170.11 127 20 VAL A 204 ? ? -68.51 -179.84 128 20 GLU A 220 ? ? 48.31 -9.71 129 20 SER A 243 ? ? -151.10 -42.87 130 21 TYR A 198 ? ? -138.08 -63.74 131 21 HIS A 202 ? ? 70.32 53.40 132 21 GLU A 220 ? ? 47.32 -7.68 133 21 SER A 243 ? ? -149.90 -33.76 134 21 LYS A 247 ? ? 75.27 -37.58 135 22 TYR A 198 ? ? -135.51 -79.89 136 22 VAL A 204 ? ? -67.78 -177.90 137 22 GLU A 220 ? ? 48.11 -9.14 138 22 SER A 243 ? ? -152.27 -31.00 139 22 ARG A 246 ? ? 37.92 40.72 140 22 LYS A 247 ? ? -147.94 -13.20 141 22 LYS A 248 ? ? -146.93 33.49 142 23 TYR A 198 ? ? -135.27 -79.17 143 23 VAL A 204 ? ? -68.88 -179.44 144 23 SER A 205 ? ? -47.61 153.37 145 23 GLU A 220 ? ? 51.26 -16.52 146 23 SER A 243 ? ? -151.92 -38.52 147 23 LYS A 247 ? ? 29.84 61.11 148 23 LYS A 248 ? ? 55.94 73.36 149 24 ASN A 194 ? ? -105.29 58.26 150 24 TYR A 198 ? ? -135.36 -68.71 151 24 HIS A 202 ? ? 70.48 54.72 152 24 ASP A 216 ? ? -146.37 -8.85 153 24 GLU A 220 ? ? 48.70 -9.62 154 24 CYS A 239 ? ? -59.18 171.97 155 24 SER A 243 ? ? -149.69 -40.10 156 24 LYS A 247 ? ? -151.25 -37.38 157 25 PRO A 190 ? ? -81.16 32.54 158 25 TYR A 198 ? ? -135.83 -72.79 159 25 SER A 205 ? ? -45.19 154.42 160 25 GLU A 220 ? ? 50.49 -11.29 161 25 SER A 243 ? ? -150.92 -32.03 162 25 LYS A 247 ? ? -112.48 -81.19 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #