HEADER ISOMERASE 17-AUG-08 2K7N TITLE SOLUTION STRUCTURE OF THE PPIL1 BOUND TO A FRAGMENT OF SKIP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPIL1, PPIASE, ROTAMASE; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPIL1, CYPL1, CGI-124, UNQ2425/PRO4984; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS BETA BARREL, DISORDER-ORDER TRANSITION, HOOK-LIKE, ISOMERASE, MRNA KEYWDS 2 PROCESSING, MRNA SPLICING, ROTAMASE, SPLICEOSOME EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.WANG,J.WU,Y.SHI REVDAT 3 14-JUN-23 2K7N 1 REMARK REVDAT 2 26-FEB-20 2K7N 1 REMARK SEQADV REVDAT 1 15-SEP-09 2K7N 0 JRNL AUTH X.WANG,J.WU,Y.SHI JRNL TITL SOLUTION STRUCTURE OF PPIL1 BOUND TO THE FRAGMENT OF SKIP JRNL TITL 2 SHOWN DISORDER-ORDER TRANSITION INDUCED BY PROTEIN BINDING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USING BY CNS IN EXPLICT WATER REMARK 4 REMARK 4 2K7N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000100778. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 100% D2O, 100% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOES REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : CYANA AND SIMULATED ANNEALIN REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : 20 STRUCTURES FOR LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 58 OE2 GLU A 146 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 8 -173.49 176.49 REMARK 500 1 PHE A 60 -87.52 -128.64 REMARK 500 1 ASP A 66 83.33 48.07 REMARK 500 1 LEU A 86 97.40 -59.32 REMARK 500 1 HIS A 87 85.45 -168.22 REMARK 500 1 PRO A 88 93.70 -67.41 REMARK 500 1 THR A 107 51.20 -101.08 REMARK 500 1 PRO A 118 106.63 -59.41 REMARK 500 1 PHE A 129 77.04 -158.77 REMARK 500 1 GLN A 150 -97.76 18.67 REMARK 500 1 LEU A 198 38.87 -143.98 REMARK 500 1 ASP A 199 -19.23 76.43 REMARK 500 2 ILE A 4 98.06 74.88 REMARK 500 2 PHE A 60 -80.59 -133.23 REMARK 500 2 ASP A 66 92.60 59.67 REMARK 500 2 ARG A 72 21.77 -150.38 REMARK 500 2 ALA A 75 16.30 58.98 REMARK 500 2 LEU A 86 100.67 -49.61 REMARK 500 2 PRO A 105 89.93 -61.06 REMARK 500 2 PHE A 129 73.31 -159.71 REMARK 500 2 GLN A 134 42.77 36.86 REMARK 500 2 SER A 149 -80.67 -142.64 REMARK 500 2 ASP A 151 -13.26 69.87 REMARK 500 2 SER A 170 101.36 -59.72 REMARK 500 2 SER A 174 -68.00 -158.14 REMARK 500 3 ILE A 4 107.19 76.58 REMARK 500 3 GLN A 10 130.12 72.25 REMARK 500 3 PHE A 60 -80.44 -134.40 REMARK 500 3 ASP A 66 73.14 31.09 REMARK 500 3 GLN A 81 174.06 -58.75 REMARK 500 3 LEU A 86 106.32 -57.12 REMARK 500 3 HIS A 87 71.01 -164.92 REMARK 500 3 PHE A 92 89.56 -63.98 REMARK 500 3 THR A 107 53.55 -92.73 REMARK 500 3 SER A 110 67.12 -100.22 REMARK 500 3 PHE A 129 72.98 -156.32 REMARK 500 3 GLU A 146 -169.84 -103.79 REMARK 500 3 ASP A 155 -43.08 69.47 REMARK 500 3 PRO A 197 -70.65 -66.38 REMARK 500 4 ILE A 4 102.66 66.30 REMARK 500 4 PRO A 6 31.41 -79.11 REMARK 500 4 PHE A 60 -81.39 -138.30 REMARK 500 4 ASP A 66 84.08 42.15 REMARK 500 4 ALA A 75 19.75 56.30 REMARK 500 4 PHE A 82 -71.53 -100.50 REMARK 500 4 LEU A 86 99.94 -48.89 REMARK 500 4 HIS A 87 83.63 -170.69 REMARK 500 4 PRO A 88 84.13 -65.90 REMARK 500 4 PHE A 129 72.83 -154.18 REMARK 500 4 SER A 149 -57.47 -166.90 REMARK 500 REMARK 500 THIS ENTRY HAS 283 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15922 RELATED DB: BMRB DBREF 2K7N A 1 166 UNP Q9Y3C6 PPIL1_HUMAN 1 166 SEQADV 2K7N GLY A 167 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N GLY A 168 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N GLY A 169 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N SER A 170 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N GLY A 171 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N GLY A 172 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N GLY A 173 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N SER A 174 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N GLY A 175 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N GLY A 176 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N GLY A 177 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N SER A 178 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N GLY A 179 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N GLY A 180 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N GLY A 181 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N SER A 182 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N GLY A 183 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N ASP A 184 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N GLY A 185 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N GLY A 186 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N ALA A 187 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N PHE A 188 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N PRO A 189 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N GLU A 190 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N ILE A 191 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N HIS A 192 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N VAL A 193 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N ALA A 194 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N GLN A 195 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N TYR A 196 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N PRO A 197 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N LEU A 198 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N ASP A 199 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N MET A 200 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N GLY A 201 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N ARG A 202 UNP Q9Y3C6 EXPRESSION TAG SEQADV 2K7N LYS A 203 UNP Q9Y3C6 EXPRESSION TAG SEQRES 1 A 203 MET ALA ALA ILE PRO PRO ASP SER TRP GLN PRO PRO ASN SEQRES 2 A 203 VAL TYR LEU GLU THR SER MET GLY ILE ILE VAL LEU GLU SEQRES 3 A 203 LEU TYR TRP LYS HIS ALA PRO LYS THR CYS LYS ASN PHE SEQRES 4 A 203 ALA GLU LEU ALA ARG ARG GLY TYR TYR ASN GLY THR LYS SEQRES 5 A 203 PHE HIS ARG ILE ILE LYS ASP PHE MET ILE GLN GLY GLY SEQRES 6 A 203 ASP PRO THR GLY THR GLY ARG GLY GLY ALA SER ILE TYR SEQRES 7 A 203 GLY LYS GLN PHE GLU ASP GLU LEU HIS PRO ASP LEU LYS SEQRES 8 A 203 PHE THR GLY ALA GLY ILE LEU ALA MET ALA ASN ALA GLY SEQRES 9 A 203 PRO ASP THR ASN GLY SER GLN PHE PHE VAL THR LEU ALA SEQRES 10 A 203 PRO THR GLN TRP LEU ASP GLY LYS HIS THR ILE PHE GLY SEQRES 11 A 203 ARG VAL CYS GLN GLY ILE GLY MET VAL ASN ARG VAL GLY SEQRES 12 A 203 MET VAL GLU THR ASN SER GLN ASP ARG PRO VAL ASP ASP SEQRES 13 A 203 VAL LYS ILE ILE LYS ALA TYR PRO SER GLY GLY GLY GLY SEQRES 14 A 203 SER GLY GLY GLY SER GLY GLY GLY SER GLY GLY GLY SER SEQRES 15 A 203 GLY ASP GLY GLY ALA PHE PRO GLU ILE HIS VAL ALA GLN SEQRES 16 A 203 TYR PRO LEU ASP MET GLY ARG LYS HELIX 1 1 LYS A 34 GLY A 46 1 13 HELIX 2 2 TYR A 47 THR A 51 5 5 HELIX 3 3 GLY A 135 MET A 144 1 10 SHEET 1 A 8 LYS A 52 ILE A 57 0 SHEET 2 A 8 MET A 61 GLY A 65 -1 O GLY A 65 N LYS A 52 SHEET 3 A 8 ASN A 108 THR A 115 -1 O VAL A 114 N ILE A 62 SHEET 4 A 8 ILE A 97 ASN A 102 -1 N ALA A 99 O PHE A 113 SHEET 5 A 8 ILE A 128 CYS A 133 -1 O GLY A 130 N LEU A 98 SHEET 6 A 8 ILE A 22 LEU A 27 -1 N VAL A 24 O CYS A 133 SHEET 7 A 8 ASN A 13 THR A 18 -1 N VAL A 14 O LEU A 25 SHEET 8 A 8 ILE A 159 PRO A 164 -1 O LYS A 161 N GLU A 17 SHEET 1 B 2 THR A 147 SER A 149 0 SHEET 2 B 2 ARG A 152 PRO A 153 -1 O ARG A 152 N ASN A 148 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1