HEADER SIGNALING PROTEIN 18-NOV-08 2KB0 TITLE CDC42(T35A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION CONTROL PROTEIN 42 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: G25K GTP-BINDING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDC42; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-15B KEYWDS GLOBULAR, FOLDED, SWITCH 1, MUTATION, RAS, ALTERNATIVE SPLICING, CELL KEYWDS 2 MEMBRANE, GTP-BINDING, LIPOPROTEIN, MEMBRANE, METHYLATION, KEYWDS 3 NUCLEOTIDE-BINDING, PRENYLATION, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 12 AUTHOR P.D.ADAMS,R.E.OSWALD,R.MCFEETERS REVDAT 2 20-OCT-21 2KB0 1 REMARK SEQADV REVDAT 1 01-DEC-09 2KB0 0 JRNL AUTH P.ADAMS,R.OSWALD,R.MCFEETERS JRNL TITL CDC42(T35A) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NIH-XPLOR USED TO CALCULATE STRUCTURES REMARK 4 REMARK 4 2KB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000100897. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-100% 13C; U-100% 15N] REMARK 210 CDC42(T35A), 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H TOCSY; REMARK 210 3D HNCO; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D HNCACB; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 18 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 12 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 61 HH21 ARG A 66 1.38 REMARK 500 O ILE A 46 H GLU A 49 1.44 REMARK 500 O ILE A 117 H LEU A 119 1.48 REMARK 500 OD2 ASP A 118 HG SER A 158 1.54 REMARK 500 O GLN A 61 H ASP A 63 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 13 102.78 53.47 REMARK 500 1 THR A 25 -1.27 -166.44 REMARK 500 1 ASN A 26 118.90 92.21 REMARK 500 1 LYS A 27 58.34 -179.60 REMARK 500 1 SER A 30 37.55 35.65 REMARK 500 1 GLU A 31 -37.21 -38.22 REMARK 500 1 ALA A 35 -104.79 -64.50 REMARK 500 1 GLN A 61 -104.66 44.29 REMARK 500 1 GLU A 62 -67.10 61.49 REMARK 500 1 LEU A 67 75.34 56.79 REMARK 500 1 SER A 71 4.99 52.11 REMARK 500 1 TYR A 72 82.18 -176.71 REMARK 500 1 CYS A 105 84.90 59.11 REMARK 500 1 PRO A 106 89.67 -48.56 REMARK 500 1 GLN A 116 19.10 83.71 REMARK 500 1 ILE A 117 -165.02 -61.30 REMARK 500 1 ASP A 118 -60.48 60.65 REMARK 500 1 ARG A 120 45.99 31.65 REMARK 500 1 ASP A 121 75.56 70.26 REMARK 500 1 ASP A 122 160.49 -42.83 REMARK 500 1 LYS A 135 139.45 65.46 REMARK 500 1 LEU A 149 -87.92 -112.43 REMARK 500 1 LYS A 150 52.67 -152.59 REMARK 500 1 GLN A 162 13.14 -69.85 REMARK 500 2 ALA A 13 -67.08 -177.32 REMARK 500 2 VAL A 14 -119.56 54.43 REMARK 500 2 GLU A 31 -31.46 64.65 REMARK 500 2 TYR A 32 -82.29 -58.36 REMARK 500 2 VAL A 33 60.05 73.74 REMARK 500 2 ALA A 35 56.08 -91.34 REMARK 500 2 PHE A 37 -102.63 -160.56 REMARK 500 2 ASN A 39 73.27 89.86 REMARK 500 2 ALA A 59 -21.54 -166.99 REMARK 500 2 GLU A 62 -161.88 -76.18 REMARK 500 2 ASP A 63 11.99 -62.98 REMARK 500 2 ASP A 65 -14.97 -43.86 REMARK 500 2 SER A 71 75.56 35.55 REMARK 500 2 GLN A 116 15.42 85.66 REMARK 500 2 ILE A 117 -158.96 -63.15 REMARK 500 2 ASP A 118 -57.03 56.97 REMARK 500 2 LYS A 133 -50.68 -171.23 REMARK 500 2 GLN A 134 -119.79 -143.86 REMARK 500 2 PRO A 136 174.26 -58.33 REMARK 500 3 THR A 25 -109.61 -112.26 REMARK 500 3 ASN A 26 39.15 164.64 REMARK 500 3 GLU A 31 17.70 40.38 REMARK 500 3 GLU A 49 131.23 155.43 REMARK 500 3 ASP A 63 24.51 -63.31 REMARK 500 3 ARG A 68 165.73 55.84 REMARK 500 3 PRO A 69 -1.96 -48.28 REMARK 500 REMARK 500 THIS ENTRY HAS 219 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15424 RELATED DB: BMRB DBREF 2KB0 A 1 178 UNP P60953 CDC42_HUMAN 1 178 SEQADV 2KB0 ALA A 35 UNP P60953 THR 35 ENGINEERED MUTATION SEQADV 2KB0 LYS A 163 UNP P60953 ARG 163 VARIANT SEQRES 1 A 178 MET GLN THR ILE LYS CYS VAL VAL VAL GLY ASP GLY ALA SEQRES 2 A 178 VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR ASN SEQRES 3 A 178 LYS PHE PRO SER GLU TYR VAL PRO ALA VAL PHE ASP ASN SEQRES 4 A 178 TYR ALA VAL THR VAL MET ILE GLY GLY GLU PRO TYR THR SEQRES 5 A 178 LEU GLY LEU PHE ASP THR ALA GLY GLN GLU ASP TYR ASP SEQRES 6 A 178 ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL PHE SEQRES 7 A 178 LEU VAL CYS PHE SER VAL VAL SER PRO SER SER PHE GLU SEQRES 8 A 178 ASN VAL LYS GLU LYS TRP VAL PRO GLU ILE THR HIS HIS SEQRES 9 A 178 CYS PRO LYS THR PRO PHE LEU LEU VAL GLY THR GLN ILE SEQRES 10 A 178 ASP LEU ARG ASP ASP PRO SER THR ILE GLU LYS LEU ALA SEQRES 11 A 178 LYS ASN LYS GLN LYS PRO ILE THR PRO GLU THR ALA GLU SEQRES 12 A 178 LYS LEU ALA ARG ASP LEU LYS ALA VAL LYS TYR VAL GLU SEQRES 13 A 178 CYS SER ALA LEU THR GLN LYS GLY LEU LYS ASN VAL PHE SEQRES 14 A 178 ASP GLU ALA ILE LEU ALA ALA LEU GLU HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 PRO A 87 LYS A 96 1 10 HELIX 3 3 LYS A 96 CYS A 105 1 10 HELIX 4 4 ASP A 122 LYS A 133 1 12 HELIX 5 5 THR A 138 ARG A 147 1 10 HELIX 6 6 GLY A 164 GLU A 178 1 15 SHEET 1 A 6 ALA A 41 VAL A 44 0 SHEET 2 A 6 TYR A 51 PHE A 56 -1 O LEU A 53 N VAL A 42 SHEET 3 A 6 ILE A 4 GLY A 10 1 N VAL A 8 O PHE A 56 SHEET 4 A 6 VAL A 77 SER A 83 1 O VAL A 77 N VAL A 7 SHEET 5 A 6 PHE A 110 THR A 115 1 O THR A 115 N PHE A 82 SHEET 6 A 6 LYS A 153 GLU A 156 1 O VAL A 155 N GLY A 114 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1