HEADER GENE REGULATION 05-MAR-08 2K1J TITLE PLAN HOMEODOMAIN FINGER OF TUMOUR SUPRESSOR ING4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INHIBITOR OF GROWTH PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHD-TYPE ZINC-FINGER, UNP RESIDUES 188-249; COMPND 5 SYNONYM: P29ING4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ING4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET11D KEYWDS PHD, ZN, GENE REGULATION, ACETYLATION, ALTERNATIVE SPLICING, ANTI- KEYWDS 2 ONCOGENE, CELL CYCLE, COILED COIL, METAL-BINDING, NUCLEUS, ZINC, KEYWDS 3 ZINC-FINGER EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR A.PALACIOS,P.GARCIA,D.PADRO,E.LOPEZ-HERNANDEZ,F.J.BLANCO REVDAT 3 16-MAR-22 2K1J 1 REMARK SEQADV REVDAT 2 24-FEB-09 2K1J 1 VERSN REVDAT 1 15-APR-08 2K1J 0 SPRSDE 15-APR-08 2K1J 2JMQ JRNL AUTH A.PALACIOS,P.GARCIA,D.PADRO,E.LOPEZ-HERNANDEZ,I.MARTIN, JRNL AUTH 2 F.J.BLANCO JRNL TITL SOLUTION STRUCTURE AND NMR CHARACTERIZATION OF THE BINDING JRNL TITL 2 TO METHYLATED HISTONE TAILS OF THE PLANT HOMEODOMAIN FINGER JRNL TITL 3 OF THE TUMOUR SUPPRESSOR ING4. JRNL REF FEBS LETT. V. 580 6903 2006 JRNL REFN ISSN 0014-5793 JRNL PMID 17157298 JRNL DOI 10.1016/J.FEBSLET.2006.11.055 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, AMBER 7.0 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), CASE, REMARK 3 DARDEN, CHEATHAM III, SIMMERLING, WANG, DUKE, LUO, REMARK 3 AND KOLL (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K1J COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000100558. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-95% 13C; U-90% 15N] REMARK 210 PLANT HOMEODOMAIN OF ING4, 95% REMARK 210 H2O, 5% D2O; 1.2 MM [U-95% 13C; REMARK 210 U-90% 15N] PLANT HOMEODOMAIN OF REMARK 210 ING4, 100% D2O; 0.9 MM [U-90% REMARK 210 15N] PLANT HOMEODOMAIN OF ING4, REMARK 210 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 H(CCO)NH; 3D HNHA; 3D HNHB; 3D REMARK 210 1H-15N NOESY; 3D 1H-15N TOCSY; REMARK 210 3D 1H-13C NOESY; 3D HCCH-TOCSY; REMARK 210 3D HNCO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, XWINNMR, NMRPIPE, REMARK 210 NMRDRAW REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 188 -164.03 56.38 REMARK 500 1 TYR A 198 -81.97 -133.56 REMARK 500 1 SER A 205 153.48 -49.04 REMARK 500 1 GLU A 220 -15.70 51.60 REMARK 500 1 SER A 243 -35.18 -152.94 REMARK 500 1 LYS A 247 37.31 -140.36 REMARK 500 2 VAL A 191 148.61 53.43 REMARK 500 2 TYR A 198 -67.34 -136.30 REMARK 500 2 HIS A 202 54.69 71.10 REMARK 500 2 SER A 205 156.71 -47.81 REMARK 500 2 GLU A 220 -10.18 49.80 REMARK 500 2 LYS A 236 108.92 -57.21 REMARK 500 2 CYS A 239 171.87 -58.46 REMARK 500 2 SER A 243 -39.59 -152.79 REMARK 500 2 LYS A 248 80.92 38.79 REMARK 500 3 ASP A 188 46.84 -156.55 REMARK 500 3 TYR A 198 -80.93 -137.51 REMARK 500 3 VAL A 204 -178.89 -67.92 REMARK 500 3 ASP A 216 -10.43 -144.58 REMARK 500 3 GLU A 220 -9.77 46.95 REMARK 500 3 SER A 243 -32.51 -150.24 REMARK 500 3 LYS A 247 56.35 -146.06 REMARK 500 4 MET A 189 -50.33 -156.40 REMARK 500 4 TYR A 198 -55.13 -137.83 REMARK 500 4 HIS A 202 52.01 71.37 REMARK 500 4 SER A 205 155.12 -47.57 REMARK 500 4 GLU A 220 -12.61 50.07 REMARK 500 4 SER A 243 -38.67 -151.17 REMARK 500 5 ASP A 188 -107.52 -140.10 REMARK 500 5 MET A 189 59.51 -140.73 REMARK 500 5 TYR A 198 -81.20 -135.19 REMARK 500 5 SER A 205 151.69 -46.83 REMARK 500 5 GLU A 220 -16.27 50.83 REMARK 500 5 SER A 243 -34.82 -149.17 REMARK 500 6 PRO A 190 45.39 -80.65 REMARK 500 6 TYR A 198 -81.18 -136.38 REMARK 500 6 LEU A 200 -9.72 -59.52 REMARK 500 6 VAL A 204 -179.62 -69.20 REMARK 500 6 SER A 205 150.16 -45.67 REMARK 500 6 GLU A 220 -15.70 50.14 REMARK 500 6 SER A 243 -34.07 -153.71 REMARK 500 6 LYS A 248 72.62 43.78 REMARK 500 7 MET A 189 -49.40 -146.00 REMARK 500 7 TYR A 198 -67.29 -139.46 REMARK 500 7 HIS A 202 52.20 72.45 REMARK 500 7 SER A 205 157.44 -47.94 REMARK 500 7 GLU A 220 -7.75 48.36 REMARK 500 7 CYS A 239 172.51 -59.25 REMARK 500 7 SER A 243 -39.59 -157.08 REMARK 500 7 LYS A 248 50.42 -150.80 REMARK 500 REMARK 500 THIS ENTRY HAS 162 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 251 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7210 RELATED DB: BMRB DBREF 2K1J A 188 249 UNP Q9UNL4 ING4_HUMAN 188 249 SEQADV 2K1J MET A 187 UNP Q9UNL4 INITIATING METHIONINE SEQRES 1 A 63 MET ASP MET PRO VAL ASP PRO ASN GLU PRO THR TYR CYS SEQRES 2 A 63 LEU CYS HIS GLN VAL SER TYR GLY GLU MET ILE GLY CYS SEQRES 3 A 63 ASP ASN PRO ASP CYS SER ILE GLU TRP PHE HIS PHE ALA SEQRES 4 A 63 CYS VAL GLY LEU THR THR LYS PRO ARG GLY LYS TRP PHE SEQRES 5 A 63 CYS PRO ARG CYS SER GLN GLU ARG LYS LYS LYS HET ZN A 250 1 HET ZN A 251 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) SHEET 1 A 2 MET A 209 ILE A 210 0 SHEET 2 A 2 PHE A 222 HIS A 223 -1 O PHE A 222 N ILE A 210 SITE 1 AC1 4 TYR A 198 CYS A 199 GLN A 203 HIS A 223 SITE 1 AC2 5 GLY A 211 CYS A 212 ASN A 214 PHE A 222 SITE 2 AC2 5 CYS A 239 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1