data_2K9Y # _entry.id 2K9Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2K9Y pdb_00002k9y 10.2210/pdb2k9y/pdb RCSB RCSB100861 ? ? BMRB 16005 ? ? WWPDB D_1000100861 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 2k1k PDB 'EphA1 pH 4.3' unspecified 2k1l PDB 'EphA1 pH 6.3' unspecified 16005 BMRB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2K9Y _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2008-10-27 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mayzel, M.L.' 1 'Bocharov, E.V.' 2 'Volynsky, P.E.' 3 'Arseniev, A.S.' 4 # _citation.id primary _citation.title 'Left-Handed Dimer of EphA2 Transmembrane Domain: Helix Packing Diversity among Receptor Tyrosine Kinases' _citation.journal_abbrev Biophys.J. _citation.journal_volume 98 _citation.page_first 881 _citation.page_last 889 _citation.year 2010 _citation.journal_id_ASTM BIOJAU _citation.country US _citation.journal_id_ISSN 0006-3495 _citation.journal_id_CSD 0030 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20197042 _citation.pdbx_database_id_DOI 10.1016/j.bpj.2009.11.008 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bocharov, E.V.' 1 ? primary 'Mayzel, M.L.' 2 ? primary 'Volynsky, P.E.' 3 ? primary 'Mineev, K.S.' 4 ? primary 'Tkach, E.N.' 5 ? primary 'Ermolyuk, Y.S.' 6 ? primary 'Schulga, A.A.' 7 ? primary 'Efremov, R.G.' 8 ? primary 'Arseniev, A.S.' 9 ? # _cell.entry_id 2K9Y _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2K9Y _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ephrin type-A receptor 2' 4283.052 2 2.7.10.1 ? 'EphA2_TM, residues 523-563' ? 2 water nat water 18.015 3 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Tyrosine-protein kinase receptor ECK, Epithelial cell kinase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code EFQTLSPEGSGNLAVIGGVAVGVVLLLVLAGVGFFIHRRRK _entity_poly.pdbx_seq_one_letter_code_can EFQTLSPEGSGNLAVIGGVAVGVVLLLVLAGVGFFIHRRRK _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 PHE n 1 3 GLN n 1 4 THR n 1 5 LEU n 1 6 SER n 1 7 PRO n 1 8 GLU n 1 9 GLY n 1 10 SER n 1 11 GLY n 1 12 ASN n 1 13 LEU n 1 14 ALA n 1 15 VAL n 1 16 ILE n 1 17 GLY n 1 18 GLY n 1 19 VAL n 1 20 ALA n 1 21 VAL n 1 22 GLY n 1 23 VAL n 1 24 VAL n 1 25 LEU n 1 26 LEU n 1 27 LEU n 1 28 VAL n 1 29 LEU n 1 30 ALA n 1 31 GLY n 1 32 VAL n 1 33 GLY n 1 34 PHE n 1 35 PHE n 1 36 ILE n 1 37 HIS n 1 38 ARG n 1 39 ARG n 1 40 ARG n 1 41 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'EPHA2, ECK' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type vector _entity_src_gen.pdbx_host_org_vector PGEMEX1 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code EPHA2_HUMAN _struct_ref.pdbx_db_accession P29317 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code EFQTLSPEGSGNLAVIGGVAVGVVLLLVLAGVGFFIHRRRK _struct_ref.pdbx_align_begin 523 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2K9Y A 1 ? 41 ? P29317 523 ? 563 ? 523 563 2 1 2K9Y B 1 ? 41 ? P29317 523 ? 563 ? 523 563 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 2 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '3D HNCO' 1 4 1 '3D HNCA' 1 5 1 '3D HCCH-TOCSY' 1 6 2 '3D 1H-15N NOESY' 1 7 2 '3D 1H-15N TOCSY' 1 8 1 '3D 1H-13C NOESY' 1 9 2 '3D HNHB' 1 10 2 '3D HNHA' 1 11 2 '2D 1H-1H NOESY' 1 12 3 '13C F1-filtered/F3-edited-NOESY' 1 13 2 15N-T2 1 14 2 15N-T1 1 15 2 15N-NOE 1 16 2 '2D 1H-1H TOCSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 10 _pdbx_nmr_exptl_sample_conditions.pH 5 _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 313 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;3 mM [U-95% 13C; U-95% 15N] EphA2_TM 15N,13C, 96 mM [U-2H] DHPC, 24 mM [U-2H] DMPC, 1.5 mM NaN3, 1 mM EDTA, 10 mM phosphate buffer, 95% H2O/5% D2O ; 1 '95% H2O/5% D2O' ;3 mM [U-95% 15N] EphA2_TM 15N, 96 mM [U-2H] DHPC, 24 mM [U-2H] DMPC, 1.5 mM NaN3, 1 mM EDTA, 10 mM phosphate buffer, 90% H2O/10% D2O ; 2 '90% H2O/10% D2O' ;1.5 mM [U-95% 13C; U-95% 15N] EphA2_TM 15N,13C, 96 mM [U-2H] DHPC, 24 mM [U-2H] DMPC, 1.5 mM NaN3, 1 mM EDTA, 10 mM phosphate buffer, 1.5 mM EphA2_TM, 100% D2O ; 3 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Varian UNITY 1 'Varian Unity' 600 Varian INOVA 2 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2K9Y _pdbx_nmr_refine.method 'TORSION ANGLE DYNAMICS, molecular dynamics, TORSION ANGLE DYNAMICS' _pdbx_nmr_refine.details ;First 15 models represents Torsion Angle Dynamics with applied NMR restrains using CYANA software, Last two models (16 and 17) represents MD relaxation in the explicit hydrated DPPC bilayer with NMR restrains using GROMACS software ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 17 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2K9Y _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2K9Y _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 'spectra processing' NMRPipe ? 1 'Keller and Wuthrich' assignment CARA '1.5.5, 1.8' 2 'Guntert, Mumenthaler and Wuthrich' 'structure calculation' CYANA 2.1 3 Varian collection VNMR ? 4 'Erik Lindahl' 'geometry optimization' GROMACS 3.3.2 5 'Erik Lindahl' refinement GROMACS 3.3.2 6 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2K9Y _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2K9Y _struct.title 'EphA2 dimeric structure in the lipidic bicelle at pH 5.0' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2K9Y _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, Glycoprotein, Kinase, Membrane, Nucleotide-binding, Phosphoprotein, Polymorphism, Receptor, Transferase, Transmembrane, Tyrosine-protein kinase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 13 ? PHE A 35 ? LEU A 535 PHE A 557 1 ? 23 HELX_P HELX_P2 2 LEU B 13 ? PHE B 35 ? LEU B 535 PHE B 557 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 2K9Y _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 523 523 GLU GLU A . n A 1 2 PHE 2 524 524 PHE PHE A . n A 1 3 GLN 3 525 525 GLN GLN A . n A 1 4 THR 4 526 526 THR THR A . n A 1 5 LEU 5 527 527 LEU LEU A . n A 1 6 SER 6 528 528 SER SER A . n A 1 7 PRO 7 529 529 PRO PRO A . n A 1 8 GLU 8 530 530 GLU GLU A . n A 1 9 GLY 9 531 531 GLY GLY A . n A 1 10 SER 10 532 532 SER SER A . n A 1 11 GLY 11 533 533 GLY GLY A . n A 1 12 ASN 12 534 534 ASN ASN A . n A 1 13 LEU 13 535 535 LEU LEU A . n A 1 14 ALA 14 536 536 ALA ALA A . n A 1 15 VAL 15 537 537 VAL VAL A . n A 1 16 ILE 16 538 538 ILE ILE A . n A 1 17 GLY 17 539 539 GLY GLY A . n A 1 18 GLY 18 540 540 GLY GLY A . n A 1 19 VAL 19 541 541 VAL VAL A . n A 1 20 ALA 20 542 542 ALA ALA A . n A 1 21 VAL 21 543 543 VAL VAL A . n A 1 22 GLY 22 544 544 GLY GLY A . n A 1 23 VAL 23 545 545 VAL VAL A . n A 1 24 VAL 24 546 546 VAL VAL A . n A 1 25 LEU 25 547 547 LEU LEU A . n A 1 26 LEU 26 548 548 LEU LEU A . n A 1 27 LEU 27 549 549 LEU LEU A . n A 1 28 VAL 28 550 550 VAL VAL A . n A 1 29 LEU 29 551 551 LEU LEU A . n A 1 30 ALA 30 552 552 ALA ALA A . n A 1 31 GLY 31 553 553 GLY GLY A . n A 1 32 VAL 32 554 554 VAL VAL A . n A 1 33 GLY 33 555 555 GLY GLY A . n A 1 34 PHE 34 556 556 PHE PHE A . n A 1 35 PHE 35 557 557 PHE PHE A . n A 1 36 ILE 36 558 558 ILE ILE A . n A 1 37 HIS 37 559 559 HIS HIS A . n A 1 38 ARG 38 560 560 ARG ARG A . n A 1 39 ARG 39 561 561 ARG ARG A . n A 1 40 ARG 40 562 562 ARG ARG A . n A 1 41 LYS 41 563 563 LYS LYS A . n B 1 1 GLU 1 523 523 GLU GLU B . n B 1 2 PHE 2 524 524 PHE PHE B . n B 1 3 GLN 3 525 525 GLN GLN B . n B 1 4 THR 4 526 526 THR THR B . n B 1 5 LEU 5 527 527 LEU LEU B . n B 1 6 SER 6 528 528 SER SER B . n B 1 7 PRO 7 529 529 PRO PRO B . n B 1 8 GLU 8 530 530 GLU GLU B . n B 1 9 GLY 9 531 531 GLY GLY B . n B 1 10 SER 10 532 532 SER SER B . n B 1 11 GLY 11 533 533 GLY GLY B . n B 1 12 ASN 12 534 534 ASN ASN B . n B 1 13 LEU 13 535 535 LEU LEU B . n B 1 14 ALA 14 536 536 ALA ALA B . n B 1 15 VAL 15 537 537 VAL VAL B . n B 1 16 ILE 16 538 538 ILE ILE B . n B 1 17 GLY 17 539 539 GLY GLY B . n B 1 18 GLY 18 540 540 GLY GLY B . n B 1 19 VAL 19 541 541 VAL VAL B . n B 1 20 ALA 20 542 542 ALA ALA B . n B 1 21 VAL 21 543 543 VAL VAL B . n B 1 22 GLY 22 544 544 GLY GLY B . n B 1 23 VAL 23 545 545 VAL VAL B . n B 1 24 VAL 24 546 546 VAL VAL B . n B 1 25 LEU 25 547 547 LEU LEU B . n B 1 26 LEU 26 548 548 LEU LEU B . n B 1 27 LEU 27 549 549 LEU LEU B . n B 1 28 VAL 28 550 550 VAL VAL B . n B 1 29 LEU 29 551 551 LEU LEU B . n B 1 30 ALA 30 552 552 ALA ALA B . n B 1 31 GLY 31 553 553 GLY GLY B . n B 1 32 VAL 32 554 554 VAL VAL B . n B 1 33 GLY 33 555 555 GLY GLY B . n B 1 34 PHE 34 556 556 PHE PHE B . n B 1 35 PHE 35 557 557 PHE PHE B . n B 1 36 ILE 36 558 558 ILE ILE B . n B 1 37 HIS 37 559 559 HIS HIS B . n B 1 38 ARG 38 560 560 ARG ARG B . n B 1 39 ARG 39 561 561 ARG ARG B . n B 1 40 ARG 40 562 562 ARG ARG B . n B 1 41 LYS 41 563 563 LYS LYS B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1100 ? 1 MORE -12 ? 1 'SSA (A^2)' 7720 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-08-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Experimental preparation' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_sample_details 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_assembly_prop 5 3 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_sample_details.contents' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'EphA2_TM 15N,13C' 3 mM '[U-95% 13C; U-95% 15N]' 1 DHPC 96 mM '[U-2H]' 1 DMPC 24 mM '[U-2H]' 1 NaN3 1.5 mM ? 1 EDTA 1 mM ? 1 'phosphate buffer' 10 mM ? 1 'EphA2_TM 15N' 3 mM '[U-95% 15N]' 2 DHPC 96 mM '[U-2H]' 2 DMPC 24 mM '[U-2H]' 2 NaN3 1.5 mM ? 2 EDTA 1 mM ? 2 'phosphate buffer' 10 mM ? 2 'EphA2_TM 15N,13C' 1.5 mM '[U-95% 13C; U-95% 15N]' 3 DHPC 96 mM '[U-2H]' 3 DMPC 24 mM '[U-2H]' 3 NaN3 1.5 mM ? 3 EDTA 1 mM ? 3 'phosphate buffer' 10 mM ? 3 EphA2_TM 1.5 mM ? 3 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 16 _pdbx_validate_close_contact.auth_atom_id_1 H3 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 523 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OE2 _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 GLU _pdbx_validate_close_contact.auth_seq_id_2 523 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.56 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 16 CA A THR 526 ? ? CB A THR 526 ? ? OG1 A THR 526 ? ? 121.67 109.00 12.67 2.10 N 2 16 CA A VAL 554 ? ? CB A VAL 554 ? ? CG2 A VAL 554 ? ? 120.48 110.90 9.58 1.50 N 3 16 NE A ARG 560 ? ? CZ A ARG 560 ? ? NH1 A ARG 560 ? ? 117.04 120.30 -3.26 0.50 N 4 16 NE A ARG 561 ? ? CZ A ARG 561 ? ? NH1 A ARG 561 ? ? 115.80 120.30 -4.50 0.50 N 5 16 NE A ARG 562 ? ? CZ A ARG 562 ? ? NH1 A ARG 562 ? ? 123.77 120.30 3.47 0.50 N 6 16 NE A ARG 562 ? ? CZ A ARG 562 ? ? NH2 A ARG 562 ? ? 117.19 120.30 -3.11 0.50 N 7 16 CA B THR 526 ? ? CB B THR 526 ? ? CG2 B THR 526 ? ? 121.48 112.40 9.08 1.40 N 8 16 CA B VAL 543 ? ? CB B VAL 543 ? ? CG2 B VAL 543 ? ? 125.51 110.90 14.61 1.50 N 9 16 CD B ARG 562 ? ? NE B ARG 562 ? ? CZ B ARG 562 ? ? 134.06 123.60 10.46 1.40 N 10 16 NE B ARG 562 ? ? CZ B ARG 562 ? ? NH1 B ARG 562 ? ? 123.75 120.30 3.45 0.50 N 11 17 CG1 A VAL 546 ? ? CB A VAL 546 ? ? CG2 A VAL 546 ? ? 100.47 110.90 -10.43 1.60 N 12 17 NE A ARG 562 ? ? CZ A ARG 562 ? ? NH2 A ARG 562 ? ? 117.00 120.30 -3.30 0.50 N 13 17 CB B PHE 524 ? ? CG B PHE 524 ? ? CD1 B PHE 524 ? ? 126.49 120.80 5.69 0.70 N 14 17 N B SER 528 ? ? CA B SER 528 ? ? CB B SER 528 ? ? 101.27 110.50 -9.23 1.50 N 15 17 NE B ARG 560 ? ? CZ B ARG 560 ? ? NH1 B ARG 560 ? ? 128.21 120.30 7.91 0.50 N 16 17 NE B ARG 560 ? ? CZ B ARG 560 ? ? NH2 B ARG 560 ? ? 113.61 120.30 -6.69 0.50 N 17 17 NE B ARG 561 ? ? CZ B ARG 561 ? ? NH1 B ARG 561 ? ? 125.57 120.30 5.27 0.50 N 18 17 NE B ARG 562 ? ? CZ B ARG 562 ? ? NH1 B ARG 562 ? ? 116.30 120.30 -4.00 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 552 ? ? -62.49 -73.55 2 1 ARG A 562 ? ? 55.99 -178.59 3 1 THR B 526 ? ? 46.19 81.85 4 1 SER B 532 ? ? -96.45 49.98 5 1 ALA B 552 ? ? -62.68 -73.36 6 1 HIS B 559 ? ? -143.14 29.94 7 1 ARG B 562 ? ? 63.25 -82.76 8 2 THR A 526 ? ? -155.41 -42.61 9 2 SER A 532 ? ? -152.36 -46.13 10 2 ALA A 552 ? ? -60.05 -75.79 11 2 THR B 526 ? ? -133.69 -42.14 12 2 LEU B 527 ? ? 56.87 -175.11 13 2 ALA B 552 ? ? -62.86 -72.72 14 2 ARG B 562 ? ? 55.29 -175.34 15 3 THR A 526 ? ? -155.91 25.06 16 3 SER A 532 ? ? -159.22 -70.32 17 3 ALA A 552 ? ? -62.24 -74.11 18 3 ARG A 562 ? ? 62.00 165.96 19 3 THR B 526 ? ? 46.61 84.73 20 3 ALA B 552 ? ? -62.61 -74.52 21 3 ARG B 562 ? ? 54.10 77.87 22 4 SER A 532 ? ? -138.35 -47.57 23 4 ALA A 552 ? ? -62.78 -72.12 24 4 ARG A 562 ? ? 63.18 102.36 25 4 SER B 532 ? ? -102.91 61.44 26 4 ALA B 552 ? ? -68.22 -76.01 27 4 ARG B 562 ? ? 57.22 -174.03 28 5 THR A 526 ? ? -151.87 80.79 29 5 ALA A 552 ? ? -67.92 -75.51 30 5 ARG A 562 ? ? 52.90 -171.40 31 5 LEU B 527 ? ? 56.72 -179.75 32 5 ALA B 552 ? ? -60.11 -71.96 33 5 ARG B 561 ? ? -137.18 -50.91 34 6 THR B 526 ? ? -150.07 72.50 35 6 ALA B 552 ? ? -60.34 -73.83 36 6 ARG B 561 ? ? -134.71 -51.48 37 7 THR A 526 ? ? -130.63 -73.91 38 7 LEU A 527 ? ? 54.22 82.34 39 7 SER A 532 ? ? -163.13 -40.19 40 7 THR B 526 ? ? -153.07 25.96 41 7 GLU B 530 ? ? -162.74 117.74 42 7 ALA B 552 ? ? -62.21 -72.38 43 7 ARG B 562 ? ? 63.36 77.05 44 8 GLU A 530 ? ? -165.57 113.97 45 8 ALA A 552 ? ? -64.29 -71.71 46 8 SER B 532 ? ? -148.52 28.48 47 8 ALA B 552 ? ? -63.11 -72.99 48 8 ARG B 560 ? ? -49.78 100.89 49 8 ARG B 561 ? ? 72.96 -62.29 50 8 ARG B 562 ? ? 175.36 173.45 51 9 LEU A 527 ? ? -157.05 23.46 52 9 ALA A 552 ? ? -62.93 -72.62 53 9 ARG A 561 ? ? -146.18 50.36 54 9 PRO B 529 ? ? -69.79 80.70 55 9 ALA B 552 ? ? -68.11 -72.91 56 9 PHE B 557 ? ? -75.68 46.62 57 9 HIS B 559 ? ? -153.77 40.89 58 9 ARG B 561 ? ? -141.55 55.41 59 10 SER A 532 ? ? -93.45 -62.47 60 10 ALA A 552 ? ? -68.25 -75.28 61 10 LEU B 527 ? ? -156.58 25.34 62 10 PRO B 529 ? ? -69.80 91.31 63 10 ALA B 552 ? ? -62.89 -77.02 64 11 ALA A 552 ? ? -70.88 -75.77 65 11 THR B 526 ? ? 51.35 -170.79 66 11 SER B 532 ? ? -142.95 -45.26 67 11 ALA B 552 ? ? -58.30 -72.17 68 11 HIS B 559 ? ? -105.94 -154.45 69 11 ARG B 560 ? ? 68.37 -72.53 70 11 ARG B 561 ? ? -99.27 38.68 71 12 SER A 532 ? ? 51.94 78.22 72 12 ALA A 552 ? ? -66.30 -75.61 73 12 ARG A 562 ? ? 42.03 -161.11 74 12 LEU B 527 ? ? 59.14 -176.82 75 12 ALA B 552 ? ? -60.82 -75.36 76 12 ARG B 562 ? ? 45.94 -165.03 77 13 PRO A 529 ? ? -69.69 91.75 78 13 SER A 532 ? ? -173.40 -43.42 79 13 ALA A 552 ? ? -62.66 -72.76 80 13 HIS A 559 ? ? -107.73 46.38 81 13 ARG A 562 ? ? 39.54 39.81 82 13 THR B 526 ? ? -152.58 62.61 83 13 ALA B 552 ? ? -61.59 -75.60 84 13 ARG B 560 ? ? -51.26 103.55 85 13 ARG B 561 ? ? 73.13 -61.93 86 13 ARG B 562 ? ? 176.13 155.77 87 14 ALA A 552 ? ? -67.29 -74.75 88 14 ARG A 561 ? ? -149.90 46.22 89 14 PRO B 529 ? ? -69.77 -179.80 90 14 SER B 532 ? ? -157.31 46.10 91 14 ALA B 552 ? ? -63.00 -72.50 92 14 ARG B 562 ? ? 42.09 -161.04 93 15 THR A 526 ? ? -146.09 41.83 94 15 LEU A 527 ? ? 58.32 -175.56 95 15 SER A 532 ? ? -134.61 -51.68 96 15 ALA A 552 ? ? -62.74 -72.78 97 15 HIS A 559 ? ? -141.86 45.41 98 15 ARG A 561 ? ? -150.84 49.27 99 15 SER B 532 ? ? -131.07 -58.62 100 15 ALA B 552 ? ? -61.05 -74.44 101 15 ARG B 562 ? ? 45.85 -164.89 102 16 VAL A 550 ? ? -64.31 -86.56 103 16 HIS A 559 ? ? -116.76 59.82 104 16 THR B 526 ? ? -141.30 -3.73 105 16 PRO B 529 ? ? -69.39 -174.46 106 16 VAL B 541 ? ? -59.44 -73.00 107 16 ARG B 561 ? ? 95.39 -47.98 108 17 PHE A 557 ? ? -75.66 35.02 109 17 PHE B 524 ? ? -151.49 5.66 110 17 LEU B 527 ? ? -116.09 52.97 111 17 SER B 532 ? ? -148.72 -1.81 112 17 ARG B 560 ? ? -70.77 24.97 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 17 ASN A 534 ? ? -10.51 2 17 GLU B 530 ? ? -10.83 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 16 ARG A 560 ? ? 0.090 'SIDE CHAIN' 2 17 PHE A 557 ? ? 0.078 'SIDE CHAIN' 3 17 ARG B 561 ? ? 0.095 'SIDE CHAIN' # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #